id mutant_strain dna start length reference_base sample_base consensus_score loci_multiplicity mapping_quality neighbor_quality number_wildtype_reads number_variant_reads sequencing_depth sample_reads variant_type indel_size classes descriptions parent_features 13 CB6880_redo I 200948 1 A T 223 1.00 63 62 0 15 15 @tttTttttttttttt point 0 SNP none {haw293} 14 CB6880_redo I 200949 1 C T 223 1.00 63 62 0 15 15 @tttTttttttttttt point 0 SNP none {haw294} 15 CB6880_redo I 229295 1 G A 44 1.00 63 62 34 52 86 @,..a..AAaaAAa.A,aa,a.AA,A.a..aa.A,.,a.aaA.aaaaa,aAaa,.aAaaa,A.a,,A.aaAAaaA,A,.AA.A.,,a point 0 missense CCC->CTC[Pro->Leu] {Y48G1BM.6} 16 CB6880_redo I 229960 1 T A 24 1.00 63 62 45 59 104 @A,,a,.aA,a...,Aaa,,A,..,A,AaaAa.,aAa,.aaAAAaaaaa.a,AAaa.a.a.A.Aa.aAaAaA.aa..,.a,..aA.a.a,...AA.aa.a point 0 silent GCA->GCT[Ala->Ala] {Y48G1BM.6} 17 CB6880_redo I 232358 1 C T 32 1.00 63 62 9 13 22 @T,.TTt,T,TT..TTT,.,Ttt point 0 nongenic,nongenic -10783 upstream,3269 into {Y48G1BL.6},{Y48G1BM.6} 18 CB6880_redo I 254404 1 T G 3 3.00 0 18 3 4 7 @GGGG,.. point 0 nongenic,nongenic 274 downstream,304 downstream {Y48G1BM.1},{Y48G1BM.9} 19 CB6880_redo I 256184 1 G A 10 1.00 63 62 8 8 16 @,,,a,a,aaaA,,,aa point 0 nongenic 423 into {Y48G1BM.9} 6946 CB6880_redo I 256855 0 X X -1000 -999.99 -1000 -1000 4 -1 3 @....ggg indel 0 nongenic,nongenic -248 upstream,559 downstream {Y48G1BM.9},{Y48G1BR.1} 24 CB6880_redo I 278120 1 A G 3 1.00 63 16 1 9 10 @GGG,GGGGGG point 0 nongenic,nongenic -18962 upstream,-1999 upstream {Y48G1BR.1},{C53D5.3} 25 CB6880_redo I 278124 1 T G 16 1.00 63 0 0 8 8 @GGGGGGGG point 0 nongenic,nongenic -18966 upstream,-1995 upstream {Y48G1BR.1},{C53D5.3} 39 CB6880_redo I 349276 1 G T 13 1.00 63 0 0 5 5 @TTTTT point 0 nongenic,nongenic,nongenic -908 upstream,739 into,915 downstream {Y48G1A.6a},{Y48G1A.1},{Y48G1A.2} 41 CB6880_redo I 361325 1 C A 255 1.00 63 62 0 35 35 @AaAaAAAaAAAaAAaaAaAaaAAAaAaAAAAAAaA point 0 missense AAG->AAT[Lys->Asn] {R119.1} 42 CB6880_redo I 369897 1 T C 113 1.81 63 62 1 6 7 @cccccc, point 0 nongenic 1525 into {R119.2} 47 CB6880_redo I 593404 1 G T 255 1.00 63 62 0 39 39 @TtTTttTTttttTTtttttTTTTttttTttTTtttTttt point 0 missense,SNP AAC->AAA[Asn->Lys],none {F56A6.2},{haw859,pas12356} 48 CB6880_redo I 598296 1 T A 215 1.00 63 62 0 11 11 @AAaaaaaaaAa point 0 nongenic,nongenic -14674 upstream,9279 into {F56A6.5},{F56A6.2} 49 CB6880_redo I 602385 1 T C 255 1.00 63 62 0 24 24 @ccCCCCCCCCCCCcCCCCCCCCcc point 0 nongenic,nongenic -18763 upstream,5190 into {F56A6.5},{F56A6.2} 163693 CB6880_redo I 670383 113 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered non-exonic, 3921 to 4034 bp into {Y18H1A.14} 163694 CB6880_redo I 693317 50 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered,uncovered non-exonic, 1287 to 1337 bp into,non-exonic, 1585 to 1635 bp into {Y18H1A.4.2},{Y18H1A.4.1} 6950 CB6880_redo I 774905 0 X X -1000 -999.99 -1000 -1000 5 -3 2 @,,,,.tt indel 0 nongenic,nongenic,nongenic -1442 downstream,-1452 downstream,-28465 upstream {T06A4.1b},{T06A4.1a},{ZC123.3} 83 CB6880_redo I 851734 1 G A 12 1.00 63 10 0 4 4 @aaaa point 0 nongenic,nongenic -1726 upstream,-4968 upstream {Y95B8A.8},{ZC123.4a,ZC123.4b,ZC123.4c} 84 CB6880_redo I 851737 1 G A 15 1.00 63 12 0 6 6 @aaaaaa point 0 nongenic,nongenic -1723 upstream,-4971 upstream {Y95B8A.8},{ZC123.4a,ZC123.4b,ZC123.4c} 89 CB6880_redo I 918077 1 A G 32 1.69 63 62 4 5 9 @GGGgG.... point 0 nongenic,nongenic,nongenic,nongenic,nongenic -20407 upstream,1063 into,1073 into,5635 into,5661 into {Y95B8A.2},{Y95B8A.12b},{Y95B8A.12a},{Y95B8A.12c,Y95B8A.12e,Y95B8A.12f},{Y95B8A.12d} 93 CB6880_redo I 968802 1 G C 255 1.00 63 62 0 33 33 @CCcccCcCcccccCCCCccCcCCcccccCcCcC point 0 nongenic,nongenic,nongenic,nongenic -11426 upstream,627 into,879 downstream,906 downstream {Y34D9B.1a},{F54A5.2},{F54A5.3a},{F54A5.3d} 163695 CB6880_redo I 1009179 51 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered non-exonic, 5288 to 5339 bp into {C54G6.2} 110 CB6880_redo I 1142103 1 C A 255 1.00 63 62 0 33 33 @AaaaAAAAaAAaAAAAaAAaAAaAAAAAaaAAA point 0 missense,SNP GGT->TGT[Gly->Cys],none {Y48G8AL.10},{haw1570} 113 CB6880_redo I 1146582 1 A G 3 1.00 63 0 0 5 5 @GGGGc point 0 nongenic,nongenic -5558 upstream,4551 into {Y48G8AL.9},{Y48G8AL.10} 117 CB6880_redo I 1302563 1 G T 247 1.50 63 62 0 18 18 @tTtTttttttttttTttT point 0 nongenic -3012 upstream {K12C11.4} 163696 CB6880_redo I 1318188 96 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered non-exonic, 12612 to 12708 bp into {K12C11.4} 163697 CB6880_redo I 1437166 134 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered non-exonic, 886 to 1020 bp into {Y92H12BR.8} 163698 CB6880_redo I 1440203 61 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered non-exonic, 3923 to 3984 bp into {Y92H12BR.8} 168 CB6880_redo I 1632604 1 A C 3 4.31 63 0 1 5 6 @CGCCC, point 0 nongenic,nongenic,nongenic,nongenic -2136 upstream,-5997 upstream,762 into,891 into {Y73E7A.8},{Y73E7A.7},{Y73E7A.1a.2,Y73E7A.1b},{Y73E7A.1a.1} 169 CB6880_redo I 1632607 1 T G 13 4.19 63 0 0 5 5 @GGGGG point 0 nongenic,nongenic,nongenic,nongenic -2133 upstream,-6000 upstream,759 into,888 into {Y73E7A.8},{Y73E7A.7},{Y73E7A.1a.2,Y73E7A.1b},{Y73E7A.1a.1} 163699 CB6880_redo I 1658924 81 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered non-exonic, 2005 to 2086 bp into {Y71G12B.33} 163700 CB6880_redo I 1659551 57 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered non-exonic, 1402 to 1459 bp into {Y71G12B.33} 218 CB6880_redo I 1763011 1 A T 255 1.00 63 62 0 24 24 @ttTtTtTttTTtTtTTTTTtTttt point 0 nongenic,nongenic,nongenic -4876 upstream,304 into,3391 into {Y71G12B.8},{Y71G12B.9b},{Y71G12B.9a} 220 CB6880_redo I 1864004 1 T C 143 1.12 63 62 0 8 8 @CcccCccc point 0 SNP none {haw2851} 224 CB6880_redo I 2033983 1 A G 83 1.00 63 62 5 11 16 @.,,,,GGgGGGgGggG point 0 nongenic,nongenic 32 downstream,401 downstream {Y20F4.2},{Y20F4.4} 225 CB6880_redo I 2033985 1 G A 168 1.00 63 62 5 13 18 @.,,,,AAaAAAaAaaAaA point 0 nongenic,nongenic 34 downstream,399 downstream {Y20F4.2},{Y20F4.4} 227 CB6880_redo I 2141889 1 C T 191 1.00 63 62 0 16 16 @tttttttttttttttt point 0 nongenic,nongenic -18154 upstream,4085 into {W03F11.6a,W03F11.6c,W03F11.6d},{Y37E3.17a,Y37E3.17b} 163701 CB6880_redo I 2183784 57 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered non-exonic, 23740 to 23797 bp into {W03F11.6a,W03F11.6c,W03F11.6d} 233 CB6880_redo I 2379643 1 C T 243 1.00 63 62 0 11 11 @TTTTTttttTT point 0 missense,SNP ATG->ATA[Met->Ile],none {Y39G10AR.17},{snp_Y39G10AR[4]} 237 CB6880_redo I 2393279 1 C G 25 1.00 63 0 2 5 7 @.ggg.gg point 0 silent CCG->CCC[Pro->Pro] {Y39G10AR.18b} 238 CB6880_redo I 2419826 1 C T 255 1.00 63 62 0 30 30 @ttTtttTtTTTttttttTttttTTTttTtt point 0 missense GTG->ATG[Val->Met] {F23C8.5.1,F23C8.5.2} 248 CB6880_redo I 2494707 1 A T 22 1.00 63 62 2 5 7 @TT.TT.T point 0 nongenic,nongenic -3427 upstream,2666 into {Y23H5B.5},{Y23H5B.6} 250 CB6880_redo I 2514468 1 C T 255 1.00 63 62 0 33 33 @tttttttTtTTTttTTttttTTTTTTtTtttTT point 0 nongenic,nongenic,nongenic -18800 upstream,-683 upstream,-756 upstream {Y23H5B.4},{Y23H5B.7c},{Y23H5B.7a,Y23H5B.7b} 259 CB6880_redo I 2568367 1 C T 255 1.00 63 62 0 32 32 @tttttTttTtttTtTtTTttTTTTTTttttTt point 0 nongenic -393 upstream {C55C2.1} 260 CB6880_redo I 2568368 1 G A 255 1.00 63 62 0 33 33 @aaaaaAaaAaaaAaAaAAaaAAAAAAaaaaAaa point 0 nongenic -392 upstream {C55C2.1} 261 CB6880_redo I 2579329 1 A T 255 1.00 63 62 0 31 31 @tTtTTTTtTTtTtTtTtTtTtTTttTttTtT point 0 nongenic -3307 upstream {C55C2.5a,C55C2.5b,C55C2.5c} 262 CB6880_redo I 2632093 1 C T 255 1.00 63 62 0 33 33 @ttTTttTTTttTtttTTtttTttttTtttTtTt point 0 nongenic,nongenic -3514 upstream,-914 upstream {Y23H5A.7a,Y23H5A.7b},{Y23H5A.8} 263 CB6880_redo I 2710697 1 T C 255 1.00 63 62 0 35 35 @cCcCCCcCCCCccccCcCcCCCCcCCCcCCcCCCc point 0 SNP none {haw4255} 265 CB6880_redo I 2777373 1 C G 255 1.00 63 62 0 18 18 @gGggGGgggGGGGGgggg point 0 five_prime_UTR,silent none,GCG->GCC[Ala->Ala] {Y71F9B.13c},{Y71F9B.13a,Y71F9B.13b} 281 CB6880_redo I 3146645 1 C T 255 8.00 63 62 0 29 29 @TTTTTTtTTTtTTTTTtTTtttTTTTtTt point 0 nongenic,nongenic,nongenic -1351 upstream,-3468 upstream,1150 into {K09H9.2.1},{K09H9.5},{K09H9.6} 285 CB6880_redo I 3213915 1 C T 255 1.00 63 62 0 27 27 @TTttttttTtTttTtttTttTttTttt point 0 silent TTC->TTT[Phe->Phe] {Y54E10A.4a.1,Y54E10A.4a.2,Y54E10A.4b} 292 CB6880_redo I 3430242 1 A C 3 1.00 63 0 4 9 13 @,,,.ccccccccc point 0 nongenic 638 into {K03E5.1} 6958 CB6880_redo I 3444845 0 X X -1000 -999.99 -1000 -1000 4 -3 1 @,.,,cc indel 3 nongenic,nongenic,nongenic -2655 upstream,-2861 downstream,-4483 upstream {Y47G6A.13},{Y47G6A.28},{Y47G6A.11} 295 CB6880_redo I 3483821 1 C T 255 1.00 63 62 0 21 21 @tttTtTTTtTtTtttTTTttt point 0 nongenic 680 into {Y47G6A.8} 296 CB6880_redo I 3485158 1 C A 15 4.69 63 62 2 3 5 @Aaa,. point 0 nongenic 657 downstream {Y47G6A.8} 304 CB6880_redo I 3885008 1 A G 255 1.00 63 62 0 18 18 @GGGGGGgGggGGgGGGgG point 0 SNP none {haw5911} 305 CB6880_redo I 3885020 1 A G 255 1.00 63 62 0 22 22 @GGGGGgGggGGgGGGgGGGgGG point 0 SNP none {haw5912} 309 CB6880_redo I 3935098 1 T C 254 1.19 63 62 0 14 14 @CcCCCCCCcCcCCC point 0 nongenic,nongenic 184 downstream,305 downstream {T21E3.3},{T21E3.1} 310 CB6880_redo I 3935121 1 A C 247 1.94 63 62 0 17 17 @CcCcCCCCCcCCCCCCC point 0 nongenic,nongenic 161 downstream,328 downstream {T21E3.3},{T21E3.1} 311 CB6880_redo I 3935148 1 G C 180 2.00 63 62 0 13 13 @CCcCCCCCCCCCC point 0 nongenic,nongenic 134 downstream,355 downstream {T21E3.3},{T21E3.1} 312 CB6880_redo I 3990146 1 T C 102 3.56 63 62 78 87 165 @,,CCC,CcC,C,,c,CC,CCCcC,CCCC,CCCCCC,,,,,cC,C,c,C,CCCC,C,CCCCCCCc,C,,c,,C,,,CcC,C,CCC,CC,C,,,C,C,CCC point 0 nongenic -5564 upstream {F28H1.1} 313 CB6880_redo I 3990323 1 T C 198 2.88 63 62 69 186 255 @,C.Cc,,C,CC....c.CC,CCCC..C,CccC,CCCCCCCCccCCCC,,CCCC.cCCcCCCCCCCCCCCcCCCCCCCcCCCCCCC,Cc,CCccccccCC point 0 nongenic -5387 upstream {F28H1.1} 315 CB6880_redo I 4102621 1 T A 233 1.00 63 62 0 13 13 @aaaAaAaaaAaaa point 0 SNP none {haw6011} 316 CB6880_redo I 4119099 1 C A 255 1.00 63 62 0 27 27 @AAaAAaaAaaAAAAaAAaaaaAAaaAa point 0 nongenic,nongenic -4382 upstream,935 downstream {H31G24.1},{H31G24.3} 319 CB6880_redo I 4127917 1 G A 255 1.00 63 62 0 29 29 @AAaaaAaAAaaAAAAaaaaaAaAaAAaaa point 0 SNP none {haw6028} 322 CB6880_redo I 4185826 1 A C 69 6.69 63 14 3 3 6 @,.,CCC point 0 nongenic,nongenic,nongenic,nongenic -722 upstream,-724 upstream,765 into,831 downstream {C18E3.7c.1},{C18E3.7b,C18E3.7c.2,C18E3.7d.2,C18E3.7d.3},{C18E3.7a},{R12E2.1} 342 CB6880_redo I 4476753 1 C A 197 1.00 63 62 0 19 19 @aaaaaaaaaaaaaaaaaaa point 0 SNP none {haw6315} 402 CB6880_redo I 4734614 1 C A 255 1.00 63 62 0 32 32 @aAaaAAaAAaaaAAAAAAaaAAaaaAaAaAAa point 0 missense TCC->TAC[Ser->Tyr] {C10H11.3} 406 CB6880_redo I 4799019 1 C A 255 1.00 63 62 0 22 22 @AaaaaAaAaAaAAAaaAAaaAa point 0 nongenic,nongenic -1079 upstream,-6516 upstream {F54D7.3},{F54D7.4} 163704 CB6880_redo I 5032350 75 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered,uncovered,uncovered,uncovered non-exonic, 3678 to 3753 bp into,non-exonic, 4643 to 4718 bp into,non-exonic, 5195 to 5270 bp into,non-exonic, 8461 to 8536 bp into {C46H11.4f},{C46H11.4e},{C46H11.4c},{C46H11.4d} 411 CB6880_redo I 5221052 1 C A 255 1.00 63 62 0 30 30 @AAaAAAAaAaaaaaaAaAAaAAaAAaaaaA point 0 nongenic -5830 upstream {C32E12.5.1} 417 CB6880_redo I 5301101 1 C A 255 1.00 63 62 0 32 32 @AAAaaaaaAaAaAAaaAaaaaaAaAAaaAAAA point 0 SNP,three_prime_UTR none,none {haw6781,uCE1-872},{C01G8.9a} 418 CB6880_redo I 5448372 1 A T 255 1.00 63 62 0 45 45 @ttTttttttTTTttttttttTTtTTtttTTTTtttTttTTTTttt point 0 SNP none {haw6835} 419 CB6880_redo I 5451259 1 G A 255 1.81 63 62 0 33 33 @AaAaaaaAAaaAAAAAaAaAaAaAAAaAAAaAa point 0 nongenic -4400 upstream {F27C1.13} 420 CB6880_redo I 5590737 1 A C 197 1.00 63 62 1 9 10 @,cCccCCCcC point 0 nongenic,nongenic,nongenic -1153 upstream,126 into,6517 into {M01E11.7b.1},{M01E11.7d},{M01E11.7a,M01E11.7c} 421 CB6880_redo I 5622949 1 C T 255 1.00 63 62 0 17 17 @TttTtttttttttTtTt point 0 nongenic,nongenic 197 downstream,24 downstream {F46F11.10},{F46F11.7} 423 CB6880_redo I 5992385 1 C T 255 1.00 63 62 0 30 30 @tTtTTTtTtttTttttTTtTttTTtttTtT point 0 nongenic,nongenic,nongenic 246 into,286 downstream,917 downstream {C06A5.11},{C06A5.7a},{C06A5.7b} 424 CB6880_redo I 6139031 1 A T 255 5.88 63 62 0 15 15 @ttttttttTTTtTTT point 0 nongenic,nongenic 186 downstream,73 downstream {F56F4.6},{F56F4.4} 425 CB6880_redo I 6151527 1 G C 26 1.00 63 62 5 5 10 @C.,,,,cccc point 0 nongenic -2549 upstream {T09B4.5a} 426 CB6880_redo I 6163210 1 T A 255 1.00 63 62 0 19 19 @AAaAAaAAAaAaaAaaaAa point 0 SNP none {haw7231} 427 CB6880_redo I 6163280 1 T C 169 1.00 63 62 0 6 6 @CCccCc point 0 nongenic -1612 upstream {T09B4.7} 428 CB6880_redo I 6163283 1 T C 101 1.00 63 0 0 4 4 @ccCc point 0 nongenic -1615 upstream {T09B4.7} 432 CB6880_redo I 6473444 1 T G 48 6.88 63 62 28 30 58 @G..,,g.,ggG,.,GG,G,g,.GGGG,gGGG,,,,G,GggGgg.g,.Ggg,..,GG.. point 0 nongenic,nongenic,nongenic -1490 upstream,-616 upstream,740 downstream {K06A5.7.1},{K06A5.1},{K06A5.8d} 438 CB6880_redo I 6801831 1 T C 81 1.00 63 44 1 3 4 @CcC, point 0 three_prime_UTR none {E02D9.1b.1,E02D9.1b.2} 439 CB6880_redo I 6820252 1 T C 255 1.00 63 62 0 23 23 @CCCccCCcCccccCcCCcccccC point 0 SNP none {haw7362} 440 CB6880_redo I 6925456 1 C T 255 1.00 63 62 0 29 29 @TTttTtttTTtTttTtTTtTTTTTTTTtt point 0 non_start ATG->ATA[Met->Ile] {C48B6.9} 441 CB6880_redo I 6949307 1 A G 255 1.56 63 62 0 22 22 @GGgGgggGGGggGgGggggggG point 0 nongenic,nongenic,nongenic,nongenic -1826 upstream,-3949 upstream,1151 into,814 into {T10B11.1},{T10B11.6},{T10B11.7a},{T10B11.7b} 442 CB6880_redo I 6949331 1 T A 255 2.81 63 62 0 18 18 @aAaAaaaaaaAAaaaaAa point 0 nongenic,nongenic,nongenic,nongenic -1802 upstream,-3973 upstream,1127 into,790 into {T10B11.1},{T10B11.6},{T10B11.7a},{T10B11.7b} 443 CB6880_redo I 7132123 1 C T 255 1.00 63 62 0 31 31 @TTTTTtTTttTtTTtTtttttTTtTTttTtt point 0 nongenic,nongenic -3700 upstream,-373 upstream {K10D3.2},{K10D3.3} 444 CB6880_redo I 7140681 1 G T 254 1.00 63 62 0 25 25 @TtCTTtttttttTttttttttTttt point 0 nongenic,nongenic -708 upstream,405 into {K10D3.4},{H37N21.1} 445 CB6880_redo I 7140819 1 T C 255 1.00 63 62 0 30 30 @CCCccCCcCcCCCCCCCCCCcCCCCCCCCc point 0 SNP none {haw7427} 446 CB6880_redo I 7140831 1 A T 255 1.00 63 62 0 27 27 @TTtTtTTTTTTTTTTtTTTTTTTTtTT point 0 SNP none {haw7428} 447 CB6880_redo I 7301404 1 C G 255 1.00 63 62 0 31 31 @gGggggGgGgGgggGggggggGGgggGgggG point 0 missense GGC->GCC[Gly->Ala] {F13G3.5a,F13G3.5b.1,F13G3.5b.2} 450 CB6880_redo I 7428554 1 T C 255 1.00 63 62 0 20 20 @cCCCCcCCcCCCcCCCCCCC point 0 SNP none {haw7535} 452 CB6880_redo I 7547117 1 A T 255 1.00 63 62 0 22 22 @tTTtTTTTTTtttTTttTTtTt point 0 SNP none {haw7629} 453 CB6880_redo I 7547127 1 A T 255 1.00 63 62 0 24 24 @TtTTTTTTtttTTttTTtTtTttT point 0 SNP none {haw7630} 454 CB6880_redo I 7547365 1 C A 238 1.00 63 62 0 15 15 @AaaAAaaaaaaaaAa point 0 SNP none {haw7631} 457 CB6880_redo I 7719614 1 T G 3 6.94 0 2 3 8 11 @GGGGGGGG,,. point 0 nongenic -12562 upstream {F27D4.2b.1,F27D4.2b.2} 458 CB6880_redo I 7741844 1 C A 63 9.31 63 52 0 7 7 @aaaaaaa point 0 nongenic -13932 upstream {F58H10.1} 463 CB6880_redo I 7753373 1 T G 5 1.00 63 12 3 3 6 @,,G,gg point 0 nongenic -2403 upstream {F58H10.1} 464 CB6880_redo I 7753374 1 G C 12 1.00 63 4 3 3 6 @,,,ccC point 0 nongenic -2402 upstream {F58H10.1} 473 CB6880_redo I 7869008 1 T A 84 1.00 62 62 1 6 7 @,aAAAAA point 0 nongenic,nongenic,nongenic,nongenic,nongenic,nongenic,nongenic,nongenic,nongenic -1095 upstream,-749 upstream,2533 into,2614 into,2657 into,2659 into,2668 into,2832 into,2883 into {R11A5.6},{R11A5.4c.1},{R11A5.4d.5},{R11A5.4a.1,R11A5.4a.2,R11A5.4b.2},{R11A5.4c.2},{R11A5.4c.3,R11A5.4d.1,R11A5.4d.3,R11A5.4d.4,R11A5.4d.6},{R11A5.4d.2},{R11A5.4c.4},{R11A5.4b.1} 474 CB6880_redo I 7869009 1 C T 94 1.00 62 62 0 7 7 @TtTTTTT point 0 nongenic,nongenic,nongenic,nongenic,nongenic,nongenic,nongenic,nongenic,nongenic -1096 upstream,-748 upstream,2534 into,2615 into,2658 into,2660 into,2669 into,2833 into,2884 into {R11A5.6},{R11A5.4c.1},{R11A5.4d.5},{R11A5.4a.1,R11A5.4a.2,R11A5.4b.2},{R11A5.4c.2},{R11A5.4c.3,R11A5.4d.1,R11A5.4d.3,R11A5.4d.4,R11A5.4d.6},{R11A5.4d.2},{R11A5.4c.4},{R11A5.4b.1} 6972 CB6880_redo I 7879119 0 X X -1000 -999.99 -1000 -1000 4 -3 1 @..,,ttTtt indel 0 nongenic,nongenic -3564 upstream,-5227 upstream {R11A5.7.1},{F55D12.1} 476 CB6880_redo I 7879475 1 C T 118 1.00 63 62 0 4 4 @TtTT point 0 SNP none {haw7930} 481 CB6880_redo I 7879517 1 G A 173 1.00 63 62 0 6 6 @AaAAaa point 0 nongenic,nongenic -3962 upstream,-4828 upstream {R11A5.7.1},{F55D12.1} 482 CB6880_redo I 7879522 1 A T 229 1.31 63 62 0 9 9 @TtTTtttTt point 0 nongenic,nongenic -3967 upstream,-4823 upstream {R11A5.7.1},{F55D12.1} 488 CB6880_redo I 8003089 1 G A 255 1.00 63 62 0 37 37 @AAaaaaAAaaAaaAaaaAAaAaAAAAAaAAAAAaaaa point 0 missense CAT->TAT[His->Tyr] {C54G4.4} 492 CB6880_redo I 8303619 1 T C 255 1.00 63 62 0 29 29 @CcCcccCCCCcCCCCCCCccCcCCcCcCc point 0 nongenic,nongenic,nongenic 2796 into,2878 into,3940 into {F52B5.1c},{F52B5.1b},{F52B5.1a} 498 CB6880_redo I 8439047 1 C G 28 1.00 63 2 3 7 10 @g.,gggggg, point 0 nongenic,nongenic -415 upstream,701 downstream {F10D11.2},{F10D11.3} 499 CB6880_redo I 8454796 1 G T 75 1.00 63 62 1 4 5 @tttt, point 0 nongenic,nongenic -3808 upstream,-5421 upstream {F10D11.6},{D1081.2} 514 CB6880_redo I 8781566 1 G C 68 2.00 63 0 0 6 6 @CCCCCC point 0 nongenic,nongenic,nongenic -11391 upstream,-4061 upstream,1837 into {DY3.7},{DY3.5},{DY3.6} 6977 CB6880_redo I 8781576 0 X X -1000 -999.99 -1000 -1000 4 -2 2 @,,,cg. indel 5 nongenic,nongenic,nongenic -11382 upstream,-1846 downstream,-4071 upstream {DY3.7},{DY3.6},{DY3.5} 518 CB6880_redo I 9039720 1 A G 255 1.00 63 62 0 35 35 @GGGgGGGGGGGGgGgGGGGGggGggGgGGGGGGgg point 0 SNP none {haw8746} 163707 CB6880_redo I 9205277 51 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered,uncovered,uncovered non-exonic, 397 to 448 bp into,non-exonic, 5002 to 5053 bp into,non-exonic, 5004 to 5055 bp into {F25H5.1c.2},{F25H5.1a,F25H5.1c.3,F25H5.1f},{F25H5.1c.1} 519 CB6880_redo I 9235193 1 C T 255 1.00 63 62 0 25 25 @TtttTtTtTTTTtTTtTTTTTtttT point 0 SNP none {haw8914} 520 CB6880_redo I 9235318 1 G A 255 1.00 63 62 0 27 27 @AAaAAAaaAaAaAAAAaaAaAaAaAaA point 0 SNP none {haw8915} 521 CB6880_redo I 9235427 1 G A 255 1.00 63 62 0 19 19 @aAaAAAaAAaaAaAAaaaA point 0 nongenic,nongenic,nongenic -1877 upstream,1258 into,758 into {VF36H2L.1},{F36H2.1b},{F36H2.1a,F36H2.1c} 524 CB6880_redo I 9246865 1 C G 255 1.00 63 62 0 33 33 @GgGgGGGgGGgGGGGgGGggGGgGGggGggGGG point 0 missense,SNP CGT->CCT[Arg->Pro],none {F36H2.2},{haw8926} 525 CB6880_redo I 9246866 1 G C 255 1.00 63 62 0 32 32 @cCcCCCcCCcCCCCcCCccCCcCCccCccCCC point 0 missense,SNP CGT->GGT[Arg->Gly],none {F36H2.2},{haw8927} 530 CB6880_redo I 9357394 1 A G 255 1.00 63 62 0 18 18 @ggggggggggGGgGGgGg point 0 nongenic,nongenic -1671 upstream,-323 upstream {M04C9.5a},{M04C9.4} 532 CB6880_redo I 9384409 1 C A 55 1.00 63 52 0 5 5 @GaAAA point 0 nongenic,nongenic 5217 into,5900 into {F16A11.3a,F16A11.3b,F16A11.3c},{F16A11.3d} 533 CB6880_redo I 9384410 1 C G 52 1.00 48 52 0 4 4 @aGGG point 0 nongenic,nongenic 5216 into,5899 into {F16A11.3a,F16A11.3b,F16A11.3c},{F16A11.3d} 534 CB6880_redo I 9457731 1 G A 255 1.00 63 62 0 18 18 @AAAAAAAAAaAaaaaAAa point 0 SNP none {haw9060} 535 CB6880_redo I 9573999 1 T C 255 1.00 63 62 0 33 33 @cccccCccccCccccccCcCCccccccCccccc point 0 nongenic,nongenic,nongenic,nongenic,nongenic -5777 upstream,162 into,180 into,370 into,794 downstream {C36F7.4d},{C36F7.4a.1},{C36F7.4a.2},{C36F7.4b,C36F7.4c},{C36F7.5} 538 CB6880_redo I 9699160 1 T C 255 1.00 63 62 0 30 30 @CCCCCcCCCcccCcccccccCCCccCcCCc point 0 missense,SNP AAT->AGT[Asn->Ser],none {C04F12.8},{haw9282} 539 CB6880_redo I 9737906 1 C A 255 1.00 63 62 0 20 20 @aAAAaaAAaAaAaaaAAaaA point 0 SNP none {haw9323} 543 CB6880_redo I 9903066 1 T G 22 1.00 63 54 3 5 8 @.,.ggggG point 0 nongenic 195 downstream {F52F12.4} 544 CB6880_redo I 9940580 1 A T 255 1.00 63 62 0 37 37 @ttTTTtTtttTttTtTttTtTtTTTttTtTTTTttTt point 0 SNP none {haw9585} 545 CB6880_redo I 9949834 1 T A 54 1.00 63 62 1 3 4 @.aaa point 0 nongenic,nongenic -11543 upstream,2006 into {Y106G6A.1},{T24D1.1a,T24D1.1b} 546 CB6880_redo I 10109254 1 T A 255 1.00 63 62 0 31 31 @aaAaaAaAAaAAAAaAaAaAAaAAAAAAaAa point 0 SNP none {haw9645} 6983 CB6880_redo I 10113279 0 X X -1000 -999.99 -1000 -1000 2 1 3 @..TTTt indel 0 inframe none {Y106G6D.3} 560 CB6880_redo I 10188886 1 T C 255 1.56 63 62 0 27 27 @CCccCCCccccccCccccCcccccCCc point 0 silent AAA->AAG[Lys->Lys] {C25A1.10a,C25A1.10b} 586 CB6880_redo I 10229805 1 A T 79 1.00 63 62 2 6 8 @tttttT., point 0 nongenic,nongenic,nongenic,nongenic -18472 upstream,-2806 upstream,1399 into,1401 into {ZC247.3},{Y106G6E.5.1},{Y106G6E.6.2},{Y106G6E.6.1} 6985 CB6880_redo I 10243053 0 X X -1000 -999.99 -1000 -1000 5 -3 2 @,.,,,aAA indel 0 nongenic,nongenic -11847 upstream,-5225 upstream {Y106G6E.6.1},{ZC247.3} 620 CB6880_redo I 10436459 1 T G 33 1.00 63 22 1 3 4 @,GGg point 0 nongenic,nongenic,nongenic,nongenic -592 upstream,-646 upstream,206 into,443 downstream {Y106G6H.2a.1},{Y106G6H.2a.2},{Y106G6H.3},{Y106G6H.4} 623 CB6880_redo I 10462798 1 G A 31 1.62 63 2 1 5 6 @aaa.At point 0 nongenic -7174 upstream {Y106G6H.9} 624 CB6880_redo I 10462800 1 A G 30 1.50 63 24 1 6 7 @gggcG.g point 0 nongenic -7176 upstream {Y106G6H.9} 626 CB6880_redo I 10495073 1 A G 70 1.00 63 62 2 5 7 @..GgGgg point 0 nongenic -6515 upstream {F37D6.6} 627 CB6880_redo I 10595968 1 T C 255 1.00 63 62 0 34 34 @cCCCCCcccCcCccccCCccCCCcCccCcCCCcC point 0 nongenic,nongenic -2730 upstream,1506 into {T22A3.5},{T22A3.6} 654 CB6880_redo I 10978887 1 A G 255 1.00 63 62 0 33 33 @gGgGGGGGGggGgGGggGggGgGgggggGgGGg point 0 silent,SNP TCA->TCG[Ser->Ser],none {Y52B11A.3a,Y52B11A.3b},{haw9930} 658 CB6880_redo I 10988084 1 A T 12 1.00 63 0 0 4 4 @tttt point 0 nongenic,nongenic -27394 upstream,8485 into {Y52B11A.5},{Y52B11A.4} 659 CB6880_redo I 11001775 1 C A 255 1.00 63 62 0 12 12 @AAaAAAaaAaAA point 0 nongenic,nongenic -13703 upstream,2502 into {Y52B11A.5},{Y52B11A.4} 6988 CB6880_redo I 11145687 0 X X -1000 -999.99 -1000 -1000 3 -1 2 @..,Gg indel 0 inframe none {ZK39.9} 666 CB6880_redo I 11189832 1 C T 255 1.00 63 62 0 26 26 @ttTTtttttTtTtTtTtTtTtTtTtt point 0 nongenic -17081 upstream {W06H12.1} 667 CB6880_redo I 11220200 1 C A 255 1.00 63 62 0 15 15 @aAAaaAaAaaAaaAA point 0 SNP none {haw10216} 6990 CB6880_redo I 11424335 0 X X -1000 -999.99 -1000 -1000 3 -2 1 @,..tttttt indel 3 nongenic,nongenic,nongenic -351 downstream,-4727 upstream,743 downstream {C27C7.5},{C27C7.3},{C27C7.7} 696 CB6880_redo I 11424337 1 T C 30 1.00 63 38 1 9 10 @.ccgcccccc point 0 nongenic,nongenic,nongenic -4724 upstream,354 into,745 downstream {C27C7.3},{C27C7.5},{C27C7.7} 697 CB6880_redo I 11424338 1 C G 38 1.00 63 30 1 10 11 @.gggggggggg point 0 nongenic,nongenic,nongenic -4723 upstream,355 into,746 downstream {C27C7.3},{C27C7.5},{C27C7.7} 704 CB6880_redo I 11505540 1 T C 129 4.69 63 62 1 8 9 @ccccCCcc. point 0 nongenic,nongenic,nongenic -4516 upstream,-5894 upstream,1581 into {F32B4.1},{K08C9.6},{F32B4.8} 705 CB6880_redo I 11505541 1 C G 95 4.25 63 62 2 8 10 @ggggGGgg., point 0 nongenic,nongenic,nongenic -4515 upstream,-5895 upstream,1580 into {F32B4.1},{K08C9.6},{F32B4.8} 710 CB6880_redo I 11603465 1 A G 255 1.06 63 62 0 15 15 @gGGGGGggggggggG point 0 SNP none {haw10691} 716 CB6880_redo I 11628456 1 A G 255 1.12 63 62 0 28 28 @GGGGggggggggGGgGggggggGggggG point 0 nongenic -1174 upstream {W04G5.3} 717 CB6880_redo I 11657953 1 G T 18 1.00 63 10 1 3 4 @T.Tt point 0 nongenic -17977 upstream {F11A6.1a.2} 736 CB6880_redo I 11713508 1 C T 131 3.88 63 62 5 11 16 @TtttttTTt,,,,t,t point 0 SNP none {haw10896} 743 CB6880_redo I 11883806 1 G C 255 4.06 63 62 0 27 27 @CCcCccccccCCcCcCCCCCCCCCCCC point 0 nongenic,nongenic,nongenic -1215 upstream,-15710 upstream,3453 into {Y47H9C.5b},{Y47H9C.4a,Y47H9C.4b,Y47H9C.4c},{Y47H9C.5a} 745 CB6880_redo I 11905377 1 T C 255 1.00 63 62 0 28 28 @CcCCCccCCCcccCcCCCccCcCCcCCC point 0 SNP none {haw11247} 747 CB6880_redo I 11975955 1 A T 15 3.69 0 14 0 7 7 @ttttttt point 0 nongenic,nongenic -3474 upstream,-4167 upstream {Y53C10A.4},{Y53C10A.15} 748 CB6880_redo I 11975961 1 C A 15 4.19 0 14 0 6 6 @aaaaaa point 0 nongenic,nongenic -3468 upstream,-4173 upstream {Y53C10A.4},{Y53C10A.15} 749 CB6880_redo I 11988102 1 C T 255 1.00 63 62 0 23 23 @TTTttTtTTtTtttTTTtTtTtT point 0 SNP none {haw11443} 750 CB6880_redo I 12044527 1 C T 255 1.00 63 62 0 31 31 @TTtATttttTtTttttTtTTTtTTTtTTttT point 0 nongenic 698 downstream {F58D5.9} 752 CB6880_redo I 12093640 1 T A 134 1.94 50 62 10 22 32 @,.,,.,,.,Aa,AAAAAaAAAAAAAAAAAAAA point 0 nongenic,nongenic -3680 upstream,831 into {Y47H10A.3},{Y47H10A.4} 753 CB6880_redo I 12202747 1 C T 255 1.00 63 62 0 36 36 @TTttttttTTTtttTtTTtTttTTTtTTtttTtttt point 0 missense GCG->GTG[Ala->Val] {C15C6.1} 766 CB6880_redo I 12621661 1 C T 255 1.00 63 62 0 34 34 @TTtTTTtttTTtttttttTtTTttTTtttTtTTt point 0 silent TTC->TTT[Phe->Phe] {T07D10.2} 768 CB6880_redo I 12676428 1 G T 92 1.00 63 62 2 5 7 @,,TTTTT point 0 nongenic -2771 upstream {T26E3.2} 771 CB6880_redo I 12862392 1 T A 255 1.00 63 62 0 36 36 @AAAaaAaaaaaaAaaaaaaaaAAAAaaAaAaAaAaa point 0 SNP none {haw13170} 772 CB6880_redo I 12871730 1 T C 255 1.00 63 62 0 31 31 @CcCccCcccccccccCCcCcCCCCCcCCccc point 0 nongenic,nongenic -2184 upstream,-6853 upstream {Y18D10A.23},{Y18D10A.13} 773 CB6880_redo I 12871733 1 T C 255 1.00 63 62 0 34 34 @CcCccCcccccccccCCcCcCCCCCcCCcccCCC point 0 SNP none {uCE1-1387} 781 CB6880_redo I 12910874 1 C T 250 1.56 63 62 0 18 18 @tttttttTTTTTTTTTTt point 0 nongenic -5555 upstream {Y18D10A.25} 786 CB6880_redo I 13015757 1 T C 255 1.00 63 62 0 28 28 @CCCcccCCCCCCCcccccCCcCCccCcC point 0 nongenic,nongenic,nongenic,nongenic -17855 upstream,3550 into,4308 into,7524 into {W05B5.4},{ZK256.1b},{ZK256.1c},{ZK256.1a} 787 CB6880_redo I 13015767 1 T C 255 1.00 63 62 0 26 26 @CCCCcccccCCcCCccCcCCcCcccc point 0 nongenic,nongenic,nongenic,nongenic -17845 upstream,3560 into,4318 into,7514 into {W05B5.4},{ZK256.1b},{ZK256.1c},{ZK256.1a} 788 CB6880_redo I 13015797 1 T C 255 1.38 63 62 0 24 24 @CcCCcCccccCccCcCcCcCCCcc point 0 nongenic,nongenic,nongenic,nongenic -17815 upstream,3590 into,4348 into,7484 into {W05B5.4},{ZK256.1b},{ZK256.1c},{ZK256.1a} 791 CB6880_redo I 13027747 1 T A 255 1.00 63 62 0 18 18 @aAAAAAaAaaaAaaaAAa point 0 SNP none {haw13445} 792 CB6880_redo I 13080824 1 C T 6 1.00 63 26 2 3 5 @,.tTT point 0 nongenic 610 downstream {Y26D4A.6} 793 CB6880_redo I 13101703 1 A T 7 1.00 63 4 2 2 4 @tt.. point 0 missense AAA->AAT[Lys->Asn] {Y26D4A.21} 795 CB6880_redo I 13108942 1 T A 255 1.00 63 62 0 23 23 @aAAaaAAAAAaaaaAaAaAAAAa point 0 nongenic 825 into {C17H1.14} 796 CB6880_redo I 13118108 1 T C 255 8.38 63 62 1 37 38 @cCCccccCCcCCCcccCCCcccCCcCccCc.CCcCCCC point 0 nongenic -2971 upstream {C17H1.9} 797 CB6880_redo I 13154593 1 G A 3 2.31 0 8 2 4 6 @.aaaA. point 0 nongenic,nongenic 666 downstream,917 downstream {F22G12.4},{F22G12.3} 799 CB6880_redo I 13168446 1 C G 255 1.00 63 62 0 35 35 @GGgGggggGGGgGgGGgGGggGGGggggGggGggg point 0 missense,SNP CAC->GAC[His->Asp],none {F22G12.5},{haw13520} 6998 CB6880_redo I 13316523 0 X X -1000 -999.99 -1000 -1000 4 -1 3 @...,cc indel 5 nongenic,nongenic,nongenic -1576 upstream,-2170 downstream,-8827 upstream {T04D3.3b},{T04D3.3a},{T04D3.4} 805 CB6880_redo I 13419807 1 T A 255 1.00 63 62 0 19 19 @aaAaaAAaAaAAaaaaaAa point 0 SNP none {haw14087} 806 CB6880_redo I 13453792 1 T C 3 9.44 0 0 5 7 12 @C.,.ccccc.,c point 0 nongenic 962 downstream {Y48G10A.6} 807 CB6880_redo I 13482732 1 G T 203 1.00 63 62 0 9 9 @ttttttTTt point 0 nongenic,nongenic,nongenic -6815 upstream,-8558 upstream,4661 into {Y48G10A.1.1},{Y48G10A.3},{Y48G10A.2} 812 CB6880_redo I 13491128 1 A T 121 1.00 63 62 0 5 5 @tTTTT point 0 three_prime_UTR none {Y48G10A.1.1} 813 CB6880_redo I 13491129 1 A T 126 1.00 63 62 0 6 6 @tTTTTT point 0 three_prime_UTR none {Y48G10A.1.1} 163713 CB6880_redo I 13540695 53 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered non-exonic, 1651 to 1704 bp into {Y87G2A.3} 817 CB6880_redo I 13545596 1 G T 29 1.38 63 62 8 9 17 @..,,ttTttT,.tt,.t point 0 nongenic -419 upstream {Y87G2A.4} 823 CB6880_redo I 13584208 1 A C 187 1.81 63 62 0 12 12 @CcCcccCcccCc point 0 nongenic 1077 into {Y87G2A.9} 838 CB6880_redo I 13736695 1 T C 59 1.00 63 18 0 4 4 @cccC point 0 nongenic,nongenic,nongenic,nongenic,nongenic -10152 upstream,-4717 upstream,1487 into,1738 into,174 into {Y6B3B.7},{Y6B3B.10},{Y6B3B.9},{Y6B3B.9b.2},{Y6B3B.9b.1} 842 CB6880_redo I 13860835 1 G C 149 1.00 63 62 0 5 5 @cCcCC point 0 SNP none {haw14643} 844 CB6880_redo I 13878129 1 A T 14 3.25 0 4 0 4 4 @ttTt point 0 nongenic 9297 into {W04A8.7} 845 CB6880_redo I 13878134 1 A T 22 3.31 0 18 0 9 9 @ttTtTttTt point 0 nongenic 9292 into {W04A8.7} 847 CB6880_redo I 13985036 1 A G 255 1.00 63 62 0 32 32 @GgGgGggGggggggGGgGGgggGGgGggggGG point 0 missense,SNP AAA->GAA[Lys->Glu],none {Y71A12B.17},{haw14760} 849 CB6880_redo I 14002230 1 T G 64 4.19 63 62 11 21 32 @ggGgGGGGGgggggg.G.G,Gg,,,,,,GG,, point 0 nongenic -2215 upstream {Y71A12B.12a.1} 851 CB6880_redo I 14002398 1 A G 255 1.00 63 62 0 24 24 @tGgGGGgGgGggGgGgGGgGGGgg point 0 nongenic -2047 upstream {Y71A12B.12a.1} 852 CB6880_redo I 14048880 1 A G 31 1.50 63 62 4 4 8 @..gg,g.G point 0 nongenic,nongenic,nongenic -875 upstream,793 into,809 into {Y71A12C.2},{F47G4.7.2},{F47G4.7.1} 853 CB6880_redo I 14049137 1 T C 255 1.00 63 62 1 32 33 @CCCCccc,CCCcCCCCCCCCCccCCCcccCccC point 0 SNP none {uCE1-1488} 867 CB6880_redo I 14097922 1 T C 250 1.00 63 62 0 14 14 @cCCccCCCCCcccc point 0 nongenic,nongenic,nongenic -1588 upstream,-3341 upstream,381 into {Y63D3A.2},{Y63D3A.5.1},{Y63D3A.4} 868 CB6880_redo I 14121557 1 T C 111 1.00 63 46 2 6 8 @CcCCcC.. point 0 nongenic 2813 into {K03D10.3} 869 CB6880_redo I 14121560 1 C A 47 1.00 63 62 3 4 7 @AAaA... point 0 nongenic 2816 into {K03D10.3} 163714 CB6880_redo I 14137907 127 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered non-exonic, 4158 to 4285 bp into {K03D10.1} 888 CB6880_redo I 14347419 1 C A 186 1.00 63 62 0 7 7 @aaAAaaa point 0 nongenic,nongenic -3626 upstream,81 downstream {Y105E8A.1},{Y105E8A.2} 890 CB6880_redo I 14362092 1 G T 255 1.00 63 62 0 14 14 @TtttttTttTtttT point 0 SNP none {haw15184} 891 CB6880_redo I 14363822 1 A T 61 4.88 32 62 0 11 11 @tTTTTTTTTTT point 0 nongenic,nongenic -5509 upstream,3757 into {Y105E8A.2},{Y105E8A.3} 892 CB6880_redo I 14363832 1 T C 56 4.44 32 56 0 14 14 @CCCCCCCCCCCCCC point 0 nongenic,nongenic -5519 upstream,3747 into {Y105E8A.2},{Y105E8A.3} 7003 CB6880_redo I 14376947 0 X X -1000 -999.99 -1000 -1000 6 -4 2 @.,,,..Gg indel 0 nongenic -942 upstream {Y105E8A.5} 163715 CB6880_redo I 14391801 88 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered non-exonic, 1481 to 1569 bp into {Y105E8A.7a,Y105E8A.7b} 163716 CB6880_redo I 14425422 265 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered,uncovered,uncovered,uncovered non-exonic, 3022 to 3287 bp into,non-exonic, 3255 to 3520 bp into,non-exonic, 7194 to 7459 bp into,non-exonic, 7238 to 7503 bp into {Y105E8A.10c.1},{Y105E8A.10b},{Y105E8A.10c.2},{Y105E8A.10a} 902 CB6880_redo I 14431046 1 C A 177 1.00 63 62 0 10 10 @AaTAAAAaAA point 0 SNP none {haw15294} 904 CB6880_redo I 14480479 1 G A 255 1.00 63 62 0 20 20 @aAaAaaAAAAAaAaaAaAAa point 0 SNP none {haw15337} 905 CB6880_redo I 14518026 1 C G 240 1.38 63 62 0 13 13 @gGggGGGGGGGGG point 0 SNP none {haw15420} 914 CB6880_redo I 14557401 1 C G 12 1.00 63 0 0 4 4 @GGGG point 0 nongenic,nongenic 5227 into,5320 into {Y105E8A.23b},{Y105E8A.23a} 920 CB6880_redo I 14574065 1 A G 22 2.75 0 20 0 27 27 @ggGGGgggGGGgGggGggggggggggg point 0 nongenic,nongenic,nongenic -8233 upstream,4561 into,6747 into {Y105E8A.23a,Y105E8A.23b},{Y105E8A.24b},{Y105E8A.24a} 925 CB6880_redo I 14586339 1 A C 255 1.00 63 62 0 22 22 @cCcccCccccCcCCccCccCcc point 0 SNP none {haw15496} 926 CB6880_redo I 14610358 1 C T 175 2.12 63 62 0 10 10 @tttttttttt point 0 nongenic -6231 upstream {Y105E8A.25} 932 CB6880_redo I 14610447 1 A G 179 1.44 63 62 0 12 12 @GGGGGGGGGGGG point 0 nongenic -6320 upstream {Y105E8A.25} 933 CB6880_redo I 14624752 1 A G 5 1.00 63 62 4 5 9 @GGGGG,,,. point 0 nongenic,nongenic,nongenic,nongenic,nongenic -4131 upstream,2336 into,3594 into,671 into,673 into {Y105E8B.11},{Y105E8B.1b.2,Y105E8B.1b.3,Y105E8B.1d},{Y105E8B.1a,Y105E8B.1f},{Y105E8B.1b.4,Y105E8B.1c,Y105E8B.1e.3},{Y105E8B.1b.1,Y105E8B.1e.1,Y105E8B.1e.2} 163717 CB6880_redo I 14648774 94 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered non-exonic, 1005 to 1099 bp into {Y105E8B.4} 935 CB6880_redo I 14668307 1 G C 45 1.00 63 2 0 6 6 @CCCCCC point 0 nongenic,nongenic 3870 into,3872 into {Y105E8B.8b.1},{Y105E8B.8a,Y105E8B.8b.2,Y105E8B.8c} 936 CB6880_redo I 14668309 1 G C 3 1.00 63 10 1 4 5 @CCCC, point 0 nongenic,nongenic 3872 into,3874 into {Y105E8B.8b.1},{Y105E8B.8a,Y105E8B.8b.2,Y105E8B.8c} 939 CB6880_redo I 14673224 1 T G 3 2.00 0 0 6 8 14 @GG,.G.GGGGG... point 0 nongenic,nongenic 1372 into,1560 into {Y105E8B.8a,Y105E8B.8b.1,Y105E8B.8b.2},{Y105E8B.8c} 941 CB6880_redo I 14673230 1 C G 3 2.00 0 0 4 5 9 @GGGGG..., point 0 nongenic,nongenic 1366 into,1554 into {Y105E8B.8a,Y105E8B.8b.1,Y105E8B.8b.2},{Y105E8B.8c} 944 CB6880_redo I 14675915 1 A T 255 1.00 63 62 0 24 24 @TTtTTTTTTTtTTTtttttTTTTT point 0 SNP none {haw15602} 966 CB6880_redo I 14918627 1 A C 255 1.00 63 62 0 27 27 @cCcCCcCCcCccccCcCCcCCCcCCCC point 0 SNP none {haw15977} 967 CB6880_redo I 15040328 1 T C 255 1.00 63 62 0 29 29 @CcCCcCcccccCcccccCCcccCccCccc point 0 silent,SNP ATT->ATC[Ile->Ile],none {F31C3.2a,F31C3.2b},{haw16048} 984 CB6880_redo I 15071566 1 T C 16 2.38 0 16 0 9 9 @CCCCCCCCC point 0 nongenic -12575 upstream {F31C3.6a} 985 CB6880_redo I 15071578 1 C G 16 2.31 0 16 0 11 11 @GGGGGGGGGGG point 0 nongenic -12587 upstream {F31C3.6a} 986 CB6880_redo I 15071623 1 G A 18 2.69 0 18 0 7 7 @AAAAAAa point 0 nongenic -12632 upstream {F31C3.6a} 987 CB6880_redo I 15071625 1 C G 18 2.69 0 18 0 7 7 @GGGGGGg point 0 nongenic -12634 upstream {F31C3.6a} 988 CB6880_redo I 15071631 1 A G 19 2.38 24 2 0 10 10 @GGGGGGgGGG point 0 nongenic -12640 upstream {F31C3.6a} 989 CB6880_redo I 15071665 1 A G 15 2.00 24 2 0 7 7 @GGGGGGG point 0 nongenic -12674 upstream {F31C3.6a} 991 CB6880_redo I 15071667 1 A G 15 2.00 24 2 0 7 7 @GGGGGGG point 0 nongenic -12676 upstream {F31C3.6a} 992 CB6880_redo I 15071668 1 G A 3 2.38 24 2 0 8 8 @AAAAAACa point 0 nongenic -12677 upstream {F31C3.6a} 993 CB6880_redo I 15071671 1 C G 19 2.31 24 2 0 11 11 @GGGGGGGgGGG point 0 nongenic -12680 upstream {F31C3.6a} 994 CB6880_redo I 15071724 1 A G 8 3.25 32 2 2 71 73 @GGGGGGGGGGGGGGGGGGGGgGGGGGGGGGGGGGGGGGGgGGGGGGGGGGGGgGGGGgGGGgGGgg.G,GGgG point 0 nongenic -12733 upstream {F31C3.6a} 996 CB6880_redo II 213640 1 C G 12 1.00 63 12 2 3 5 @gGg.. point 0 silent CCG->CCC[Pro->Pro] {F48A11.4} 997 CB6880_redo II 213641 1 G C 12 1.00 63 12 2 3 5 @cCc.. point 0 missense CCG->CGG[Pro->Arg] {F48A11.4} 7009 CB6880_redo II 300529 0 X X -1000 -999.99 -1000 -1000 4 -3 1 @,,c,,cc indel 0 nongenic,nongenic -1875 upstream,-426 downstream {K01A2.5},{K01A2.6} 1006 CB6880_redo II 498648 1 C T 255 1.00 63 62 0 13 13 @TTTtttttTTTtT point 0 missense TCT->TTT[Ser->Phe] {W07E6.3} 163720 CB6880_redo II 503923 713 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered non-exonic, 1378 to 2091 bp into {T27A1.1} 7010 CB6880_redo II 523339 0 X X -1000 -999.99 -1000 -1000 3 -1 2 @,,.Gggg indel 0 nongenic,nongenic,nongenic -3251 upstream,-738 downstream,-746 downstream {T27A1.4},{T27A1.5a.2,T27A1.5b.2},{T27A1.5a.1,T27A1.5b.1} 1009 CB6880_redo II 542601 1 C T 255 1.00 63 62 1 23 24 @tt,tttttttTtTTttttTtTtTt point 0 nongenic -4101 upstream {C09E8.3.1} 1010 CB6880_redo II 595627 1 G A 18 1.00 63 18 1 3 4 @,AAa point 0 silent GGC->GGT[Gly->Gly] {W04H10.3a,W04H10.3b.1,W04H10.3b.2,W04H10.3b.3} 1011 CB6880_redo II 595628 1 C A 18 1.00 63 18 1 3 4 @,AAa point 0 nongenic,nongenic,nongenic,nongenic,nongenic,splice_acceptor -926 upstream,-9848 upstream,301 into,420 into,424 into,none {W08F4.11},{W04H10.2},{W04H10.3a,W04H10.3b.3},{W04H10.3b.2},{W04H10.3b.1},{W04H10.3a,W04H10.3b.1,W04H10.3b.2,W04H10.3b.3} 1018 CB6880_redo II 646915 1 C T 255 1.00 63 62 0 28 28 @ttttTTtttTtTTtttTTTttttTtTTt point 0 nongenic,nongenic,nongenic -5084 upstream,-7420 upstream,3459 into {K07E8.5},{K07E8.6},{K07E8.7} 1062 CB6880_redo II 777128 1 G A 255 2.25 63 62 0 27 27 @aAAaaaaaaAAaaaAaAAAaAaaaaAA point 0 nongenic 406 downstream {Y39F10A.1} 1067 CB6880_redo II 792344 1 G C 3 1.19 63 0 2 4 6 @C..ccc point 0 nongenic,nongenic -355 upstream,-7744 upstream {F46F5.1},{F46F5.14} 1068 CB6880_redo II 846686 1 C G 76 1.00 63 60 1 5 6 @GgGGg, point 0 nongenic,nongenic -993 upstream,210 downstream {F28A10.7},{F28A10.6} 1069 CB6880_redo II 846687 1 T C 61 1.00 63 62 1 3 4 @CCc, point 0 nongenic,nongenic -994 upstream,209 downstream {F28A10.7},{F28A10.6} 1072 CB6880_redo II 851172 1 T C 3 5.19 0 0 1 4 5 @CCCC, point 0 nongenic,nongenic -511 upstream,489 downstream {F28A10.5},{Y46B2A.2} 1074 CB6880_redo II 925396 1 C T 255 1.00 63 62 0 27 27 @TTttTTtTTttTTTttTTtTtttttTT point 0 nongenic 241 downstream {R07C3.6} 1075 CB6880_redo II 935804 1 A G 255 1.00 63 62 0 41 41 @gggggGGgGGggGGgGGGggGggggGgggGGGGggGgGGGG point 0 silent AAA->AAG[Lys->Lys] {R07C3.4} 1076 CB6880_redo II 959061 1 A T 255 1.00 63 62 0 38 38 @TtttttttttTTtTTtTttTttttTTTtTTtTTTTttT point 0 nongenic,nongenic -1472 upstream,95 into {C32B5.7},{C32B5.16} 1077 CB6880_redo II 1027149 1 C T 150 1.00 63 62 0 6 6 @TTTTtt point 0 silent TTC->TTT[Phe->Phe] {M01D1.2a,M01D1.2b} 1081 CB6880_redo II 1027179 1 C A 67 2.00 63 62 0 4 4 @aaaa point 0 silent GCC->GCA[Ala->Ala] {M01D1.2a,M01D1.2b} 1083 CB6880_redo II 1043004 1 C T 255 1.00 63 62 0 34 34 @tTtTtTTTTTTtTTTTtTtTttTTTTtTTtTTTT point 0 missense GGT->AGT[Gly->Ser] {M01D1.10} 1084 CB6880_redo II 1065950 1 A T 255 1.25 63 62 0 18 18 @ttTTTTtTttTttttTTt point 0 nongenic,nongenic,nongenic -4695 upstream,-5141 upstream,379 into {K02E7.12.1},{K02E7.9},{K02E7.10} 1085 CB6880_redo II 1109662 1 T G 8 1.00 63 22 4 5 9 @,,,.gggGg point 0 nongenic,nongenic -2732 upstream,816 into {T13B5.4},{T13B5.5} 1086 CB6880_redo II 1109664 1 G A 23 1.00 63 8 4 5 9 @,,,.aaaAa point 0 nongenic,nongenic -2734 upstream,818 into {T13B5.4},{T13B5.5} 1091 CB6880_redo II 1333323 1 C G 176 1.25 63 62 0 8 8 @ggggggGG point 0 nongenic,nongenic -3747 upstream,6323 into {F56D12.4b,F56D12.4c.2},{F56D12.4a} 1092 CB6880_redo II 1388553 1 G A 45 1.00 63 12 2 6 8 @a,AAt,tt point 0 nongenic,nongenic -3166 upstream,1660 into {F54D12.7},{F54D12.3} 1093 CB6880_redo II 1388554 1 T G 13 1.00 63 44 4 4 8 @gGGG.,.. point 0 nongenic,nongenic -3167 upstream,1661 into {F54D12.7},{F54D12.3} 1094 CB6880_redo II 1388899 1 G A 251 1.00 63 62 0 13 13 @aAAAAAaAAaaaA point 0 nongenic,nongenic -3512 upstream,2006 into {F54D12.7},{F54D12.3} 1095 CB6880_redo II 1392498 1 T C 255 1.00 63 62 0 22 22 @CCCCccCcCCCCCCcCcccCcc point 0 nongenic,nongenic 924 downstream,995 downstream {F54D12.3},{F54D12.11} 1096 CB6880_redo II 1426275 1 T C 4 1.00 63 0 1 4 5 @C,ccc point 0 nongenic,nongenic,nongenic -12227 upstream,-2600 upstream,512 into {Y51H7C.3},{Y51H7C.10},{Y51H7C.11} 1116 CB6880_redo II 1462193 1 G A 160 2.06 63 62 4 23 27 @aAAA.aaa.AaaA.aAAAaAAAAAAA. point 0 nongenic -879 upstream {Y51H7C.15} 1125 CB6880_redo II 1580402 1 C G 23 1.00 63 24 1 3 4 @,ggg point 0 nongenic -424 upstream {T07H3.3a,T07H3.3b} 1126 CB6880_redo II 1580403 1 G A 25 1.00 63 22 1 3 4 @,aaa point 0 nongenic -425 upstream {T07H3.3a,T07H3.3b} 1127 CB6880_redo II 1590685 1 G A 255 2.00 63 62 0 16 16 @AaaaAAAaAaAaAAaa point 0 nongenic -734 upstream {T07H3.7} 1129 CB6880_redo II 1605235 1 C T 5 3.31 50 62 15 27 42 @.tt......tt.tt..t.TTtttt.tt..tttttttt.tttt point 0 nongenic,nongenic 566 into,620 downstream {C08E3.3},{T07H3.1} 1134 CB6880_redo II 1637578 1 C G 151 1.00 63 62 0 6 6 @GgggGG point 0 nongenic 884 into {ZC204.4a,ZC204.4b} 1135 CB6880_redo II 1637579 1 G C 139 1.00 63 62 0 7 7 @AcccCCC point 0 nongenic 885 into {ZC204.4a,ZC204.4b} 1145 CB6880_redo II 1848047 1 T C 58 1.00 63 22 4 5 9 @CCccC..,. point 0 missense AAG->AGG[Lys->Arg] {C52E2.6} 1146 CB6880_redo II 1850708 1 T C 255 1.00 63 62 0 36 36 @cCccccCcCccCcCcccCcCCccccCCcCcCcCccC point 0 nongenic,nongenic -307 upstream,-537 upstream {C52E2.7},{C52E2.3} 1152 CB6880_redo II 1906691 1 G T 11 1.69 63 10 1 3 4 @TTT, point 0 nongenic,nongenic -1471 upstream,629 downstream {F52C6.5},{C46F9.1} 1153 CB6880_redo II 1906692 1 A T 11 1.69 63 10 1 3 4 @TTT, point 0 nongenic,nongenic -1470 upstream,630 downstream {F52C6.5},{C46F9.1} 1154 CB6880_redo II 1906693 1 T G 11 1.69 63 10 1 3 4 @GGG, point 0 nongenic,nongenic -1469 upstream,631 downstream {F52C6.5},{C46F9.1} 1163 CB6880_redo II 2001658 1 A C 185 1.81 63 62 1 30 31 @CCCCCCCCCCCCCCCCCCCCCCCCC,CCcCC point 0 nongenic,nongenic -1719 upstream,-836 upstream {F59H6.5},{C40D2.4} 1164 CB6880_redo II 2023350 1 G A 37 4.19 29 58 3 25 28 @aaaaa,Aa,aA,AaAAAaAAAAAAAaAa point 0 nongenic,nongenic -46 upstream,907 downstream {F59H6.7},{F59H6.2} 1168 CB6880_redo II 2079814 1 G A 255 1.00 63 62 0 22 22 @tAaAaaAAaAAaaAaaAAaAAA point 0 SNP none {haw19273} 1169 CB6880_redo II 2119161 1 A G 42 2.00 63 40 0 4 4 @GGGG point 0 nongenic,nongenic -2265 upstream,1011 into {R52.7},{R52.8} 1174 CB6880_redo II 2177647 1 T G 255 1.00 63 62 0 16 16 @gGGgGGgGgGGGgGGg point 0 nongenic,nongenic,nongenic -111 upstream,-2356 upstream,755 into {C33C12.3b},{C33C12.7},{C33C12.3a} 1175 CB6880_redo II 2190806 1 T C 255 1.00 63 62 0 28 28 @CCCCCccCCcCccCCccCCcCCcCCcCc point 0 nongenic -1347 upstream {C33C12.9} 1176 CB6880_redo II 2209565 1 A T 255 1.00 63 62 0 43 43 @ttttTTTTTtTtTTTTTtTttTtTTtTTtTTTTttTTtttTtt point 0 nongenic,nongenic -5434 upstream,1453 into {Y59C2A.2},{Y59C2A.1} 1177 CB6880_redo II 2209701 1 G A 255 1.00 63 62 0 24 24 @AaaaAaaAaaaaaaaaAaaAaAAA point 0 missense GGA->GAA[Gly->Glu] {Y59C2A.1} 1178 CB6880_redo II 2225250 1 G T 44 1.69 63 40 0 4 4 @ttTT point 0 nongenic,nongenic,nongenic,nongenic -1708 upstream,460 into,462 into,569 downstream {F54A3.4},{F54A3.5.2},{F54A3.5.1},{F54A3.6} 1186 CB6880_redo II 2256186 1 G A 255 1.12 63 62 0 39 39 @AaAaaAAAaAAAAaaAAAaaaAAaaaaAAAAAaAAaAAA point 0 nongenic -120 upstream {K09F6.3} 1187 CB6880_redo II 2269266 1 A G 3 1.69 63 0 2 11 13 @NGGCg.g.ggggg point 0 nongenic,nongenic -3829 upstream,1089 into {K09F6.4},{K09F6.2} 1190 CB6880_redo II 2389996 1 G A 255 1.00 63 62 0 42 42 @AaaaAAAAaAAaaaaaaaaaAAaaaaaaaaAaAaaaAaaaaA point 0 nongenic,nongenic -3285 upstream,414 into {F16G10.9},{F16G10.10} 7018 CB6880_redo II 2410999 0 X X -1000 -999.99 -1000 -1000 6 -2 4 @...,,t,tt indel 5 frameshift none {F42G2.4} 1192 CB6880_redo II 2472169 1 C T 157 1.00 63 62 0 10 10 @tttttttttt point 0 SNP none {haw20431} 1193 CB6880_redo II 2549027 1 G A 255 1.00 63 62 0 46 46 @AaAAaAAaaaaAAaAAaAAAaAaAaAcaaAAaAAaAAAAAAAaAaa point 0 missense GGC->GAC[Gly->Asp] {K02F6.3} 1194 CB6880_redo II 2564358 1 C G 66 1.00 63 18 1 5 6 @ggGGG, point 0 nongenic,nongenic -679 upstream,-917 upstream {K02F6.9},{F09D1.1} 1195 CB6880_redo II 2564360 1 T C 18 1.00 63 20 1 5 6 @ccCCC, point 0 nongenic,nongenic -681 upstream,-915 upstream {K02F6.9},{F09D1.1} 1197 CB6880_redo II 2576882 1 G A 255 1.00 63 62 0 20 20 @AaAAaAAAAAAaAaaaaAaa point 0 nongenic 977 downstream {F09D1.1} 1198 CB6880_redo II 2593478 1 C G 4 5.19 0 0 1 4 5 @Gg,gg point 0 nongenic 574 downstream {F33H12.6} 1203 CB6880_redo II 2669850 1 A T 255 1.56 63 62 1 27 28 @tttttGttTGTTTCtttTTtttT.tTTt point 0 nongenic 702 downstream {F22E5.16} 1204 CB6880_redo II 2678739 1 C A 40 1.00 63 62 1 4 5 @AaaA, point 0 missense CCC->ACC[Pro->Thr] {F22E5.17} 1205 CB6880_redo II 2703217 1 C T 243 1.00 63 62 0 18 18 @tttGtGttTtttTtTTtt point 0 nongenic,nongenic -359 upstream,203 downstream {Y47G7B.3},{Y47G7B.1} 1207 CB6880_redo II 2723817 1 G A 255 1.00 63 62 0 33 33 @AAAAAaaaAAaaAAaAAaaaaaaAaaAAAaAaa point 0 nongenic,nongenic -6381 upstream,1725 into {T05A8.3},{T05A8.4} 1209 CB6880_redo II 2799760 1 A T 224 1.00 63 62 0 9 9 @TttTttTTT point 0 SNP none {haw21113} 1210 CB6880_redo II 2843349 1 G C 90 1.00 63 62 1 7 8 @cccc,ccc point 0 nongenic -161 upstream {Y110A2AL.7} 163722 CB6880_redo II 2900770 85 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered non-exonic, 229 to 314 bp into {Y110A2AM.4} 1220 CB6880_redo II 2900872 1 C A 119 1.00 63 62 0 4 4 @aAAA point 0 three_prime_UTR none {Y110A2AM.4} 1221 CB6880_redo II 2900873 1 G T 119 1.00 63 62 0 4 4 @tTTT point 0 three_prime_UTR none {Y110A2AM.4} 1223 CB6880_redo II 2912494 1 A T 67 2.00 63 8 0 4 4 @ttTt point 0 nongenic,nongenic -8495 upstream,1079 into {Y110A2AM.1},{Y110A2AR.2} 1236 CB6880_redo II 2997919 1 G T 47 2.00 63 14 2 2 4 @TT.. point 0 nongenic,nongenic -759 upstream,904 into {K08A2.1.2},{K08A2.1.1} 1237 CB6880_redo II 2997920 1 A G 15 2.00 63 46 2 2 4 @GG.. point 0 nongenic,nongenic -758 upstream,905 into {K08A2.1.2},{K08A2.1.1} 1238 CB6880_redo II 2997924 1 C A 47 2.00 63 6 2 2 4 @AA.. point 0 nongenic,nongenic -754 upstream,909 into {K08A2.1.2},{K08A2.1.1} 1244 CB6880_redo II 3045939 1 C T 255 1.00 63 62 0 13 13 @tTttTTTtTtttt point 0 silent AAC->AAT[Asn->Asn] {B0454.4} 1245 CB6880_redo II 3101327 1 C T 255 1.00 63 62 0 25 25 @TTttTTtTTTTTTtttTtTttTttT point 0 nongenic,nongenic -685 upstream,-985 upstream {Y25C1A.12},{Y25C1A.4} 1246 CB6880_redo II 3159620 1 A T 77 7.94 63 62 4 10 14 @ttttt,,tt.t,tt point 0 nongenic -539 upstream {Y27F2A.7} 1253 CB6880_redo II 3168542 1 T G 62 2.00 63 2 1 3 4 @,GGG point 0 nongenic,nongenic -9461 upstream,219 downstream {Y27F2A.7},{Y27F2A.5} 1257 CB6880_redo II 3194393 1 C T 255 1.25 63 62 0 37 37 @tTTtttTTtttttTTTttTTTTTTtTtTttTtttTtt point 0 missense GAA->AAA[Glu->Lys] {ZC239.7} 1259 CB6880_redo II 3278964 1 T A 255 1.00 63 62 0 37 37 @aAAAaAAaAAAAaaaaaaaaaaAaAAAAaaaaAAAaa point 0 SNP none {haw22209} 1279 CB6880_redo II 3532191 1 G C 200 5.81 63 62 0 19 19 @CcCCCCCCCCCCCCCCCCC point 0 nongenic,nongenic,nongenic -3680 upstream,404 downstream,692 downstream {W09G10.3},{W09G10.4a},{W09G10.4b} 1281 CB6880_redo II 3539934 1 G T 16 1.00 63 0 1 3 4 @ttt, point 0 nongenic,nongenic,nongenic,nongenic -10710 upstream,-11423 upstream,4768 into,6492 into {W10G11.19},{W09G10.3},{W09G10.4b},{W09G10.4a} 1284 CB6880_redo II 3650567 1 C A 255 1.00 63 62 0 33 33 @AaaaAAAaAaaaAAAAaaaaaaAaAAAaaaaAA point 0 nongenic -682 upstream {F19B10.11} 1285 CB6880_redo II 3659129 1 G C 255 1.00 63 62 0 35 35 @ccccCCCccCCCccCCCCcCCcccCCcCcCcCcCC point 0 nongenic -948 upstream {F19B10.4} 1286 CB6880_redo II 3692041 1 C T 255 1.00 63 62 0 46 46 @TTttTttTtTTTttttTttTTtTTTtTTTttTTtTTtTTtTttTTT point 0 nongenic -1300 upstream {F40H7.4} 1287 CB6880_redo II 3721646 1 C T 255 1.00 63 62 0 21 21 @tTtTtTTttTtttgTgtTgtt point 0 silent AAC->AAT[Asn->Asn] {C46E10.3} 1288 CB6880_redo II 3796556 1 C T 62 2.25 63 62 47 208 255 @G.gT.TGTTTG.ttt.,TTTT.ttT,,.TT,.,,.g,G,..gT,GTttt...,GGTt..GGT,TTGGGTtGTGGTTTGTTGGtTTTG,TTTT,TTgt.g point 0 silent ACC->ACT[Thr->Thr] {Y8A9A.2} 7029 CB6880_redo II 3796666 0 X X -1000 -999.99 -1000 -1000 15 51 66 @,,,,,,....gggaagg.gggggg.gG..GGGGGGGGGaag.g indel 0 inframe none {Y8A9A.2} 1293 CB6880_redo II 3797014 1 T C 4 7.00 0 0 0 6 6 @acCccc point 0 missense CTG->CCG[Leu->Pro] {Y8A9A.2} 1294 CB6880_redo II 3797053 1 A T 3 6.69 27 14 52 77 129 @....,,,..t,.,T,...tttt,t...Ct.t.t,tt.t,.tt.t,,c.,,,tttttt,..tt,t.t.ttt.tttttttt.ttt.ttt,tt..t.ttttt point 0 missense CAT->CTT[His->Leu] {Y8A9A.2} 1296 CB6880_redo II 3797266 1 T A 66 3.81 60 54 30 56 86 @,.aaaaCCCaaaaaAa,a..aa,aa..A.aaaa,a,,,.a,.aAA.a.A..aaA.a...aAAAa..Aa,AAaaaa,AAaaA.aAa. point 0 missense CTG->CAG[Leu->Gln] {Y8A9A.2} 1297 CB6880_redo II 3797353 1 A T 255 3.38 63 62 31 67 98 @T.T.tTtTTT.tTTt....T..t....TTT...TTtt.ttttTTttTtttTtTtTttTTtTTt..tTt.ttt.TT.t.t.t..tT.t.ttttt.T..t point 0 missense CAT->CTT[His->Leu] {Y8A9A.2} 1333 CB6880_redo II 4024916 1 C T 255 1.00 63 62 0 15 15 @ttTTTtTttTttTTt point 0 nongenic,nongenic -1074 upstream,-3654 upstream {K07D4.5},{K07D4.9} 1336 CB6880_redo II 4142478 1 C G 255 1.00 63 62 0 20 20 @GGggGGGgGGgGgGgGgggG point 0 nongenic -331 upstream {F56D3.1.2} 1337 CB6880_redo II 4142481 1 G A 255 1.00 63 62 0 23 23 @AaaAAAaAAaAaAaAaaaAAaaa point 0 nongenic -328 upstream {F56D3.1.2} 1338 CB6880_redo II 4142501 1 A T 255 1.00 63 62 0 31 31 @tttTTttttTttTTtTTTTttttTtttTtTt point 0 nongenic -308 upstream {F56D3.1.2} 1339 CB6880_redo II 4245142 1 T G 3 1.00 63 10 2 2 4 @,gg. point 0 nongenic,nongenic,nongenic -7903 upstream,318 downstream,452 downstream {C16A11.1},{C16A11.2a.1},{C16A11.2a.2,C16A11.2b.1,C16A11.2b.2} 1340 CB6880_redo II 4251041 1 G A 255 1.00 63 62 0 44 44 @AAAaaAaaAaAaAaaAaAaaaaaAAaaAaaaAaAaaaaaaaAaa point 0 nongenic -2004 upstream {C16A11.1} 7032 CB6880_redo II 4273307 0 X X -1000 -999.99 -1000 -1000 4 1 5 @,.,,CcC indel 0 nongenic,nongenic -14531 upstream,-2900 upstream {C16A11.8},{C01F1.4} 1344 CB6880_redo II 4296769 1 C G 55 1.00 63 56 1 3 4 @ggg. point 0 nongenic,nongenic,nongenic -1534 upstream,-8565 upstream,1676 into {C01F1.3b},{C01F1.6},{C01F1.3a} 1345 CB6880_redo II 4296770 1 A C 56 1.00 63 54 1 3 4 @ccc. point 0 nongenic,nongenic,nongenic -1533 upstream,-8566 upstream,1677 into {C01F1.3b},{C01F1.6},{C01F1.3a} 1352 CB6880_redo II 4468036 1 G T 255 1.00 63 62 0 23 23 @TTTTttTTTTtTTttTtttTTTt point 0 SNP none {haw24704} 1353 CB6880_redo II 4468046 1 G T 255 1.00 63 62 0 29 29 @ttTTTTtTTttTtttTTTtTTtTTTTTTT point 0 nongenic,nongenic -114 upstream,159 downstream {W06B4.2},{W06B4.3} 1354 CB6880_redo II 4484308 1 T C 116 1.00 63 62 1 6 7 @cCcCCC, point 0 nongenic -595 upstream {T05C1.2} 1356 CB6880_redo II 4499374 1 G C 255 1.00 63 62 0 24 24 @CcCCCCCcCCCCcCCCCCCCcCCC point 0 SNP none {haw24761} 1360 CB6880_redo II 4625803 1 C T 255 1.00 63 62 0 38 38 @ttttTttTtTttTtttttTTtTTTTTttTTtttTttTt point 0 missense CGT->TGT[Arg->Cys] {F35D11.2a.1,F35D11.2a.2,F35D11.2b} 1363 CB6880_redo II 4642240 1 C T 46 7.44 31 2 2 13 15 @Aa..TtTtTtTtttt point 0 nongenic,nongenic -3910 upstream,-6841 upstream {F35D11.11a,F35D11.11b,F35D11.11c},{Y74E4A.1b} 1370 CB6880_redo II 4642426 1 A T 5 9.38 31 62 45 52 97 @.,.G,,,.......,T,.,T,.G,..Tt.ttC,,T,t,ttt,..Ttt.,,tttT,,TtttTttCtttt.tCTTt.tTTttTtT,..T,.,t.t,TTt point 0 nongenic,nongenic -4096 upstream,-6655 upstream {F35D11.11a,F35D11.11b,F35D11.11c},{Y74E4A.1b} 1374 CB6880_redo II 4643795 1 A T 5 5.31 20 0 2 2 4 @Tt.. point 0 nongenic,nongenic -5286 upstream,-5465 upstream {Y74E4A.1b},{F35D11.11a,F35D11.11b,F35D11.11c} 1384 CB6880_redo II 4782898 1 G A 44 1.00 63 62 3 4 7 @,,,AaaA point 0 nongenic -1561 upstream {F26G1.6} 1385 CB6880_redo II 4782899 1 A G 73 1.00 63 44 3 5 8 @,,,GggGg point 0 nongenic -1562 upstream {F26G1.6} 1394 CB6880_redo II 4929759 1 C A 255 1.25 63 62 0 30 30 @AAaaAaaAaaAAAaAAaAaAaAaAaAaAAA point 0 SNP none {haw25053} 1395 CB6880_redo II 4931626 1 C T 255 1.44 63 62 0 40 40 @TttttTttTTTTTTtTttttttTTTtTTTTTTTTtTtttt point 0 missense GCC->GTC[Ala->Val] {ZK546.7} 1396 CB6880_redo II 4964576 1 C A 255 1.00 63 62 0 21 21 @AaaAAAaaaaaAAaAAAaAaa point 0 SNP none {haw25061} 1397 CB6880_redo II 5006737 1 A G 40 1.00 63 62 6 11 17 @,,,.,GggGgggGGGG. point 0 silent AAA->AAG[Lys->Lys] {F59A6.4} 7050 CB6880_redo II 5028912 0 X X -1000 -999.99 -1000 -1000 3 0 3 @..,GgG indel 0 nongenic -1056 downstream {F59A6.1} 1399 CB6880_redo II 5078770 1 C G 44 1.00 63 4 0 6 6 @GgGggg point 0 three_prime_UTR none {C27A2.6} 1400 CB6880_redo II 5078771 1 A C 36 1.00 63 4 0 5 5 @Ccccc point 0 three_prime_UTR none {C27A2.6} 1406 CB6880_redo II 5151336 1 G T 50 1.00 63 34 2 4 6 @TttT., point 0 nongenic -499 upstream {F58A6.6} 1407 CB6880_redo II 5185654 1 G C 255 1.00 63 62 0 33 33 @CcCCcCCcCCCccCCcCCCCCCCCcccCCcCcC point 0 missense,SNP CCT->CGT[Pro->Arg],none {C27D6.4c},{haw25156,uCE2-1607} 1408 CB6880_redo II 5195255 1 C T 255 1.00 63 62 0 24 24 @tTttTtTtttTTttTtTtTttTTt point 0 nongenic,nongenic -630 upstream,481 downstream {C34F11.5},{C34F11.6} 1409 CB6880_redo II 5203315 1 A G 55 1.00 63 62 2 4 6 @..GGGg point 0 five_prime_UTR none {C34F11.3a.1,C34F11.3a.2} 1410 CB6880_redo II 5205715 1 C G 51 1.00 63 62 2 4 6 @.,gGGG point 0 nongenic,nongenic,nongenic,nongenic 2231 into,2384 into,2413 into,2421 into {C34F11.3c},{C34F11.3b},{C34F11.3a.2},{C34F11.3a.1} 1411 CB6880_redo II 5205716 1 G C 82 1.00 63 50 0 6 6 @NcCCCC point 0 nongenic,nongenic,nongenic,nongenic 2232 into,2385 into,2414 into,2422 into {C34F11.3c},{C34F11.3b},{C34F11.3a.2},{C34F11.3a.1} 1412 CB6880_redo II 5219642 1 A G 40 1.00 63 62 2 4 6 @GGGg,, point 0 five_prime_UTR none {C34F11.9b} 1413 CB6880_redo II 5222115 1 T C 19 1.00 63 10 1 3 4 @CCC, point 0 nongenic,nongenic,nongenic,nongenic -2232 upstream,-7943 upstream,3233 into,3238 into {C34F11.9b},{EGAP2.2},{C34F11.9c},{C34F11.9a} 1420 CB6880_redo II 5231227 1 T G 116 1.00 63 62 0 5 5 @ggggG point 0 nongenic,nongenic -174 upstream,747 downstream {EGAP2.1},{EGAP2.2} 1421 CB6880_redo II 5231250 1 A C 222 1.00 63 62 0 10 10 @ccccCCCCcc point 0 nongenic,nongenic -151 upstream,770 downstream {EGAP2.1},{EGAP2.2} 1435 CB6880_redo II 5322089 1 T A 230 1.00 63 62 0 18 18 @aAAAAAAAAAAaAAAAAA point 0 nongenic -890 upstream {F08B1.1a.3,F08B1.1c.1} 1436 CB6880_redo II 5341630 1 C T 255 1.00 63 62 0 37 37 @tTTTTttttTtttttTttTtTtttTttTttTttTTTt point 0 nongenic,nongenic 838 downstream,855 downstream {F08B1.1a.1},{F08B1.1a.2} 1439 CB6880_redo II 5571578 1 G C 255 1.00 63 62 0 38 38 @CCcCCCCCCccCcCCcCCcccCCCccCCCCccCccCcc point 0 missense,three_prime_UTR GAC->CAC[Asp->His],none {C17C3.15},{C17C3.1c} 1440 CB6880_redo II 5635095 1 C G 255 1.00 63 62 0 29 29 @gGgGgGGggGGGggGgGGgggggGGggGg point 0 missense,SNP GAA->CAA[Glu->Gln],none {F59E12.8},{haw25459} 1441 CB6880_redo II 5647429 1 C T 255 1.00 63 62 0 31 31 @TTtTtttTTTTtTTTtttTtTTttTTtTtTT point 0 silent,SNP AAG->AAA[Lys->Lys],none {F59E12.10},{haw25466} 1443 CB6880_redo II 5661841 1 C G 42 1.00 63 48 0 4 4 @ggaA point 0 nongenic,nongenic,nongenic,nongenic -3539 upstream,319 downstream,681 into,703 into {C25H3.15},{C25H3.6c},{C25H3.6b},{C25H3.6a} 1444 CB6880_redo II 5707678 1 A C 29 1.00 63 18 2 3 5 @CCc,. point 0 five_prime_UTR none {C18A3.4a,C18A3.4b.2,C18A3.4c} 1445 CB6880_redo II 5707679 1 T A 19 1.00 63 28 3 3 6 @AAa,., point 0 five_prime_UTR none {C18A3.4a,C18A3.4b.2,C18A3.4c} 