#ifndef GLF_H_ #define GLF_H_ typedef struct { unsigned char ref_base:4, dummy:4; /** "XACMGRSVTWYHKDBN"[ref_base] gives the reference base */ unsigned char max_mapQ; /** maximum mapping quality */ unsigned char lk[10]; /** log likelihood ratio, capped at 255 */ unsigned min_lk:8, depth:24; /** minimum lk capped at 255, and the number of mapped reads */ } glf1_t; #endif