1451 CB6880_redo II 5723522 1 G T 146 1.00 63 62 0 8 8 @TtTTTTTT point 0 nongenic,nongenic 1178 into,1791 into {C18A3.6b.1},{C18A3.6a,C18A3.6b.2} 1452 CB6880_redo II 5775940 1 C T 13 1.00 63 62 3 6 9 @tttTTT.., point 0 nongenic -6975 upstream {K05F1.6a} 1454 CB6880_redo II 5779229 1 C T 24 1.62 63 0 2 3 5 @AG..T point 0 nongenic -3686 upstream {K05F1.6a} 7065 CB6880_redo II 5820840 0 X X -1000 -999.99 -1000 -1000 5 -1 4 @,.,,,gGg indel 1 five_prime_UTR none {ZK1248.3a,ZK1248.3b} 1457 CB6880_redo II 5820841 1 G C 12 1.00 63 62 0 7 7 @TTTcCcc point 0 five_prime_UTR none {ZK1248.3a,ZK1248.3b} 1466 CB6880_redo II 5938980 1 A C 18 1.00 63 28 1 3 4 @,cCC point 0 five_prime_UTR,missense none,TTA->TTC[Leu->Phe] {F28B12.2e.1,F28B12.2e.2,F28B12.2e.3},{F28B12.2a,F28B12.2b,F28B12.2c,F28B12.2d,F28B12.2f.1,F28B12.2f.2} 1467 CB6880_redo II 5960458 1 C T 255 1.00 63 62 0 14 14 @TTttTtTttTtttt point 0 SNP none {haw25654} 1469 CB6880_redo II 5983703 1 T A 39 1.00 63 62 3 6 9 @.,.AaAaAa point 0 nongenic,nongenic -4795 upstream,-8774 upstream {ZK75.2},{B0034.5} 1470 CB6880_redo II 5983705 1 C T 112 1.00 63 38 3 8 11 @.,.TtTtTtTT point 0 nongenic,nongenic -4793 upstream,-8776 upstream {ZK75.2},{B0034.5} 7071 CB6880_redo II 5990758 0 X X -1000 -999.99 -1000 -1000 3 0 3 @.,.cC indel 0 nongenic,nongenic -48 upstream,-5599 upstream {ZK75.3},{ZK75.1} 1472 CB6880_redo II 6001087 1 C T 255 1.00 63 62 0 33 33 @TTttTTtTttTtTtTTTTttTTttTTttTttTt point 0 nongenic 241 downstream {ZK84.6} 7073 CB6880_redo II 6057201 0 X X -1000 -999.99 -1000 -1000 5 -4 1 @t,,,..t indel 0 nongenic,nongenic,nongenic -853 upstream,154 downstream,514 downstream {R12C12.7},{R12C12.8a},{R12C12.8b} 1476 CB6880_redo II 6070027 1 T A 3 4.44 0 22 14 18 32 @,a.,a,aAAAA.,,aaAa,.AaaaaA,A,,,. point 0 nongenic -2929 upstream {H12I13.2} 1482 CB6880_redo II 6153811 1 C T 255 1.00 63 62 0 35 35 @TTTTTTTtTTttTTttTTtttTTTTttTTttTTtT point 0 silent ATC->ATT[Ile->Ile] {F57F10.1a,F57F10.1b,F57F10.1c} 1491 CB6880_redo II 6206072 1 C A 67 1.00 63 34 0 6 6 @aaaagg point 0 nongenic 2070 into {C30B5.5} 1494 CB6880_redo II 6242846 1 C T 255 1.00 63 62 0 39 39 @TttTtTTtttttttTtttTtTTtttttTtttttTTtttT point 0 nongenic,nongenic,nongenic -2860 upstream,-6614 upstream,1341 into {T24H7.4},{T24H7.5c.1},{T24H7.5a,T24H7.5b} 1497 CB6880_redo II 6451387 1 A T 255 1.00 63 62 0 23 23 @ttTTTtttTTTTTTTtTTTTTtt point 0 SNP none {haw25895} 1503 CB6880_redo II 6505423 1 A T 27 1.25 31 4 0 4 4 @cTTT point 0 nongenic 896 downstream {R05G9.1} 1505 CB6880_redo II 6527423 1 G A 255 1.00 63 62 0 32 32 @aAaAAAAaaAAaAAAaaAAAAAAAAaAAaaaa point 0 silent,SNP ATC->ATT[Ile->Ile],none {C56E6.4},{haw25905} 1506 CB6880_redo II 6527424 1 A T 255 1.00 63 62 0 32 32 @tTtTTTTttTTtTTTttTTTTTTTTtTTtttt point 0 missense,SNP ATC->AAC[Ile->Asn],none {C56E6.4},{haw25906} 7079 CB6880_redo II 6533054 0 X X -1000 -999.99 -1000 -1000 3 1 4 @...CcC indel 0 nongenic,nongenic -1493 upstream,-926 downstream {C56E6.5},{C56E6.1} 7081 CB6880_redo II 6539462 1 X X -1000 -999.99 -1000 -1000 7 -6 1 @,,,,,.. indel -1 SNP none {snp_C56E6[1]} 1507 CB6880_redo II 6559524 1 T C 31 1.00 63 62 2 4 6 @cccc,. point 0 three_prime_UTR none {F18C5.10.1} 1508 CB6880_redo II 6620907 1 C G 21 1.00 63 42 1 3 4 @gGg, point 0 nongenic,nongenic,nongenic,nongenic -11601 upstream,-1229 upstream,1193 into,964 into {C56C10.12},{F54H5.3},{F54H5.4b},{F54H5.4a} 1509 CB6880_redo II 6620908 1 G C 42 1.00 63 20 1 3 4 @cCc, point 0 nongenic,nongenic,nongenic,nongenic -11602 upstream,-1228 upstream,1192 into,963 into {C56C10.12},{F54H5.3},{F54H5.4b},{F54H5.4a} 1510 CB6880_redo II 6630609 1 T C 20 1.00 63 62 36 41 77 @,CC..c.c,C.c.,C.cC,,,,,CC.C,,...,c.,cC.cc.cccC,,c,ccCCcC.cCCc,ccC,c..cccCC.,, point 0 nongenic,nongenic -492 upstream,-536 upstream {T19D12.4a},{T19D12.4b} 1511 CB6880_redo II 6640325 1 C G 5 1.00 63 60 3 3 6 @,GgG,, point 0 nongenic 2740 into {T19D12.6} 1513 CB6880_redo II 6657793 1 A G 131 1.00 63 30 0 6 6 @gGggGG point 0 nongenic,nongenic,nongenic -2427 upstream,-3461 upstream,1021 into {T19D12.3},{T19D12.9},{T19D12.10} 1514 CB6880_redo II 6657794 1 G A 135 1.00 63 62 0 8 8 @aAaaAANa point 0 nongenic,nongenic,nongenic -2426 upstream,-3462 upstream,1020 into {T19D12.3},{T19D12.9},{T19D12.10} 1515 CB6880_redo II 6669138 1 G C 20 1.00 63 62 5 7 12 @ccccccc,,,,, point 0 silent TCG->TCC[Ser->Ser] {T19D12.1} 1516 CB6880_redo II 6671954 1 G A 255 1.62 63 62 0 46 46 @aAAAaAaaaAAaAAAaaAaAAAaAaAaaaAaAaaAAAaAAAaAAAa point 0 missense GGA->AGA[Gly->Arg] {T19D12.1} 1522 CB6880_redo II 6718362 1 C G 84 1.00 63 0 0 4 4 @GgGg point 0 nongenic,nongenic,nongenic -115 upstream,-141 upstream,656 downstream {T14B4.4a.1},{T14B4.4a.2,T14B4.4b.2},{T14B4.5} 1523 CB6880_redo II 6720674 1 T C 84 1.00 63 42 0 4 4 @CcCc point 0 nongenic,nongenic,nongenic 304 into,478 downstream,552 downstream {T14B4.8},{T14B4.4b.1},{T14B4.4a.1,T14B4.4a.2,T14B4.4b.2} 1526 CB6880_redo II 6721752 1 A G 7 7.75 63 6 2 2 4 @gg.. point 0 ncRNA none {T14B4.t1} 1529 CB6880_redo II 6724148 1 A C 78 1.00 63 42 1 4 5 @CCCC, point 0 nongenic -2584 upstream {T14B4.8} 1530 CB6880_redo II 6724150 1 C A 42 1.00 63 62 2 3 5 @AAA,. point 0 nongenic -2586 upstream {T14B4.8} 1531 CB6880_redo II 6727391 1 T G 88 1.00 63 62 1 4 5 @GGGg. point 0 SNP none {haw25948} 1535 CB6880_redo II 6734010 1 C T 104 1.00 63 62 0 4 4 @ttTt point 0 nongenic,nongenic -286 upstream,-836 upstream {T14B4.9},{T14B4.3} 1538 CB6880_redo II 6736304 1 C G 255 1.00 63 62 0 29 29 @GggGgggGggGggGGGGGgggGGGGGgGG point 0 missense,SNP TCC->TGC[Ser->Cys],none {T14B4.2},{haw25953} 1539 CB6880_redo II 6736306 1 T C 255 1.00 63 62 0 28 28 @cCcccCccCccCCCCCcccCCCCCcCCc point 0 missense,SNP TTC->CTC[Phe->Leu],none {T14B4.2},{haw25954} 1540 CB6880_redo II 6736474 1 A C 146 1.00 63 62 0 8 8 @CCCCcCCc point 0 missense AAC->CAC[Asn->His] {T14B4.2} 1541 CB6880_redo II 6736476 1 C A 195 1.00 63 62 0 12 12 @AAAAaAAaAaAa point 0 missense AAC->AAA[Asn->Lys] {T14B4.2} 1542 CB6880_redo II 6736477 1 A C 185 1.00 63 62 0 12 12 @CCCCcCCcCcCc point 0 missense AAG->CAG[Lys->Gln] {T14B4.2} 1548 CB6880_redo II 6745251 1 A C 255 1.00 63 62 0 22 22 @cCCCCCcCCCcCCccCccCCcc point 0 nongenic,nongenic -580 upstream,168 downstream {F41G3.17},{F41G3.16} 7092 CB6880_redo II 6749217 0 X X -1000 -999.99 -1000 -1000 5 0 5 @,....Tttt indel 0 inframe none {F41G3.10} 1549 CB6880_redo II 6750713 1 C G 46 1.00 63 62 1 3 4 @Ggg. point 0 missense GGA->GCA[Gly->Ala] {F41G3.20} 1550 CB6880_redo II 6755509 1 C A 5 1.00 63 62 2 3 5 @,.AAa point 0 nongenic,nongenic,nongenic -798 upstream,-906 upstream,317 into {F41G3.11},{F41G3.3},{F41G3.4} 1551 CB6880_redo II 6755908 1 A T 255 1.00 63 62 0 33 33 @ttTttTtTTttTtTTtTTTttTTTTTttTTTtt point 0 SNP none {haw25965} 1552 CB6880_redo II 6759798 1 A T 59 1.00 63 62 6 10 16 @,....,tttttttttt point 0 nongenic,nongenic,nongenic 568 into,824 downstream,936 downstream {F41G3.2},{F41G3.12},{F41G3.3} 1553 CB6880_redo II 6759908 1 C T 60 1.00 63 48 2 3 5 @TTt.. point 0 missense CCC->TCC[Pro->Ser] {F41G3.2} 7096 CB6880_redo II 6759911 4 X X -1000 -999.99 -1000 -1000 2 0 2 @,.ggg indel -4 frameshift none {F41G3.2} 1555 CB6880_redo II 6759916 1 C G 38 1.00 63 30 0 5 5 @ggggg point 0 silent ACC->ACG[Thr->Thr] {F41G3.2} 1556 CB6880_redo II 6759919 1 A G 64 1.00 63 36 0 7 7 @cggggGg point 0 silent GAA->GAG[Glu->Glu] {F41G3.2} 1557 CB6880_redo II 6759922 1 C T 122 1.00 63 62 0 7 7 @tttttTt point 0 silent ACC->ACT[Thr->Thr] {F41G3.2} 1558 CB6880_redo II 6762603 1 C T 255 1.00 63 62 0 29 29 @tttTttTttttttttTTTttTtTtTtTtt point 0 SNP none {haw25977} 1559 CB6880_redo II 6764076 1 C A 84 1.00 63 42 0 4 4 @AaAa point 0 nongenic,nongenic,nongenic -903 upstream,-941 upstream,3454 into {F41G3.1.1},{F41G3.1.2},{F41G3.12} 1563 CB6880_redo II 6766065 1 C T 255 1.00 63 62 0 16 16 @TTTTTtTTTTTTTtTt point 0 SNP none {haw25988} 1564 CB6880_redo II 6766211 1 C T 255 1.00 63 62 0 35 35 @TTtTtTTttTtTttTTTtttTttTTTTTTTTttTt point 0 SNP none {haw25989} 1565 CB6880_redo II 6808829 1 A G 255 1.00 63 62 0 25 25 @GgGGggGgGGgggggGggGgGgGgg point 0 SNP none {haw26048} 1566 CB6880_redo II 6878056 1 C T 255 1.00 63 62 0 14 14 @TtttTTtttTttTt point 0 SNP none {haw26160} 1567 CB6880_redo II 6896314 1 T A 255 1.00 63 62 0 44 44 @AAaaaaAAaaAaaaAaaAAAAAaAAaAAAAAaAAAaaAaaAAaA point 0 SNP none {haw26186} 1568 CB6880_redo II 6908985 1 C T 255 1.00 63 62 0 32 32 @TTTTttTttTtTtTTTTtttTTttTttttttT point 0 SNP none {haw26205} 1571 CB6880_redo II 6944910 1 G A 93 1.00 63 62 2 5 7 @AAaAa,. point 0 nongenic,nongenic,nongenic,nongenic -6103 upstream,1975 into,2914 into,669 into {F22D3.5},{F22D3.2b},{F22D3.2a},{F22D3.2c} 1572 CB6880_redo II 6955856 1 G A 255 1.00 63 62 0 51 51 @aaaAAAAAAaAAaaAAAaaAaAaaaaAAAAaAaAAaaaaAaaAAAAAaaAa point 0 missense GCT->GTT[Ala->Val] {C15F1.3a.1,C15F1.3a.2} 1573 CB6880_redo II 6999734 1 C A 250 1.00 63 62 0 18 18 @AAAAaaAAAAAAAAAAAA point 0 SNP none {haw26262} 1575 CB6880_redo II 7003347 1 T A 255 1.00 63 62 0 23 23 @AAaaaAaAAAAaAAaaAaAAAaa point 0 missense GTA->GAA[Val->Glu] {C52E12.2a,C52E12.2b} 1576 CB6880_redo II 7028429 1 T A 29 1.00 63 0 0 4 4 @Aaaa point 0 nongenic,nongenic,nongenic -9803 upstream,1395 into,1663 into {ZK1127.7},{C52E12.1.2},{C52E12.1.1} 1584 CB6880_redo II 7123163 1 T C 196 1.75 63 62 0 19 19 @ccccccccccccccccccc point 0 nongenic,nongenic,nongenic -1432 upstream,-1441 upstream,983 into {F10E7.3},{F10E7.11},{F10E7.2} 7101 CB6880_redo II 7123983 0 X X -1000 -999.99 -1000 -1000 5 -4 1 @,,.,,tt indel 3 inframe none {F10E7.2} 1585 CB6880_redo II 7123985 1 A C 6 1.81 63 26 2 3 5 @,,ccC point 0 missense TAC->TCC[Tyr->Ser] {F10E7.2} 1586 CB6880_redo II 7123986 1 C G 53 1.75 63 6 0 4 4 @ggGG point 0 premature_stop TAC->TAG[Tyr->stop] {F10E7.2} 1588 CB6880_redo II 7343871 1 C G 39 1.00 63 8 2 2 4 @GG.. point 0 nongenic,nongenic,nongenic,nongenic,nongenic -13730 upstream,-2576 upstream,4669 into,4696 into,4703 into {F21D12.5},{F21D12.1c.1},{F21D12.1a},{F21D12.1d},{F21D12.1c.2,F21D12.1e} 1596 CB6880_redo II 7403160 1 C A 31 1.00 63 12 0 4 4 @aaaa point 0 nongenic,nongenic -514 upstream,-5270 upstream {C07D10.4},{K02A2.2} 1600 CB6880_redo II 7444113 1 T A 52 1.31 63 4 3 6 9 @.,,aaaaaa point 0 nongenic -2496 upstream {Y9D1A.1} 1601 CB6880_redo II 7444114 1 A C 66 1.31 63 4 3 7 10 @.,,ccccccC point 0 nongenic -2495 upstream {Y9D1A.1} 1605 CB6880_redo II 7489253 1 T A 29 1.00 63 62 12 14 26 @,.A.A.aaAA,,A,A.Aaa,.aaa,. point 0 nongenic -38 upstream {D1022.9} 1606 CB6880_redo II 7506632 1 A G 170 1.00 63 20 0 6 6 @ggGGGg point 0 nongenic,nongenic 101 downstream,657 downstream {C28F5.1},{C28F5.2} 1609 CB6880_redo II 7574969 1 G A 62 1.00 63 62 13 18 31 @,,A,a,A,A,..aAaaaA,.aAAA,aAAA,. point 0 nongenic,nongenic -891 upstream,588 into {F35D2.1},{F35D2.2} 1610 CB6880_redo II 7618212 1 G A 81 1.00 63 62 0 11 11 @AaaaAAAAaaa point 0 SNP,three_prime_UTR none,none {haw26758},{R07G3.8} 1611 CB6880_redo II 7618213 1 T G 78 1.00 63 62 0 8 8 @gGGGGggg point 0 three_prime_UTR none {R07G3.8} 1612 CB6880_redo II 7618214 1 G T 83 1.00 63 62 0 10 10 @tTTTTtttTT point 0 three_prime_UTR none {R07G3.8} 1613 CB6880_redo II 7622417 1 G A 19 1.00 63 62 13 14 27 @,aaa..aaAAA,..aA.A..AaA,.,. point 0 nongenic -1971 upstream {R07G3.8} 7116 CB6880_redo II 7625205 0 X X -1000 -999.99 -1000 -1000 5 -4 1 @,.,.Ttt. indel 1 nongenic -4759 upstream {R07G3.8} 1614 CB6880_redo II 7634326 1 T G 40 1.00 63 40 2 3 5 @,,ggG point 0 nongenic,nongenic,nongenic -163 upstream,6332 into,7144 into {R153.1a},{R153.1b,R153.1c,R153.1d,R153.1e},{R153.1g} 1616 CB6880_redo II 7642038 1 C G 54 1.00 63 44 0 4 4 @GGGg point 0 five_prime_UTR none {R153.1d,R153.1f} 1619 CB6880_redo II 7642132 1 T G 45 1.00 63 48 1 4 5 @.gGGg point 0 nongenic,nongenic,nongenic,nongenic,nongenic,nongenic -38 upstream,-41 upstream,7755 into,7785 into,9034 into,950 into {R153.1f},{R153.1d},{R153.1b},{R153.1e},{R153.1g},{R153.1c} 1620 CB6880_redo II 7676553 1 A G 90 1.00 63 62 5 8 13 @GGgGgggG,,,,, point 0 nongenic,nongenic,nongenic -5337 upstream,4617 into,4619 into {F18A1.2.2},{F18A1.3a.2,F18A1.3b,F18A1.3c,F18A1.3d,F18A1.3e},{F18A1.3a.1} 1621 CB6880_redo II 7696463 1 T A 63 1.00 63 34 1 3 4 @,Aaa point 0 nongenic,nongenic,nongenic -2579 upstream,529 into,594 into {B0495.4},{B0495.5.2},{B0495.5.1} 1622 CB6880_redo II 7697395 1 A C 197 1.00 63 62 0 18 18 @ccCccCccCcCccCcccc point 0 missense TCC->GCC[Ser->Ala] {B0495.5.1,B0495.5.2} 1623 CB6880_redo II 7697396 1 T A 191 1.00 63 62 0 17 17 @AaaAaaAaAaaAaaaaa point 0 silent GGA->GGT[Gly->Gly] {B0495.5.1,B0495.5.2} 1624 CB6880_redo II 7697397 1 C T 187 1.00 63 62 0 18 18 @TttTttTtTttTtttttT point 0 missense GGA->GAA[Gly->Glu] {B0495.5.1,B0495.5.2} 1625 CB6880_redo II 7698554 1 A T 83 1.00 63 62 0 7 7 @TttttTT point 0 SNP none {haw26816} 1626 CB6880_redo II 7698555 1 C A 77 1.00 63 62 0 6 6 @aaaAAa point 0 SNP none {haw26817} 1627 CB6880_redo II 7698556 1 T C 77 1.00 63 62 0 6 6 @cccCCc point 0 nongenic,nongenic,nongenic,nongenic -124 upstream,-136 upstream,-621 upstream,43 downstream {B0495.5.1},{B0495.5.2},{B0495.2},{B0495.6} 1629 CB6880_redo II 7739393 1 C T 137 1.00 63 58 0 7 7 @TTtTTTt point 0 missense CCA->TCA[Pro->Ser] {B0228.4b} 163726 CB6880_redo II 7743768 97 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered,uncovered non-exonic, 1446 to 1543 bp into,non-exonic, 18941 to 19038 bp into {B0228.4e},{B0228.4a,B0228.4c} 1635 CB6880_redo II 7745769 1 C T 73 1.00 63 4 0 4 4 @tTTT point 0 nongenic,nongenic,nongenic 3448 into,6589 into,6876 into {B0228.4e},{B0228.4a},{B0228.4c} 1638 CB6880_redo II 7806593 1 A G 38 1.00 63 62 9 11 20 @ggGGggG.g.g.Gg,.,,.. point 0 nongenic,nongenic -12343 upstream,-4577 upstream {C06A8.9},{T05A6.1} 1641 CB6880_redo II 7858727 1 G A 57 1.00 63 62 11 14 25 @AaaAA.a.a,.,a,A..aAaA.A.. point 0 silent TTG->TTA[Leu->Leu] {T09A5.9.1,T09A5.9.2} 7127 CB6880_redo II 7866905 0 X X -1000 -999.99 -1000 -1000 4 1 5 @,...aaa indel 0 inframe none {T09A5.12.1,T09A5.12.2} 1643 CB6880_redo II 7877588 1 G A 3 1.00 63 62 26 26 52 @,.AA.a.,,.A,aAA.Aa.a,Aa.a,Aaaa.aAAA.A,,..A,aa,,a,,.. point 0 nongenic,nongenic,nongenic,nongenic -3762 upstream,337 into,430 downstream,754 downstream {T01H3.3.1},{T01H3.2},{T01H3.1.1},{T01H3.1.2} 1644 CB6880_redo II 7883746 1 C G 86 1.81 34 62 0 6 6 @GGGGGG point 0 nongenic -9413 upstream {ZK675.1.1,ZK675.1.2} 1645 CB6880_redo II 7913323 1 C A 255 1.00 63 62 0 26 26 @aaaaaaAAAAAaaaaAaAAaaaaaaa point 0 SNP none {haw26997} 1646 CB6880_redo II 7960769 1 C G 255 1.00 63 62 0 32 32 @gGggggggGGGGGGggGGGGgGggggggggGg point 0 SNP none {haw27047} 1647 CB6880_redo II 8033054 1 T G 7 1.00 63 62 3 4 7 @.,.ggGg point 0 nongenic -414 upstream {C08B11.4} 1649 CB6880_redo II 8120665 1 G A 41 1.00 63 62 15 20 35 @aaa.a.A,.a,..aAa..AAa.aaaa,a.a.aA,. point 0 missense CGG->CAG[Arg->Gln] {C41C4.5a.1,C41C4.5a.2,C41C4.5b} 1650 CB6880_redo II 8142090 1 G A 58 1.00 63 62 23 35 58 @aa.aAAa,A.a.AaAAa,Aa.A....A.AaA,,aAaaa.,a.a,a,,AA.a.a.a,aA point 0 missense CCT->TCT[Pro->Ser] {F10B5.8} 1652 CB6880_redo II 8210525 1 T A 5 1.00 63 34 2 2 4 @aA,, point 0 nongenic,nongenic -2244 upstream,68 downstream {M110.8},{M110.2} 1653 CB6880_redo II 8227927 1 G C 255 1.00 63 62 0 50 50 @CcCcccCCCccCccCccCcCcCCcCccCcCcccccCCcCCcCccCcCccc point 0 missense CGC->CCC[Arg->Pro] {M110.5a.1,M110.5a.2,M110.5b,M110.5c,M110.5d} 1654 CB6880_redo II 8227928 1 C G 255 1.00 63 62 0 49 49 @GgggGGGggGggGggGgGgGGgGggGgGgggggGGgGGgGggGgGgggg point 0 silent CGC->CGG[Arg->Arg] {M110.5a.1,M110.5a.2,M110.5b,M110.5c,M110.5d} 1655 CB6880_redo II 8262636 1 A G 51 6.12 63 62 8 14 22 @G.G...G..ggGgGGgg.GG.G point 0 nongenic,nongenic -1956 upstream,-3573 upstream {K01C8.1.1},{F35C11.6} 7130 CB6880_redo II 8360602 1 X X -1000 -999.99 -1000 -1000 4 0 4 @,G.G.. indel -1 nongenic,nongenic -1291 upstream,-423 upstream {M195.1},{M195.2} 1661 CB6880_redo II 8552139 1 C T 30 1.00 63 62 8 9 17 @Ttt,tt.,T,.t.T.T. point 0 nongenic -3579 upstream {W01C9.5} 1662 CB6880_redo II 8584093 1 C T 255 1.00 63 62 0 27 27 @ttttTtTTTTttTTtttttTtTTtttt point 0 missense,SNP GGA->GAA[Gly->Glu],none {F54C9.11},{haw27317} 1663 CB6880_redo II 8715377 1 C T 255 1.00 63 62 0 28 28 @tttttTttttTtTtttttTtttTTtTTt point 0 SNP none {haw27384} 1666 CB6880_redo II 8748249 1 G C 8 1.00 63 62 3 3 6 @C,,,Cc point 0 SNP none {snp_K08F8[1]} 1668 CB6880_redo II 8786946 1 C T 13 1.00 63 62 24 26 50 @t.ttT,t.Tt,.,.tt,,t.t.t.tt.TTT..tTtT.t,T..Tt,,.t.. point 0 nongenic,nongenic -3379 upstream,-3538 upstream {F07H5.2},{F07H5.13} 1671 CB6880_redo II 8802488 1 T G 255 1.00 63 62 0 59 59 @GGgGGGGggGgGggGgGgGgggGGgggGGGgGgggggGgGGggGggGGGgggGgggGgg point 0 silent,SNP TCT->TCG[Ser->Ser],none {F07H5.8},{haw27428} 1674 CB6880_redo II 8894955 1 C T 255 1.00 63 62 0 25 25 @tttTtTTtttTTttTttTttTtttT point 0 SNP none {haw27502} 7137 CB6880_redo II 8896592 1 X X -1000 -999.99 -1000 -1000 3 -1 2 @,., indel -1 SNP none {uCE2-1805} 1675 CB6880_redo II 8897466 1 G A 27 1.00 63 62 16 20 36 @.AAAaa,AAa.AA,.a.AaAa.,.,,,A.Aa...AA point 0 nongenic,nongenic 667 into,705 into {B0457.1c},{B0457.1a,B0457.1b} 1676 CB6880_redo II 8903260 1 T C 31 1.00 63 14 5 8 13 @CcCCcCCc,..,, point 0 nongenic,nongenic 1781 into,5298 into {B0457.1c},{B0457.1a,B0457.1b} 1677 CB6880_redo II 8903261 1 G T 14 1.00 63 30 6 8 14 @TtTTtTTt,..,,, point 0 nongenic,nongenic 1780 into,5297 into {B0457.1c},{B0457.1a,B0457.1b} 1678 CB6880_redo II 8907371 1 C T 197 1.00 63 62 0 9 9 @tTTTtTTTt point 0 SNP none {haw27506} 1683 CB6880_redo II 8916760 1 C T 120 1.00 63 62 0 5 5 @ttTtt point 0 nongenic,nongenic -4809 upstream,-5611 upstream {B0457.4},{B0457.6} 1684 CB6880_redo II 8953211 1 G A 141 1.00 63 62 6 15 21 @AaA,,a,Aaaa.AAAAAA.,a point 0 nongenic -5601 upstream {T21B10.6} 1687 CB6880_redo II 9090949 1 A G 42 1.00 63 62 1 3 4 @,gGG point 0 nongenic 175 downstream {C07H4.1} 1689 CB6880_redo II 9092377 1 C T 255 1.00 63 62 0 18 18 @ttTTTTTtTTttttttTt point 0 SNP none {haw27664} 7142 CB6880_redo II 9234923 0 X X -1000 -999.99 -1000 -1000 3 0 3 @.,.tTt indel 0 inframe none {T26C5.2} 1692 CB6880_redo II 9322175 1 T C 139 1.00 63 62 4 12 16 @ccCCcccCCCcC,.,. point 0 nongenic,nongenic,nongenic -1708 upstream,184 into,372 downstream {D2013.10},{D2013.1},{D2013.2} 1693 CB6880_redo II 9322176 1 C A 128 1.00 63 62 4 10 14 @AAaaaAAAaA,.,. point 0 nongenic,nongenic,nongenic -1707 upstream,185 into,373 downstream {D2013.10},{D2013.1},{D2013.2} 1694 CB6880_redo II 9331348 1 C T 223 1.00 63 62 0 15 15 @ttttTtttttttttt point 0 SNP none {haw27818} 1698 CB6880_redo II 9419089 1 A G 23 1.00 63 62 4 5 9 @....GGggg point 0 nongenic,nongenic,nongenic -1313 upstream,852 downstream,884 downstream {M176.4},{M176.3.1},{M176.3.2} 1699 CB6880_redo II 9419090 1 G C 83 1.00 63 22 2 6 8 @..CCcccc point 0 nongenic,nongenic,nongenic -1312 upstream,853 downstream,885 downstream {M176.4},{M176.3.1},{M176.3.2} 1700 CB6880_redo II 9427750 1 T C 105 1.00 63 38 2 9 11 @cCCCCcGCC,. point 0 nongenic -91 upstream {M176.5} 1701 CB6880_redo II 9428872 1 G A 255 1.00 63 62 0 24 24 @aAaAaAAaaaAaaAaaaAAAAaaa point 0 SNP none {haw27856} 1702 CB6880_redo II 9436563 1 C T 255 1.00 63 62 0 31 31 @TttTttTttTtTTTtttTTTttTtTTTtTtt point 0 SNP none {haw27860} 1703 CB6880_redo II 9493721 1 C T 49 1.00 63 46 3 6 9 @.,,tTTTTt point 0 nongenic -5539 upstream {T19H5.4a} 1704 CB6880_redo II 9547900 1 T G 87 0.00 63 22 0 6 6 @gggggg point 0 nongenic 631 downstream {AH6.10} 1705 CB6880_redo II 9547901 1 G T 22 1.00 63 62 2 6 8 @tttttt,. point 0 nongenic 630 downstream {AH6.10} 1707 CB6880_redo II 9628822 1 G A 68 1.00 63 62 11 18 29 @aAAA.A,,Aa..AAA.aA,.aaAa,,,aa point 0 nongenic -7728 upstream {ZK1307.7} 1717 CB6880_redo II 9779967 1 G A 134 1.00 63 62 11 22 33 @.,,,.Aa.aA,AaAaaAAA.,AaA.a.aAaAAA point 0 missense TCA->TTA[Ser->Leu] {T10B9.8} 1722 CB6880_redo II 9923599 1 G A 47 2.94 63 50 16 23 39 @a,a,a,aaA,A,aA,aaa.a.,,aa.aa.A.a,,A,AAa point 0 nongenic,nongenic,nongenic -3107 upstream,-8168 upstream,1429 into {C05C10.1},{C05C10.4.1},{C05C10.2a,C05C10.2b} 1728 CB6880_redo II 10019098 1 A C 203 3.12 63 62 0 14 14 @cCCcCccccCcCcC point 0 nongenic -3114 upstream {F52H3.7a} 1737 CB6880_redo II 10340121 1 T G 255 1.00 63 62 0 26 26 @gGGggGGggGgGggGGGGggggggGg point 0 missense CAT->CCT[His->Pro] {C07E3.2.1,C07E3.2.2} 1740 CB6880_redo II 10353430 1 G A 123 1.00 63 62 12 25 37 @AAAAa.AAAaa.aAA,..,aaaAa,aaA..aaAA.,, point 0 nongenic,nongenic 231 downstream,44 downstream {C07E3.3},{C07E3.8} 1741 CB6880_redo II 10419713 1 G A 113 1.00 63 62 5 14 19 @AAAa.A.A.,A.aaaaAaA point 0 nongenic,nongenic,nongenic,nongenic -16352 upstream,549 downstream,553 downstream,562 into {E04D5.3},{E04D5.1b},{E04D5.1a.1},{E04D5.2} 1742 CB6880_redo II 10424839 1 G A 82 1.00 63 62 8 15 23 @A.aA.,,aA.,AaaAaA,a,Aaa point 0 nongenic,nongenic -11226 upstream,-2890 upstream {E04D5.3},{E04D5.2} 1743 CB6880_redo II 10427277 1 C T 16 1.00 63 62 4 4 8 @,..,tTTt point 0 nongenic,nongenic -5328 upstream,-8788 upstream {E04D5.2},{E04D5.3} 7151 CB6880_redo II 10430280 1 X X -1000 -999.99 -1000 -1000 5 -2 3 @,,... indel -1 SNP none {uCE2-1895} 7152 CB6880_redo II 10432291 0 X X -1000 -999.99 -1000 -1000 5 -2 3 @.....ccc indel 0 nongenic,nongenic -10342 upstream,-3775 upstream {E04D5.2},{E04D5.3} 1744 CB6880_redo II 10436909 1 A C 255 1.00 63 62 0 22 22 @CccccccCCccCCccCcCccgC point 0 SNP none {haw28333,snp_E04D5[5]} 1745 CB6880_redo II 10437067 1 G A 255 1.00 63 62 0 21 21 @AaAAaAaAaAAaaAaAAAAaA point 0 SNP none {haw28334} 1747 CB6880_redo II 10473915 1 A G 255 1.00 63 62 0 29 29 @GgggGGggGGggggggggggGggggGGGg point 0 SNP none {haw28363} 1748 CB6880_redo II 10599661 1 A T 83 1.00 63 24 0 4 4 @tTtt point 0 nongenic,nongenic,nongenic,nongenic -1665 upstream,402 into,409 into,860 downstream {C14A4.8},{C14A4.9.2},{C14A4.9.1},{C14A4.15} 1749 CB6880_redo II 10722144 1 C T 85 1.00 63 62 14 18 32 @tttTTtttt,Ttt,....Tt..TTt.....t. point 0 silent TAC->TAT[Tyr->Tyr] {C09G5.8a,C09G5.8b} 1750 CB6880_redo II 10724355 1 C T 255 1.00 63 62 0 25 25 @TtTTTTtttTTtTtttttTtTtttt point 0 SNP none {haw28599} 1751 CB6880_redo II 10750100 1 G A 58 1.00 63 62 9 13 22 @.aA.A,aaA.a.aAAA.,,,aa point 0 nongenic,nongenic 10903 into,11192 into {C52A11.4a,C52A11.4c,C52A11.4d,C52A11.4e,C52A11.4f},{C52A11.4g} 1757 CB6880_redo II 10779219 1 G T 198 1.00 63 62 0 16 16 @tttttttttttttttT point 0 nongenic,nongenic,nongenic,nongenic -4234 upstream,-6153 upstream,355 into,898 into {C52A11.4d},{R06F6.1.1},{T19E10.1a},{T19E10.1b} 1758 CB6880_redo II 10779220 1 G A 200 1.00 63 62 0 16 16 @aaaaaaaaaaaaaaaA point 0 nongenic,nongenic,nongenic,nongenic -4235 upstream,-6152 upstream,356 into,899 into {C52A11.4d},{R06F6.1.1},{T19E10.1a},{T19E10.1b} 1760 CB6880_redo II 10827063 1 C T 255 1.00 63 62 0 26 26 @TTTTTttTttTTtttTTtttTTtTTT point 0 SNP none {haw28664,snp_VM106R[1]} 1761 CB6880_redo II 10828430 1 C T 255 1.00 63 62 0 23 23 @tTttTTTTttttttttTTtTttt point 0 SNP none {haw28666} 1762 CB6880_redo II 10828577 1 G A 255 1.00 63 62 0 27 27 @aaaaAAAAaAAAAAaAAAAAaAAAAaa point 0 SNP none {haw28667} 1763 CB6880_redo II 10829219 1 G A 255 1.00 63 62 0 30 30 @aaAAaaaAaAaaAaAAaAaaaAaaAaaaaA point 0 SNP none {haw28668} 1766 CB6880_redo II 10928381 1 G A 56 1.00 63 62 16 22 38 @AA,,a..,aaa,aA,AA.AA,,.AaaaaAA,.aAa.,, point 0 missense TGC->TAC[Cys->Tyr] {R03D7.1} 1767 CB6880_redo II 10949462 1 C T 52 1.00 63 62 22 30 52 @T,,T,TTt.Ttt..,.ttTt,,,.t.TTtt,,tT,TtT,.tTt,,tTT,t.T point 0 nongenic,nongenic -809 upstream,355 downstream {R03D7.6},{R03D7.5} 1769 CB6880_redo II 11092046 1 T C 255 1.00 63 62 0 20 20 @CCccCcCCCCcCcccccccc point 0 nongenic,nongenic -2665 upstream,-626 upstream {F45E10.1a,F45E10.1b,F45E10.1c,F45E10.1d},{C09H10.1} 1773 CB6880_redo II 11181038 1 T G 138 1.00 63 62 0 8 8 @GgGggGgg point 0 SNP none {snp_F37H8[3]} 7158 CB6880_redo II 11194996 1 X X -1000 -999.99 -1000 -1000 4 -1 3 @.... indel -1 SNP none {uCE2-1963} 1774 CB6880_redo II 11194997 1 A C 4 1.00 63 2 2 2 4 @cc.. point 0 SNP none {uCE2-1963} 1775 CB6880_redo II 11194998 1 C A 3 1.00 63 4 2 2 4 @aa.. point 0 nongenic -8741 upstream {T06D8.1a,T06D8.1b} 7160 CB6880_redo II 11196929 0 X X -1000 -999.99 -1000 -1000 5 -2 3 @,....gg indel 0 nongenic -6811 upstream {T06D8.1a,T06D8.1b} 1797 CB6880_redo II 11233034 1 A G 77 1.00 63 62 10 18 28 @GGG.ggg.g,g,,.G.G,gGG.ggg.gg point 0 nongenic,nongenic,nongenic 210 into,281 downstream,354 into {T06D8.5.2,T06D8.5.3},{T06D8.2},{T06D8.5.1} 1799 CB6880_redo II 11393912 1 G C 15 1.00 63 28 2 6 8 @cCCCCC,, point 0 nongenic,nongenic -16202 upstream,-3133 upstream {C05D12.7},{C33B4.3a,C33B4.3b,C33B4.3c} 1801 CB6880_redo II 11582452 1 C T 28 1.00 63 62 11 13 24 @,t..t.,.,TTTtTt.t,tt,,Tt point 0 three_prime_UTR none {F54D5.14} 1804 CB6880_redo II 11591620 1 A G 7 1.00 63 4 0 4 4 @gggt point 0 nongenic,nongenic,nongenic 322 into,685 downstream,753 downstream {F07A11.1},{F07A11.2b.1},{F07A11.2b.2} 1816 CB6880_redo II 11700377 1 G A 160 1.00 63 62 7 16 23 @AA,AA,a.Aa,,aa,aAaA,aaa point 0 nongenic,nongenic,nongenic,nongenic -153 upstream,-160 upstream,-5529 upstream,4291 into {VF13D12L.1.1},{VF13D12L.1.2},{VF13D12L.3},{C47D12.8} 7165 CB6880_redo II 11717737 1 X X -1000 -999.99 -1000 -1000 8 -7 1 @,,.,,,,, indel -1 SNP none {uCE2-2035} 1817 CB6880_redo II 11717738 1 T G 54 1.00 63 16 2 4 6 @gGGG,, point 0 SNP none {uCE2-2035} 1818 CB6880_redo II 11719744 1 T G 56 1.00 63 18 2 3 5 @.,ggG point 0 nongenic -678 upstream {F13D12.3} 1823 CB6880_redo II 11774824 1 G A 81 1.00 63 62 15 24 39 @,,,aaa,AAaa,aA.A,..AAa.aaAAA.a,Aa,AA,,a point 0 three_prime_UTR none {F43G6.9.1} 1824 CB6880_redo II 11794523 1 A C 255 1.00 63 62 0 35 35 @CcCCccCcCcccCcCccCcCCccCccCCcCcCCCc point 0 nongenic,nongenic -4429 upstream,2641 into {F43G6.11a,F43G6.11b},{F43G6.4} 1825 CB6880_redo II 11833892 1 G A 75 1.00 63 62 10 15 25 @a,aA.,,.aAaaaaaa,A,A,a..A point 0 nongenic,nongenic -1400 upstream,-8640 upstream {T27D12.3},{T27D12.1.1} 1839 CB6880_redo II 12002727 1 G A 10 1.00 63 62 4 8 12 @C,a,ta,A.AaA point 0 nongenic,nongenic,nongenic -9071 upstream,1291 into,1303 into {Y17G7B.24},{Y17G7B.5a},{Y17G7B.5b} 1840 CB6880_redo II 12010527 1 G A 101 1.00 63 62 17 31 48 @A,,,AAA,a.AAAAaA,A.aAA,aAaa...a.AaAAaAAA..,AcA,. point 0 nongenic,nongenic -1271 upstream,-3986 upstream {Y17G7B.24},{Y17G7B.5a,Y17G7B.5b} 1841 CB6880_redo II 12061195 1 C T 20 1.00 63 62 15 17 32 @.TT,tt,Tt..t.T..,t..TttT.T,Tt.,t point 0 nongenic,nongenic -3686 upstream,956 into {Y17G7B.14},{Y17G7B.11} 1842 CB6880_redo II 12067756 1 C T 39 1.00 63 62 16 20 36 @....t,TT.tt..TTttt,T.tTt.tTtTtT,,.,, point 0 nongenic,nongenic -257 upstream,272 downstream {Y17G7B.22},{Y17G7B.14} 1846 CB6880_redo II 12115353 1 C T 255 1.00 63 62 0 16 16 @TTTTtttttTTTTTtT point 0 SNP none {haw30080} 1847 CB6880_redo II 12170815 1 G A 255 1.00 63 62 0 24 24 @aAaAaaAAaaaAAaAAaaAaAAAA point 0 SNP none {haw30197} 1849 CB6880_redo II 12174493 1 G A 255 1.00 63 62 0 19 19 @AAAaAaAAaaaaAAaaaAa point 0 SNP none {haw30201} 1850 CB6880_redo II 12178809 1 C T 255 1.00 63 62 0 19 19 @TtTttttTtTTTtTTTTTt point 0 SNP none {haw30206} 1851 CB6880_redo II 12189092 1 T A 235 1.00 63 62 0 14 14 @aaaAaaaaaaAaaa point 0 three_prime_UTR none {Y57A10A.14} 1852 CB6880_redo II 12192435 1 G A 16 1.00 63 62 7 9 16 @A....a,a.Aaaaaa. point 0 nongenic 2644 into {Y57A10A.15} 1853 CB6880_redo II 12193173 1 G A 255 1.00 63 62 0 23 23 @AaAaAAAAaAAaaaaaaaAAaAA point 0 nongenic 3382 into {Y57A10A.15} 1864 CB6880_redo II 12260333 1 C T 112 1.00 63 62 0 5 5 @TTTTT point 0 SNP none {haw30396} 1869 CB6880_redo II 12266285 1 G T 42 1.00 63 62 3 6 9 @,..ttTttt point 0 SNP none {haw30403} 1871 CB6880_redo II 12272901 1 G A 20 1.00 63 62 2 4 6 @AAAa,. point 0 nongenic 2059 into {Y57A10A.27} 1872 CB6880_redo II 12313125 1 G A 130 1.00 63 62 9 18 27 @AAaAAAaA,.AA.Aaa,A.a.aa,.A. point 0 nongenic,nongenic,nongenic -5381 upstream,-5630 upstream,451 into {C50E10.2},{C50E10.9},{C50E10.10} 1873 CB6880_redo II 12336412 1 A C 92 1.00 63 62 17 34 51 @,C.,,c.Cc,c..cccc,ccC.,Ccc.C,CCCccC.CCcc,CcCccCCc,. point 0 nongenic,nongenic -3446 upstream,768 into {C50E10.4},{C50E10.5} 1874 CB6880_redo II 12368872 1 G A 100 1.00 63 62 9 17 26 @,..aA.,Aa.aa,a.ATAa.AaaaAA point 0 nongenic -1933 upstream {Y57A10B.1} 1875 CB6880_redo II 12370055 1 C A 158 1.00 63 62 0 6 6 @aaaaAa point 0 SNP none {haw30684} 1876 CB6880_redo II 12387897 1 T A 255 1.00 63 62 0 17 17 @AAAAaaaaaAAaaAaaa point 0 SNP none {haw30711} 1879 CB6880_redo II 12411379 1 G A 187 1.19 63 62 8 23 31 @AAa...a,aAaAAaA.Aa,aAa,AAaA.AaA point 0 nongenic,nongenic -1256 upstream,157 downstream {F57G9.3},{Y57A10C.1} 1884 CB6880_redo II 12545245 1 C G 5 1.00 63 0 1 4 5 @GGgg. point 0 nongenic,nongenic -696 upstream,699 downstream {F49C5.9},{F49C5.5} 1885 CB6880_redo II 12545247 1 C G 3 1.00 63 0 1 3 4 @Ggg. point 0 nongenic,nongenic -698 upstream,697 downstream {F49C5.9},{F49C5.5} 1896 CB6880_redo II 12556599 1 G A 34 1.00 63 32 3 7 10 @,,,AaAaAaA point 0 missense GAG->AAG[Glu->Lys] {F49C5.11} 1897 CB6880_redo II 12556600 1 A G 39 1.00 63 32 3 7 10 @,,,GgGgGgG point 0 missense GAG->GGG[Glu->Gly] {F49C5.11} 1899 CB6880_redo II 12595553 1 C T 229 1.00 63 62 0 10 10 @TtTtTTTTtT point 0 SNP none {haw31224} 1900 CB6880_redo II 12645050 1 A T 255 1.00 63 62 4 23 27 @TtTTttttTTTtTTT,,t,TTtTTt,T point 0 nongenic -9613 upstream {Y38E10A.20} 1915 CB6880_redo II 12658929 1 C T 255 1.00 63 62 0 24 24 @TttTtttTtTttttTtTttTTtTT point 0 SNP none {haw31398} 1916 CB6880_redo II 12659508 1 A G 255 1.00 63 62 0 34 34 @ggGGGgGGGGGGGGGGGGGgGGGGGGgGggGggG point 0 nongenic,nongenic -9241 upstream,4241 into {Y38E10A.21},{Y38E10A.20} 1917 CB6880_redo II 12670938 1 A G 255 1.00 63 62 0 18 18 @GGgGGgGGGGGgGGgggG point 0 SNP none {haw31411} 1918 CB6880_redo II 12677412 1 T G 255 1.00 63 62 0 19 19 @ggGGGgggGgggGGGggGG point 0 missense AAC->ACC[Asn->Thr] {Y38E10A.23} 1919 CB6880_redo II 12683679 1 A T 237 1.00 63 62 0 12 12 @TttTTTTTtTTT point 0 nongenic,nongenic -10640 upstream,2944 into {Y46G5A.1a,Y46G5A.1b},{Y46G5A.2} 1920 CB6880_redo II 12684543 1 G A 255 1.00 63 62 0 26 26 @AAaaAAaAaAAAaaAAaaAAAAaAAA point 0 SNP none {haw31456} 1921 CB6880_redo II 12684928 1 G A 221 1.00 63 62 0 10 10 @aAaAAAAAAA point 0 SNP none {haw31457} 1924 CB6880_redo II 12749851 1 T C 90 9.25 63 62 615 -360 255 @CCC,C..,,,,..,,,,,,,,,..,,,.c...,Cc....C,,.,,,,,,,,CC,..c.,,,,,,C........,,C,C,...ccc.C,C,,..c..... point 0 nongenic -11610 upstream {Y46G5A.5} 1925 CB6880_redo II 12764190 1 G C 255 1.00 63 62 0 45 45 @CcCcccCCcCcCcccccCCCcCccCcCCCcCCccccCCCcccCcc point 0 SNP none {haw31561} 1926 CB6880_redo II 12764264 1 T C 5 1.00 63 6 4 7 11 @.,..ccccCCc point 0 nongenic 2863 into {Y46G5A.10} 1927 CB6880_redo II 12764265 1 A T 6 1.00 63 4 4 8 12 @.,..ttttTTtt point 0 nongenic 2862 into {Y46G5A.10} 1937 CB6880_redo II 12784485 1 T C 255 1.00 63 62 0 27 27 @cCCCcCccCCcCccCcCcCcCCCcCcc point 0 SNP none {haw31598} 1938 CB6880_redo II 12795899 1 G C 48 1.00 63 62 1 4 5 @C,CCc point 0 nongenic,nongenic,nongenic -7850 upstream,463 into,469 into {Y46G5A.35},{Y46G5A.17.2},{Y46G5A.17.1} 1941 CB6880_redo II 12800051 1 C A 255 1.00 63 62 3 30 33 @A.AaAAaaaaaaAAaaaaAAAa,AaAaa.AAaa point 0 nongenic,nongenic -3683 upstream,492 downstream {Y46G5A.17.1},{Y46G5A.18a} 1942 CB6880_redo II 12800299 1 G C 3 1.00 63 24 1 4 5 @.cCCc point 0 nongenic,nongenic -3931 upstream,244 downstream {Y46G5A.17.1},{Y46G5A.18a} 1944 CB6880_redo II 12803501 1 G A 125 1.31 63 62 0 5 5 @AAAAA point 0 nongenic,nongenic,nongenic -1270 upstream,-7133 upstream,1671 into {Y46G5A.19a.2},{Y46G5A.17.1},{Y46G5A.18a,Y46G5A.18b} 1953 CB6880_redo II 12829859 1 C A 151 1.00 63 62 0 7 7 @AAAAAAA point 0 nongenic,nongenic -756 upstream,-986 upstream {Y46G5A.24},{Y46G5A.23} 1954 CB6880_redo II 12835881 1 T G 50 1.00 63 16 2 5 7 @G,,gggg point 0 nongenic,nongenic 575 downstream,595 downstream {Y46G5A.26b},{Y46G5A.26a} 1959 CB6880_redo II 12881420 1 G A 255 1.06 63 62 0 17 17 @AaaAaAAAaaaAaaaAa point 0 nongenic,nongenic,nongenic -3406 upstream,-3764 upstream,431 into {Y46G5A.31},{F35C5.2},{F35C5.1} 1967 CB6880_redo II 12972710 1 G A 255 1.00 63 62 2 20 22 @,AAaAAaAaaAAAAaAaa.Aaa point 0 nongenic,nongenic,nongenic -3585 upstream,-7789 upstream,5356 into {Y38F1A.4},{Y38F1A.5.1},{Y38F1A.3} 7177 CB6880_redo II 13023501 1 X X -1000 -999.99 -1000 -1000 6 -3 3 @,..,.. indel -1 SNP none {uCE2-2163} 1968 CB6880_redo II 13062610 1 T A 255 1.00 63 62 0 19 19 @AAaaAaAAaaaAAAaaaAA point 0 SNP none {haw31867} 1969 CB6880_redo II 13063714 1 A G 29 1.00 63 0 1 3 4 @Ggg, point 0 SNP none {snp_F42G4[4]} 1970 CB6880_redo II 13090005 1 T A 255 1.00 63 62 0 46 46 @AaaaaaAAAAAaAaAaaAaaAaaAAaAAAaAAAAaAAaaAAAaAAa point 0 missense GAT->GAA[Asp->Glu] {Y81G3A.3} 1972 CB6880_redo II 13092162 1 G T 255 2.38 63 62 0 15 15 @TTtTTTTTtTTTTtt point 0 SNP none {snp_Y81G3A[2]} 1973 CB6880_redo II 13092217 1 G A 255 1.00 63 62 0 20 20 @AaAaAaaAAaaaaaAaAaaa point 0 SNP none {haw31901,snp_Y81G3A[3]} 1975 CB6880_redo II 13097749 1 C G 58 1.69 63 50 0 7 7 @GATgGgG point 0 nongenic,nongenic,nongenic -1202 upstream,407 downstream,435 into {Y81G3A.5b},{F29C12.3},{Y81G3A.5a} 1976 CB6880_redo II 13139448 1 G A 231 1.00 63 62 1 21 22 @AACAAaAaAAAAAAaAAAAA,A point 0 missense CCC->CTC[Pro->Leu] {F32A11.7} 1977 CB6880_redo II 13239531 1 G C 255 1.00 63 62 0 44 44 @CccCCccCCcCCCCCcCcccccCCCCcccCCcCCccCccccCCc point 0 missense GAC->GAG[Asp->Glu] {F15D4.4} 1981 CB6880_redo II 13278239 1 G A 255 1.00 63 62 3 30 33 @,AAAAaaaAAaaAAaAa.AaAaaaAaA,AAaaA point 0 nongenic,nongenic 157 into,5698 into {Y48C3A.5c},{Y48C3A.5a,Y48C3A.5b} 1982 CB6880_redo II 13310731 1 G A 13 1.00 63 32 1 5 6 @.aaaaa point 0 nongenic,nongenic 596 into,657 downstream {Y48C3A.3},{Y48C3A.7} 1984 CB6880_redo II 13350116 1 C A 255 1.00 63 62 0 36 36 @AAAaaAaAAAaAaaAAaAAaAAAaAaaAaAaAaaAA point 0 SNP none {haw32310} 1986 CB6880_redo II 13378340 1 G A 231 1.00 63 62 0 12 12 @AAAAAaAAAaaA point 0 SNP none {haw32413} 1988 CB6880_redo II 13408374 1 C A 191 1.00 63 62 0 8 8 @AaaaAaAa point 0 nongenic,nongenic,nongenic,nongenic -4178 upstream,1162 into,2021 into,2307 into {Y48C3A.18a},{Y48C3A.17b},{Y48C3A.17c},{Y48C3A.17a,Y48C3A.17d} 1989 CB6880_redo II 13434751 1 G T 126 1.19 63 62 0 6 6 @tttttt point 0 nongenic,nongenic 937 into,948 into {Y48E1C.4a},{Y48E1C.4b} 1990 CB6880_redo II 13434786 1 G T 127 1.00 63 62 0 6 6 @tttttT point 0 nongenic,nongenic 972 into,983 into {Y48E1C.4a},{Y48E1C.4b} 1993 CB6880_redo II 13440583 1 G T 255 1.00 63 62 2 28 30 @tTTt.TtTtTTT,tttTtTtTTTttTTTtT point 0 missense,SNP ACG->AAG[Thr->Lys],none {Y48E1C.3},{haw32539} 1994 CB6880_redo II 13452555 1 A G 255 2.50 63 62 0 27 27 @gggGGGgGgggGGgGGgggggggggGg point 0 nongenic,nongenic -5051 upstream,3796 into {E01G4.1},{E01G4.4} 1995 CB6880_redo II 13485389 1 T C 255 1.00 63 62 0 35 35 @CCCCcCCCccccCcccCCCCCccccCcCCcCcCCC point 0 silent TGT->TGC[Cys->Cys] {E01G4.6} 1997 CB6880_redo II 13528270 1 A G 255 1.00 63 62 0 32 32 @gGGGgGGGggGgGgggGGgGGGGgggGGGGgg point 0 nongenic,nongenic,nongenic 2857 into,2859 into,689 into {Y48E1B.14a.2},{Y48E1B.14a.1},{Y48E1B.14b} 2003 CB6880_redo II 13578367 1 A G 136 1.00 63 62 0 10 10 @GgGGGGGGGG point 0 nongenic,nongenic,nongenic -3397 upstream,-7267 upstream,2535 into {Y48E1B.5},{Y48E1B.8},{Y48E1B.7} 2004 CB6880_redo II 13579405 1 T A 255 1.19 63 62 0 22 22 @AAAAAAAAAAAAAaAAAAaaAA point 0 nongenic,nongenic,nongenic -4435 upstream,-6229 upstream,3573 into {Y48E1B.5},{Y48E1B.8},{Y48E1B.7} 2005 CB6880_redo II 13579440 1 T A 255 1.19 63 62 0 23 23 @AAAAaaAAaAaAaaaAAAaaAaa point 0 nongenic,nongenic,nongenic -4470 upstream,-6194 upstream,3608 into {Y48E1B.5},{Y48E1B.8},{Y48E1B.7} 2027 CB6880_redo II 13722005 1 C A 158 1.00 63 62 0 6 6 @AaAAaA point 0 SNP none {haw33062} 2036 CB6880_redo II 13801366 1 C A 255 1.00 63 62 0 13 13 @AAAAAaAAAaaaa point 0 SNP none {haw33213} 2037 CB6880_redo II 13835099 1 G C 29 1.00 63 4 3 5 8 @cCccc... point 0 silent CGC->CGG[Arg->Arg] {F08G2.6} 2038 CB6880_redo II 13835102 1 C G 4 1.00 63 28 4 5 9 @gGggg.... point 0 missense TGG->TGC[Trp->Cys] {F08G2.6} 2043 CB6880_redo II 13905903 1 T G 23 1.00 63 62 2 3 5 @GGg., point 0 nongenic,nongenic -2925 upstream,-3896 upstream {W02B8.2},{W02B8.1} 2070 CB6880_redo II 13991232 1 G A 255 1.00 63 62 3 40 43 @AAaAAAAaAaaAAaAaAaAAAaaAaaaAAaAAaa.AA.aaaa, point 0 missense CAT->TAT[His->Tyr] {Y39G8B.5} 2071 CB6880_redo II 13995463 1 G A 232 1.00 63 62 6 27 33 @aaAaaAAAAAa,AA..AaaAa,AAaA,,AAAaA point 0 nongenic -513 upstream {Y39G8B.7} 2072 CB6880_redo II 14014246 1 G A 222 1.00 63 62 2 16 18 @A.ATaaaaA.aaAaaAAa point 0 nongenic,nongenic 518 into,525 downstream {F01D5.9},{F01D5.8} 2073 CB6880_redo II 14015706 1 G A 255 1.00 63 62 4 40 44 @AAAaaaAA,aaaAaA,AaaAaa.aAAA.AAaaaAaAAAAAAAaa point 0 nongenic 1163 into {F01D5.9} 2074 CB6880_redo II 14019846 1 G A 3 3.31 12 26 2 2 4 @.aA, point 0 nongenic,nongenic -2977 upstream,1004 into {F01D5.9},{F01D5.10} 2076 CB6880_redo II 14081733 1 G A 255 1.00 63 62 0 12 12 @AaaaaaAaAAaA point 0 nongenic 7063 into {Y39G8C.1} 2077 CB6880_redo II 14118584 1 G A 255 1.00 63 62 2 30 32 @AaAaaAAa,AAAa.AaaaaaAaaaAAAaaaaa point 0 nongenic,nongenic -570 upstream,3485 into {K09E4.4.2},{K09E4.4.1} 2078 CB6880_redo II 14156173 1 C A 243 1.00 63 62 3 29 32 @aa,AAAaaaa.aAaaaaaaaaaaa.aAaaaaa point 0 nongenic,nongenic,nongenic 503 into,609 downstream,615 downstream {Y48B6A.3},{Y48B6A.2.1},{Y48B6A.2.2} 2079 CB6880_redo II 14162529 1 G T 255 1.00 63 62 5 41 46 @tT.tttTt.T.TttTTttTTt.TTTTttTtTTTtTtttt.ttTtTT point 0 missense GGT->GTT[Gly->Val] {Y48B6A.3} 2080 CB6880_redo II 14171676 1 C T 255 1.00 63 62 0 31 31 @ttTTttttTTTtTttTtTTtTTttTTtTttT point 0 SNP none {haw33776} 2081 CB6880_redo II 14211019 1 C G 241 1.00 63 62 0 19 19 @GTggggggGggggggGggg point 0 SNP none {haw33827} 2082 CB6880_redo II 14243800 1 T G 3 1.00 63 2 0 5 5 @GGGGc point 0 nongenic,nongenic -306 upstream,-6795 upstream {Y48B6A.11},{Y48B6A.14.1} 2085 CB6880_redo II 14260657 1 A C 143 2.25 63 62 0 12 12 @CCCCCCCCCCCC point 0 nongenic,nongenic -15895 upstream,4405 into {Y54G11A.3},{Y54G11A.1} 2088 CB6880_redo II 14267620 1 A G 58 1.00 63 0 0 4 4 @gGGg point 0 nongenic,nongenic -8932 upstream,1436 into {Y54G11A.3},{Y54G11A.1} 2089 CB6880_redo II 14272425 1 G A 255 1.00 63 62 0 13 13 @aaAAAAAaAAaaa point 0 nongenic,nongenic -3369 upstream,-4127 upstream {Y54G11A.1},{Y54G11A.3} 2090 CB6880_redo II 14276713 1 T C 255 1.00 63 62 0 27 27 @CCCCCCcCcCCCcCCcCcCcCCCccCc point 0 silent,SNP TTG->CTG[Leu->Leu],none {Y54G11A.3},{haw33969} 2091 CB6880_redo II 14279456 1 C A 155 4.88 63 62 0 22 22 @aAaaAaaAAAaaAaaAaaaaaa point 0 nongenic,nongenic -10400 upstream,2904 into {Y54G11A.1},{Y54G11A.3} 2092 CB6880_redo II 14283453 1 G A 230 1.00 63 62 2 15 17 @a.AaaAA,aAAAAAaaA point 0 nongenic,nongenic -14397 upstream,409 into {Y54G11A.1},{Y54G11A.3} 2093 CB6880_redo II 14291335 1 A C 19 1.00 63 46 3 8 11 @cCC.c.cc,cc point 0 nongenic,nongenic -1390 upstream,-2364 upstream {Y54G11A.4},{Y54G11A.15} 2094 CB6880_redo II 14311576 1 T C 255 1.00 63 62 0 26 26 @CCCcccCccCCccCcCCCccccCCcc point 0 nongenic,nongenic -6483 upstream,-894 upstream {Y54G11A.14},{Y54G11A.13} 2095 CB6880_redo II 14314712 1 G A 254 1.25 63 62 2 20 22 @AaaAAaAAa,AAAaa.AAaAAa point 0 nongenic,nongenic -3347 upstream,-4030 upstream {Y54G11A.14},{Y54G11A.13} 2096 CB6880_redo II 14316496 1 A T 203 1.00 63 62 0 10 10 @tTtttttTtt point 0 nongenic,nongenic -1563 upstream,-5814 upstream {Y54G11A.14},{Y54G11A.13} 2098 CB6880_redo II 14337929 1 G T 5 3.12 12 0 4 5 9 @.a...TTTt point 0 SNP none {haw34038} 2109 CB6880_redo II 14406898 1 T C 255 1.00 63 62 0 53 53 @CccCccCCCCccCccccCCcCcccCcCcCCCCCccCcCCCCCCccCCcCCccc point 0 silent,SNP TTT->TTC[Phe->Phe],none {F26H11.2c,F26H11.2d.1,F26H11.2d.2,F26H11.2e,F26H11.2f,F26H11.2g},{snp_F26H11[1]} 2110 CB6880_redo II 14463625 1 A G 3 1.12 63 18 3 5 8 @,.,gcggg point 0 nongenic 1190 into {Y54G11B.1} 2115 CB6880_redo II 14738880 1 T C 59 1.00 63 34 3 6 9 @,.,cCccCc point 0 nongenic,nongenic -10927 upstream,266 into {C09F9.3a,C09F9.3b,C09F9.3c},{Y54E2A.1} 2117 CB6880_redo II 14762312 1 T G 3 8.62 63 14 3 5 8 @GGG,GG,. point 0 nongenic,nongenic -4598 upstream,7742 into {Y54E2A.5},{Y54E2A.4} 163741 CB6880_redo II 14780761 61 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered non-exonic, 2493 to 2554 bp into {Y54E2A.8} 2121 CB6880_redo II 14796259 1 G T 255 1.00 63 62 0 38 38 @tttttTttTtttTTtTttttTTTttTTTTttTTTtttt point 0 missense,missense,SNP GGG->GTG[Gly->Val],TGG->TGT[Trp->Cys],none {Y54E2A.11b.1,Y54E2A.11b.2},{Y54E2A.11a.1,Y54E2A.11a.2},{uCE2-2369} 2126 CB6880_redo II 14872831 1 C A 255 1.00 63 62 0 24 24 @aAAAaaaAAaaaaaaaAaaaAaaa point 0 nongenic 2986 into {R05H10.3a,R05H10.3b} 2130 CB6880_redo II 14993339 1 T C 66 2.12 63 62 32 46 78 @.....,,CC..C.CC.CCCCC.ccC.c.cccccCCc.cc.ccCC..ccc.,c.ccC.C,cC,c.CcCCc.C.C...., point 0 nongenic 33 downstream {Y53F4B.7} 2131 CB6880_redo II 15008477 1 G A 219 1.00 63 62 3 27 30 @cA.aAa,A,AAaAaaaAAAaaAAAAaAAAt point 0 missense TCC->TTC[Ser->Phe] {Y53F4B.9} 2132 CB6880_redo II 15043614 1 C T 102 1.19 63 62 0 17 17 @ttttTttTTTtTtTTTt point 0 ncRNA none {Y53F4B.45} 2133 CB6880_redo II 15043625 1 C G 166 1.31 63 62 0 20 20 @GGGgGgGGGgGGggGGgGGg point 0 ncRNA none {Y53F4B.45} 2135 CB6880_redo II 15096773 1 G A 64 6.62 27 62 1 7 8 @AAA,aAAA point 0 nongenic,nongenic -13279 upstream,6692 into {Y53F4B.39b},{Y53F4B.21} 2136 CB6880_redo II 15137490 1 G C 15 1.00 63 0 0 6 6 @CCCCCC point 0 nongenic,nongenic -3566 upstream,2096 into {Y53F4B.24},{Y53F4B.25} 2138 CB6880_redo II 15137495 1 T C 3 7.81 63 0 1 5 6 @CCCC,g point 0 nongenic,nongenic -3571 upstream,2101 into {Y53F4B.24},{Y53F4B.25} 2143 CB6880_redo II 15240907 1 G A 163 2.94 50 62 5 10 15 @a,,a,a,AaAA.AAA point 0 nongenic 3927 into {Y46E12BL.2} 2144 CB6880_redo II 15240968 1 C T 3 1.38 63 62 5 5 10 @,T,T,Tt,T. point 0 nongenic 3866 into {Y46E12BL.2} 2145 CB6880_redo II 15248198 1 G A 255 1.00 63 62 2 38 40 @,AAAAaaaaaaAAAAaaAAaaAaAaAAAaaaAaA.Aaaaa point 0 silent TCC->TCT[Ser->Ser] {Y46E12BL.1} 2146 CB6880_redo III 7082 1 T G 8 1.00 63 12 2 4 6 @,GGG,G point 0 nongenic,nongenic -1773 upstream,-4164 upstream {H10E21.2},{cTel54X.1} 2147 CB6880_redo III 53304 1 G C 12 1.00 63 0 0 4 4 @CCCC point 0 nongenic -4396 upstream {W05G11.2} 2165 CB6880_redo III 118298 1 T G 255 1.00 63 62 1 52 53 @ggGggggGgGGGggGgG.GgGgGggggGGgGGggGGGgggGgGGgggggGgGG point 0 silent GTT->GTG[Val->Val] {C29F9.5} 2166 CB6880_redo III 124105 1 G T 255 1.00 63 62 0 41 41 @TtTTTTTTTtttTTTTTTtTttTttTTTTtTtTttTTtTTt point 0 missense,SNP AGG->ATG[Arg->Met],none {C29F9.4},{pas12618} 2178 CB6880_redo III 391810 1 A G 3 9.12 0 4 4 5 9 @,.,G.GGGg point 0 nongenic -9240 upstream {K10F12.7} 2179 CB6880_redo III 391815 1 T C 3 7.25 29 4 3 6 9 @CC.,CC.gg point 0 nongenic -9245 upstream {K10F12.7} 2186 CB6880_redo III 498685 1 G C 6 3.69 13 2 0 6 6 @CcccAa point 0 nongenic 3905 into {F30H5.1} 2188 CB6880_redo III 498870 1 C A 135 4.19 63 62 12 39 51 @AA,aAa,aaaaaaaaa,A,,aaaaAaa,aaaaAa,a,.aAa,a,aaaaaa, point 0 nongenic 3720 into {F30H5.1} 2204 CB6880_redo III 661018 1 A G 36 1.00 63 44 3 7 10 @GgGGggG,,. point 0 silent AGA->AGG[Arg->Arg] {C09F5.1} 2206 CB6880_redo III 665394 1 T G 27 1.00 63 62 2 2 4 @.,GG point 0 nongenic 867 into {C09F5.3} 2207 CB6880_redo III 691185 1 C T 255 1.00 63 62 0 23 23 @TTTtttTTTTTtTTTTTtttTtt point 0 silent,SNP GAG->GAA[Glu->Glu],none {W02B3.7},{haw37341} 2208 CB6880_redo III 703727 1 A G 5 5.56 0 0 10 10 20 @GG..gg..Gg..g..g.Gg, point 0 nongenic,nongenic,nongenic -2600 upstream,-7276 upstream,12108 into {C24A1.2a},{C24A1.3b},{C24A1.2b} 2209 CB6880_redo III 705103 1 G C 106 5.56 63 62 2 6 8 @ccCccC., point 0 nongenic,nongenic,nongenic -1224 upstream,-8652 upstream,10732 into {C24A1.2a},{C24A1.3b},{C24A1.2b} 2210 CB6880_redo III 752175 1 G T 255 1.00 63 62 0 13 13 @TtttTttTttTTT point 0 nongenic,nongenic -5489 upstream,246 into {T17H7.4a.1,T17H7.4a.2,T17H7.4b.1,T17H7.4b.2,T17H7.4c.1,T17H7.4c.2,T17H7.4g.2},{T17H7.4a.3,T17H7.4b.3,T17H7.4c.3,T17H7.4j} 2215 CB6880_redo III 758901 1 T A 102 1.00 63 10 0 4 4 @aaAa point 0 nongenic,nongenic -2583 upstream,-831 upstream {F42G9.4},{T17H7.7} 2216 CB6880_redo III 758902 1 C T 99 1.00 63 62 0 4 4 @ttTt point 0 nongenic,nongenic -2582 upstream,-832 upstream {F42G9.4},{T17H7.7} 2217 CB6880_redo III 791554 1 A C 57 3.31 63 24 2 3 5 @Ccc,. point 0 nongenic,nongenic -2737 upstream,2128 into {B0412.4.1},{F42G9.7} 2222 CB6880_redo III 835904 1 G C 5 1.00 63 62 2 3 5 @,,ccC point 0 missense CCG->GCG[Pro->Ala] {K02F3.8} 2225 CB6880_redo III 931533 1 T C 20 6.00 63 62 93 162 255 @CC,C,CC,C...C,.gC,CCCC,...,Cc..C,,,CC.CCCC,C,C.c,c.c.cCCCC.ccCCCCCCCC.ccCC..,CCC,cccCcc.cCc.c.cccCC point 0 nongenic -5231 upstream {F23H11.8a,F23H11.8b.1,F23H11.8b.2,F23H11.8b.3} 2234 CB6880_redo III 976390 1 C T 255 1.00 63 62 0 39 39 @TtttTtTtttTtttttTtttTTttTTTtTTTtttTTttt point 0 missense AGC->AAC[Ser->Asn] {R06B10.2} 2235 CB6880_redo III 979254 1 T G 3 1.00 63 2 0 5 5 @GGCGG point 0 nongenic,nongenic,nongenic,nongenic -3993 upstream,-7241 upstream,1185 into,1882 into {R06B10.4a,R06B10.5.2},{R06B10.1},{R06B10.2},{R06B10.5.1} 2236 CB6880_redo III 979256 1 A G 12 1.00 63 2 0 4 4 @GGGG point 0 nongenic,nongenic,nongenic,nongenic -3991 upstream,-7243 upstream,1183 into,1884 into {R06B10.4a,R06B10.5.2},{R06B10.1},{R06B10.2},{R06B10.5.1} 2248 CB6880_redo III 1101643 1 A C 5 1.00 63 0 2 10 12 @CCCCCGccc.g, point 0 nongenic -1568 upstream {F58B6.2} 7197 CB6880_redo III 1177844 0 X X -1000 -999.99 -1000 -1000 6 -4 2 @,..,.g,G indel 0 nongenic,nongenic,nongenic -1301 upstream,-3037 downstream,-4148 upstream {Y92C3A.3},{Y71D11A.1},{Y119D3B.13} 2261 CB6880_redo III 1178384 1 G T 7 1.50 63 56 1 4 5 @AA,tt point 0 nongenic,nongenic,nongenic -1841 upstream,-3607 upstream,2497 into {Y92C3A.3},{Y119D3B.13},{Y71D11A.1} 2277 CB6880_redo III 1258807 1 T C 3 2.50 0 2 8 11 19 @C.,,,,cccccc.c.cc,c point 0 nongenic,nongenic -402 upstream,-606 upstream {Y119D3B.19},{Y119D3B.4} 7200 CB6880_redo III 1302058 0 X X -1000 -999.99 -1000 -1000 38 -33 5 @,,,,,,,,,,,,,,.....,,,,,,,,,,,,,.,,,,cC, indel 0 nongenic -1646 upstream {Y119D3A.1} 2297 CB6880_redo III 1318411 1 C G 255 1.06 63 62 0 26 26 @GGgGgGgggGgGgGggGggggGgGGG point 0 SNP none {haw38527} 2298 CB6880_redo III 1323866 1 G A 255 1.00 63 62 0 36 36 @taaaAaAAAAAAAaaAaaAAaaAaaAaaaaAaaaaa point 0 nongenic,nongenic -178 upstream,-4767 upstream {Y82E9BL.10},{Y82E9BL.18} 2311 CB6880_redo III 1552881 1 G C 4 1.00 63 0 1 4 5 @CCCc. point 0 missense GCG->GGG[Ala->Gly] {Y67D2.6} 2312 CB6880_redo III 1579536 1 T A 145 8.12 63 62 13 15 28 @aaaa,,,A,,a,,aa,,,aaa,aaa,,a point 0 nongenic 1249 into {Y22D7AL.7} 2313 CB6880_redo III 1579537 1 A T 144 7.81 63 62 13 16 29 @tttt,,,T,,t,,tt,,,ttt,ttt,,tt point 0 nongenic 1248 into {Y22D7AL.7} 2314 CB6880_redo III 1629052 1 C T 149 1.00 63 62 0 5 5 @TtTtT point 0 SNP none {haw39277} 2315 CB6880_redo III 1636696 1 G A 249 1.00 63 62 0 12 12 @aAAAAAAaAaAA point 0 SNP none {haw39295} 2316 CB6880_redo III 1636742 1 C A 148 1.00 63 62 0 8 8 @AAAAAAaA point 0 SNP none {haw39297} 2317 CB6880_redo III 1636775 1 G A 148 1.00 63 62 0 5 5 @AaAAa point 0 SNP none {haw39298} 2318 CB6880_redo III 1636782 1 G T 50 1.00 63 60 0 4 4 @NTtt point 0 SNP none {haw39299} 2321 CB6880_redo III 1638524 1 C G 3 2.00 63 0 1 4 5 @G.gga point 0 nongenic,nongenic -2927 upstream,973 downstream {Y22D7AL.3},{Y22D7AL.4} 2322 CB6880_redo III 1638530 1 A G 16 2.00 63 14 1 4 5 @G.ggg point 0 nongenic,nongenic -2921 upstream,979 downstream {Y22D7AL.3},{Y22D7AL.4} 2323 CB6880_redo III 1642726 1 A T 255 1.00 63 62 0 21 21 @TTttttTtttTtTtttTttTt point 0 nongenic,nongenic 388 into,89 into {Y22D7AL.2},{Y22D7AL.12} 2328 CB6880_redo III 1745891 1 C T 255 1.00 63 62 0 38 38 @TtTTtTtTttTTTtttttTTTtTTtTTTttTTttTTtt point 0 nongenic -12798 upstream {Y22D7AR.13.1} 2329 CB6880_redo III 1761058 1 A C 44 1.00 63 24 1 4 5 @,CCCC point 0 nongenic -2454 upstream {Y46E12A.1} 2335 CB6880_redo III 1863224 1 G T 187 1.00 63 62 0 12 12 @tttttttttttt point 0 SNP none {haw39736} 2336 CB6880_redo III 1878127 1 C T 161 1.00 63 62 0 8 8 @TTTTTTTT point 0 nongenic -226 upstream {Y39A3CR.1a,Y39A3CR.1b} 2339 CB6880_redo III 1932094 1 A G 3 1.00 63 0 1 4 5 @CGg.g point 0 silent CGA->CGG[Arg->Arg] {F53A3.4a,F53A3.4b} 2341 CB6880_redo III 2042239 1 T A 255 1.00 63 62 0 17 17 @AAaAAAaAaAAaAaAAA point 0 SNP none {haw40007} 7205 CB6880_redo III 2077415 0 X X -1000 -999.99 -1000 -1000 7 -6 1 @,T.,G,,.ccg, indel 3 nongenic,nongenic -5392 upstream,-906 upstream {Y48G9A.10},{Y39A3A.4} 2348 CB6880_redo III 2282476 1 G T 100 1.56 63 62 13 23 36 @TTtTTTTttTTttTtTttT....,..tt,T.,,T,. point 0 nongenic,nongenic -8964 upstream,5211 into {Y54F10BM.15},{Y54F10BM.3} 2354 CB6880_redo III 2327186 1 G A 125 1.00 63 62 0 4 4 @aAAa point 0 nongenic,nongenic 279 into,297 downstream {Y54F10BM.12},{Y54F10BM.2} 2359 CB6880_redo III 2365479 1 T C 154 4.38 63 62 0 18 18 @CCCCCCCCCCCCCCCcCC point 0 SNP none {haw40568} 2360 CB6880_redo III 2365480 1 A G 127 4.75 63 62 0 17 17 @GGGGGGGGGGGGGGtGG point 0 nongenic 787 into {H04J21.2} 2369 CB6880_redo III 2405323 1 C T 255 1.00 63 62 0 16 16 @tttTtTTTTTttttTT point 0 SNP none {haw40696} 2370 CB6880_redo III 2408271 1 T G 19 1.00 63 2 0 5 5 @GGGCG point 0 nongenic 1969 into {W04B5.4} 2383 CB6880_redo III 2565617 1 G A 255 1.25 63 62 0 29 29 @AaaaAAaAaaAAAAaaaaaaaaaAAaAAa point 0 nongenic,nongenic -1638 upstream,556 into {Y54F10AM.11},{Y54F10AM.1} 2384 CB6880_redo III 2567383 1 T A 14 1.00 63 62 19 20 39 @A,,A.AAa,A,,.,a.A,,a.aAa,a,,AaAAAa.a.,. point 0 nongenic 73 downstream {Y54F10AR.2} 2389 CB6880_redo III 2653185 1 A C 145 1.00 63 62 0 6 6 @cccccC point 0 nongenic -4887 upstream {H19M22.2a,H19M22.2b,H19M22.2d} 2394 CB6880_redo III 2701751 1 A T 159 1.00 63 62 0 7 7 @tTtTTTT point 0 SNP none {haw41217} 2395 CB6880_redo III 2728181 1 A T 218 1.00 63 62 0 10 10 @TTTttTTtTt point 0 SNP none {haw41299} 2396 CB6880_redo III 2728812 1 G T 184 1.56 63 62 0 7 7 @TttttTT point 0 nongenic,nongenic -3729 upstream,2712 into {Y71H2AM.11},{Y71H2AM.7} 2403 CB6880_redo III 2762254 1 T G 3 9.88 52 16 0 8 8 @CCgggggc point 0 nongenic -1447 upstream {Y71H2AM.16} 2412 CB6880_redo III 2809673 1 A G 163 1.00 63 62 0 7 7 @ggGGGGG point 0 nongenic 1320 into {Y71H2AM.3} 2413 CB6880_redo III 2822658 1 G C 178 5.19 63 62 0 11 11 @CCCCCCCCCCC point 0 nongenic,nongenic,nongenic -4401 upstream,-7696 upstream,2000 into {Y71H2AM.1.1,Y71H2AM.1.2},{Y71H2AM.23.1},{Y71H2AM.2} 2419 CB6880_redo III 2980599 1 A T 255 1.00 63 62 0 31 31 @tTTTTTtTtTttttTtttTTTttTTtTtTTT point 0 SNP none {haw41691} 2421 CB6880_redo III 3005145 1 A C 29 6.19 63 10 2 3 5 @,G,cc point 0 nongenic,nongenic -15098 upstream,9393 into {Y55D5A.4},{Y55D5A.5a} 163743 CB6880_redo III 3018115 49 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered,uncovered non-exonic, 10520 to 10569 bp into,non-exonic, 10627 to 10676 bp into {Y55D5A.5b},{Y55D5A.5a} 2427 CB6880_redo III 3063296 1 C G 3 1.00 63 2 1 4 5 @GGGG. point 0 nongenic,nongenic -3 upstream,-4999 upstream {H06I04.6},{H06I04.4a.1} 2435 CB6880_redo III 3162633 1 A G 221 1.00 63 62 0 10 10 @GgGggGGGGg point 0 nongenic -3640 upstream {R148.5a,R148.5b} 2436 CB6880_redo III 3162638 1 A G 216 1.00 63 62 0 10 10 @GgGggGGGGg point 0 nongenic -3635 upstream {R148.5a,R148.5b} 2444 CB6880_redo III 3252687 1 G T 255 1.00 63 62 0 24 24 @ttTtttTtTTTTtTTtttTTtTTT point 0 nongenic,nongenic -2701 upstream,446 into {Y53G8AL.4},{Y53G8AL.3} 2445 CB6880_redo III 3254400 1 G C 185 1.00 63 62 0 10 10 @CCccCCCCCC point 0 nongenic,nongenic -1267 upstream,386 into {Y53G8AL.3},{Y53G8AM.4} 2446 CB6880_redo III 3255111 1 C A 212 1.00 63 62 0 9 9 @aaAAaAAAa point 0 SNP none {haw42163} 2447 CB6880_redo III 3255125 1 C T 224 1.00 63 62 0 12 12 @TtTTTtTttTTT point 0 SNP none {haw42164} 2448 CB6880_redo III 3255131 1 G T 246 1.00 63 62 0 12 12 @TTtTttTTTTTT point 0 nongenic,nongenic -1998 upstream,478 into {Y53G8AL.3},{Y53G8AM.4} 2449 CB6880_redo III 3271710 1 A G 220 1.00 63 62 0 11 11 @GGGgGGGGgGg point 0 SNP none {haw42190} 2450 CB6880_redo III 3271738 1 T A 255 1.00 63 62 0 22 22 @AAAaAaaaaAAAaaaAAAAAaa point 0 SNP none {haw42191} 2458 CB6880_redo III 3346937 1 C G 27 1.00 63 60 3 3 6 @GgG... point 0 nongenic,nongenic -14183 upstream,2073 into {F45H7.2c},{F45H7.2a,F45H7.2b} 2459 CB6880_redo III 3347670 1 A G 100 1.00 63 16 0 5 5 @GGgGg point 0 nongenic,nongenic -13450 upstream,2806 into {F45H7.2c},{F45H7.2a,F45H7.2b} 2467 CB6880_redo III 3347713 1 C T 84 1.00 63 62 1 3 4 @.ttT point 0 nongenic,nongenic -13407 upstream,2849 into {F45H7.2c},{F45H7.2a,F45H7.2b} 2468 CB6880_redo III 3347714 1 T C 84 1.00 63 62 1 3 4 @.ccC point 0 nongenic,nongenic -13406 upstream,2850 into {F45H7.2c},{F45H7.2a,F45H7.2b} 2469 CB6880_redo III 3373714 1 G A 255 1.00 63 62 0 25 25 @aaAAAAAAaaaAaaAaaaAAAaaaa point 0 SNP none {haw42340} 2470 CB6880_redo III 3377952 1 C G 13 1.00 63 28 1 4 5 @,gggg point 0 nongenic,nongenic -7753 upstream,556 into {F45H7.4.1},{F45H7.6} 2489 CB6880_redo III 3386554 1 T A 3 9.69 0 4 1 5 6 @CAA.AA point 0 nongenic,nongenic,nongenic -16355 upstream,1269 into,341 downstream {F45H7.4.1},{F45H7.6},{C56G7.2} 2490 CB6880_redo III 3387032 1 T C 151 2.62 63 54 0 10 10 @cCCCcCCccg point 0 missense AAC->AGC[Asn->Ser] {C56G7.2} 2491 CB6880_redo III 3429127 1 A C 128 8.88 63 62 0 12 12 @cccccccccccc point 0 nongenic 721 into {K01A11.1} 2492 CB6880_redo III 3430901 1 A C 37 1.00 63 2 2 3 5 @ccC.. point 0 nongenic 438 into {K01A11.1} 7219 CB6880_redo III 3436724 0 X X -1000 -999.99 -1000 -1000 3 -1 2 @..,Gg indel 0 nongenic -5385 upstream {K01A11.1} 2498 CB6880_redo III 3442522 1 C T 30 1.00 63 4 0 4 4 @ttTt point 0 nongenic,nongenic -11183 upstream,1675 into {K01A11.1},{K01A11.4} 2501 CB6880_redo III 3463329 1 C G 255 1.00 63 62 0 22 22 @GGgggGggGggGGggGGGGGgG point 0 SNP none {haw42422} 2502 CB6880_redo III 3466299 1 G A 26 1.00 63 42 2 2 4 @aa.. point 0 nongenic 1349 into {C34C12.3} 2503 CB6880_redo III 3467137 1 T C 255 1.00 63 62 0 19 19 @CcccCCcCcCCCcCcCcCc point 0 SNP,three_prime_UTR none,none {haw42435},{C34C12.3} 2504 CB6880_redo III 3467466 1 C T 255 1.00 63 62 0 37 37 @tTTTTtTTTttTTtTTTTTtTttttTttTTtTTTTTt point 0 SNP,three_prime_UTR none,none {haw42438},{C34C12.3} 2508 CB6880_redo III 3468663 1 A C 255 1.00 63 62 0 20 20 @cccccccCccCCCcCCCCCc point 0 nongenic,nongenic,nongenic -3324 upstream,1013 into,972 into {C34C12.5.1,C34C12.5.2},{C34C12.4.1},{C34C12.4.2} 2509 CB6880_redo III 3517342 1 C T 3 8.38 0 24 6 10 16 @t,T..tTT.t.tttt. point 0 nongenic,nongenic -595 upstream,2250 into {M01F1.5.2},{M01F1.5.1} 2512 CB6880_redo III 3540487 1 A T 110 1.00 63 62 2 6 8 @.,TttTtt point 0 nongenic,nongenic -3033 upstream,1106 into {C54C6.6},{C54C6.2} 2513 CB6880_redo III 3540491 1 C A 201 1.00 63 62 2 10 12 @.,AaaAaaAAAA point 0 SNP none {haw42478} 2514 CB6880_redo III 3594905 1 T C 5 1.00 63 32 3 3 6 @ccC.,. point 0 nongenic,nongenic,nongenic -13227 upstream,-299 upstream,4188 into {C48D5.3},{C48D5.2c},{C48D5.2a} 2515 CB6880_redo III 3599952 1 G T 80 1.00 63 62 2 9 11 @.,cctTcTTtT point 0 nongenic,nongenic,nongenic,nongenic -18274 upstream,4748 into,834 into,9235 into {C48D5.3},{C48D5.2c},{C48D5.2b},{C48D5.2a} 2516 CB6880_redo III 3599953 1 T C 191 1.00 63 62 1 10 11 @.GcccCcCCcC point 0 nongenic,nongenic,nongenic,nongenic -18275 upstream,4749 into,835 into,9236 into {C48D5.3},{C48D5.2c},{C48D5.2b},{C48D5.2a} 2517 CB6880_redo III 3606223 1 A T 243 1.00 63 62 0 14 14 @TtTTTTttTttTTN point 0 nongenic,nongenic,nongenic -24545 upstream,5324 into,5753 into {C48D5.3},{C48D5.2b,C48D5.2c},{C48D5.2a} 2518 CB6880_redo III 3611202 1 C A 255 1.00 63 62 0 15 15 @AAAaAaAAaaAaaaa point 0 SNP none {haw42583} 2519 CB6880_redo III 3613833 1 G T 155 1.00 63 62 0 6 6 @tTttTT point 0 SNP none {haw42588} 2521 CB6880_redo III 3616756 1 C T 255 1.00 63 62 0 13 13 @tTTtTtTtTtTtT point 0 SNP none {haw42597} 2522 CB6880_redo III 3625872 1 T A 255 1.00 63 62 0 30 30 @aAaaaaaAaaaaaAaaaAaAaaaAAAaAAA point 0 SNP none {haw42613} 2523 CB6880_redo III 3641475 1 G T 255 1.00 63 62 0 13 13 @TtTtTTTttTTTT point 0 SNP none {haw42649} 2524 CB6880_redo III 3641888 1 G A 255 1.00 63 62 0 13 13 @AAAaAAAAaaaaa point 0 SNP none {haw42650} 2525 CB6880_redo III 3645769 1 C A 254 1.00 63 62 0 16 16 @aaaaaAaaaaAaAaaA point 0 nongenic,nongenic 1404 into,1416 into {C46F11.1b},{C46F11.1a} 2526 CB6880_redo III 3645821 1 T G 255 1.00 63 62 0 21 21 @gggggggGGGgggggGgGgGg point 0 nongenic,nongenic 1456 into,1468 into {C46F11.1b},{C46F11.1a} 2530 CB6880_redo III 3666746 1 T A 14 2.00 0 6 0 4 4 @AAaa point 0 nongenic,nongenic -2272 upstream,583 downstream {C46F11.4},{C46F11.6} 2531 CB6880_redo III 3666765 1 T G 5 2.19 0 16 1 4 5 @GGgg, point 0 nongenic,nongenic -2291 upstream,564 downstream {C46F11.4},{C46F11.6} 2532 CB6880_redo III 3666893 1 T A 7 1.00 63 10 2 2 4 @,,aA point 0 nongenic,nongenic -2419 upstream,436 downstream {C46F11.4},{C46F11.6} 2533 CB6880_redo III 3666894 1 G T 10 1.00 63 6 2 2 4 @,,tT point 0 nongenic,nongenic -2420 upstream,435 downstream {C46F11.4},{C46F11.6} 2534 CB6880_redo III 3673851 1 T G 3 1.00 63 4 3 5 8 @GGGG,.c. point 0 nongenic -3435 upstream {C46F11.6} 2535 CB6880_redo III 3767765 1 G A 169 1.00 63 62 8 19 27 @AA,AA,.,AaAaAa,AaA,aAa,,aAa point 0 nongenic,nongenic -2238 upstream,-756 upstream {C44F1.1},{C44F1.2} 2536 CB6880_redo III 3805251 1 C G 29 1.00 63 62 4 6 10 @.,,,GGGgGg point 0 nongenic,nongenic -904 upstream,501 into {T24A11.2},{T24A11.3} 2543 CB6880_redo III 3995385 1 G A 117 1.00 63 62 0 7 7 @aACaaAA point 0 SNP none {haw42814} 2546 CB6880_redo III 3995403 1 G T 122 1.00 63 62 0 5 5 @ttttT point 0 nongenic -3250 upstream {C36E8.2} 2553 CB6880_redo III 4056056 1 A T 100 1.00 63 62 0 7 7 @ttttTtt point 0 nongenic,nongenic -19242 upstream,1893 into {T02C12.1},{E03A3.2} 2554 CB6880_redo III 4056057 1 T A 69 1.00 63 62 1 5 6 @a.aAaa point 0 nongenic,nongenic -19243 upstream,1892 into {T02C12.1},{E03A3.2} 2555 CB6880_redo III 4056058 1 A C 95 1.00 63 62 0 5 5 @ccCcc point 0 nongenic,nongenic -19244 upstream,1891 into {T02C12.1},{E03A3.2} 2556 CB6880_redo III 4059720 1 C A 58 1.00 63 54 1 6 7 @,aAaaaa point 0 missense GTT->TTT[Val->Phe] {E03A3.4} 2557 CB6880_redo III 4059721 1 T C 61 1.00 63 54 1 7 8 @,cCccccc point 0 silent CAA->CAG[Gln->Gln] {E03A3.4} 2559 CB6880_redo III 4112942 1 G C 244 1.00 63 62 0 15 15 @cccCccccccCcccc point 0 SNP none {haw42904} 2560 CB6880_redo III 4209221 1 C A 116 1.00 63 62 1 8 9 @AAAAAAaA. point 0 nongenic,nongenic -1312 upstream,983 downstream {F43C1.1},{R74.8a} 2561 CB6880_redo III 4209222 1 A C 136 1.00 63 62 0 9 9 @CCCCCCcCc point 0 nongenic,nongenic -1311 upstream,984 downstream {F43C1.1},{R74.8a} 2562 CB6880_redo III 4209243 1 C A 161 0.00 63 62 0 11 11 @AaAAAAAAAAA point 0 nongenic -1290 upstream {F43C1.1} 2563 CB6880_redo III 4209244 1 G C 160 0.00 63 62 0 11 11 @CcCCCCCCCCC point 0 nongenic -1289 upstream {F43C1.1} 2564 CB6880_redo III 4286569 1 C T 255 1.00 63 62 0 28 28 @TTTTTTTTTTTTttTTTTTTTTTtTTTT point 0 SNP none {haw42951} 2565 CB6880_redo III 4340354 1 C T 5 1.00 63 38 2 2 4 @tT,, point 0 three_prime_UTR none {B0285.1} 2566 CB6880_redo III 4347357 1 C A 49 1.00 63 22 4 6 10 @....Aaaaaa point 0 nongenic,nongenic -4858 upstream,2049 into {B0285.6},{B0285.5} 2569 CB6880_redo III 4440341 1 G A 255 1.00 63 62 0 15 15 @AAaaAaAAaAAAaAa point 0 SNP none {haw42977,snp_C28A5[2]} 2570 CB6880_redo III 4440871 1 T A 255 1.00 63 62 0 20 20 @AaaaAaaaAAAAAAAAaAaa point 0 SNP none {haw42978} 2571 CB6880_redo III 4445016 1 C G 25 1.00 63 10 0 4 4 @ggGG point 0 nongenic 882 downstream {C28A5.3} 2572 CB6880_redo III 4447642 1 A C 60 1.00 63 8 2 4 6 @CCcc,. point 0 nongenic,nongenic -3261 upstream,1035 into {C28A5.5},{C28A5.4} 2573 CB6880_redo III 4484031 1 T C 66 1.00 63 62 1 4 5 @CCcc. point 0 nongenic,nongenic -5292 upstream,-6480 upstream {C07G2.1a.1},{F56F3.6.1} 2575 CB6880_redo III 4530457 1 A C 49 1.00 63 0 0 6 6 @ccCCCc point 0 nongenic 6499 into {F25F2.2} 2576 CB6880_redo III 4530458 1 C T 35 1.00 63 0 0 4 4 @TTTt point 0 nongenic 6498 into {F25F2.2} 2579 CB6880_redo III 4539050 1 G C 3 1.00 63 0 2 5 7 @CC,CC.c point 0 nongenic,nongenic 1540 into,1554 into {M88.1.2},{M88.1.1} 2581 CB6880_redo III 4605000 1 T A 79 1.00 63 62 3 6 9 @...aaaAAA point 0 nongenic,nongenic -11613 upstream,7302 into {F10F2.3},{F10F2.1} 2583 CB6880_redo III 4614341 1 T C 101 1.00 63 26 0 4 4 @ccCc point 0 nongenic,nongenic -2039 upstream,-2272 upstream {F10F2.1},{F10F2.3} 7237 CB6880_redo III 4640495 0 X X -1000 -999.99 -1000 -1000 3 1 4 @...GGgg indel 0 inframe none {F10F2.5} 7239 CB6880_redo III 4708950 2 X X -1000 -999.99 -1000 -1000 9 -6 3 @.,,,..,., indel -2 SNP none {uCE3-874} 2590 CB6880_redo III 4712952 1 C G 255 1.00 63 62 0 35 35 @gggGgggggggggggggggGGgGgggggGgGgggg point 0 missense,SNP TGG->TGC[Trp->Cys],none {T04A8.15},{haw43017,uCE3-875} 2591 CB6880_redo III 4761634 1 G A 255 1.00 63 62 0 33 33 @AAaAaaAaaaAAaAaAaAAaAaaaaAAaaaaAa point 0 SNP none {haw43024} 2592 CB6880_redo III 4845216 1 A T 255 1.00 63 62 0 36 36 @ttttTTtTttTtTTttttTttTTttTtTTTTtTTtt point 0 missense,SNP AAT->ATT[Asn->Ile],none {F26A1.2},{haw43039} 2593 CB6880_redo III 4962073 1 T A 130 1.00 63 30 0 5 5 @aAaaA point 0 nongenic,nongenic,nongenic,nongenic -3548 upstream,-397 upstream,298 into,929 into {C27F2.2a},{C27F2.5.2},{C27F2.9},{C27F2.5.1} 2598 CB6880_redo III 4983226 1 G A 130 1.00 63 62 1 7 8 @,AAaaAAa point 0 SNP none {haw43061} 2599 CB6880_redo III 4983227 1 A G 146 1.00 63 62 1 8 9 @,GGggGGgg point 0 SNP none {haw43062} 2600 CB6880_redo III 5030205 1 G T 9 1.00 63 62 3 5 8 @.,,TTtTT point 0 nongenic,nongenic -686 upstream,607 downstream {R144.1},{R144.2a} 2601 CB6880_redo III 5030564 1 T G 174 7.25 63 62 0 13 13 @ggggggggggggg point 0 nongenic,nongenic -327 upstream,966 downstream {R144.1},{R144.2a} 2602 CB6880_redo III 5066885 1 C G 42 1.00 63 28 1 3 4 @ggG. point 0 nongenic,nongenic -2143 upstream,1801 into {C45G9.2},{C45G9.11} 2605 CB6880_redo III 5105426 1 A C 87 1.00 63 54 3 7 10 @CCcCCcC... point 0 nongenic,nongenic,nongenic -1859 upstream,-20176 upstream,1488 into {F54D8.1.1},{F54D8.4},{F54D8.6} 2606 CB6880_redo III 5105427 1 C A 54 1.00 63 62 3 7 10 @AaAAaAa... point 0 nongenic,nongenic,nongenic -1858 upstream,-20177 upstream,1487 into {F54D8.1.1},{F54D8.4},{F54D8.6} 2607 CB6880_redo III 5128750 1 G A 146 1.00 63 62 8 23 31 @aaAa,a,A,A.Aaa,,aAaA,A.aAaaAaAa point 0 nongenic,nongenic 1752 into,1882 into {F21H11.2b},{F21H11.2a} 2633 CB6880_redo III 5467690 1 G T 22 1.00 63 54 2 2 4 @,.Tt point 0 three_prime_UTR none {F48E8.2} 7254 CB6880_redo III 5471937 0 X X -1000 -999.99 -1000 -1000 1 2 3 @,cc indel 0 nongenic -2498 upstream {F48E8.1a,F48E8.1b,F48E8.1c} 7256 CB6880_redo III 5583032 0 X X -1000 -999.99 -1000 -1000 2 0 2 @,,CC indel 2 nongenic,nongenic -57 upstream,-666 upstream {F56D2.4},{F56D2.8} 2637 CB6880_redo III 5583034 1 A G 31 1.00 63 6 0 4 4 @GGGG point 0 nongenic,nongenic -54 upstream,-668 upstream {F56D2.4},{F56D2.8} 7259 CB6880_redo III 5695323 1 X X -1000 -999.99 -1000 -1000 12 -1 11 @,,,G.,,,,,,.. indel -1 SNP none {uCE3-925} 2639 CB6880_redo III 5699104 1 G A 30 1.00 63 42 2 4 6 @AAAA.. point 0 nongenic,nongenic,nongenic -1144 upstream,586 into,720 into {B0336.8},{B0336.4a},{B0336.4b} 7261 CB6880_redo III 5706403 4 X X -1000 -999.99 -1000 -1000 4 -2 2 @,,.. indel -4 SNP none {uCE3-927} 2640 CB6880_redo III 5722045 1 A C 45 1.00 63 0 0 4 4 @CCCc point 0 nongenic -753 upstream {B0336.1} 2642 CB6880_redo III 5758267 1 G A 55 1.00 63 62 10 14 24 @.,aaAaa.,,aaa,AA.A.aaA,. point 0 nongenic,nongenic -9564 upstream,2780 into {B0244.11},{B0244.2} 2643 CB6880_redo III 5765140 1 C T 13 1.00 63 62 5 7 12 @ttTtTtt.,,.. point 0 nongenic,nongenic -2691 upstream,625 into {B0244.11},{B0244.2} 2644 CB6880_redo III 5814252 1 T C 255 1.00 63 62 0 21 21 @CcccCccccCccccccCcCcC point 0 SNP none {haw43460} 7265 CB6880_redo III 5814708 0 X X -1000 -999.99 -1000 -1000 1 13 14 @,ttttttt indel 2 nongenic -288 upstream {R12B2.7} 2647 CB6880_redo III 5937104 1 T C 12 1.00 63 62 4 4 8 @...,cccC point 0 nongenic,nongenic -3087 upstream,-35 upstream {F25B5.4a.2},{EGAP1.1} 2648 CB6880_redo III 5953899 1 A G 190 1.00 63 62 0 11 11 @GggGgGgGGGg point 0 missense TCT->CCT[Ser->Pro] {F25B5.7a,F25B5.7c} 2649 CB6880_redo III 5953900 1 T A 180 1.00 63 62 0 9 9 @aAaAaAAAa point 0 missense AAA->AAT[Lys->Asn] {F25B5.7a,F25B5.7c} 2650 CB6880_redo III 5953904 1 G T 161 1.00 63 62 0 7 7 @TtTTTtt point 0 missense CCA->CAA[Pro->Gln] {F25B5.7a,F25B5.7c} 7268 CB6880_redo III 5958295 0 X X -1000 -999.99 -1000 -1000 4 -1 3 @,,,,cc indel 0 nongenic,nongenic,nongenic,nongenic -102 upstream,-104 upstream,-429 upstream,-948 upstream {F25B5.7d},{F25B5.7b,F25B5.7c},{F25B5.2.1},{F25B5.2.2} 2651 CB6880_redo III 5958296 1 G C 5 1.00 63 0 1 5 6 @CCCc.c point 0 nongenic,nongenic,nongenic,nongenic -103 upstream,-105 upstream,-427 upstream,-946 upstream {F25B5.7d},{F25B5.7b,F25B5.7c},{F25B5.2.1},{F25B5.2.2} 2652 CB6880_redo III 5962999 1 C T 255 1.00 63 62 0 15 15 @TTTtTTttTtttttt point 0 SNP none {haw43492} 2653 CB6880_redo III 5987894 1 T G 68 1.00 63 4 1 4 5 @GGgg, point 0 nongenic -3931 upstream {T04C9.2} 2654 CB6880_redo III 5987895 1 G T 5 1.00 63 62 3 4 7 @TTtt,,. point 0 nongenic -3930 upstream {T04C9.2} 2656 CB6880_redo III 6033560 1 T G 18 1.00 63 24 3 4 7 @,,,gGgg point 0 nongenic,nongenic,nongenic -3030 upstream,191 downstream,872 into {ZK328.6},{ZK328.7b},{ZK328.7a} 2657 CB6880_redo III 6033561 1 G C 24 1.00 63 18 3 5 8 @,,,cCccc point 0 nongenic,nongenic,nongenic -3031 upstream,190 downstream,873 into {ZK328.6},{ZK328.7b},{ZK328.7a} 2659 CB6880_redo III 6041790 1 G A 162 1.00 63 62 12 36 48 @aaAaA,...aaAaaa.AaAA..AaaaaAaA,,.AAaAaa.,AaaaaaA point 0 missense TGT->TAT[Cys->Tyr] {F40H6.2} 2662 CB6880_redo III 6193202 1 G C 4 1.00 63 18 4 5 9 @ccCc,,t.. point 0 nongenic 1078 into {C23G10.6} 2663 CB6880_redo III 6229465 1 C T 255 1.00 63 62 0 25 25 @TTTTTtttTTtttTTtttttTttTt point 0 SNP none {haw43535} 2664 CB6880_redo III 6231877 1 C T 255 1.00 63 62 0 42 42 @ttTTTtTTttttTtttTTTtTTTTTtTTtTtttTtTttTttT point 0 SNP none {haw43536} 2665 CB6880_redo III 6273046 1 G A 255 1.00 63 62 1 20 21 @AAaAAaaaAaaAAaA.aAAAA point 0 nongenic,nongenic -56 upstream,143 downstream {C18F10.2},{C18F10.9} 7276 CB6880_redo III 6280051 0 X X -1000 -999.99 -1000 -1000 7 -1 6 @.,,..,.CCCcCc indel 0 nongenic,nongenic,nongenic -1750 upstream,-276 upstream,-324 upstream {C18F10.7a.1},{F47D12.4a.1,F47D12.4a.2},{F47D12.4a.3} 2668 CB6880_redo III 6304029 1 T C 39 1.00 63 62 2 4 6 @cCcC., point 0 nongenic,nongenic -5291 upstream,-866 upstream {F47D12.1a,F47D12.1b,F47D12.1c,F47D12.1d},{F47D12.9a.1} 7279 CB6880_redo III 6305031 4 X X -1000 -999.99 -1000 -1000 8 -6 2 @,,,,,,.. indel -4 SNP none {uCE3-950} 2669 CB6880_redo III 6324042 1 C A 80 1.00 63 62 5 9 14 @AaaaAAaAA,..,. point 0 nongenic,nongenic,nongenic -2113 upstream,-7631 upstream,137 into {F47D12.10},{C56G2.4.1},{C56G2.5} 2670 CB6880_redo III 6331622 1 A C 39 1.00 63 34 1 3 4 @cCC, point 0 nongenic,nongenic,nongenic -51 upstream,-53 upstream,-7443 upstream {C56G2.4.1},{C56G2.4.3},{C56G2.5} 2671 CB6880_redo III 6331623 1 T A 34 1.00 63 38 1 3 4 @aAA, point 0 nongenic,nongenic,nongenic -50 upstream,-52 upstream,-7444 upstream {C56G2.4.1},{C56G2.4.3},{C56G2.5} 2673 CB6880_redo III 6363161 1 T C 19 1.00 63 62 2 4 6 @,.CccC point 0 five_prime_UTR none {C56G2.1b} 2674 CB6880_redo III 6371224 1 A G 255 1.00 63 62 0 61 61 @GgGGGggggggggGgGgGggGggGGGgGGGgGggGGGgGGGGgGgGGgggGgGGgGGggGg point 0 missense,SNP GAT->GGT[Asp->Gly],none {C16A3.8},{haw43559} 7284 CB6880_redo III 6468408 0 X X -1000 -999.99 -1000 -1000 4 1 5 @,..,gGgg indel 0 nongenic,nongenic -1 upstream,-1085 downstream {T26A5.2b},{T26A5.2a} 2675 CB6880_redo III 6545994 1 G A 86 1.00 63 62 9 16 25 @..A,AA,A,AAAA,aA,,AaAa,aa point 0 premature_stop CAA->TAA[Gln->stop] {C09E7.6} 2680 CB6880_redo III 6619216 1 C T 255 1.00 63 62 0 30 30 @TTTttTTTTttTTtTtTTttttTTTTtTTt point 0 missense,SNP CTC->TTC[Leu->Phe],none {Y40D12A.1a},{haw43601} 2682 CB6880_redo III 6626308 1 G C 24 2.62 63 16 0 5 5 @CccCa point 0 nongenic,nongenic -1396 upstream,-2636 upstream {C13B9.3},{C13B9.1.1,C13B9.1.2} 2683 CB6880_redo III 6626309 1 C A 18 3.00 13 16 0 4 4 @aaAg point 0 nongenic,nongenic -1397 upstream,-2635 upstream {C13B9.3},{C13B9.1.1,C13B9.1.2} 2684 CB6880_redo III 6626314 1 C A 32 2.50 26 16 0 6 6 @aAaaaa point 0 nongenic,nongenic -1402 upstream,-2630 upstream {C13B9.3},{C13B9.1.1,C13B9.1.2} 2685 CB6880_redo III 6626315 1 G C 33 2.44 26 16 0 7 7 @cCccccc point 0 nongenic,nongenic -1403 upstream,-2629 upstream {C13B9.3},{C13B9.1.1,C13B9.1.2} 2692 CB6880_redo III 6701834 1 A C 50 1.00 63 62 4 6 10 @,,,.cccccc point 0 nongenic,nongenic,nongenic -36520 upstream,1886 into,2080 into {M01G4.1},{F37A4.7a.1,F37A4.7a.2,F37A4.7b,F37A4.7c},{F37A4.7d} 2693 CB6880_redo III 6710989 1 A C 135 1.00 63 62 0 6 6 @cCcCcC point 0 nongenic,nongenic -891 upstream,-994 upstream {F37A4.5},{F37A4.8} 2699 CB6880_redo III 6923579 1 G A 247 1.00 63 62 0 16 16 @AAaAAAAAAAAAAaAA point 0 SNP none {haw43734} 7290 CB6880_redo III 6925969 0 X X -1000 -999.99 -1000 -1000 2 -1 1 @,,TTtT indel 0 nongenic,nongenic,nongenic,nongenic -13551 upstream,-1656 downstream,-1930 downstream,-4005 upstream {T07E3.6a,T07E3.6b.1,T07E3.6b.2},{F57B9.7b},{F57B9.7a},{F57B9.6a.1} 2704 CB6880_redo III 6990359 1 T G 46 1.00 63 34 2 4 6 @Gggg., point 0 nongenic,nongenic,nongenic,splice_donor -6056 upstream,180 into,254 into,none {C06E8.3a},{C06E8.3c},{C06E8.3b},{C06E8.3b} 7295 CB6880_redo III 7013024 0 X X -1000 -999.99 -1000 -1000 8 2 10 @..,,.,..Aa indel 0 nongenic,nongenic -3944 downstream,-7726 upstream {F11H8.2},{C06E8.5} 2706 CB6880_redo III 7013025 1 G C 44 1.00 63 36 2 8 10 @ccCCcCcc,. point 0 nongenic,nongenic -7727 upstream,3946 into {C06E8.5},{F11H8.2} 2707 CB6880_redo III 7013026 1 C A 36 1.00 63 44 2 6 8 @AAaAaa,. point 0 nongenic,nongenic -7728 upstream,3947 into {C06E8.5},{F11H8.2} 2708 CB6880_redo III 7013479 1 G A 255 1.00 63 62 0 38 38 @aaaAaAAAaaAAaAaaAAaAAAaAaaaaAAaAAaAaAA point 0 nongenic,nongenic -8181 upstream,4400 into {C06E8.5},{F11H8.2} 2709 CB6880_redo III 7021096 1 T G 55 1.00 63 62 4 7 11 @gggGGGg.,,, point 0 nongenic,nongenic,nongenic -3 upstream,-561 upstream,-721 upstream {F11H8.1.1},{F11H8.3},{F11H8.1.2} 2710 CB6880_redo III 7028423 1 T A 255 1.00 63 62 0 18 18 @aaAAAaaAaAaAAAaAAA point 0 missense,SNP ACA->TCA[Thr->Ser],none {F11H8.4a,F11H8.4b},{haw43822} 2714 CB6880_redo III 7028557 1 G A 36 1.00 63 0 0 4 4 @AaAa point 0 nongenic 573 into {F11H8.4a,F11H8.4b} 2715 CB6880_redo III 7028623 1 A T 255 1.00 63 62 0 31 31 @ttTTTTtTtTtTTtttTTTTTTtTTtTTTTt point 0 SNP none {haw43823} 2716 CB6880_redo III 7028658 1 C T 246 1.00 63 62 0 17 17 @TTtTTTTtTTTTTTTTT point 0 missense,SNP GAA->AAA[Glu->Lys],none {F11H8.4a,F11H8.4b},{haw43824} 2717 CB6880_redo III 7030413 1 G A 3 1.00 63 2 2 2 4 @Aa,. point 0 nongenic -1283 upstream {F11H8.4a,F11H8.4b} 2719 CB6880_redo III 7033325 1 T G 255 1.00 63 62 0 26 26 @ggGgGgGGGgGGGGgGGGGGGggGgg point 0 nongenic -4195 upstream {F11H8.4a,F11H8.4b} 2720 CB6880_redo III 7047284 1 A C 48 1.00 63 62 2 6 8 @cccCcc., point 0 nongenic,nongenic -1628 upstream,-9223 upstream {R01H2.7},{R01H2.2} 2725 CB6880_redo III 7075888 1 C G 88 1.00 63 6 1 4 5 @.gGgG point 0 silent CCG->CCC[Pro->Pro] {ZK418.6} 2726 CB6880_redo III 7075890 1 G C 110 1.00 63 62 1 4 5 @.cCcC point 0 missense CCG->GCG[Pro->Ala] {ZK418.6} 7303 CB6880_redo III 7079762 0 X X -1000 -999.99 -1000 -1000 2 2 4 @.,CC indel 0 nongenic,nongenic -756 downstream,-997 upstream {ZK418.7},{ZK418.6} 2727 CB6880_redo III 7079763 1 T C 17 1.00 63 28 2 2 4 @cC,, point 0 nongenic,nongenic -998 upstream,758 into {ZK418.6},{ZK418.7} 2728 CB6880_redo III 7118005 1 G A 255 1.00 63 62 0 36 36 @AAaaaAAAAAAAAaAaaAAAaAAaAaAaAaaAAAaA point 0 SNP none {haw43886} 2729 CB6880_redo III 7214104 1 A C 255 1.00 63 62 0 46 46 @CcCCCCCCcCcCCccCCCccCccCCccCCcCCCCccCCCCCcCCcC point 0 missense AGC->CGC[Ser->Arg] {R151.2a,R151.2b.1,R151.2b.2,R151.2b.3,R151.2b.4,R151.2b.5,R151.2c,R151.2d.1,R151.2d.2} 2743 CB6880_redo III 7236657 1 C A 42 2.25 63 24 0 4 4 @aAAA point 0 nongenic,nongenic -2297 upstream,-2526 upstream {T20H4.3a,T20H4.3b},{T20H4.5} 7304 CB6880_redo III 7238031 2 X X -1000 -999.99 -1000 -1000 5 -2 3 @,,,,.ggg indel -2 nongenic,nongenic -3900 upstream,-922 upstream {T20H4.5},{T20H4.3a,T20H4.3b} 2745 CB6880_redo III 7238033 1 C G 36 5.88 63 18 3 4 7 @GGG.g.. point 0 nongenic,nongenic -3902 upstream,-921 upstream {T20H4.5},{T20H4.3a,T20H4.3b} 2747 CB6880_redo III 7272186 1 A G 63 1.00 63 38 5 7 12 @GgGGggG..,,, point 0 SNP none {uCE3-1001} 2748 CB6880_redo III 7272187 1 C A 38 1.00 63 62 5 7 12 @AaAAaaA..,,, point 0 nongenic,nongenic -1116 upstream,3136 into {B0361.5a},{B0361.5b} 2749 CB6880_redo III 7324001 1 G A 179 1.00 63 62 8 25 33 @.aaA,aAAa.AaaaA.A.aa,AAaAaAAaaa,, point 0 nongenic,nongenic -4520 upstream,860 downstream {F56C9.8},{F56C9.11} 2756 CB6880_redo III 7364394 1 A C 3 2.00 0 24 4 20 24 @cc,c.CCcC,ccC,CCccCCcCCc point 0 nongenic,nongenic -1005 upstream,-136 upstream {F08F8.5},{F08F8.1} 2780 CB6880_redo III 7446595 1 C A 14 9.00 0 2 0 4 4 @aAaa point 0 nongenic -7340 upstream {Y69F12A.2a.1} 7306 CB6880_redo III 7452435 0 X X -1000 -999.99 -1000 -1000 3 -1 2 @,G,,t indel 2 nongenic -1501 upstream {Y69F12A.2a.1} 2800 CB6880_redo III 7452436 1 T G 15 8.62 15 0 0 5 5 @GGGGg point 0 nongenic -1499 upstream {Y69F12A.2a.1} 7307 CB6880_redo III 7494921 0 X X -1000 -999.99 -1000 -1000 6 -2 4 @,,,,..CcCCC indel 0 nongenic,nongenic -5921 upstream,322 downstream {K07D8.1},{C07H6.5.1} 7308 CB6880_redo III 7528175 0 X X -1000 -999.99 -1000 -1000 5 -1 4 @,,...TTtT indel 0 nongenic,nongenic 417 downstream,420 downstream {C07H6.7.2},{C07H6.7.1} 2804 CB6880_redo III 7558821 1 C G 27 1.00 63 18 1 4 5 @gGGg. point 0 nongenic,nongenic -3272 upstream,689 downstream {R13A5.4},{R13A5.5} 2805 CB6880_redo III 7558822 1 G C 18 1.00 63 26 1 3 4 @CCc. point 0 nongenic,nongenic -3271 upstream,690 downstream {R13A5.4},{R13A5.5} 2807 CB6880_redo III 7579125 1 G A 218 1.00 63 62 6 29 35 @AAAAaaaA,.AAaAAaaAAAA..aaaAaaAa.,aA point 0 nongenic 209 into {R13A5.9} 2808 CB6880_redo III 7587271 1 G T 125 1.00 63 62 0 5 5 @Ttttt point 0 nongenic,nongenic,nongenic,nongenic -4369 upstream,2661 into,3011 into,3144 into {R13A5.10},{R13A5.1a.2,R13A5.1b,R13A5.1d},{R13A5.1a.1},{R13A5.1c} 2809 CB6880_redo III 7587555 1 T A 36 1.00 63 40 1 3 4 @,AAA point 0 nongenic,nongenic,nongenic,nongenic -4653 upstream,2945 into,3295 into,3428 into {R13A5.10},{R13A5.1a.2,R13A5.1b,R13A5.1d},{R13A5.1a.1},{R13A5.1c} 2810 CB6880_redo III 7587556 1 G T 41 1.00 63 36 1 4 5 @,TTTT point 0 nongenic,nongenic,nongenic,nongenic -4654 upstream,2946 into,3296 into,3429 into {R13A5.10},{R13A5.1a.2,R13A5.1b,R13A5.1d},{R13A5.1a.1},{R13A5.1c} 2811 CB6880_redo III 7587842 1 C G 35 1.00 63 24 0 4 4 @gGgg point 0 nongenic,nongenic,nongenic,nongenic,nongenic -4940 upstream,3099 into,3232 into,3582 into,3621 into {R13A5.10},{R13A5.1a.2},{R13A5.1b,R13A5.1d},{R13A5.1a.1},{R13A5.1c} 2812 CB6880_redo III 7588318 1 A G 255 1.00 63 62 0 43 43 @ggggGGGGGggGGGgGGGGGGgggGgGGgGgggGGggGGGggg point 0 SNP none {haw44283} 2831 CB6880_redo III 7643354 1 T A 255 1.00 63 62 0 19 19 @aAaAaaAaaAaaaAaaaAa point 0 SNP none {haw44321} 2832 CB6880_redo III 7643508 1 T G 44 1.00 63 36 1 4 5 @gggg. point 0 nongenic,nongenic -477 upstream,-479 upstream {ZK783.2.1},{ZK783.2.2} 2833 CB6880_redo III 7643509 1 G T 37 1.00 63 44 1 3 4 @ttt. point 0 nongenic,nongenic -478 upstream,-480 upstream {ZK783.2.1},{ZK783.2.2} 2837 CB6880_redo III 7646017 1 T C 44 2.00 63 62 1 6 7 @ccCCCC, point 0 nongenic,nongenic -2986 upstream,85 downstream {ZK783.2.1},{ZK783.5} 2838 CB6880_redo III 7708718 1 G T 181 5.88 63 62 0 16 16 @TttttTTTtttTTttt point 0 nongenic,nongenic -3660 upstream,682 into {C03B8.3},{C03B8.4} 7314 CB6880_redo III 7712933 1 X X -1000 -999.99 -1000 -1000 6 -2 4 @,...,. indel -1 SNP none {uCE3-1027} 7315 CB6880_redo III 7822734 1 X X -1000 -999.99 -1000 -1000 4 -2 2 @,,.. indel -1 SNP none {uCE3-1041} 2841 CB6880_redo III 7874571 1 C A 89 1.00 63 62 8 10 18 @aaAaAaaAaA,,...... point 0 nongenic 865 into {C02C2.1} 2844 CB6880_redo III 7924181 1 C T 255 1.00 63 62 0 17 17 @tTttTTttttTTttttT point 0 SNP none {haw44542} 2845 CB6880_redo III 7958663 1 C T 255 1.00 63 62 0 44 44 @tTTtTtTTtttTTTTTTtTtttTttTTttttttTtTTtTTtTTT point 0 SNP none {haw44573} 7318 CB6880_redo III 8053797 0 X X -1000 -999.99 -1000 -1000 4 -1 3 @.,..TT indel 0 nongenic,nongenic -13419 upstream,-2715 upstream {K12H4.1},{K12H4.7b} 2848 CB6880_redo III 8053798 1 C T 8 1.00 63 62 2 3 5 @Ttt,, point 0 nongenic,nongenic -13417 upstream,-2716 upstream {K12H4.1},{K12H4.7b} 2849 CB6880_redo III 8064604 1 C T 255 1.00 63 62 0 31 31 @tttTttTTttTtTTTTTTtTtTTTtTTtTTt point 0 SNP none {haw44619,snp_K12H4[1]} 2851 CB6880_redo III 8124694 1 G A 255 1.00 63 62 0 32 32 @aAaaAAaAaaaAaaaaaaAaAaAaaaaAaaAa point 0 SNP none {haw44646} 2852 CB6880_redo III 8130396 1 G A 255 1.00 63 62 0 45 45 @AaAAaaAaAaaaaaaaAaaAaaAAAaaaAaAAAaAaaAaaaAAAa point 0 SNP none {haw44651} 2855 CB6880_redo III 8154517 1 T A 255 1.00 63 62 0 29 29 @aAAaAAAaAaaaAAaAAAaaAAaAAaAaA point 0 SNP none {haw44660} 2856 CB6880_redo III 8166012 1 G A 219 1.00 63 62 6 30 36 @AAA..aAAAA,aaAa,AAAAAAaaaa.aAAAAA,AA point 0 missense CGT->CAT[Arg->His] {C50C3.6} 2857 CB6880_redo III 8181534 1 G C 10 1.00 63 0 2 3 5 @,,CCc point 0 nongenic -322 upstream {C50C3.2} 2866 CB6880_redo III 8191071 1 T G 92 1.00 63 10 0 4 4 @gggg point 0 nongenic -666 upstream {C50C3.1} 2867 CB6880_redo III 8194456 1 C G 87 1.00 63 62 2 5 7 @gggga.. point 0 nongenic,nongenic,nongenic,nongenic -8553 upstream,377 into,682 into,689 downstream {C30A5.5},{C50C3.9b},{C50C3.9a},{C50C3.1} 2868 CB6880_redo III 8194457 1 A C 86 1.00 63 60 3 4 7 @cccc... point 0 nongenic,nongenic,nongenic,nongenic -8552 upstream,376 into,683 into,690 downstream {C30A5.5},{C50C3.9b},{C50C3.9a},{C50C3.1} 2870 CB6880_redo III 8309461 1 T A 14 1.00 63 62 2 3 5 @,.AAA point 0 nongenic,nongenic -1461 upstream,133 into {F10E9.3.1},{F10E9.4} 7325 CB6880_redo III 8344880 0 X X -1000 -999.99 -1000 -1000 5 -4 1 @CCC....C, indel 5 nongenic,nongenic -625 upstream,737 downstream {ZC262.7},{ZC262.10} 2871 CB6880_redo III 8344890 1 C G 3 2.00 0 2 1 7 8 @G,gggaga point 0 nongenic,nongenic -635 upstream,726 downstream {ZC262.7},{ZC262.10} 2872 CB6880_redo III 8424571 1 T C 173 8.38 63 62 0 18 18 @CCCCCCCCCCCgCCCccc point 0 nongenic -1683 upstream {ZK1236.2} 2873 CB6880_redo III 8426446 1 G A 227 1.00 63 62 5 23 28 @aAaAAaA.AAAaaa,A.aaAA,aAa,aa point 0 nongenic,nongenic -2807 upstream,192 into {ZK1236.1},{ZK1236.2} 2875 CB6880_redo III 8433789 1 T A 13 2.00 63 12 0 5 5 @AAAAA point 0 nongenic -479 upstream {ZK1236.9} 2883 CB6880_redo III 8438265 1 G C 12 8.25 63 8 1 3 4 @CcC, point 0 three_prime_UTR none {ZK1236.6.1} 2884 CB6880_redo III 8438266 1 T G 9 1.75 63 12 1 3 4 @gG,a point 0 three_prime_UTR none {ZK1236.6.1} 163749 CB6880_redo III 8441903 55 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered,uncovered,uncovered non-exonic, 1563 to 1618 bp into,non-exonic, 1566 to 1621 bp into,non-exonic, 1568 to 1623 bp into {ZK1236.7.2},{ZK1236.7.3},{ZK1236.7.1} 163750 CB6880_redo III 8442010 85 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered,uncovered,uncovered non-exonic, 1426 to 1511 bp into,non-exonic, 1429 to 1514 bp into,non-exonic, 1431 to 1516 bp into {ZK1236.7.2},{ZK1236.7.3},{ZK1236.7.1} 163751 CB6880_redo III 8442212 75 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered,uncovered,uncovered non-exonic, 1234 to 1309 bp into,non-exonic, 1237 to 1312 bp into,non-exonic, 1239 to 1314 bp into {ZK1236.7.2},{ZK1236.7.3},{ZK1236.7.1} 2901 CB6880_redo III 8461758 1 A G 87 1.00 63 14 1 4 5 @.GGGg point 0 nongenic -8834 upstream {F42H10.5} 2902 CB6880_redo III 8461978 1 C A 255 1.00 63 62 0 21 21 @AaAAAaaaAaaAAAAAaAAaA point 0 SNP none {haw44763} 2904 CB6880_redo III 8463888 1 T A 10 4.00 63 42 2 2 4 @aa.. point 0 nongenic -6704 upstream {F42H10.5} 2905 CB6880_redo III 8466855 1 C T 32 1.00 63 32 2 3 5 @Ttt,. point 0 nongenic -3737 upstream {F42H10.5} 2906 CB6880_redo III 8466856 1 G C 32 1.00 63 32 2 3 5 @Ccc,. point 0 nongenic -3736 upstream {F42H10.5} 2907 CB6880_redo III 8472515 1 T C 42 1.00 63 8 1 4 5 @CcCC, point 0 nongenic 1923 into {F42H10.5} 2909 CB6880_redo III 8503007 1 A T 255 1.00 63 62 0 18 18 @tTtTttttTTTTTTtTTt point 0 SNP none {haw44793} 2910 CB6880_redo III 8512793 1 A C 4 1.00 63 4 2 2 4 @cC,. point 0 SNP none {snp_C04D8[5]} 2911 CB6880_redo III 8563841 1 T G 17 1.00 63 60 4 4 8 @,,,,ggGg point 0 nongenic,nongenic -17168 upstream,960 downstream {C06E1.3},{C02D5.1} 2912 CB6880_redo III 8563843 1 G A 60 1.00 63 16 3 5 8 @,,,aaAaA point 0 SNP none {haw44858} 2914 CB6880_redo III 8563931 1 G A 255 1.00 63 62 0 20 20 @aaAaAaaaAaaAAAaAaaAa point 0 SNP none {haw44859} 7336 CB6880_redo III 8574370 0 X X -1000 -999.99 -1000 -1000 3 0 3 @,.,aa indel 0 nongenic -6640 upstream {C06E1.3} 2920 CB6880_redo III 8575624 1 C T 101 1.00 63 38 1 5 6 @,tTtTt point 0 nongenic -5385 upstream {C06E1.3} 2921 CB6880_redo III 8583354 1 C T 75 1.00 63 34 0 4 4 @tttT point 0 three_prime_UTR none {C06E1.3} 2923 CB6880_redo III 8583364 1 A C 25 1.00 63 0 0 4 4 @ccCc point 0 three_prime_UTR none {C06E1.3} 2924 CB6880_redo III 8583365 1 C G 33 1.00 63 0 0 5 5 @ggGgG point 0 three_prime_UTR none {C06E1.3} 2925 CB6880_redo III 8650751 1 C G 31 1.00 63 2 1 3 4 @gGG. point 0 silent CCC->CCG[Pro->Pro] {F22B7.2} 2926 CB6880_redo III 8684179 1 T A 255 1.00 63 62 0 20 20 @AAAAaAaaAaAAaaaAaaaa point 0 SNP none {haw44984} 2927 CB6880_redo III 8684208 1 C T 255 1.00 63 62 0 19 19 @TtttttTttTTtTtttttt point 0 SNP none {haw44985} 2929 CB6880_redo III 8693607 1 G C 255 1.00 63 62 0 16 16 @cCCcccCcccCccCCc point 0 missense TGT->TCT[Cys->Ser] {B0303.7a} 2930 CB6880_redo III 8693611 1 G A 255 1.00 63 62 0 17 17 @AAaaaAaaaAaaAAaaa point 0 silent GGG->GGA[Gly->Gly] {B0303.7a} 163752 CB6880_redo III 8693684 54 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered non-exonic, 140 to 194 bp into {B0303.7a} 2933 CB6880_redo III 8693773 1 A T 255 1.00 63 62 0 15 15 @ttTTTTTtTTtTttt point 0 SNP none {haw44992} 2934 CB6880_redo III 8701737 1 C T 255 1.00 63 62 0 27 27 @TtttTttTTtttttttttTtTtTtTTT point 0 silent,SNP TCC->TCT[Ser->Ser],none {B0303.9},{haw44997} 2935 CB6880_redo III 8704000 1 T A 255 1.00 63 62 0 29 29 @AaaaaaAAaaAAaaAaaaAaaAaAaaaaa point 0 SNP none {haw44999} 2936 CB6880_redo III 8705714 1 A T 7 1.00 63 0 2 3 5 @T,,tT point 0 nongenic,nongenic 2502 into,540 into {B0303.11},{B0303.16} 2939 CB6880_redo III 8710964 1 T A 255 1.00 63 62 0 15 15 @AaAAaAaAAaaaAAa point 0 SNP none {haw45004} 2940 CB6880_redo III 8711826 1 C T 255 1.00 63 62 0 19 19 @ttTTttTTttTtttTTTtT point 0 SNP none {haw45005} 2941 CB6880_redo III 8711855 1 C A 53 1.00 63 62 1 3 4 @,AAa point 0 nongenic -1836 upstream {B0303.11} 2942 CB6880_redo III 8712013 1 G A 228 1.31 63 62 0 10 10 @AaAAAaAaaa point 0 SNP none {haw45006} 2943 CB6880_redo III 8713028 1 A T 52 1.00 63 62 2 5 7 @Ttttt,. point 0 nongenic,nongenic -3009 upstream,866 downstream {B0303.11},{B0303.14} 2944 CB6880_redo III 8713033 1 C T 91 1.00 63 62 1 5 6 @.TttTT point 0 nongenic,nongenic -3014 upstream,861 downstream {B0303.11},{B0303.14} 2945 CB6880_redo III 8733582 1 A T 255 1.00 63 62 0 35 35 @TttTTTTTtTTTTTtttttTtTtTTTtTTtttttt point 0 SNP none {haw45014,uCE3-1086} 2946 CB6880_redo III 8733611 1 A T 255 1.00 63 62 0 35 35 @TtTTTtTTttttttTTtTtttTTtttTTTTtttTt point 0 SNP none {haw45015,uCE3-1087} 2948 CB6880_redo III 8740761 1 C T 255 1.00 63 62 0 38 38 @tTTttTTTtTtTtttTTTTTttTTTTTtttTTtTTTtT point 0 SNP none {haw45017} 2949 CB6880_redo III 8741583 1 G C 69 1.00 63 24 1 5 6 @CcCCC, point 0 nongenic,nongenic,nongenic -262 upstream,-264 upstream,330 downstream {ZK370.5.1},{ZK370.5.2},{ZK370.6} 2950 CB6880_redo III 8741584 1 C G 68 1.00 63 12 1 5 6 @GgGGG, point 0 nongenic,nongenic,nongenic -263 upstream,-265 upstream,329 downstream {ZK370.5.1},{ZK370.5.2},{ZK370.6} 2951 CB6880_redo III 8742380 1 G A 255 1.00 63 62 0 31 31 @aaaaAaaaAaAAAaAAaAAAAAaAAAAAaAA point 0 SNP,three_prime_UTR none,none {haw45020},{ZK370.6} 2952 CB6880_redo III 8744441 1 C T 255 1.00 63 62 0 24 24 @tTTtTttTtttttTtTtTTTTTtt point 0 SNP none {haw45021} 2953 CB6880_redo III 8752722 1 C T 255 1.00 63 62 0 24 24 @TttttTttTTTTTTtttTTtTTTT point 0 SNP none {haw45024} 2954 CB6880_redo III 8758065 1 T C 255 1.00 63 62 0 29 29 @cCccCCccccCcCccccCCCCCccCCCCC point 0 SNP none {haw45027} 2955 CB6880_redo III 8810252 1 T A 14 1.00 63 2 3 5 8 @.aa.aa.a point 0 nongenic,nongenic -1016 upstream,-8555 upstream {F54F2.8.1},{F54F2.1} 2956 CB6880_redo III 8810253 1 T A 3 1.00 63 14 3 3 6 @a.aa.. point 0 nongenic,nongenic -1017 upstream,-8554 upstream {F54F2.8.1},{F54F2.1} 2971 CB6880_redo III 8890775 1 G T 79 1.00 63 0 0 4 4 @TtTt point 0 SNP none {haw45052} 2975 CB6880_redo III 8905206 1 C A 17 1.00 63 48 0 4 4 @TAaa point 0 nongenic,nongenic,nongenic -1166 upstream,-317 upstream,-328 upstream {ZK637.7b.1},{ZK637.8c,ZK637.8e},{ZK637.8a,ZK637.8b,ZK637.8d,ZK637.8f} 7350 CB6880_redo III 8929470 0 X X -1000 -999.99 -1000 -1000 6 -3 3 @,,..,.Ccc indel 0 nongenic,nongenic -2594 upstream,-3032 upstream {ZK643.1},{ZK643.7} 2977 CB6880_redo III 9022413 1 C T 31 0.00 63 0 0 4 4 @tttt point 0 nongenic 131 into {F59B2.14} 2978 CB6880_redo III 9022414 1 G C 31 0.00 63 0 0 4 4 @cccc point 0 nongenic 130 into {F59B2.14} 2980 CB6880_redo III 9025485 1 A T 255 1.00 63 62 0 36 36 @TTTtTTTttTTTttTTtTttttTttTttTtTttTtT point 0 SNP none {haw45122} 2981 CB6880_redo III 9026031 1 C T 21 1.00 63 62 3 5 8 @,..ttTtt point 0 nongenic,nongenic -3487 upstream,923 into {F59B2.14},{F59B2.13} 2982 CB6880_redo III 9066055 1 C G 255 1.00 63 62 0 26 26 @GgGGGGGGgGgGGgGGggGgGGGgGg point 0 nongenic 5616 into {R107.8} 2983 CB6880_redo III 9066056 1 G C 255 1.00 63 62 0 26 26 @CcCCCCCCcCcCCcCCccCcCCCcCc point 0 nongenic 5615 into {R107.8} 2984 CB6880_redo III 9101165 1 G T 67 0.00 63 42 0 14 14 @tttttttttttttt point 0 missense CAA->AAA[Gln->Lys] {ZK507.1} 2985 CB6880_redo III 9101166 1 C T 42 0.00 63 60 0 15 15 @ttttttttttttttg point 0 non_start ATG->ATA[Met->Ile] {ZK507.1} 2986 CB6880_redo III 9101190 1 T A 52 2.00 63 50 1 6 7 @a.aaaaa point 0 nongenic,nongenic -21 upstream,-86 upstream {ZK507.1},{ZK507.3} 2987 CB6880_redo III 9101199 1 G A 54 2.00 63 62 1 6 7 @a.aaaaa point 0 nongenic,nongenic -30 upstream,-77 upstream {ZK507.1},{ZK507.3} 2989 CB6880_redo III 9150072 1 A G 20 1.00 63 22 2 5 7 @.,GGGGg point 0 nongenic,nongenic -4952 upstream,2760 into {F54G8.1},{F54G8.4} 2990 CB6880_redo III 9150073 1 G A 23 1.00 63 20 2 5 7 @.,AAAAa point 0 nongenic,nongenic -4951 upstream,2761 into {F54G8.1},{F54G8.4} 7356 CB6880_redo III 9199644 0 X X -1000 -999.99 -1000 -1000 2 0 2 @,,aAAaa indel 0 nongenic,nongenic -460 upstream,209 downstream {ZC84.6},{ZC84.1} 2991 CB6880_redo III 9260713 1 G A 33 1.00 63 6 1 6 7 @aaAaAA. point 0 nongenic,nongenic,nongenic,nongenic -25241 upstream,265 into,609 into,792 downstream {K01B6.1},{M01A8.2a},{M01A8.2b},{M01A8.1} 2992 CB6880_redo III 9260714 1 A T 26 1.00 63 6 1 5 6 @tTtTT. point 0 nongenic,nongenic,nongenic,nongenic -25240 upstream,266 into,610 into,793 downstream {K01B6.1},{M01A8.2a},{M01A8.2b},{M01A8.1} 2993 CB6880_redo III 9263153 1 G A 255 1.00 63 62 0 20 20 @aaAaaaaaAAAAaAAAAAaa point 0 SNP none {haw45230} 2994 CB6880_redo III 9264263 1 G A 255 1.00 63 62 0 32 32 @AAAAAAAAAaAAaAAaAaAaAaaAAaaAaAaa point 0 SNP none {haw45233} 2995 CB6880_redo III 9282275 1 A C 87 1.00 63 56 0 6 6 @CcCcCC point 0 nongenic,nongenic -13306 upstream,-3679 upstream {M01A8.2a,M01A8.2b},{K01B6.1} 2996 CB6880_redo III 9282276 1 G A 73 1.00 63 56 0 4 4 @AaAA point 0 nongenic,nongenic -13307 upstream,-3678 upstream {M01A8.2a,M01A8.2b},{K01B6.1} 2999 CB6880_redo III 9282310 1 G C 96 1.00 63 0 0 5 5 @cCccC point 0 nongenic,nongenic -13341 upstream,-3644 upstream {M01A8.2a,M01A8.2b},{K01B6.1} 3000 CB6880_redo III 9291251 1 G A 16 1.00 63 62 5 7 12 @,....aAaaaAa point 0 nongenic,nongenic -22282 upstream,5282 into {M01A8.2a,M01A8.2b},{K01B6.1} 3001 CB6880_redo III 9298564 1 C T 255 1.00 63 62 0 23 23 @TTTtTtttTTTTttTttTtTttt point 0 SNP none {haw45256} 3002 CB6880_redo III 9341369 1 T C 255 1.00 63 62 0 51 51 @CcCCccCcCcCCCCccCccccCCCCCcCCCCcCCCccCCCCCccCcccccc point 0 missense,SNP AGA->GGA[Arg->Gly],none {K04H4.1a},{haw45266} 3003 CB6880_redo III 9350628 1 C T 255 1.00 63 62 0 19 19 @tTTtttttttttTtttTTT point 0 missense,SNP GGA->GAA[Gly->Glu],none {K04H4.2c.1,K04H4.2c.2},{haw45273} 3004 CB6880_redo III 9350653 1 C T 255 1.00 63 62 0 23 23 @TtttTTTttTtTttTTTtttttt point 0 missense,SNP GAG->AAG[Glu->Lys],none {K04H4.2c.1,K04H4.2c.2},{haw45274} 3005 CB6880_redo III 9350660 1 C T 255 1.00 63 62 0 22 22 @TTttTtTttTTTttttttTtTt point 0 silent,SNP AGG->AGA[Arg->Arg],none {K04H4.2c.1,K04H4.2c.2},{haw45275} 3006 CB6880_redo III 9350783 1 G A 5 1.00 63 62 2 2 4 @.,Aa point 0 nongenic,nongenic,nongenic,nongenic,nongenic,nongenic,nongenic -6433 upstream,-9385 upstream,2696 into,3109 into,3128 into,3130 into,3168 into {K04H4.1a,K04H4.1b},{K04H4.5},{K04H4.2a.3,K04H4.2b},{K04H4.2c.2},{K04H4.2a.1},{K04H4.2c.1},{K04H4.2a.2} 3007 CB6880_redo III 9350786 1 A C 67 1.00 63 4 2 5 7 @.,CcCcc point 0 nongenic,nongenic,nongenic,nongenic,nongenic,nongenic,nongenic -6436 upstream,-9382 upstream,2699 into,3112 into,3131 into,3133 into,3171 into {K04H4.1a,K04H4.1b},{K04H4.5},{K04H4.2a.3,K04H4.2b},{K04H4.2c.2},{K04H4.2a.1},{K04H4.2c.1},{K04H4.2a.2} 3008 CB6880_redo III 9352561 1 C T 255 1.00 63 62 0 48 48 @TTTTttTTTTTTtttTttTttTTttTTTTtttTTTtttTttTtTtTTT point 0 silent,SNP GAG->GAA[Glu->Glu],none {K04H4.2c.1,K04H4.2c.2},{haw45277} 3009 CB6880_redo III 9355598 1 A C 255 1.00 63 62 0 32 32 @CCGcccCCcccCccccccCcCCcccccccCCc point 0 nongenic,nongenic,nongenic -216 upstream,-234 upstream,-4570 upstream {K04H4.2a.1,K04H4.2a.2},{K04H4.2a.3,K04H4.2b,K04H4.2c.1,K04H4.2c.2},{K04H4.5} 3010 CB6880_redo III 9355599 1 C G 255 1.00 63 62 0 32 32 @GGGgggGGgggGggggggGgGGgggggggGGg point 0 nongenic,nongenic,nongenic -217 upstream,-235 upstream,-4569 upstream {K04H4.2a.1,K04H4.2a.2},{K04H4.2a.3,K04H4.2b,K04H4.2c.1,K04H4.2c.2},{K04H4.5} 3012 CB6880_redo III 9361624 1 A G 12 2.19 63 10 0 5 5 @GGGcc point 0 nongenic,nongenic,nongenic -5549 upstream,197 into,392 downstream {K04H4.6a,K04H4.6b},{K04H4.7},{K04H4.5} 3013 CB6880_redo III 9361625 1 G C 25 2.50 63 10 0 4 4 @CCcc point 0 nongenic,nongenic,nongenic -5548 upstream,198 into,393 downstream {K04H4.6a,K04H4.6b},{K04H4.7},{K04H4.5} 3017 CB6880_redo III 9409056 1 T G 179 1.81 63 62 0 11 11 @GGGgGgggggG point 0 nongenic -2513 upstream {T26G10.1} 3018 CB6880_redo III 9409292 1 C G 255 1.81 63 62 0 22 22 @ggggGgggGggggggGGGgggG point 0 nongenic -2749 upstream {T26G10.1} 3019 CB6880_redo III 9411372 1 G A 70 1.50 40 28 0 4 4 @AAAa point 0 nongenic -4829 upstream {T26G10.1} 3020 CB6880_redo III 9411373 1 A C 70 1.50 40 62 0 4 4 @CCCc point 0 nongenic -4830 upstream {T26G10.1} 3021 CB6880_redo III 9417682 1 T A 5 3.44 0 24 1 9 10 @aAAaAaaAA, point 0 nongenic,nongenic -2749 upstream,-4340 upstream {T26G10.4},{T26G10.3} 3022 CB6880_redo III 9417686 1 A T 5 3.44 0 22 2 8 10 @TTtTttTT,. point 0 nongenic,nongenic -2745 upstream,-4344 upstream {T26G10.4},{T26G10.3} 3023 CB6880_redo III 9419174 1 A T 4 3.62 0 18 1 5 6 @.ttTtt point 0 nongenic,nongenic -1257 upstream,-5832 upstream {T26G10.4},{T26G10.3} 3026 CB6880_redo III 9447126 1 A T 26 1.00 63 62 2 3 5 @tTt.. point 0 nongenic,nongenic -3598 upstream,1122 into {F54C8.4},{F54C8.6} 3027 CB6880_redo III 9448445 1 C G 255 1.00 63 62 0 24 24 @GGGggGGgGGGggGgGGGgGgGgg point 0 SNP none {haw45304} 3028 CB6880_redo III 9449797 1 C T 255 1.00 63 62 0 20 20 @tTtTtTTtTtTtTttTtTTT point 0 SNP none {haw45305} 3029 CB6880_redo III 9450593 1 C A 255 1.00 63 62 0 37 37 @AAAAaaaAaaAaaaaAaAaAaAaaaAAAAaAaaaaaa point 0 SNP none {haw45306} 3030 CB6880_redo III 9451505 1 G C 255 1.00 63 62 0 21 21 @cCccccccccCCcCcCCcccc point 0 SNP,three_prime_UTR none,none {haw45307},{F54C8.7a} 3031 CB6880_redo III 9452439 1 G T 196 1.00 63 62 1 12 13 @t,ttttttTttTt point 0 SNP none {haw45308,snp_F54C8[1]} 3032 CB6880_redo III 9463254 1 G A 67 1.00 63 62 1 4 5 @aaAa. point 0 nongenic,nongenic,nongenic,nongenic,nongenic -2419 upstream,233 into,365 downstream,365 into,392 downstream {B0464.9},{B0464.6.2,B0464.6.3},{B0464.5b.1},{B0464.6.1},{B0464.5c.1,B0464.5c.2} 3033 CB6880_redo III 9479166 1 G A 255 1.00 63 62 0 34 34 @AAAAaAaaAaaaAaAAAaAAaAAAaaaaaaAAAA point 0 SNP none {haw45312} 163753 CB6880_redo III 9571112 151 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered,uncovered non-exonic, 7758 to 7909 bp into,non-exonic, 8511 to 8662 bp into {C48B4.4a,C48B4.4b,C48B4.4c},{C48B4.4d} 3044 CB6880_redo III 9583693 1 C A 21 1.00 63 36 0 5 5 @aaaaG point 0 nongenic -1431 upstream {C48B4.3} 3045 CB6880_redo III 9583725 1 A T 245 1.00 63 62 0 14 14 @TTTTtTTtTTtTTT point 0 SNP none {haw45342} 3046 CB6880_redo III 9590111 1 T C 18 1.00 63 18 1 3 4 @.cCc point 0 nongenic,nongenic,nongenic -7849 upstream,1983 into,1985 into {C48B4.3},{C48B4.1.2},{C48B4.1.1} 3047 CB6880_redo III 9590112 1 G T 18 1.00 63 18 1 3 4 @.tTt point 0 nongenic,nongenic,nongenic -7850 upstream,1982 into,1984 into {C48B4.3},{C48B4.1.2},{C48B4.1.1} 3048 CB6880_redo III 9630518 1 G A 89 1.00 63 62 15 30 45 @.aAAA.a,A,A,AA,..a,aAAAa.aAAA.AA.,,A.aaAAAaAA point 0 missense CCT->TCT[Pro->Ser] {F58A4.10.1,F58A4.10.2} 3049 CB6880_redo III 9637545 1 A G 99 1.00 63 60 0 7 7 @GGggcCc point 0 nongenic -527 upstream {F58A4.11} 3050 CB6880_redo III 9639395 1 T G 5 1.00 63 22 1 3 4 @G,Gg point 0 nongenic -2377 upstream {F58A4.11} 7372 CB6880_redo III 9639398 3 X X -1000 -999.99 -1000 -1000 5 -2 3 @,,,.. indel -3 SNP none {snp_C15H7[2]} 3051 CB6880_redo III 9643534 1 C G 255 1.00 63 62 0 39 39 @GGggGGGGgGgGgGgggGggGggGggGggGGggGgggGG point 0 SNP none {uCE3-1110} 3052 CB6880_redo III 9643535 1 G C 255 1.00 63 62 0 39 39 @CccCCCCcCcCcCcccCccCccCccCccCCccCcccCCc point 0 SNP none {uCE3-1111} 3054 CB6880_redo III 9678830 1 G C 210 1.00 63 62 4 16 20 @cCC,CC,CCcccc,CCc,Cc point 0 missense TTC->TTG[Phe->Leu] {C07A9.6} 3055 CB6880_redo III 9754430 1 C A 255 1.00 63 62 0 28 28 @AaaAAaAAaAAaAAAaaaAaaAAaaAAa point 0 missense,SNP GAG->GAT[Glu->Asp],none {T05G5.8.1,T05G5.8.2},{haw45405} 3060 CB6880_redo III 9796154 1 T C 255 1.00 63 62 0 42 42 @CcCCcccCCcccCCCCCCcCCCcCccCcCcCCccCccCcCcC point 0 SNP none {haw45434} 3064 CB6880_redo III 9858891 1 A G 5 1.00 63 62 3 3 6 @GGg,,, point 0 nongenic,nongenic,nongenic -1736 upstream,-490 upstream,190 into {K11H3.7},{K11H3.1b},{K11H3.1a,K11H3.1c.2,K11H3.1d.2} 3065 CB6880_redo III 9913766 1 C A 255 1.12 63 62 0 41 41 @AAAaAaaaAaaAAaAaaaaaAaAaAAaAaAaAAaaAaAAAa point 0 nongenic,nongenic,nongenic -3211 upstream,-390 upstream,-670 upstream {F40F12.5},{F40F12.7.1,F40F12.7.2},{F40F12.7.3} 3066 CB6880_redo III 9918742 1 C G 229 1.00 63 62 0 28 28 @GGGGGGGGGGGGGGGGGGGGGGgGGGgG point 0 silent GGG->GGC[Gly->Gly] {F40F12.3} 3067 CB6880_redo III 9920715 1 G T 255 1.00 63 62 0 23 23 @ttTTtttttTTttTtTtTTTtTT point 0 SNP none {haw45505} 3068 CB6880_redo III 9920824 1 C T 44 1.00 63 62 2 3 5 @..TTT point 0 SNP none {haw45506} 3069 CB6880_redo III 9920856 1 G T 255 1.00 63 62 0 17 17 @TTTttttttTTtTtTtT point 0 SNP none {haw45507} 3070 CB6880_redo III 9938706 1 T C 121 4.12 63 36 15 41 56 @,Cccccc.cC..ccCCCcccccccCc.ccCcCCcccccCCccCcc,c,.,,..,,. point 0 nongenic 902 into {K03H1.5} 3071 CB6880_redo III 9938707 1 C A 37 4.12 63 62 23 33 56 @Aaaaaa.aA..aaA,Aaaaa.a.A..aaAaAA.aa.aAAaaAa.,.,.,,..,,., point 0 nongenic 901 into {K03H1.5} 3073 CB6880_redo III 9942889 1 T A 255 1.06 63 62 0 33 33 @aaaaaAaaaAaaaaaAaaaaaaaaaAAaAaAaa point 0 SNP none {haw45518} 3074 CB6880_redo III 9956571 1 A C 167 1.00 63 62 1 23 24 @ccc,CccCCCCccCCcCcccCcCc point 0 nongenic,nongenic,nongenic -458 upstream,-682 upstream,-683 upstream {K03H1.2.1,K03H1.2.2},{R10E12.1a},{R10E12.1b,R10E12.1c,R10E12.1d} 3078 CB6880_redo III 10004045 1 T G 56 1.00 63 10 1 6 7 @.gGGggg point 0 nongenic -362 upstream {C05B5.11} 3079 CB6880_redo III 10016572 1 A G 255 1.00 63 62 1 18 19 @GGGGggGGGGGgGgGG.gG point 0 SNP none {haw45557} 3080 CB6880_redo III 10019611 1 C T 78 1.00 63 24 0 4 4 @TtTT point 0 SNP none {haw45563} 3081 CB6880_redo III 10019932 1 G T 255 1.00 63 62 0 24 24 @ttTTTttTTtTTTtTTTTTTTTTT point 0 SNP none {haw45564} 7382 CB6880_redo III 10027249 0 X X -1000 -999.99 -1000 -1000 5 -3 2 @,.,,,Cc indel 0 nongenic,nongenic,nongenic -895 upstream,666 downstream,668 downstream {M04D8.3},{M04D8.2.2},{M04D8.2.1} 3082 CB6880_redo III 10027250 1 G C 9 1.00 63 2 3 5 8 @CcCCC,.. point 0 nongenic,nongenic,nongenic -893 upstream,667 downstream,669 downstream {M04D8.3},{M04D8.2.2},{M04D8.2.1} 3084 CB6880_redo III 10030881 1 T G 7 1.00 63 26 2 2 4 @,.Gg point 0 missense CAT->CCT[His->Pro] {M04D8.4} 3085 CB6880_redo III 10031245 1 T G 59 1.00 63 34 3 6 9 @GGGggG.., point 0 SNP none {uCE3-1131} 3086 CB6880_redo III 10032182 1 C T 16 1.00 63 62 3 4 7 @tttT,,, point 0 SNP none {haw45577} 3087 CB6880_redo III 10035095 1 G T 205 1.00 63 62 0 10 10 @ttttTTtttt point 0 SNP none {haw45579} 3088 CB6880_redo III 10035117 1 G T 119 1.00 63 62 0 6 6 @tttttt point 0 nongenic,nongenic -780 upstream,120 downstream {M04D8.6},{M04D8.8} 3089 CB6880_redo III 10035128 1 G T 87 1.00 63 62 0 4 4 @tttt point 0 nongenic,nongenic -769 upstream,131 downstream {M04D8.6},{M04D8.8} 3091 CB6880_redo III 10035170 1 C T 255 1.06 63 62 0 16 16 @tTTtttttTtttttTT point 0 nongenic,nongenic -727 upstream,173 downstream {M04D8.6},{M04D8.8} 3092 CB6880_redo III 10035184 1 A T 255 3.06 63 62 0 23 23 @TTtttttTtttttTTtttTTTtT point 0 nongenic,nongenic -713 upstream,187 downstream {M04D8.6},{M04D8.8} 3093 CB6880_redo III 10035309 1 G T 255 1.00 63 62 0 17 17 @TtttTtttTTTTTTTtT point 0 SNP none {haw45580} 3094 CB6880_redo III 10035384 1 G A 255 1.00 63 62 0 37 37 @AaAaAAaAaaAaAaAAaAAAAAAAaAAAAaAAAAAaA point 0 SNP none {haw45581} 3095 CB6880_redo III 10035425 1 C A 255 1.06 63 62 0 27 27 @AaAAAAAaAAAaAAAAaAaAAAAaAaa point 0 nongenic,nongenic -472 upstream,428 downstream {M04D8.6},{M04D8.8} 3096 CB6880_redo III 10036023 1 G A 255 1.00 63 62 0 39 39 @aAaaAaAAAaAAAaAAaAAaaAAAAAAAaaAaaAAAaAa point 0 SNP none {haw45582} 3097 CB6880_redo III 10061336 1 G C 82 1.00 63 62 1 5 6 @cCCCC, point 0 nongenic,nongenic -1840 upstream,478 into {T16G12.5},{T16G12.8} 3098 CB6880_redo III 10061337 1 C G 67 1.00 63 62 1 4 5 @GGGG, point 0 nongenic,nongenic -1839 upstream,477 into {T16G12.5},{T16G12.8} 3099 CB6880_redo III 10100793 1 C G 20 1.00 63 0 1 4 5 @gGgG, point 0 nongenic,nongenic -2818 upstream,685 into {T16H12.5b.1},{T16H12.6} 3100 CB6880_redo III 10100794 1 G C 33 1.00 63 0 0 5 5 @cCcCC point 0 nongenic,nongenic -2819 upstream,684 into {T16H12.5b.1},{T16H12.6} 3101 CB6880_redo III 10100795 1 G C 25 1.00 63 0 0 4 4 @CcCC point 0 nongenic,nongenic -2820 upstream,683 into {T16H12.5b.1},{T16H12.6} 3110 CB6880_redo III 10100856 1 G C 43 1.00 63 6 1 4 5 @.cCCC point 0 SNP none {uCE3-1139} 3111 CB6880_redo III 10100858 1 C G 79 1.00 63 42 0 6 6 @ggGGGG point 0 nongenic,nongenic -2883 upstream,620 into {T16H12.5b.1},{T16H12.6} 3118 CB6880_redo III 10131667 1 T A 61 1.00 63 62 1 3 4 @aaA, point 0 nongenic,nongenic,nongenic -5298 upstream,451 into,952 into {ZK1128.7},{ZK1128.6b.1,ZK1128.6b.2},{ZK1128.6a} 3120 CB6880_redo III 10148031 1 C G 255 1.25 63 62 0 16 16 @gGGgGggggggGggGG point 0 nongenic -4657 upstream {K08E5.2a,K08E5.2b.2,K08E5.2b.3} 3121 CB6880_redo III 10213727 1 G A 10 1.00 63 10 1 3 4 @,CAa point 0 nongenic,nongenic,nongenic -1887 upstream,980 downstream,990 into {T20G5.10},{T20G5.2.1},{T20G5.4} 3136 CB6880_redo III 10277507 1 C T 255 1.00 63 62 0 28 28 @tTTttTtTTttTTTTtttttTTtTTtTT point 0 nongenic,nongenic,nongenic -10231 upstream,-1515 upstream,967 into {R01H10.7},{K10G9.3},{R01H10.8} 3137 CB6880_redo III 10282658 1 T G 30 1.00 63 6 2 2 4 @Gg.. point 0 nongenic -3158 upstream {K10G9.2} 3138 CB6880_redo III 10282659 1 C T 7 1.00 63 30 2 2 4 @Tt.. point 0 nongenic -3157 upstream {K10G9.2} 3139 CB6880_redo III 10287323 1 C T 238 1.00 63 62 0 12 12 @tTttttTtTttt point 0 SNP none {haw45760} 3140 CB6880_redo III 10289002 1 G C 21 1.00 63 0 0 5 5 @CCCCT point 0 nongenic,nongenic -6025 upstream,496 downstream {K10G9.1},{K10G9.2} 3143 CB6880_redo III 10289344 1 G C 255 1.00 63 62 0 30 30 @CCCCCcccCCCcccCcCcccccccccCcCc point 0 SNP none {haw45764} 3144 CB6880_redo III 10291745 1 C A 112 1.00 63 62 1 6 7 @AAaAa.a point 0 nongenic -3282 upstream {K10G9.1} 3145 CB6880_redo III 10291756 1 T A 143 1.00 63 62 0 7 7 @aaaAAaa point 0 nongenic -3271 upstream {K10G9.1} 3149 CB6880_redo III 10354930 1 A T 255 1.00 63 62 0 27 27 @tTTTtTTtttTtttTtTTttttTtTtt point 0 SNP,three_prime_UTR none,none {haw45800},{T07C4.3b} 3150 CB6880_redo III 10359133 1 T C 31 1.00 63 14 0 4 4 @CCCC point 0 nongenic,nongenic -1546 upstream,-5853 upstream {T07C4.1.1},{C38H2.1} 3152 CB6880_redo III 10361911 1 T G 255 1.00 63 62 0 20 20 @gGggggGGGggGgGgGgggg point 0 SNP none {haw45805} 3153 CB6880_redo III 10368133 1 G A 255 1.00 63 62 0 19 19 @aAAAaAAaAAAaaaaAaaa point 0 SNP none {haw45808} 3154 CB6880_redo III 10368773 1 C G 255 1.00 63 62 0 32 32 @GGGGGggggGggggGggGGgGGggggggGgGG point 0 silent,SNP TCC->TCG[Ser->Ser],none {C38H2.1},{haw45810} 3172 CB6880_redo III 10378480 1 A G 13 1.00 63 20 4 4 8 @....gggg point 0 nongenic -3183 upstream {C38H2.2} 3177 CB6880_redo III 10385216 1 C G 25 1.00 63 62 3 4 7 @,,.GGGg point 0 nongenic,nongenic 15 downstream,301 downstream {C38H2.2},{C38H2.3} 7396 CB6880_redo III 10397838 0 X X -1000 -999.99 -1000 -1000 2 0 2 @..cgg indel 0 nongenic -1872 upstream {M03C11.1} 3180 CB6880_redo III 10399084 1 C A 255 1.00 63 62 0 41 41 @AaaAAaAaaAAAAaAaAAAaaaaAaAaaAaAAAAaAAAaaA point 0 SNP none {haw45839} 3184 CB6880_redo III 10454269 1 G A 255 1.12 63 62 0 20 20 @AaaAaaaaaaAaaAAAAaaa point 0 SNP none {haw45927} 3185 CB6880_redo III 10460401 1 A G 10 1.00 63 8 0 5 5 @NGGGG point 0 nongenic,nongenic -1113 upstream,-64 upstream {D2045.1a,D2045.1b.2,D2045.1c},{D2045.2} 3186 CB6880_redo III 10482439 1 G A 255 1.00 63 62 0 18 18 @aAAAAAaaAaAaAAAaaa point 0 nongenic,nongenic,nongenic -5576 upstream,226 into,407 downstream {F43D9.1},{D2045.8},{D2045.7} 3191 CB6880_redo III 10498007 1 G A 255 1.00 63 62 0 16 16 @aAaaAAaAAAAAAaAA point 0 SNP none {haw45998} 3194 CB6880_redo III 10500602 1 G A 255 1.00 63 62 0 42 42 @aAaaaAAAAaaAAaAAaaAAaAaAaAaaaAaaaaAaAAAaaa point 0 silent,SNP TTC->TTT[Phe->Phe],none {F43D9.2},{haw46003} 3195 CB6880_redo III 10500798 1 C T 255 1.00 63 62 0 18 18 @tttTTtttTttttttTtt point 0 SNP none {haw46004} 3196 CB6880_redo III 10500854 1 C T 236 1.00 63 62 0 11 11 @TttTttTtTtt point 0 SNP none {haw46006} 3197 CB6880_redo III 10501170 1 C T 255 1.00 63 62 0 16 16 @ttTTTTtTtTTTtTtT point 0 SNP none {haw46010} 3198 CB6880_redo III 10502428 1 G A 255 1.00 63 62 0 28 28 @AaaaAAAaaAaaAaaaAaaAAaaAaaaa point 0 SNP none {haw46016} 3199 CB6880_redo III 10502726 1 C T 255 1.00 63 62 0 14 14 @tttTtttttTTttt point 0 SNP none {haw46017} 3200 CB6880_redo III 10503428 1 G A 255 1.00 63 62 0 21 21 @aaAaAaaAAAaAAaAAAaAAa point 0 nongenic,nongenic 311 into,531 downstream {F43D9.2},{F43D9.5} 7399 CB6880_redo III 10509767 0 X X -1000 -999.99 -1000 -1000 2 1 3 @..ggg indel 0 inframe none {F43D9.3a,F43D9.3b} 3201 CB6880_redo III 10512573 1 C T 255 1.00 63 62 0 25 25 @tTtTtttttTTtTTtTTtTtttttT point 0 SNP,three_prime_UTR none,none {haw46030},{F43D9.3a} 3202 CB6880_redo III 10512825 1 C T 255 1.00 63 62 0 17 17 @tTtTtttTttTtttTtt point 0 SNP,three_prime_UTR none,none {haw46031},{F43D9.3a} 3203 CB6880_redo III 10513932 1 C T 255 1.00 63 62 0 17 17 @tttttTtTTtTtTTttt point 0 SNP none {haw46034} 3204 CB6880_redo III 10514115 1 G A 255 1.00 63 62 0 35 35 @AAAAaAaAAAaAAAaaaAAaaAAAAaaaAAaaaAA point 0 SNP none {haw46035} 7400 CB6880_redo III 10514381 1 X X -1000 -999.99 -1000 -1000 8 -4 4 @,..,.... indel -1 SNP none {uCE3-1167} 7401 CB6880_redo III 10515056 0 X X -1000 -999.99 -1000 -1000 3 -2 1 @,G,,C indel 0 nongenic,nongenic -2808 downstream,-5506 upstream {F43D9.3b},{T21C12.1b} 3206 CB6880_redo III 10520298 1 A C 255 1.00 63 62 0 29 29 @ccccCccCCccCcCcCCCCCCCCCCccCc point 0 SNP none {haw46040} 3207 CB6880_redo III 10528187 1 G C 255 1.00 63 62 0 59 59 @CCCccCcCCcCcccCccCcCccCcCcCcccCCCCCCcCcCcCCCCcccCCCCCCcCcCc point 0 SNP none {haw46050} 7405 CB6880_redo III 10529997 0 X X -1000 -999.99 -1000 -1000 5 -1 4 @,..,,aaA indel 0 inframe none {T21C12.1a} 7409 CB6880_redo III 10546966 2 X X -1000 -999.99 -1000 -1000 4 -3 1 @.,., indel -2 SNP none {pas48914} 3210 CB6880_redo III 10551514 1 T C 16 1.00 63 12 1 6 7 @CcccCc, point 0 three_prime_UTR none {T21C12.4b} 163754 CB6880_redo III 10554685 76 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered non-exonic, 3133 to 3209 bp into {T21C12.4b} 3224 CB6880_redo III 10770771 1 G A 148 1.00 63 62 6 17 23 @A.AAAaA,AaAA,,A.AAaaA,A point 0 missense GCA->ACA[Ala->Thr] {Y39A1B.3} 3231 CB6880_redo III 11016885 1 T C 255 1.00 63 62 0 18 18 @cCccccccccccCcCccC point 0 SNP none {haw46705} 3232 CB6880_redo III 11049423 1 G A 166 1.00 63 62 6 18 24 @AA.aAAAAaAa,,.,aaaaaAAa, point 0 nongenic -3367 upstream {Y48A6B.13.1} 3233 CB6880_redo III 11067969 1 G A 94 1.00 63 62 10 17 27 @Aa,,.A,AAa..A,,A,aaAaaAA,Aa point 0 nongenic,nongenic,nongenic -772 upstream,568 into,669 into {W09D6.1a,W09D6.1b,W09D6.1c},{Y48A6B.11b},{Y48A6B.11a} 3262 CB6880_redo III 11467824 1 A G 3 1.00 63 2 1 7 8 @GGGGGGg. point 0 nongenic 2865 into {Y47D3B.9} 3263 CB6880_redo III 11467825 1 C G 3 1.00 63 2 3 4 7 @GG,GG.. point 0 nongenic 2864 into {Y47D3B.9} 3264 CB6880_redo III 11472333 1 T A 255 1.00 63 62 0 15 15 @AaAAAaAaaaAaaaa point 0 nongenic -1644 upstream {Y47D3B.9} 3265 CB6880_redo III 11480573 1 G A 255 1.00 63 62 0 15 15 @aAAAAaAaAAAAaAa point 0 SNP none {haw47230} 3266 CB6880_redo III 11486301 1 G C 255 1.00 63 62 0 13 13 @cCccCcCcccccC point 0 SNP none {haw47238} 3270 CB6880_redo III 11489025 1 C G 22 1.31 63 62 1 5 6 @,ggggg point 0 nongenic,nongenic,nongenic -1816 upstream,-7728 upstream,1012 into {Y66A7A.2},{Y66D12A.24},{Y66D12A.23} 3271 CB6880_redo III 11504646 1 C A 255 1.00 63 62 0 18 18 @AAAaAaaAAAaAaaaaaa point 0 SNP none {haw47276} 3272 CB6880_redo III 11516787 1 C T 255 1.00 63 62 0 19 19 @TtttTttttttTtTtTTTT point 0 SNP none {haw47292} 3276 CB6880_redo III 11529305 1 G A 108 1.00 63 62 0 6 6 @aaaTAA point 0 nongenic,nongenic -5251 upstream,3051 into {Y66D12A.14},{Y66D12A.15} 3279 CB6880_redo III 11543276 1 G A 255 1.00 63 62 0 43 43 @aaaAAAaaAaAAaaAaAAaaaaaaaAaaaaaAaaaaAAAAAAa point 0 missense,SNP GGA->GAA[Gly->Glu],none {Y66D12A.14},{haw47330,uCE3-1248} 3283 CB6880_redo III 11558446 1 A G 7 1.00 63 62 5 5 10 @..,,,ggggg point 0 nongenic -2587 upstream {Y66D12A.12} 3284 CB6880_redo III 11562926 1 T G 26 1.00 63 62 4 6 10 @..,.GGGGGG point 0 nongenic,nongenic -486 upstream,387 downstream {Y66D12A.11},{Y66D12A.12} 3287 CB6880_redo III 11576713 1 C G 255 1.00 63 62 0 28 28 @ggGGGgGGggggggGggggggGggGgGG point 0 missense,SNP GCA->GGA[Ala->Gly],none {Y66D12A.8},{haw47425} 7414 CB6880_redo III 11591933 3 X X -1000 -999.99 -1000 -1000 6 -4 2 @.,,,.. indel -3 SNP none {snp_Y66D12A[6]} 3293 CB6880_redo III 11682308 1 G T 255 5.19 63 62 0 19 19 @TTTTTTtTTTtTtTTttTt point 0 nongenic,nongenic,nongenic,nongenic,nongenic,nongenic -14263 upstream,11353 into,6764 into,6857 into,6864 into,7764 into {Y41C4A.6},{Y41C4A.4c},{Y41C4A.4b},{Y41C4A.4a},{Y41C4A.4d},{Y41C4A.4e} 3296 CB6880_redo III 11694298 1 C A 57 1.00 63 52 0 5 5 @AAAag point 0 nongenic,nongenic,nongenic -2273 upstream,577 downstream,580 downstream {Y41C4A.6},{Y41C4A.4a},{Y41C4A.4e} 3306 CB6880_redo III 11809758 1 T C 255 1.00 63 62 0 14 14 @cccccccCCCCCcc point 0 nongenic,nongenic -121 upstream,313 downstream {C18D11.6},{C18D11.9} 3309 CB6880_redo III 11861725 1 A T 255 1.00 63 62 0 18 18 @tTTttTtttTtTtTtttt point 0 nongenic,nongenic 408 into,564 downstream {Y56A3A.2},{Y56A3A.4} 3311 CB6880_redo III 11897676 1 T G 13 1.00 63 2 0 5 5 @GGGGG point 0 nongenic,nongenic -4820 upstream,477 into {Y56A3A.5},{Y56A3A.11} 163755 CB6880_redo III 11959471 50 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered,uncovered non-exonic, 543 to 593 bp into,non-exonic, 547 to 597 bp into {Y56A3A.27.2},{Y56A3A.27.1} 3343 CB6880_redo III 12008909 1 C G 255 4.56 63 62 0 19 19 @gGGgGGgGggggggggggg point 0 nongenic,nongenic -11521 upstream,-6075 upstream {Y79H2A.1a.1},{Y56A3A.33} 3348 CB6880_redo III 12060765 1 T A 213 1.00 63 62 0 9 9 @AaaAAaAAa point 0 SNP none {haw48229} 3359 CB6880_redo III 12144028 1 A G 255 1.00 63 62 0 18 18 @gGggGgGgggGgGGGgGg point 0 nongenic,nongenic -13806 upstream,-8752 upstream {Y75B8A.6},{Y75B8A.7} 3360 CB6880_redo III 12239827 1 G A 60 5.25 63 30 0 4 4 @AaaA point 0 nongenic,nongenic,nongenic 421 downstream,457 downstream,728 downstream {Y75B8A.22.1},{Y75B8A.22.2},{Y75B8A.21} 163756 CB6880_redo III 12347586 65 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered non-exonic, 3570 to 3635 bp into {Y75B8A.30} 3386 CB6880_redo III 12413391 1 A T 13 1.00 63 0 0 5 5 @TTTTT point 0 nongenic,nongenic,nongenic -13352 upstream,7156 into,7997 into {Y49E10.14.1},{Y49E10.11a,Y49E10.11c},{Y49E10.11b} 3392 CB6880_redo III 12511900 1 A G 167 2.50 63 62 0 10 10 @GGGGGGGGGG point 0 ncRNA none {Y111B2A.5b} 3394 CB6880_redo III 12566563 1 C A 13 1.00 63 2 4 4 8 @.,,,aaAa point 0 nongenic,nongenic -3602 upstream,6719 into {Y111B2A.9b},{Y111B2A.9a} 3395 CB6880_redo III 12573264 1 G C 247 3.12 63 62 0 18 18 @cCcCCcCCCCCccCCCcC point 0 SNP none {haw49035} 3396 CB6880_redo III 12583126 1 A G 255 1.00 63 62 0 17 17 @ggggggGgGgGGGGGgG point 0 SNP none {haw49061} 3397 CB6880_redo III 12589042 1 T C 255 1.00 63 62 1 40 41 @CcCccCccccCcCccccCCccccCCCcCcCCccccCCccC. point 0 nongenic -13793 upstream {Y111B2A.9a} 3398 CB6880_redo III 12596781 1 T A 184 1.25 63 62 0 13 13 @AAAAAAAAAAaAa point 0 nongenic,nongenic,nongenic,nongenic -21532 upstream,755 into,843 into,880 into {Y111B2A.9a},{Y111B2A.10a,Y111B2A.10b.3},{Y111B2A.10b.2},{Y111B2A.10b.1} 3399 CB6880_redo III 12603549 1 G T 146 1.88 63 62 0 14 14 @tttttttttttttt point 0 nongenic,nongenic,nongenic -5056 upstream,-5621 upstream,4364 into {Y111B2A.10b.1},{Y111B2A.12},{Y111B2A.11} 3400 CB6880_redo III 12608700 1 G A 25 1.00 63 4 0 5 5 @aaAAc point 0 nongenic,nongenic -350 upstream,-470 upstream {Y111B2A.11},{Y111B2A.12} 3403 CB6880_redo III 12636079 1 T C 209 1.00 63 62 0 10 10 @CCcCCCCCCc point 0 nongenic,nongenic 9623 into,9628 into {Y111B2A.14.2},{Y111B2A.14.1} 3404 CB6880_redo III 12672103 1 T G 5 1.00 63 28 4 5 9 @...,ggggg point 0 nongenic,nongenic,nongenic -1455 upstream,-9951 upstream,828 into {Y111B2A.17},{Y111B2A.15},{Y111B2A.16} 3405 CB6880_redo III 12672105 1 G A 29 1.00 63 4 4 7 11 @...,aaaaaaa point 0 nongenic,nongenic,nongenic -1453 upstream,-9953 upstream,830 into {Y111B2A.17},{Y111B2A.15},{Y111B2A.16} 163757 CB6880_redo III 12679297 90 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered non-exonic, 5738 to 5828 bp into {Y111B2A.17} 3406 CB6880_redo III 12683449 1 A C 255 1.00 63 62 0 12 12 @ccCCcCcCccCc point 0 SNP none {haw49231} 3420 CB6880_redo III 12725512 1 A T 255 2.00 63 62 0 29 29 @ttTtTTtTtTTtttTttttTTTtTTttTt point 0 nongenic,nongenic -20820 upstream,11065 into {Y111B2A.21},{Y111B2A.22} 3430 CB6880_redo III 12881837 1 C A 255 1.00 63 62 0 19 19 @aaAaaAaAAAaAaAaAaAa point 0 nongenic,nongenic -23533 upstream,915 into {Y37D8A.14.1},{Y37D8A.13} 3431 CB6880_redo III 12912930 1 G T 255 1.00 63 62 0 31 31 @TttTttttTTTTTTtttTTtTtTTtttTttT point 0 nongenic 1884 into {Y37D8A.15} 3432 CB6880_redo III 12953211 1 T G 255 1.00 63 62 0 26 26 @ggGgggGgggggGgggggggggGggg point 0 missense,SNP AAT->ACT[Asn->Thr],none {Y39E4A.2a,Y39E4A.2b},{snp_Y39E4A[3]} 3441 CB6880_redo III 13032431 1 T C 45 1.00 35 32 0 5 5 @CCCCc point 0 nongenic,nongenic,nongenic -2884 upstream,-7550 upstream,1630 into {F14F7.4},{F54F12.2a},{F14F7.5} 3442 CB6880_redo III 13032474 1 T C 22 8.81 63 62 5 12 17 @CCC,,c,cCC,CCcC.C point 0 nongenic,nongenic,nongenic -2927 upstream,-7507 upstream,1673 into {F14F7.4},{F54F12.2a},{F14F7.5} 3443 CB6880_redo III 13032541 1 G C 146 1.19 63 62 0 10 10 @CcCcccCccC point 0 nongenic,nongenic,nongenic -2994 upstream,-7440 upstream,1740 into {F14F7.4},{F54F12.2a},{F14F7.5} 3444 CB6880_redo III 13032550 1 T C 101 2.00 62 62 0 9 9 @CcccCccCc point 0 nongenic,nongenic,nongenic -3003 upstream,-7431 upstream,1749 into {F14F7.4},{F54F12.2a},{F14F7.5} 3450 CB6880_redo III 13090022 1 C G 7 1.25 63 40 2 3 5 @G.gg. point 0 nongenic,nongenic,nongenic,nongenic -971 upstream,2649 into,2650 into,562 downstream {Y39E4B.13},{Y39E4B.3b},{Y39E4B.3a},{Y39E4B.3c} 3451 CB6880_redo III 13128496 1 A C 255 1.00 63 62 0 39 39 @CCcCCcCCccCcCCccCCcCcCCcCCCCCcCCCCCCCCC point 0 nongenic 5263 into {Y39E4B.8} 3452 CB6880_redo III 13128797 1 A G 255 1.00 63 62 0 20 20 @gGggGGGGgGgGGGGgGGgg point 0 nongenic 4962 into {Y39E4B.8} 3453 CB6880_redo III 13155781 1 G A 255 1.00 63 62 0 24 24 @aAAaAAaAaAaAAAAAAaAAaAAa point 0 SNP none {haw49837} 3454 CB6880_redo III 13202983 1 G T 187 4.75 63 62 0 13 13 @TTTTTTTTTTTTT point 0 nongenic,nongenic,nongenic,nongenic -1880 upstream,1788 into,1790 into,1794 into {Y39E4B.11},{Y39E4B.12b},{Y39E4B.12a.1,Y39E4B.12a.2},{Y39E4B.12c} 3456 CB6880_redo III 13264546 1 C A 255 1.06 63 62 0 19 19 @AaAAaAAAAAaaaaaaaaa point 0 nongenic,nongenic -1206 upstream,307 into {F56A8.5},{F56A8.4} 3457 CB6880_redo III 13264548 1 T A 255 1.06 63 62 0 19 19 @AaAAaAAAAAaaaaaaaaa point 0 nongenic,nongenic -1204 upstream,305 into {F56A8.5},{F56A8.4} 3458 CB6880_redo III 13265024 1 A T 255 1.00 63 62 0 20 20 @TTTTtTtTTTTTtTtTtTtt point 0 nongenic,nongenic -728 upstream,171 downstream {F56A8.5},{F56A8.4} 3459 CB6880_redo III 13279923 1 T C 255 1.00 63 62 0 14 14 @CCCccccccCcccc point 0 nongenic,nongenic,nongenic -11143 upstream,2300 into,2781 into {F56A8.6.1},{F56A8.7a},{F56A8.7b} 3460 CB6880_redo III 13281779 1 A G 255 1.00 63 62 0 37 37 @GGGGgGggggGGggGGGgGGGGggGggGGggGggGgg point 0 SNP none {haw49884} 3461 CB6880_redo III 13369339 1 A T 61 3.25 28 60 0 4 4 @Tttt point 0 nongenic,nongenic -1709 upstream,1371 into {T03F6.7},{T03F6.9} 163759 CB6880_redo III 13369351 111 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered non-exonic, 1493 to 1604 bp into {T03F6.9} 3462 CB6880_redo III 13369477 1 G A 48 4.00 63 40 0 4 4 @aaaa point 0 nongenic,nongenic -1847 upstream,1478 into {T03F6.7},{T03F6.9} 3471 CB6880_redo III 13536222 1 T A 129 1.00 63 62 0 5 5 @AaaAA point 0 nongenic,nongenic -12246 upstream,3613 into {Y76A2B.1},{Y76A2B.2} 7417 CB6880_redo III 13536918 0 X X -1000 -999.99 -1000 -1000 3 -1 2 @.,,ccc indel 1 nongenic,nongenic -12942 upstream,-2917 downstream {Y76A2B.1},{Y76A2B.2} 3474 CB6880_redo III 13536919 1 C A 13 1.00 63 46 0 5 5 @AAggg point 0 nongenic,nongenic -12943 upstream,2916 into {Y76A2B.1},{Y76A2B.2} 3531 CB6880_redo III 13738510 1 A T 147 1.00 63 62 0 5 5 @ttTTT point 0 nongenic -5593 upstream {K08E3.1} 3532 CB6880_redo III 13738514 1 T A 55 1.00 63 62 1 3 4 @,AAA point 0 nongenic -5589 upstream {K08E3.1} 3551 CB6880_redo III 13750753 1 T C 255 1.12 63 62 0 19 19 @ccCcccCcCCccccCcCcc point 0 nongenic,nongenic -1597 upstream,-2184 upstream {K08E3.10},{K08E3.2} 3554 CB6880_redo III 13751253 1 T C 3 3.25 63 0 0 4 4 @CCGc point 0 nongenic,nongenic -1097 upstream,-2684 upstream {K08E3.10},{K08E3.2} 3563 CB6880_redo IV 149978 1 A G 255 1.00 63 62 0 38 38 @GGGggGGGGGGGGGGGgGggGGgGGggGggGGGGGgGG point 0 SNP none {haw50079} 3564 CB6880_redo IV 176056 1 G T 12 1.00 63 0 0 4 4 @TTTT point 0 nongenic -2951 upstream {Y38C1AA.4} 3586 CB6880_redo IV 495583 1 T G 255 1.00 63 62 0 16 16 @gGgGGGggggggGGGg point 0 SNP none {haw50110} 3592 CB6880_redo IV 743294 1 A G 255 1.00 63 62 0 33 33 @GGGGGGGGGGGggGgGGGGGGGGGGGGgGGggg point 0 nongenic,nongenic -6572 upstream,1212 into {Y55F3C.3b},{Y55F3C.3a} 3593 CB6880_redo IV 757658 1 T A 255 1.06 63 62 0 29 29 @aAAaaaaaAaaAaaaAAAAAAaaaaAAAA point 0 missense TTC->TAC[Phe->Tyr] {Y55F3C.2} 3600 CB6880_redo IV 807998 1 T C 255 1.00 63 62 0 25 25 @CcCcCcCcccCCcccCccCCCCccc point 0 SNP none {haw50174} 3603 CB6880_redo IV 976182 1 T C 255 1.00 63 62 0 18 18 @CCCcCCcCCCccCCccCc point 0 SNP none {haw50433} 3605 CB6880_redo IV 976984 1 A G 255 1.00 63 62 0 18 18 @GGgggggggggggGgGGg point 0 SNP none {haw50435} 3607 CB6880_redo IV 991371 1 G C 255 1.00 63 62 0 25 25 @cccCcCcCcCccCcCcCcCcCcCCc point 0 nongenic,nongenic -917 upstream,-931 upstream {Y55F3AM.6a,Y55F3AM.6b},{Y55F3AM.7} 3608 CB6880_redo IV 997032 1 C G 255 1.00 63 62 0 24 24 @tgGggGggGggggggGGGgGgGgg point 0 nongenic,nongenic,nongenic -2197 upstream,600 into,947 downstream {Y55F3AM.5},{Y55F3AM.6a},{Y55F3AM.6b} 3617 CB6880_redo IV 1197597 1 G T 255 1.00 63 62 0 29 29 @TTTTTTTTTTTttttTTttttTtTtTttt point 0 SNP none {haw50776} 7422 CB6880_redo IV 1365237 0 X X -1000 -999.99 -1000 -1000 2 3 5 @,,gg indel 0 nongenic -6012 upstream {F58F6.2} 3622 CB6880_redo IV 1365238 1 G C 17 1.00 63 48 2 2 4 @CC.. point 0 nongenic -6013 upstream {F58F6.2} 3623 CB6880_redo IV 1373554 1 C T 255 1.00 63 62 0 36 36 @ttttttTttTTtTTtTTTTttttTtttTttTTttTT point 0 nongenic -14329 upstream {F58F6.2} 3624 CB6880_redo IV 1386027 1 A G 255 1.00 63 62 0 27 27 @GggGggGGgGgggggGGGGggGggGgg point 0 nongenic,nongenic -134 upstream,-9464 upstream {Y104H12A.1},{F58F6.3} 3634 CB6880_redo IV 1438459 1 A T 255 1.00 63 62 0 31 31 @tGTTtttTttTtTttttTtTtTttttTttTt point 0 missense TCC->ACC[Ser->Thr] {Y77E11A.11.1,Y77E11A.11.2} 3639 CB6880_redo IV 1454041 1 T G 3 1.00 63 12 4 12 16 @GGGGGGGGGG,GG,.. point 0 nongenic -3032 upstream {Y77E11A.2} 3645 CB6880_redo IV 1495982 1 C T 255 1.00 63 62 0 29 29 @TTTTTTtTTtTtTTTTTttTtTTtttTtT point 0 missense GAT->AAT[Asp->Asn] {Y77E11A.13a,Y77E11A.13b} 3646 CB6880_redo IV 1529932 1 A C 3 1.00 63 18 2 6 8 @c.ccccc. point 0 nongenic 2714 into {K03H6.5} 3650 CB6880_redo IV 1614991 1 C A 14 1.00 63 2 2 4 6 @,,AAaa point 0 nongenic 1097 into {Y41D4B.9} 3651 CB6880_redo IV 1627205 1 C T 255 1.00 63 62 0 19 19 @tttttttttTtTTtTTTTT point 0 five_prime_UTR none {Y41D4B.27} 3652 CB6880_redo IV 1677353 1 A G 255 1.00 63 62 0 20 20 @GGGGgGgggGGGGgGGgGGg point 0 silent GTT->GTC[Val->Val] {Y41D4B.24} 3659 CB6880_redo IV 1695528 1 G C 255 1.00 63 62 0 38 38 @CcccCCCCcCCCCCcCCcCcCcccCCCccccCCccccc point 0 nongenic,nongenic -13370 upstream,-4368 upstream {Y41D4B.24},{K08D12.5} 3660 CB6880_redo IV 1812233 1 A G 119 8.44 63 62 0 24 24 @gGggGgggGggGgGGgGGgGgGGg point 0 nongenic,nongenic -8252 upstream,2865 into {Y38C1BA.1},{Y38C1BA.2a,Y38C1BA.2b} 3663 CB6880_redo IV 1917013 1 A C 194 1.00 63 62 0 10 10 @ccCccCCCcc point 0 SNP none {haw51958} 3664 CB6880_redo IV 1926902 1 T G 3 1.00 63 2 1 4 5 @GGGG. point 0 nongenic,nongenic -21294 upstream,3333 into {F52C12.3},{F52C12.4} 163761 CB6880_redo IV 1932436 134 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered non-exonic, 8866 to 9000 bp into {F52C12.4} 163762 CB6880_redo IV 1951233 50 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered non-exonic, 3036 to 3086 bp into {F52C12.3} 163763 CB6880_redo IV 2005346 55 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered non-exonic, 12256 to 12311 bp into {Y76B12C.2} 3684 CB6880_redo IV 2007039 1 C T 255 1.06 63 62 0 17 17 @tTtttTTtTTTtTtTTT point 0 nongenic 1954 into {Y76B12C.2} 3685 CB6880_redo IV 2022963 1 C T 25 1.00 63 24 2 3 5 @ttt,, point 0 nongenic 10029 into {Y76B12C.7} 3686 CB6880_redo IV 2022964 1 A G 25 1.00 63 24 2 3 5 @ggg,, point 0 nongenic 10028 into {Y76B12C.7} 3697 CB6880_redo IV 2130505 1 A T 255 1.00 63 62 0 20 20 @ttTtTtTttTtttTTtTtTT point 0 SNP none {haw52294} 3699 CB6880_redo IV 2170219 1 T G 12 1.00 63 0 0 4 4 @gggg point 0 nongenic,nongenic -5349 upstream,-5385 upstream {C54E4.4},{C54E4.1} 3701 CB6880_redo IV 2170225 1 G C 12 1.00 63 0 0 4 4 @cccc point 0 nongenic,nongenic -5355 upstream,-5379 upstream {C54E4.4},{C54E4.1} 3702 CB6880_redo IV 2170226 1 A C 3 1.00 63 2 0 5 5 @tcccc point 0 nongenic,nongenic -5356 upstream,-5378 upstream {C54E4.4},{C54E4.1} 3706 CB6880_redo IV 2226862 1 T C 255 1.50 63 62 0 15 15 @CCCCCCCccCCCCcC point 0 nongenic,nongenic 4034 into,4036 into {T04C4.1a,T04C4.1b.2},{T04C4.1b.1} 3712 CB6880_redo IV 2323194 1 T A 255 1.00 63 62 0 40 40 @aaAAaAaaaaaaAaaaaAaAAAAAAaaAAaaaaaAaaAaa point 0 nongenic,nongenic,nongenic -7206 upstream,-860 upstream,-862 upstream {Y38F2AL.4},{Y38F2AL.1.1},{Y38F2AL.1.2} 3719 CB6880_redo IV 2357212 1 G T 162 1.00 63 62 0 8 8 @tttttttt point 0 SNP none {haw52736} 3720 CB6880_redo IV 2359440 1 A G 255 1.00 63 62 0 14 14 @GggGgGGgggGgGG point 0 SNP none {haw52752} 3725 CB6880_redo IV 2373373 1 T C 238 1.94 63 62 0 13 13 @cCccCcccccCCC point 0 nongenic,nongenic -5089 upstream,2742 into {Y38F2AR.13},{Y38F2AR.5} 3726 CB6880_redo IV 2389436 1 C T 255 1.00 63 62 0 36 36 @TTttTTtttTtTttTttttTTTtTtTttTTTtttTT point 0 nongenic,nongenic,nongenic,nongenic -4 upstream,-6 upstream,-760 upstream,-762 upstream {Y38F2AR.2.1},{Y38F2AR.2.2},{Y38F2AR.9.1},{Y38F2AR.9.2} 3728 CB6880_redo IV 2425681 1 C T 255 1.00 63 62 0 28 28 @TTTTtttttTTtTTttTTtttttTTTtt point 0 nongenic,nongenic -13272 upstream,-7309 upstream {Y38F2AR.12a},{C45G7.4} 3730 CB6880_redo IV 2502956 1 A G 147 2.44 63 62 0 16 16 @GgGggggggGgGGGGg point 0 nongenic,nongenic -1368 upstream,905 downstream {Y69A2AR.16},{Y69A2AR.17} 3731 CB6880_redo IV 2519842 1 C A 70 1.00 63 62 0 7 7 @aaaaAaA point 0 nongenic,nongenic,nongenic -11930 upstream,-22480 upstream,10445 into {Y69A2AR.22},{Y69A2AR.15},{Y69A2AR.16} 3732 CB6880_redo IV 2519843 1 T A 70 1.00 63 62 0 7 7 @aaaaAaA point 0 nongenic,nongenic,nongenic -11931 upstream,-22479 upstream,10444 into {Y69A2AR.22},{Y69A2AR.15},{Y69A2AR.16} 3733 CB6880_redo IV 2519844 1 T A 68 1.00 63 62 0 7 7 @aaaaAaA point 0 nongenic,nongenic,nongenic -11932 upstream,-22478 upstream,10443 into {Y69A2AR.22},{Y69A2AR.15},{Y69A2AR.16} 3735 CB6880_redo IV 2544253 1 A C 56 1.00 63 62 0 9 9 @GGcGccccc point 0 nongenic 1931 into {Y69A2AR.15} 3736 CB6880_redo IV 2544993 1 A T 255 1.00 63 62 0 15 15 @tTttttttttTTTtt point 0 nongenic 2671 into {Y69A2AR.15} 3751 CB6880_redo IV 2749281 1 C G 3 1.00 63 0 1 4 5 @.gggg point 0 nongenic -2597 upstream {Y54G2A.41} 3759 CB6880_redo IV 2764152 1 C T 255 1.00 63 62 0 39 39 @tTTTTTttTTTTTtTtttTtTtTTttTtTtTtttTTTtt point 0 premature_stop CGA->TGA[Arg->stop] {Y54G2A.38} 3763 CB6880_redo IV 2938535 1 C T 255 1.00 63 62 0 47 47 @tTtTTttTTTtTtTTtttTTttTtTTtTtTttttTTTTTttttTgtt point 0 silent CCG->CCA[Pro->Pro] {Y54G2A.24b} 3764 CB6880_redo IV 2963767 1 T G 255 1.00 63 62 0 26 26 @GGggGGGGGGGgGGGgGGGGGGGGGG point 0 nongenic,nongenic,nongenic -23887 upstream,571 downstream,626 into {Y54G2A.24a},{Y54G2A.25a,Y54G2A.25c},{Y54G2A.35} 3765 CB6880_redo IV 2966845 1 C T 255 1.00 63 62 0 33 33 @tTtttttTTtTTTttttTTtTTTTttTTtTttT point 0 five_prime_UTR,premature_stop none,TGG->TGA[Trp->stop] {Y54G2A.25c},{Y54G2A.25a} 3774 CB6880_redo IV 2999123 1 A G 255 1.00 63 62 0 19 19 @gGggggGggGggGgGGGgg point 0 silent CCT->CCC[Pro->Pro] {Y54G2A.27} 3777 CB6880_redo IV 3120950 1 C T 255 1.00 63 62 0 40 40 @TtTtTttTTTtTtTtTTTTttTTtTTTttTTttTtTtTtt point 0 missense GCC->ACC[Ala->Thr] {Y67D8C.10a,Y67D8C.10b.1,Y67D8C.10b.2,Y67D8C.10c,Y67D8C.10d} 3780 CB6880_redo IV 3206809 1 G A 43 7.44 28 16 1 7 8 @.AaAAaAa point 0 nongenic,nongenic -6958 upstream,2256 into {M4.1},{M4.2} 3783 CB6880_redo IV 3209012 1 C A 42 5.69 63 62 13 31 44 @A,a,,,a.Aa,AaAAAa,aAAaa.aaa.AAAAaaAaAAa,,,a, point 0 SNP none {haw54198} 3784 CB6880_redo IV 3328343 1 C T 255 1.25 63 62 0 18 18 @TTttttTTttTTTtttTt point 0 nongenic 867 into {F42A6.4} 3787 CB6880_redo IV 3349977 1 C T 152 1.00 63 62 2 9 11 @TtT.tTt.Ttt point 0 five_prime_UTR none {F42A6.9} 3793 CB6880_redo IV 3446027 1 A G 24 1.00 63 62 1 5 6 @,ggggc point 0 nongenic,nongenic,nongenic -1828 upstream,-7577 upstream,499 into {F09D12.2},{F58E2.9},{F58E2.5} 3800 CB6880_redo IV 3524137 1 A G 7 1.00 63 2 0 4 4 @ccGG point 0 nongenic,nongenic,nongenic -3210 upstream,-9577 upstream,2462 into {M57.2.2},{C09G12.9},{Y37E11C.1} 3801 CB6880_redo IV 3525903 1 T A 183 1.00 63 62 0 11 11 @aaaaaaaaaaa point 0 three_prime_UTR none {Y37E11C.1} 3803 CB6880_redo IV 3570819 1 A G 111 1.00 63 0 1 4 5 @,ggGG point 0 five_prime_UTR none {B0212.6} 3806 CB6880_redo IV 3734664 1 T C 9 1.00 63 12 1 5 6 @.ccccc point 0 nongenic,nongenic -9207 upstream,823 into {Y37E11AM.2.1},{Y37E11AM.1} 3807 CB6880_redo IV 3831278 1 T C 54 1.00 63 62 0 4 4 @cccc point 0 nongenic,nongenic,nongenic,nongenic -11959 upstream,-8435 upstream,1738 into,4412 into {M02B7.5},{F28F9.2},{M02B7.6},{F28F9.3} 3808 CB6880_redo IV 3834179 1 C T 255 7.19 63 62 2 29 31 @ttTtTTtttttttTTtTtTTt,TT,tTtTtt point 0 nongenic,nongenic,nongenic,nongenic -14860 upstream,-5534 upstream,1711 into,981 into {M02B7.5},{F28F9.2},{F28F9.3},{M02B7.6} 3816 CB6880_redo IV 3897061 1 C T 255 1.00 63 62 0 32 32 @TTTTttTttTtTttTttttTTTTttTTTTtTt point 0 nongenic -3503 upstream {F56D6.7} 3818 CB6880_redo IV 3897866 1 T A 254 1.00 63 62 0 11 11 @AaAaAAaaAAa point 0 nongenic -2698 upstream {F56D6.7} 3823 CB6880_redo IV 3909995 1 A C 19 1.00 63 0 0 5 5 @ccccc point 0 nongenic,nongenic -5608 upstream,201 downstream {F56D6.5},{F56D6.13} 3824 CB6880_redo IV 3932316 1 C T 255 1.06 63 62 0 39 39 @tttTTtTTTTtTTtttTttTTTTTtTtTtTtTTTTtttt point 0 nongenic,nongenic -410 upstream,747 downstream {Y46C8AL.3},{F56D6.15} 3840 CB6880_redo IV 4006525 1 T A 255 1.00 63 62 0 27 27 @aAaaAaAaaAAAaaAaAAaAaaaaAAa point 0 nongenic,nongenic,nongenic -1487 upstream,1038 into,997 into {W02C12.1},{W02C12.2},{W02C12.2b} 3842 CB6880_redo IV 4014349 1 A C 21 1.00 63 8 2 3 5 @,,ccc point 0 nongenic,nongenic,nongenic 159 downstream,422 downstream,443 downstream {W02C12.1},{W02C12.3g.1},{W02C12.3d.1} 7435 CB6880_redo IV 4014351 0 X X -1000 -999.99 -1000 -1000 3 0 3 @,Gg.. indel 1 nongenic,nongenic,nongenic 161 downstream,421 downstream,442 downstream {W02C12.1},{W02C12.3g.1},{W02C12.3d.1} 3843 CB6880_redo IV 4040393 1 C G 8 1.00 63 4 3 4 7 @.,G,ggg point 0 five_prime_UTR none {F35F11.2} 3844 CB6880_redo IV 4047471 1 C T 255 1.00 63 62 0 26 26 @TtttTttttttttTttTttTttttTT point 0 missense CTT->TTT[Leu->Phe] {F35F11.1} 3847 CB6880_redo IV 4163099 1 C T 255 1.12 63 62 0 43 43 @tTttTtTTTTtTTTtttttTttTttTtTTTTtTtTttTTtTtt point 0 silent TTC->TTT[Phe->Phe] {K08D10.8} 3848 CB6880_redo IV 4166340 1 A T 255 1.06 63 62 0 20 20 @tTtTTTTTtttTTtTtTttT point 0 nongenic,nongenic -1690 upstream,170 downstream {K08D10.5},{K08D10.7.1,K08D10.7.2} 3850 CB6880_redo IV 4190768 1 C T 177 1.75 63 62 7 18 25 @TttTtTttt,,T,tTttt,,Tt.t, point 0 nongenic,nongenic,nongenic -4651 upstream,1770 into,764 downstream {K08D10.11},{K06B9.2},{K06B9.4} 3852 CB6880_redo IV 4452726 1 C T 255 1.00 63 62 0 14 14 @TTtttTtttTttTt point 0 nongenic,nongenic 2679 into,713 downstream {R08C7.12.1},{R08C7.1} 3856 CB6880_redo IV 4583605 1 A G 19 1.00 63 62 3 5 8 @..,GGggg point 0 five_prime_UTR none {F28E10.1d} 3871 CB6880_redo IV 4931163 1 A C 255 1.00 63 62 0 30 30 @CcCCcCCcCccCCCcCcCCcCCcCCCcccC point 0 missense,SNP AAC->CAC[Asn->His],none {Y9C9A.8},{haw56120,snp_Y9C9A[1]} 3873 CB6880_redo IV 4972666 1 C T 255 1.00 63 62 0 21 21 @TtTTtTTTTtTtTTttTTTTT point 0 missense,SNP GTT->ATT[Val->Ile],none {Y9C9A.15},{haw56128} 3874 CB6880_redo IV 5005086 1 G A 255 1.00 63 62 0 43 43 @AaaaAaaAaAaAaAaAAAAaaAAAAAaAaAAaaAaaAAAAAAa point 0 missense GGA->AGA[Gly->Arg] {T28H11.4} 3882 CB6880_redo IV 5036554 1 C T 255 1.00 63 62 0 33 33 @tTTTTTtttTtTtTtTTTTtTtTTtTTtTtTtt point 0 nongenic,nongenic -1250 upstream,-3176 upstream {C09B9.1},{C09B9.4} 3883 CB6880_redo IV 5151858 1 G T 255 1.00 63 62 0 25 25 @TTTTTTTtTtTTtTTTTTTtTTTTT point 0 nongenic,nongenic 323 downstream,835 downstream {C24D10.9},{C24D10.5} 3889 CB6880_redo IV 5308471 1 A C 255 1.00 63 62 0 25 25 @CCCCCCCCCCCCcCCCCCccCCcCC point 0 nongenic,nongenic -1751 upstream,-99 upstream {ZK354.3},{ZK354.9} 3890 CB6880_redo IV 5371120 1 C G 3 1.00 63 0 1 3 4 @G.gg point 0 nongenic 1326 into {F41H10.3a,F41H10.3b} 3891 CB6880_redo IV 5371122 1 C G 3 1.00 63 2 1 3 4 @G.gg point 0 nongenic 1328 into {F41H10.3a,F41H10.3b} 3892 CB6880_redo IV 5371123 1 G C 14 1.00 63 2 0 4 4 @Cccc point 0 nongenic 1329 into {F41H10.3a,F41H10.3b} 3893 CB6880_redo IV 5405347 1 C T 7 1.00 63 22 2 4 6 @TTtT.. point 0 missense CTT->TTT[Leu->Phe] {ZK616.1} 3894 CB6880_redo IV 5426794 1 G T 255 1.00 63 62 0 29 29 @tttttTTTtttTttTTTTTTTtttTtTtt point 0 SNP none {haw56297} 3895 CB6880_redo IV 5452640 1 G A 235 1.00 63 62 0 14 14 @AAAAAAAAAAAaAa point 0 nongenic,nongenic -226 upstream,-549 upstream {Y4C6A.3},{Y4C6A.4} 3897 CB6880_redo IV 5529118 1 A T 36 1.00 63 0 0 4 4 @TtTt point 0 nongenic -12865 upstream {B0273.4a,B0273.4b} 163765 CB6880_redo IV 5693699 56 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered non-exonic, 2684 to 2740 bp into {C55C3.8} 3903 CB6880_redo IV 5828539 1 C T 255 1.00 63 62 0 35 35 @tttTTtTtTtttttTTtttttTtttTttttTTTTt point 0 nongenic,nongenic,nongenic,nongenic,nongenic,nongenic -10844 upstream,-14413 upstream,1375 into,1636 into,1646 into,1647 into {C06E7.2.1},{C31H1.8},{C10G6.1b.2},{C10G6.1b.1},{C10G6.1a.2},{C10G6.1a.1} 3904 CB6880_redo IV 5891622 1 C T 255 1.00 63 62 0 34 34 @tTTTTtTttTtttttTTtTTTttTTTTttttTtT point 0 missense ACC->ATC[Thr->Ile] {H04M03.3} 3905 CB6880_redo IV 5915431 1 C T 255 1.00 63 62 0 30 30 @TTTttTttTttttTtTTtttTTTttttttt point 0 nongenic,nongenic -14121 upstream,-572 upstream {H04M03.12},{H32C10.3} 3906 CB6880_redo IV 5982753 1 C T 255 1.00 63 62 0 38 38 @tTTTtTTTTtTtTtTTTTtTTTTtTTTttTtttTTttt point 0 silent ATC->ATT[Ile->Ile] {B0350.2a.1,B0350.2a.2,B0350.2b.1,B0350.2b.2,B0350.2c.1,B0350.2c.2,B0350.2d.1,B0350.2d.2,B0350.2d.3,B0350.2e.1,B0350.2e.2,B0350.2f.1,B0350.2f.2} 3908 CB6880_redo IV 6060500 1 G A 255 1.00 63 62 0 21 21 @AaaAAaaAAaAaaaaaaAaaA point 0 nongenic,nongenic,nongenic -25977 upstream,-6447 upstream,5175 into {C46G7.4a},{H16O14.1},{H16O14.2a,H16O14.2b} 3909 CB6880_redo IV 6293805 1 G A 255 1.00 63 62 0 23 23 @AaAaaaAAAAAAaAAaaaaaAaA point 0 nongenic,nongenic -2979 upstream,-304 upstream {Y73B6BL.10},{Y73B6BL.9a,Y73B6BL.9b} 3912 CB6880_redo IV 6359838 1 A G 96 9.00 63 62 18 30 48 @gG,gg,.ggGG.G,GgGGggG.GGG.G.gGgG.gG,.GG,.,,G,G,, point 0 nongenic,nongenic -12374 upstream,-2201 upstream {Y73B6BL.16},{Y73B6BL.47} 3916 CB6880_redo IV 6435775 1 G A 255 1.00 63 62 0 31 31 @AAAAAAAaAAaaAAAAAAAAaAAAaAaAAAA point 0 nongenic,nongenic -2431 upstream,-4097 upstream {Y73B6BL.43},{Y73B6BL.25} 3917 CB6880_redo IV 6457161 1 G A 255 1.00 63 62 0 25 25 @aAaAaaAAAAAaAaaAaaAaaaaAA point 0 nongenic,nongenic -1299 upstream,-7174 upstream {Y73B6BL.26},{Y73B6BL.42} 3919 CB6880_redo IV 6637301 1 C T 255 1.00 63 62 0 48 48 @tttTttttTTtTttTTtTttTttttttTtttttTttttttTttTTTTt point 0 missense CTT->TTT[Leu->Phe] {C01B10.8.1,C01B10.8.2} 3920 CB6880_redo IV 6646382 1 G C 255 1.00 63 62 0 27 27 @cccccccCCCCCcCcccCccCCcCcCC point 0 five_prime_UTR,SNP none,none {C01B10.5a,C01B10.5b.1,C01B10.5b.2,C01B10.5c},{pas2157} 3929 CB6880_redo IV 6902049 1 A C 7 5.69 63 2 6 7 13 @,,c,,,.cccccg point 0 nongenic,nongenic -1884 upstream,1560 into {T22D1.5.2},{T22D1.8} 3936 CB6880_redo IV 7056612 1 A G 255 1.00 63 62 0 35 35 @GgGGGGggGGGgGGgggGGGGGGGggGGGggGgGG point 0 SNP none {haw57660} 163766 CB6880_redo IV 7066281 89 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered non-exonic, 901 to 990 bp into {Y43B11AL.1} 3937 CB6880_redo IV 7078855 1 C T 255 1.00 63 62 0 32 32 @tTTTTTttttTTTtTtttTttttttTttTtTt point 0 nongenic,nongenic -2642 upstream,-3707 upstream {Y43B11AR.1},{Y43B11AR.2} 7443 CB6880_redo IV 7226681 0 X X -1000 -999.99 -1000 -1000 3 2 5 @,,,Ttt indel 0 nongenic,nongenic,nongenic -74 upstream,586 downstream,587 downstream {R13A1.10},{D2024.5b.1},{D2024.5a.1} 3948 CB6880_redo IV 7527069 1 T G 255 1.00 63 62 0 37 37 @GgGGGGGggGGgGGGgGGGGGgGGGGGggGGGGgGGg point 0 SNP none {haw57987} 3949 CB6880_redo IV 7591627 1 A C 3 8.31 4 2 4 20 24 @CCcCCcCCcCcCCccccccc,,.. point 0 missense GAA->GAC[Glu->Asp] {Y2C2A.1} 3951 CB6880_redo IV 7596293 1 A C 26 4.19 14 2 0 7 7 @CcCCccc point 0 missense ACT->CCT[Thr->Pro] {Y2C2A.1} 3954 CB6880_redo IV 7596465 1 T A 13 2.19 0 10 0 5 5 @aaaaa point 0 nongenic,nongenic -9999 upstream,5921 into {F45E4.4},{Y2C2A.1} 3959 CB6880_redo IV 7596529 1 G C 51 1.00 26 50 0 12 12 @cccccccccccc point 0 nongenic,nongenic -9935 upstream,5985 into {F45E4.4},{Y2C2A.1} 3960 CB6880_redo IV 7596545 1 T A 53 1.00 26 52 0 9 9 @aaaaaaaaa point 0 nongenic,nongenic -9919 upstream,6001 into {F45E4.4},{Y2C2A.1} 163767 CB6880_redo IV 7596573 56 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered non-exonic, 6028 to 6084 bp into {Y2C2A.1} 3982 CB6880_redo IV 7600485 1 A T 255 1.00 63 62 0 41 41 @TtTtTttTTTTttttTtTtTTTTTTTtTtTtTTtTTtTttT point 0 missense,SNP CAA->CAT[Gln->His],none {Y2C2A.1},{haw58035} 3983 CB6880_redo IV 7607350 1 A G 130 2.25 63 62 0 16 16 @GggGgGGgggGgGGGG point 0 nongenic,nongenic -12263 upstream,886 into {F45E4.3b.1},{F45E4.4} 3984 CB6880_redo IV 7607351 1 A G 139 2.25 63 62 0 16 16 @GggGgGGgggGgGGGG point 0 nongenic,nongenic -12262 upstream,887 into {F45E4.3b.1},{F45E4.4} 3985 CB6880_redo IV 7607353 1 A G 114 2.25 63 62 1 15 16 @GggG.GGgggGgGGGG point 0 nongenic,nongenic -12260 upstream,889 into {F45E4.3b.1},{F45E4.4} 3990 CB6880_redo IV 7966992 1 C T 255 1.25 63 62 0 23 23 @TTttttttTttTttTtTTttttT point 0 nongenic -448 upstream {F57H12.5} 3991 CB6880_redo IV 8012779 1 C A 117 1.00 63 62 0 6 6 @AAAaaa point 0 nongenic,nongenic -1330 upstream,-366 upstream {C26B2.8},{Y42H9B.3} 3992 CB6880_redo IV 8015831 1 G C 255 7.62 63 62 0 28 28 @CCcCcCCcCcCCcCCCcCCCccCccccc point 0 nongenic,nongenic -363 upstream,211 downstream {C26B2.7},{C26B2.8} 7447 CB6880_redo IV 8061990 0 X X -1000 -999.99 -1000 -1000 11 0 11 @,,,,.,,,,,,Ccccc indel 0 nongenic -660 upstream {C18F3.2b,C18F3.2c} 3998 CB6880_redo IV 8274118 1 C T 255 1.00 63 62 0 23 23 @tTtttTttTtTtTtTTTtTTtTt point 0 missense GAT->AAT[Asp->Asn] {K07H8.11} 4004 CB6880_redo IV 8468403 1 C T 225 2.06 63 62 0 11 11 @TTtTTtTTTtT point 0 nongenic,nongenic,nongenic,nongenic -5677 upstream,-8143 upstream,3570 into,3654 into {C28C12.11b},{T01B11.4},{T01B11.7.2},{T01B11.7.1} 4025 CB6880_redo IV 8566666 1 A C 193 8.75 63 62 0 22 22 @CCCCCCCCCCCCCCCCCCCCCC point 0 nongenic,nongenic -2086 upstream,-498 upstream {Y59H11AM.3},{Y59H11AM.2} 4026 CB6880_redo IV 8566667 1 G C 192 8.75 63 62 0 22 22 @CCCCCCCCCCCCCCCCCCCCCC point 0 nongenic,nongenic -2087 upstream,-497 upstream {Y59H11AM.3},{Y59H11AM.2} 4058 CB6880_redo IV 8575147 1 A C 16 7.75 25 6 2 131 133 @..cCCCCCCCcccCCcCCCCCCccCCCCCcCCCCCCCCCCcCCCCCCcCCCCCcCCcCCcCCCCCCCCCCcCCCcCCCCCCCcCCCCCCCCCCCCCcCC point 0 nongenic -10376 upstream {Y59H11AR.2a.2} 4098 CB6880_redo IV 8602902 1 C A 255 1.00 63 62 0 26 26 @AaAAaAAaaAAaaaaAAAAaAaaAaa point 0 SNP none {haw58423} 4099 CB6880_redo IV 8602934 1 C A 255 1.00 63 62 0 19 19 @aAAAAaAaaAaaaaaaAAA point 0 SNP none {haw58424} 4101 CB6880_redo IV 8894794 1 A C 92 3.50 63 62 4 6 10 @c.cc,,cc.c point 0 nongenic,nongenic -6832 upstream,707 into {C27B7.5},{C27B7.4} 4105 CB6880_redo IV 8966627 1 G A 26 1.00 63 20 1 4 5 @.AAaa point 0 SNP none {haw58534} 4106 CB6880_redo IV 9038439 1 G A 255 1.00 63 62 0 32 32 @aaAaaaAAaaAaAaaaaaAAaAAaAaaaaaAa point 0 SNP none {haw58542} 4107 CB6880_redo IV 9040332 1 C T 255 1.00 63 62 0 26 26 @ttTTTTttttTtttttTtttttTTTT point 0 missense GGG->AGG[Gly->Arg] {Y73F4A.3} 4111 CB6880_redo IV 9048306 1 A G 255 8.56 63 62 23 232 255 @GGGGGGGGGGGGGGggggGGGGGGGGGGGGGggGGGGGGGGGGGGGGGgggGGGGGGGGGGGGGGGGGgggggGGGGGGGGGGGGGGGGGGGGgggggg point 0 SNP none {haw58549} 4113 CB6880_redo IV 9048807 1 C G 155 1.00 63 62 0 11 11 @ggGGGGGGGGa point 0 nongenic,nongenic -21182 upstream,-3474 upstream {ZC410.1a},{Y73F4A.1} 4114 CB6880_redo IV 9048812 1 T A 127 1.00 63 62 0 13 13 @AAAAAAAAgggga point 0 nongenic,nongenic -21177 upstream,-3479 upstream {ZC410.1a},{Y73F4A.1} 4122 CB6880_redo IV 9155021 1 A T 158 1.00 63 26 0 11 11 @TTtTTTttTTT point 0 SNP none {haw58572} 7455 CB6880_redo IV 9195667 0 X X -1000 -999.99 -1000 -1000 5 -2 3 @,..,.Cc indel 0 inframe none {C46C2.7} 4128 CB6880_redo IV 9195668 1 A C 8 1.00 63 56 2 3 5 @cCc,. point 0 missense GAA->GCA[Glu->Ala] {C46C2.7} 4129 CB6880_redo IV 9240534 1 A G 3 1.00 63 4 1 4 5 @CGG,g point 0 nongenic,nongenic 661 into,831 into {Y11D7A.3a},{Y11D7A.3b} 4130 CB6880_redo IV 9240537 1 C G 4 1.00 63 2 1 4 5 @,GGGg point 0 nongenic,nongenic 658 into,828 into {Y11D7A.3a},{Y11D7A.3b} 4132 CB6880_redo IV 9269038 1 T C 255 1.00 63 62 0 20 20 @cCCCCCcCCCcCCCCccccc point 0 nongenic,nongenic -1035 upstream,-2498 upstream {Y11D7A.13},{Y11D7A.19} 4133 CB6880_redo IV 9370616 1 C G 17 1.00 63 16 3 4 7 @gGGG... point 0 nongenic,nongenic -4132 upstream,-868 upstream {C10C5.1},{C10C5.2} 4134 CB6880_redo IV 9370617 1 A C 17 1.00 63 16 3 4 7 @cCCC... point 0 nongenic,nongenic -4133 upstream,-867 upstream {C10C5.1},{C10C5.2} 4135 CB6880_redo IV 9382467 1 G A 255 1.12 63 62 0 26 26 @AaaaaaAAaAaAAaaaaaAAAAAAaa point 0 missense GGT->GAT[Gly->Asp] {C10C5.5} 7458 CB6880_redo IV 9715774 2 X X -1000 -999.99 -1000 -1000 9 -7 2 @,,,,..... indel -2 SNP none {uCE4-1082} 4148 CB6880_redo IV 9745669 1 G A 255 1.56 63 62 0 39 39 @AAAAAAaaaAaaaaaAaaAAAAAAAAaaAaAaaaaaaaa point 0 missense CAC->TAC[His->Tyr] {C28D4.5} 4149 CB6880_redo IV 9764971 1 G C 38 4.81 63 62 0 6 6 @TTCcCC point 0 nongenic,nongenic 506 downstream,676 downstream {H27C11.1a},{T13F2.12} 4164 CB6880_redo IV 10329614 1 G T 25 1.00 63 62 3 6 9 @.,.TttTtt point 0 nongenic,nongenic,nongenic,nongenic,nongenic,nongenic,nongenic,nongenic,nongenic,nongenic,nongenic -8490 upstream,1244 into,137 into,1501 into,1519 into,1943 into,2186 into,463 into,4648 into,5374 into,558 into {R09E10.1.2},{K11E8.1i.1},{K11E8.1n},{K11E8.1m},{K11E8.1o},{K11E8.1k.2},{K11E8.1a},{K11E8.1l.2},{K11E8.1c.1,K11E8.1c.2,K11E8.1d.2,K11E8.1e.1,K11E8.1e.2,K11E8.1f.1,K11E8.1f.2,K11E8.1g.1,K11E8.1g.2,K11E8.1h.1,K11E8.1h.2,K11E8.1p},{K11E8.1d.1,K11E8.1k.1,K11E8.1l.1},{K11E8.1i.2} 4165 CB6880_redo IV 10409489 1 C A 57 1.00 63 62 4 5 9 @aaAaa.,., point 0 nongenic,nongenic,nongenic -39 upstream,468 downstream,540 downstream {R10H10.6},{R10H10.7.1},{R10H10.7.2} 4166 CB6880_redo IV 10414829 1 T G 19 1.00 63 62 4 7 11 @,.,,ggggGgg point 0 missense CAA->CCA[Gln->Pro] {F13B12.6.1,F13B12.6.2} 4171 CB6880_redo IV 10481852 1 C T 255 1.00 63 62 0 29 29 @TtttTTTtttttTTTTATTTTTTttTTTT point 0 nongenic,nongenic,nongenic -35 upstream,754 downstream,805 downstream {F01D4.4.1,F01D4.4.2,F01D4.4.3},{F01D4.5b},{F01D4.5a} 4173 CB6880_redo IV 10658710 1 A G 3 8.44 63 2 3 10 13 @.Ggc.cgcgg.gc point 0 nongenic,nongenic,nongenic -13458 upstream,-3118 upstream,1865 into {F56C4.3},{K08C7.2.1},{K08C7.1} 4174 CB6880_redo IV 10746936 1 C T 255 1.00 63 62 0 42 42 @tTtTTTttTTTTTTTttTtTtttttTTtttTttTTTTTTttt point 0 nongenic,nongenic,nongenic -8305 upstream,1312 into,856 into {ZC168.6},{T25B9.3a},{T25B9.3b} 4176 CB6880_redo IV 10878679 1 G A 255 1.00 63 62 0 39 39 @AAAaAaAaAaAaAaaAAAaaaAaAaaAaAAAAAAAAAaA point 0 missense,SNP CGT->TGT[Arg->Cys],none {F13E9.6},{haw59179} 4177 CB6880_redo IV 10883072 1 C T 255 1.00 63 62 0 42 42 @tTttTTtTttTttTTttttTttttttTTttTtTttTtttTTt point 0 silent AAG->AAA[Lys->Lys] {F13E9.5} 4178 CB6880_redo IV 10943769 1 A G 3 9.12 63 62 13 242 255 @GGNGGGGGGGGGGgGGGGgGGGggGGGgggggggggGggggGGGGGgggggGGGGGGGGGggggggggG,GGGGGGgggggggggGGGGgggggggggG point 0 nongenic 931 downstream {ZK593.9} 4182 CB6880_redo IV 10950096 1 A T 3 1.00 63 62 52 55 107 @,,,,.Tt,TTtTT,TTtT,Tt,,TT.ttTTt.tT,T,,tTT...T,.,TtT,Tt..T,,ttttTtt.tT,..ttt.T.Ttttt.Tt,t.,t.,..,,,. point 0 silent GTA->GTT[Val->Val] {Y69E1A.2} 4183 CB6880_redo IV 10950263 1 A C 3 1.38 63 4 41 64 105 @CC,ccCc.C.cCCC,c....C.cCC,,cC,,CC.,CCcC,C,cCC..CC,C.C,C,CCC,CCCCCCC.CC,c,CC.C,CcCCC..C.CCC,,,C,.C,C point 0 missense,SNP AAG->ACG[Lys->Thr],none {Y69E1A.2},{uCE4-1129} 4184 CB6880_redo IV 10950264 1 G A 5 1.38 63 2 41 67 108 @A,aaAa.A.aAAA,a....A.aAA,,aA,,AA.,AAaA,A,aAA..AA,A.A,A,AAA,AAAAAAA.AA,a,AA.A,AaAAA..A.AAA,,,A,.A,A. point 0 silent,SNP AAG->AAA[Lys->Lys],none {Y69E1A.2},{uCE4-1130} 4185 CB6880_redo IV 10950402 1 G A 75 1.00 63 62 51 123 174 @AaaaAaaaAAAA,,a,Aa.aa,a.,,.aA,AA,a.AaAA.aaaa.aaAAaaAAA,Aa.AA...Aa.a..AAAaa..A,A.AAAAA..a,A,,aaaAAaa point 0 silent,SNP GGG->GGA[Gly->Gly],none {Y69E1A.2},{uCE4-1131} 4186 CB6880_redo IV 10950911 1 A G 67 1.00 63 62 39 86 125 @GGg,G,G.g.,gGggGggg.GGG,,gG.ggGGG.g,g,G,,,GGG.g.g,gg,Ggg.,g.gG,gGGg,,gggGGGGG.GG,,ggG.Gg.ggGggg.ggG point 0 silent GCA->GCG[Ala->Ala] {Y69E1A.2} 4187 CB6880_redo IV 10984634 1 T C 47 1.00 63 62 24 29 53 @.cCC.C,,CcC,,,C.,,ccCc,C.c,c.c,c,.C,CC.CcC,ccCC,c,.C, point 0 three_prime_UTR none {Y43E12A.2} 4196 CB6880_redo IV 11009137 1 G A 255 1.00 63 62 0 33 33 @AaAAaaaAAaaAaaAAaaaAaaaaaAaaAAAaa point 0 nongenic,nongenic -126 upstream,862 downstream {F13H10.6},{F13H10.2a} 4198 CB6880_redo IV 11071114 1 C T 210 2.94 63 62 597 -342 255 @,,,T,TT,TTTTT,TT,TTTT,T,TTTTTTTt.ttt,TTT,,T,TT,TTTTTT,TTTTTT,TTt..tt.tt,TTTTTT,TTTT,TT,T,TTT,TTTTTT point 0 nongenic 884 downstream {Y5F2A.3} 4199 CB6880_redo IV 11071123 1 T C 255 1.75 63 44 1 254 255 @CCCCCCCCCNCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCC point 0 SNP none {haw59203} 4200 CB6880_redo IV 11071124 1 T A 45 1.94 63 62 395 -140 255 @,,,,,,,,,A,,A,,,,,,,,A,,,,,,,AA,,,,A,,,,,,,...........,,,,,,,,,,,,,,,,,,,,,,,,,A,,,,,,A,,,,,,A,,,,, point 0 nongenic 894 downstream {Y5F2A.3} 7464 CB6880_redo IV 11179024 0 X X -1000 -999.99 -1000 -1000 6 -3 3 @,,..,,aa indel 0 nongenic,nongenic,nongenic,nongenic -457 upstream,-590 upstream,-592 upstream,974 downstream {C08F8.9},{R07H5.2a.1},{R07H5.2a.2,R07H5.2b},{C08F8.7} 4238 CB6880_redo IV 11180495 1 A G 255 1.00 63 62 0 36 36 @gGggGGGgggGGGgGggGggGGggggGgggGGgGgG point 0 missense,SNP ATT->GTT[Ile->Val],none {R07H5.2a.1,R07H5.2a.2,R07H5.2b},{haw59219} 4239 CB6880_redo IV 11186120 1 G A 255 1.00 63 62 0 19 19 @AAAAaAAaAaAAAaAAAAA point 0 nongenic,nongenic,nongenic -862 upstream,174 downstream,225 downstream {R07H5.4},{R07H5.3b},{R07H5.3a,R07H5.3c} 4243 CB6880_redo IV 11226241 1 A C 50 2.06 31 24 0 13 13 @CCCCcCccccccc point 0 missense CAA->CCA[Gln->Pro] {C29F4.1} 4244 CB6880_redo IV 11308190 1 G A 255 1.00 63 62 0 39 39 @AAaAaaaAaaaAaAaAaAaAAaaAaAaAaAaaaaAAAAa point 0 nongenic,nongenic -1499 upstream,-2751 upstream {B0035.13},{B0035.1a,B0035.1b} 7467 CB6880_redo IV 11370100 0 X X -1000 -999.99 -1000 -1000 5 -4 1 @,,,gg,, indel 3 nongenic,nongenic,nongenic -1663 downstream,-2861 upstream,-8620 upstream {T01G1.3},{H02I12.1},{T01G1.4} 4262 CB6880_redo IV 11679687 1 G A 255 1.00 63 62 0 44 44 @AAaaaaAAAAAAAAAaAaaaAAaaaAAAAaAAaAaAaAAAAAaa point 0 missense GCT->GTT[Ala->Val] {ZK792.4a,ZK792.4b} 4263 CB6880_redo IV 11697068 1 G A 255 1.00 63 62 0 50 50 @aaaaaAaAaaAaAAaAaaAAaAaaAaAAAaAAAaAAaaaAAaAaaaaAAA point 0 missense CCA->CTA[Pro->Leu] {T22B3.1} 4264 CB6880_redo IV 11800118 1 G A 255 1.00 63 62 0 30 30 @aaAaAAaAAaaaaaaAaaAaaAaAaAaaAA point 0 nongenic,nongenic -7555 upstream,940 into {H01G02.3a,H01G02.3b,H01G02.3c},{H01G02.2} 4265 CB6880_redo IV 12021852 1 A G 83 1.00 63 4 0 4 4 @GgGG point 0 nongenic -6223 upstream {ZK617.2} 4266 CB6880_redo IV 12021853 1 G T 5 1.00 63 62 2 2 4 @Tt,, point 0 nongenic -6224 upstream {ZK617.2} 4269 CB6880_redo IV 12048854 1 A G 91 2.00 63 62 0 4 4 @GGGG point 0 nongenic,nongenic,nongenic -1973 upstream,617 into,977 downstream {T12G3.2b.2},{T12G3.4},{T12G3.8} 4270 CB6880_redo IV 12069459 1 G A 255 1.00 63 62 0 19 19 @aaAaaaaaAAAaaAAAAaA point 0 SNP none {haw59564} 4271 CB6880_redo IV 12091763 1 T A 255 1.00 63 62 0 30 30 @aaaaAaaaaAAAAaAAaAaaAaaaAaaaaA point 0 silent TCA->TCT[Ser->Ser] {F11A10.3} 4272 CB6880_redo IV 12105545 1 A T 255 1.00 63 62 0 32 32 @TtttTTtTTttTTtttttTTTTtTTTtTTTTT point 0 three_prime_UTR none {F11A10.4} 4273 CB6880_redo IV 12138205 1 T C 170 2.75 63 62 0 9 9 @CCCCCCCCC point 0 nongenic,nongenic,nongenic -888 upstream,623 downstream,785 downstream {B0001.4},{B0001.8.1},{B0001.8.2,B0001.8.3} 4274 CB6880_redo IV 12215764 1 C T 255 1.00 63 62 0 43 43 @TTTtTTtttttTttttttTTttttTTtTtTtttTtttTTTTtt point 0 silent AGG->AGA[Arg->Arg] {F35G2.4.1,F35G2.4.2} 4275 CB6880_redo IV 12239969 1 A C 126 2.50 63 62 0 4 4 @ccCC point 0 nongenic -1048 upstream {Y39C12A.6} 4280 CB6880_redo IV 12248644 1 A G 15 6.50 0 14 0 6 6 @GGGGGG point 0 nongenic -3876 upstream {Y39C12A.7} 4281 CB6880_redo IV 12253097 1 C T 255 1.00 63 62 0 16 16 @TtTttTtTTttttttT point 0 nongenic -479 upstream {Y39C12A.8} 4283 CB6880_redo IV 12302889 1 C T 255 1.00 63 62 0 32 32 @TTTTtTTTTTTttTtTTTTTtTTTtTTTTtTT point 0 nongenic -1639 upstream {C42C1.7} 4284 CB6880_redo IV 12305543 1 C T 255 1.00 63 62 0 21 21 @ttttttTTtttTTTtttTtTt point 0 nongenic,nongenic -4293 upstream,1111 into {C42C1.7},{K09E10.1} 4296 CB6880_redo IV 12334254 1 C A 255 1.00 63 62 1 30 31 @aaaaAAaA.AaaaAAAaaAAaAaaAaAaaaa point 0 nongenic,nongenic,nongenic -3294 upstream,-3393 upstream,316 into {F19B6.4},{F19B6.2a},{F19B6.1a,F19B6.1b} 4297 CB6880_redo IV 12334255 1 C A 255 1.00 63 62 0 33 33 @aaaaAAaAaAaaaAAAaaAAaAaaAaAaaaaAa point 0 nongenic,nongenic,nongenic -3293 upstream,-3394 upstream,315 into {F19B6.4},{F19B6.2a},{F19B6.1a,F19B6.1b} 7472 CB6880_redo IV 12336928 0 X X -1000 -999.99 -1000 -1000 4 -2 2 @.,,,Gg indel 0 nongenic,nongenic -2358 upstream,-621 upstream {F19B6.1a,F19B6.1b},{F19B6.4} 4298 CB6880_redo IV 12393299 1 C G 3 2.25 63 26 2 2 4 @,,GG point 0 nongenic,nongenic -11098 upstream,1208 into {F28D1.10},{F28D1.9} 4300 CB6880_redo IV 12393525 1 C A 255 1.00 63 62 0 50 50 @AAaAaAAaAAaAAAaaAAaAAAAAaaaAaaaaaaAAAAaAaAaAAAAAAt point 0 missense,SNP ATG->ATT[Met->Ile],none {F28D1.9},{haw59770} 4308 CB6880_redo IV 12430471 1 C G 106 1.81 63 62 0 5 5 @ggggg point 0 nongenic,nongenic,nongenic,nongenic -1986 upstream,-2136 upstream,2009 into,2022 into {F08G5.4},{F08G5.7},{F08G5.5.2},{F08G5.5.1} 4309 CB6880_redo IV 12430475 1 G C 138 2.69 63 62 0 7 7 @ccccccc point 0 nongenic,nongenic,nongenic,nongenic -1990 upstream,-2132 upstream,2005 into,2018 into {F08G5.4},{F08G5.7},{F08G5.5.2},{F08G5.5.1} 4310 CB6880_redo IV 12430477 1 A G 149 2.69 63 62 0 7 7 @ggggggg point 0 nongenic,nongenic,nongenic,nongenic -1992 upstream,-2130 upstream,2003 into,2016 into {F08G5.4},{F08G5.7},{F08G5.5.2},{F08G5.5.1} 4311 CB6880_redo IV 12430533 1 C T 191 5.06 63 62 0 14 14 @tttTTtTtttttTT point 0 nongenic,nongenic,nongenic,nongenic -2048 upstream,-2074 upstream,1947 into,1960 into {F08G5.4},{F08G5.7},{F08G5.5.2},{F08G5.5.1} 4313 CB6880_redo IV 12443051 1 C T 255 1.00 63 62 0 36 36 @ttTtTttTTttttTtTtttTtTTtttTtTTtTtTtt point 0 nongenic,nongenic 153 downstream,46 downstream {C25G4.2},{C25G4.1} 4316 CB6880_redo IV 12522378 1 C T 255 1.00 63 62 0 21 21 @TtTTtTTttTTtTTTTtTtTT point 0 missense GTT->ATT[Val->Ile] {F53B2.4} 4317 CB6880_redo IV 12534889 1 C T 255 1.00 63 62 0 30 30 @ttTtTtTttttTtTTttTtTTtttTtTTTt point 0 nongenic,nongenic -3776 upstream,-7113 upstream {F53B2.5},{F53B2.6} 4320 CB6880_redo IV 12545733 1 C T 255 1.00 63 62 0 25 25 @ttttTtttTTtTtttttttttTTtt point 0 nongenic,nongenic -2367 upstream,39 downstream {ZK795.1},{F53B2.6} 4321 CB6880_redo IV 12545902 1 C T 255 1.00 63 62 0 31 31 @TTtTTTtTtTTTTTTTTTttTTtTTTtTTtt point 0 SNP none {haw59832} 4322 CB6880_redo IV 12571922 1 A G 30 1.00 63 54 2 3 5 @,.GgG point 0 nongenic,nongenic -1415 upstream,-731 upstream {K08E7.5c},{K08E7.4} 4323 CB6880_redo IV 12581671 1 C T 255 1.00 63 62 0 23 23 @TtttttttTTtTTtTTtttTttt point 0 SNP none {haw59843} 4324 CB6880_redo IV 12597642 1 A T 11 1.00 63 58 2 3 5 @..ttt point 0 nongenic,nongenic -7245 upstream,1497 into {K08E7.7},{K08E7.9} 4325 CB6880_redo IV 12597643 1 T A 59 1.00 63 10 1 4 5 @.aaaa point 0 nongenic,nongenic -7246 upstream,1496 into {K08E7.7},{K08E7.9} 4326 CB6880_redo IV 12601681 1 C T 255 1.00 63 62 0 30 30 @TTttTtTtTTtttTTttTTTTTttTtTTtt point 0 silent AAG->AAA[Lys->Lys] {Y55D9A.2a,Y55D9A.2b} 4328 CB6880_redo IV 12670462 1 C T 255 1.00 63 62 0 31 31 @tTTTTTTtttTTTTTttTTTTTTttTtTTtt point 0 silent TTC->TTT[Phe->Phe] {C26H9A.2} 4329 CB6880_redo IV 12697437 1 G C 255 1.00 63 62 0 25 25 @ccccccCcCcCCCCCCCCCcCCcCC point 0 SNP none {haw59886} 4330 CB6880_redo IV 12730473 1 A G 195 2.81 63 62 2 10 12 @GggggggGGG,, point 0 SNP none {haw59889} 4337 CB6880_redo IV 12737809 1 C T 255 1.00 63 62 0 41 41 @TTTTTttTTtTtTTtTTttTTTtTttTtTTtttttTTTtTT point 0 nongenic,splice_acceptor 2522 into,none {T23F6.5},{T23F6.5} 4338 CB6880_redo IV 12781072 1 A C 159 1.00 63 62 0 17 17 @CCCCCCCCCCCCCCCCg point 0 nongenic,nongenic,nongenic -23429 upstream,-7953 upstream,5870 into {C36H8.3.1},{F07C6.3},{ZK897.1} 4339 CB6880_redo IV 12804567 1 C T 255 1.00 63 62 0 29 29 @TtTTtTtTTttTtttTtttTtttttTTTt point 0 nongenic -1331 upstream {F07C6.4a} 4340 CB6880_redo IV 12822141 1 C T 255 1.00 63 62 0 23 23 @TTTTtttttTtTTTtTTtTTTtt point 0 nongenic,nongenic -859 upstream,5113 into {F07C6.4c.2},{F07C6.4b} 4341 CB6880_redo IV 12869259 1 G T 255 1.00 63 62 0 22 22 @tttTTtTttTTTtTTtTTTTTt point 0 three_prime_UTR none {ZK896.6} 4343 CB6880_redo IV 12914584 1 C T 255 1.00 63 62 0 49 49 @ttTttTttTTTTtTTttTtTTTTTTTtTTTTtttttTtTttTTtttTTt point 0 missense GAC->AAC[Asp->Asn] {C32H11.1} 4344 CB6880_redo IV 12979116 1 T C 255 1.00 63 62 0 36 36 @CcCcCCcCCCCCCcCcCCccCCCCcCcccCcCcCcC point 0 SNP none {haw60243} 4345 CB6880_redo IV 13014924 1 C T 255 1.00 63 62 1 39 40 @TTtTtTtTTTTtTTttTtTTtTtTtTTtTtTTTTtTtt.T point 0 missense CCG->TCG[Pro->Ser] {F49E11.1b,F49E11.1c} 4346 CB6880_redo IV 13092702 1 G C 255 1.00 63 62 0 24 24 @ccCCcCCCcCCcccccCcCCCccc point 0 nongenic,nongenic,nongenic -1272 upstream,-1666 upstream,1111 into {C39E9.12.1,C39E9.12.2},{C39E9.9},{C39E9.11} 4347 CB6880_redo IV 13127459 1 T C 223 1.00 63 62 0 11 11 @cccccCCcccc point 0 SNP none {haw60403} 7479 CB6880_redo IV 13188308 0 X X -1000 -999.99 -1000 -1000 8 -5 3 @,,,,.,,,gG indel 0 nongenic -1426 upstream {F58D2.2} 4350 CB6880_redo IV 13188309 1 C G 18 1.00 63 62 2 5 7 @GgGGG., point 0 nongenic -1424 upstream {F58D2.2} 4351 CB6880_redo IV 13203416 1 A G 78 1.00 63 20 0 4 4 @gGgg point 0 nongenic,nongenic -6066 upstream,2848 into {C48D1.1a},{C48D1.2} 4358 CB6880_redo IV 13451972 1 T C 255 1.00 63 62 0 22 22 @ccccCccCCCCCccCCCcCCcC point 0 SNP none {haw60794} 163774 CB6880_redo IV 13523692 76 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered,uncovered,uncovered non-exonic, 15225 to 15301 bp into,non-exonic, 15793 to 15869 bp into,non-exonic, 16465 to 16541 bp into {F52G2.2b.2},{F52G2.2b.1},{F52G2.2a} 4370 CB6880_redo IV 13549411 1 T A 69 3.81 63 62 30 225 255 @,,.,.,,,,,,,,.,AAAAA,AA.,AAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAA.AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,A point 0 nongenic,nongenic,nongenic -1211 upstream,209 downstream,317 downstream {F52G2.3.1},{Y45F10B.13b},{Y45F10B.13a,Y45F10B.13c} 4372 CB6880_redo IV 13563245 1 G C 255 1.00 63 62 0 32 32 @cCcccccCcccccCccCcCccCCcCCCccCCc point 0 SNP none {haw60948} 4373 CB6880_redo IV 13563393 1 G T 255 1.00 63 62 0 21 21 @TtTTttTTTTTTttTtTTttT point 0 SNP none {haw60949} 4374 CB6880_redo IV 13602476 1 T A 255 1.00 63 62 0 22 22 @AaAAaaaaAAaAAaAaAaaaaA point 0 SNP none {haw60978} 4375 CB6880_redo IV 13603565 1 C T 255 1.00 63 62 0 21 21 @TttttTttTTttttttttTTT point 0 missense ACT->ATT[Thr->Ile] {Y45F10B.15} 4376 CB6880_redo IV 13662115 1 T G 255 1.00 63 62 0 26 26 @GgGggggGgGGgggGgggGggGggGg point 0 SNP,three_prime_UTR none,none {haw61075},{Y45F10C.2} 4378 CB6880_redo IV 13695677 1 C G 255 1.00 63 62 0 35 35 @gggggggggggGGgggGgGgGgGggGGGGggggGG point 0 nongenic -6914 upstream {T23G4.2} 4379 CB6880_redo IV 13695678 1 G C 255 1.00 63 62 0 35 35 @ccccccccccCCcccCcCcCcCccCCCCccccCCC point 0 nongenic -6915 upstream {T23G4.2} 4381 CB6880_redo IV 13740187 1 A G 3 4.75 28 4 1 3 4 @GG.g point 0 nongenic 821 downstream {C47A4.3} 7481 CB6880_redo IV 13791000 0 X X -1000 -999.99 -1000 -1000 8 -4 4 @,,,.,,,,tT indel 0 inframe none {Y45F10D.7} 4387 CB6880_redo IV 13793476 1 A C 146 1.00 63 62 0 6 6 @ccCCcc point 0 nongenic,nongenic -4787 upstream,2715 into {Y45F10D.9},{Y45F10D.7} 4388 CB6880_redo IV 13797853 1 C T 255 1.00 63 62 0 29 29 @tttttttttTttTtTtTtttttttTTttt point 0 missense GTT->ATT[Val->Ile] {Y45F10D.6} 4393 CB6880_redo IV 13838595 1 G A 255 1.00 63 62 0 24 24 @AAAAAAAAaaAAaaAAaAAAaAAa point 0 nongenic,nongenic,nongenic,nongenic -15726 upstream,-2237 upstream,6085 into,6351 into {B0513.6},{H08M01.1},{H08M01.2a},{H08M01.2b} 4394 CB6880_redo IV 13840157 1 C T 255 1.00 63 62 0 34 34 @tTTtTttTTTTtttTTTtttttTTtttTtTTTTt point 0 missense CCA->TCA[Pro->Ser] {H08M01.2a,H08M01.2b} 4404 CB6880_redo IV 13998616 1 C T 255 1.00 63 62 0 19 19 @ttTttttttttTtTtttTt point 0 nongenic,nongenic -12955 upstream,-5043 upstream {Y37A1B.12},{Y37A1B.11} 4406 CB6880_redo IV 14048662 1 C T 255 1.00 63 62 0 18 18 @tTttttttTTttttTTTt point 0 nongenic,nongenic -2504 upstream,-4914 upstream {Y37A1B.5},{Y37A1B.7} 4421 CB6880_redo IV 14089762 1 C T 255 1.00 63 62 0 40 40 @TttTTTTTtTttTTTTtTTtTtttTttttTtTTtTttttT point 0 nongenic -1458 upstream {F52B11.3} 4422 CB6880_redo IV 14089897 1 C T 255 1.00 63 62 0 46 46 @TTtTtttttTtttTTTTtttTTtTTttTTTttTtTTtTTtttTttt point 0 nongenic -1323 upstream {F52B11.3} 4425 CB6880_redo IV 14268412 1 T G 18 1.00 63 62 3 4 7 @.,,gggg point 0 nongenic,nongenic -18231 upstream,-8019 upstream {Y64G10A.8},{Y64G10A.6} 4426 CB6880_redo IV 14268413 1 G T 68 1.00 63 18 2 6 8 @,,ttttTt point 0 nongenic,nongenic -18232 upstream,-8018 upstream {Y64G10A.8},{Y64G10A.6} 4430 CB6880_redo IV 14347514 1 C A 255 1.00 63 62 0 28 28 @aaaaAaaaaAaaAaaaaAaAaaAaAaAa point 0 SNP none {haw62226} 4432 CB6880_redo IV 14377541 1 G C 12 1.00 63 0 0 4 4 @CCCC point 0 nongenic,nongenic -5644 upstream,1815 into {Y67A10A.15},{Y67A10A.7} 4433 CB6880_redo IV 14417143 1 C T 255 1.00 63 62 0 24 24 @ttTTTtTTTtTTTTtttttttTtt point 0 silent CTG->CTA[Leu->Leu] {F55B11.6} 4447 CB6880_redo IV 14539070 1 C T 255 1.00 63 62 0 30 30 @tTtTttTTTTTttTTttttTTTTTtTtttT point 0 nongenic,nongenic 656 downstream,779 downstream {T27E7.6},{T27E7.5} 4449 CB6880_redo IV 14581247 1 C T 255 1.00 63 62 0 26 26 @TtTTtTtTTTTttTTTtTTttTtTtt point 0 nongenic,nongenic -260 upstream,-34960 upstream {Y57G11B.7},{F13G11.1a} 4450 CB6880_redo IV 14590381 1 C T 255 1.00 63 62 0 21 21 @tTTtTtttTTTTtTtTTTTtt point 0 nongenic,nongenic -25826 upstream,-9394 upstream {F13G11.1a},{Y57G11B.7} 4451 CB6880_redo IV 14623070 1 C T 255 1.00 63 62 0 50 50 @TTTtTTtTTTTttTTTTTtTTTTtTtTTttTtTttttTTttTTtttTttT point 0 missense CCT->CTT[Pro->Leu] {F13G11.1a,F13G11.1b.1,F13G11.1b.2,F13G11.1b.3} 4452 CB6880_redo IV 14640549 1 C T 255 1.00 63 62 0 23 23 @ttTtTTTTTTtttTtttttTTtT point 0 nongenic 644 into {Y57G11C.39} 7484 CB6880_redo IV 14670515 0 X X -1000 -999.99 -1000 -1000 4 -2 2 @,.,,ttt indel 2 nongenic,nongenic -12491 upstream,-4588 downstream {Y57G11C.31},{Y57G11C.37} 4455 CB6880_redo IV 14691766 1 G A 255 1.00 63 62 0 21 21 @AaAAaAaaaaAAAaAAaaaAa point 0 SNP none {haw62984} 4458 CB6880_redo IV 14759633 1 C T 255 1.00 63 62 0 25 25 @TttTtTttttTttTTTTTtTTTTTT point 0 nongenic,nongenic -3010 upstream,1224 into {Y57G11C.7},{Y57G11C.6} 4459 CB6880_redo IV 14767506 1 C T 255 1.00 63 62 0 23 23 @ttTTTTtTttTTTttTttTTttt point 0 silent TCG->TCA[Ser->Ser] {Y57G11C.34} 4461 CB6880_redo IV 14839814 1 C T 41 2.00 34 58 2 34 36 @TtTTt,ttttttttTtTtTTtTTTTT.TTTTtTTtT point 0 nongenic,nongenic,nongenic -10738 upstream,2689 into,455 downstream {Y57G11C.17},{Y57G11C.22a},{Y57G11C.18} 4464 CB6880_redo IV 14947835 1 T C 4 5.38 22 0 1 4 5 @C.CCc point 0 nongenic,nongenic -2546 upstream,-2889 upstream {Y57G11C.48},{Y41E3.22} 4467 CB6880_redo IV 14992694 1 G T 255 1.00 63 62 0 28 28 @TttttTtttTttttTttTTTtttTTTTT point 0 SNP none {haw63537} 4468 CB6880_redo IV 14998777 1 C T 255 1.00 63 62 0 17 17 @TttTTtTttTttTtTtt point 0 SNP none {haw63554} 4476 CB6880_redo IV 15075723 1 G C 16 6.62 63 2 0 5 5 @CCCcc point 0 nongenic -6838 upstream {Y41E3.15} 4477 CB6880_redo IV 15075726 1 T C 5 8.00 63 2 0 6 6 @CCCccg point 0 nongenic -6841 upstream {Y41E3.15} 4490 CB6880_redo IV 15096229 1 C T 247 2.12 63 62 3 24 27 @TtTtTTTTTtTTtTTTttTt..T.tTt point 0 nongenic,nongenic,nongenic -27344 upstream,-7359 upstream,2108 into {Y41E3.15},{M199.1},{Y41E3.14} 7485 CB6880_redo IV 15148058 0 X X -1000 -999.99 -1000 -1000 12 -10 2 @,,,,,,.,,,,cc, indel 4 nongenic,nongenic -8557 upstream,-893 upstream {Y40H7A.2},{Y40H7A.1} 4498 CB6880_redo IV 15302984 1 C T 255 1.00 63 62 0 27 27 @TttTTTtTTTTTtTTtTTtTTTTtTTT point 0 ncRNA none {Y73F8A.1076} 4499 CB6880_redo IV 15313323 1 A T 255 1.00 63 62 0 21 21 @TttttttttTTtTTtttTTtT point 0 SNP none {haw64171} 4504 CB6880_redo IV 15381870 1 C T 233 1.00 63 62 2 15 17 @tttTttTtttTttT.T. point 0 nongenic,nongenic -18422 upstream,223 downstream {Y73F8A.21},{Y73F8A.20} 4505 CB6880_redo IV 15404139 1 C T 255 1.00 63 62 0 52 52 @TtttttTtTTTttTTTTTTTtTttTTtTTTttTTTtTtTttTtttttttttT point 0 silent CTG->TTG[Leu->Leu] {Y73F8A.21} 4508 CB6880_redo IV 15441116 1 C T 255 5.00 63 62 0 44 44 @ttTtttTttTtTttTtTTtTttTTtTtTTtTTTTtTtTttTTtt point 0 nongenic 253 into {Y73F8A.22} 4509 CB6880_redo IV 15448396 1 C T 255 1.00 63 62 0 15 15 @TTtTTttTTTttTTt point 0 nongenic,nongenic -3854 upstream,3057 into {Y73F8A.23},{Y73F8A.24} 4525 CB6880_redo IV 15557893 1 C T 255 2.19 63 62 3 29 32 @,t,TtTtttTTTTtT.TTttttTTTTtTTtTt point 0 nongenic,nongenic -21152 upstream,-3212 upstream {Y105C5A.3},{Y105C5A.1} 4530 CB6880_redo IV 15682245 1 C T 255 1.00 63 62 0 15 15 @ttttttttTTTTTtt point 0 nongenic,nongenic -28690 upstream,-739 upstream {Y105C5A.15},{Y105C5A.26} 4536 CB6880_redo IV 15696912 1 C T 255 1.00 63 62 0 37 37 @TTtttttttTTttTtttTTTTtttttttTttTttttt point 0 nongenic,nongenic -14023 upstream,-15406 upstream {Y105C5A.15},{Y105C5A.26} 4539 CB6880_redo IV 15718390 1 C T 255 1.00 63 62 0 30 30 @ttTttTTtTtttttTtttTtttTttttttt point 0 missense TCG->TTG[Ser->Leu] {Y105C5A.15} 4540 CB6880_redo IV 15749705 1 A G 255 1.00 63 62 0 18 18 @GgGGGGggggGgGGgggg point 0 SNP none {haw64925} 4558 CB6880_redo IV 15798018 1 T G 3 2.88 0 0 0 8 8 @gAgggGgg point 0 nongenic 62 downstream {Y105C5A.22} 4559 CB6880_redo IV 15799361 1 A G 3 7.12 0 18 3 6 9 @GGG.G,G.G point 0 nongenic,nongenic -20657 upstream,353 into {Y105C5A.23},{Y105C5A.22} 4560 CB6880_redo IV 15820303 1 C T 255 1.00 63 62 0 20 20 @TtttTttTTtTtttTtttTt point 0 nongenic,nongenic,nongenic -20589 upstream,-29597 upstream,285 into {Y105C5A.22},{Y105C5A.24},{Y105C5A.23} 4571 CB6880_redo IV 15869231 1 C T 255 1.00 63 62 0 25 25 @TTTtttTTTtTTTttTTTTtttTtt point 0 nongenic -1371 upstream {Y105C5B.1} 4572 CB6880_redo IV 15871052 1 T G 255 1.00 63 62 0 27 27 @GGGgggGggGgGGgGgGGgggGGGgGg point 0 missense,SNP TTG->TGG[Leu->Trp],none {Y105C5B.1},{haw65169} 4573 CB6880_redo IV 15895402 1 G C 10 1.00 63 20 1 4 5 @CCC.C point 0 nongenic -1212 upstream {Y105C5B.4} 4575 CB6880_redo IV 15925394 1 A T 255 1.00 63 62 0 14 14 @TTTtttTtttttTt point 0 SNP none {haw65323} 4576 CB6880_redo IV 15935820 1 T C 255 1.00 63 62 0 18 18 @cCCCCCcCCcCCccCCCC point 0 SNP none {haw65337} 4577 CB6880_redo IV 15939441 1 A G 16 6.75 45 0 0 8 8 @GGGGGGGG point 0 nongenic,nongenic -5566 upstream,2011 into {Y105C5B.10},{Y105C5B.11} 7489 CB6880_redo IV 15965558 2 X X -1000 -999.99 -1000 -1000 7 -3 4 @,,..,.. indel -2 frameshift,SNP none,none {Y105C5B.18},{uCE4-1508} 4578 CB6880_redo IV 16009333 1 C G 3 1.00 63 4 4 6 10 @,G,,,ggggg point 0 nongenic,nongenic,nongenic,nongenic,nongenic -14930 upstream,-47908 upstream,11246 into,11517 into,5168 into {Y105C5B.20},{Y105C5B.23},{Y105C5B.21a},{Y105C5B.21b.1},{Y105C5B.21b.2} 4579 CB6880_redo IV 16085619 1 C A 198 1.00 63 62 0 14 14 @aaaaaaaAaAaaaa point 0 SNP none {haw65640} 4580 CB6880_redo IV 16093568 1 C T 255 1.00 63 62 0 27 27 @TttTtttttTtttTtTTTttttttttT point 0 nongenic -38889 upstream {Y105C5B.29} 4587 CB6880_redo IV 16127364 1 T C 5 8.00 63 0 0 6 6 @CCCcgc point 0 nongenic -5093 upstream {Y105C5B.29} 4590 CB6880_redo IV 16171526 1 C T 255 1.00 63 62 0 29 29 @TttttttTttTTTTtttTTtTtTttTTtt point 0 nongenic,nongenic,nongenic -25480 upstream,-740 upstream,-808 upstream {Y7A9A.1},{Y105C5B.28a},{Y105C5B.28b} 4591 CB6880_redo IV 16199503 1 T C 255 1.00 63 62 0 46 46 @CcCcCCCccCcccCCCCccCCCCCcCCCCCCCCcCCCccCCCCCCc point 0 silent CTT->CTC[Leu->Leu] {Y7A9A.1} 4592 CB6880_redo IV 16204306 1 C T 255 1.00 63 62 0 25 25 @TtttTtttTTTtTtttTtTtTttTt point 0 nongenic 1953 into {H25K10.1} 4614 CB6880_redo IV 16245773 1 C T 255 1.00 63 62 0 20 20 @tTtTtTTttttTtTtTtttt point 0 nongenic,nongenic -3139 upstream,-7158 upstream {F38C2.1},{H25K10.7} 4615 CB6880_redo IV 16268577 1 C T 255 1.00 63 62 0 39 39 @ttTttTttTttTtttTTtttttttttTtTTtttTTtTtT point 0 nongenic -253 upstream {F38C2.4} 4616 CB6880_redo IV 16393926 1 A G 255 1.00 63 62 0 16 16 @gGGGgGgGGGGGgGGG point 0 ncRNA,SNP none,none {Y65A5A.17,Y65A5A.18,Y65A5A.8},{haw66288} 4621 CB6880_redo IV 16421149 1 C T 255 1.00 63 62 0 31 31 @TttTtTTTttTTTTtttTtTTTTTTtTTtTT point 0 nongenic -3459 upstream {Y10G11A.1} 4622 CB6880_redo IV 16426595 1 A T 116 1.00 63 14 0 4 4 @tTTt point 0 nongenic,nongenic -5594 upstream,1987 into {Y10G11A.2a},{Y10G11A.1} 4638 CB6880_redo IV 16485731 1 C T 255 1.00 63 62 0 29 29 @TTttTTTTTtTttttTtTTtTTTtTTtTT point 0 nongenic,nongenic -8580 upstream,2976 into {Y51H4A.1},{Y51H4A.3} 4639 CB6880_redo IV 16533636 1 T A 255 1.00 63 62 0 26 26 @AAaaaAaaaAaAaAAaAAaAAAaaaA point 0 missense,SNP TTT->TTA[Phe->Leu],none {Y51H4A.6},{haw66558} 4640 CB6880_redo IV 16553049 1 G A 21 6.00 63 2 0 5 5 @AAcCC point 0 nongenic -10196 upstream {Y51H4A.7.1} 4642 CB6880_redo IV 16571342 1 A C 3 2.31 63 2 1 5 6 @,gcccc point 0 nongenic -28489 upstream {Y51H4A.7.1} 4643 CB6880_redo IV 16571344 1 G C 3 2.12 63 2 3 4 7 @,c.ccc. point 0 nongenic -28491 upstream {Y51H4A.7.1} 4651 CB6880_redo IV 16586854 1 C G 12 1.00 63 2 0 4 4 @gggg point 0 nongenic -8349 upstream {Y51H4A.8} 4652 CB6880_redo IV 16586856 1 C G 12 1.00 63 12 0 4 4 @gggg point 0 nongenic -8351 upstream {Y51H4A.8} 4653 CB6880_redo IV 16602057 1 C T 255 1.00 63 62 0 28 28 @tTtTTttTTTTTtTTTtTTTtttttTTT point 0 missense GGA->AGA[Gly->Arg] {Y51H4A.9} 4654 CB6880_redo IV 16615929 1 C G 3 5.81 63 0 2 4 6 @G.GG.g point 0 nongenic,nongenic -10256 upstream,-13194 upstream {Y51H4A.10},{Y51H4A.9} 4657 CB6880_redo IV 16619779 1 T A 67 1.00 63 62 4 9 13 @AaaaaAAAa.,., point 0 nongenic,nongenic -17044 upstream,-6406 upstream {Y51H4A.9},{Y51H4A.10} 4658 CB6880_redo IV 16619813 1 C G 255 1.00 63 62 0 16 16 @gGgGGgGggGgGGGgg point 0 SNP none {haw66710,snp_Y51H4A[11]} 4659 CB6880_redo IV 16630143 1 C T 255 1.00 63 62 0 19 19 @TtttTttTtTtTttTTtTt point 0 nongenic -736 upstream {Y51H4A.32} 4660 CB6880_redo IV 16646588 1 T A 104 1.00 63 62 0 4 4 @aAaa point 0 SNP none {haw66770} 4662 CB6880_redo IV 16663821 1 C T 255 1.00 63 62 0 41 41 @ttTttttttTttTtTttTtTttTtTtTttTttttttTtttt point 0 missense GCA->ACA[Ala->Thr] {Y51H4A.16} 4663 CB6880_redo IV 16705504 1 T G 3 1.00 63 12 1 4 5 @G.cgg point 0 nongenic,nongenic,nongenic -15168 upstream,-19858 upstream,7468 into {Y51H4A.22},{Y51H4A.21},{Y51H4A.25a.1} 4667 CB6880_redo IV 16759409 1 T A 3 1.12 63 2 3 6 9 @,a..acaaa point 0 nongenic -13306 upstream {Y43D4A.2} 4668 CB6880_redo IV 16759411 1 G A 3 1.12 63 2 3 6 9 @,aa.aac.a point 0 nongenic -13308 upstream {Y43D4A.2} 4669 CB6880_redo IV 16759413 1 A C 3 1.19 63 2 3 7 10 @,.c.cccccc point 0 nongenic -13310 upstream {Y43D4A.2} 4670 CB6880_redo IV 16760578 1 C T 255 1.19 63 62 0 30 30 @ttTtTTTTTTTtTtTTtttttTTtttTTtt point 0 SNP none {haw66850} 4671 CB6880_redo IV 16786381 1 G T 255 1.00 63 62 0 29 29 @ttttTTTtTtTTTTttttTtTtttTTtTT point 0 SNP none {haw66890} 4672 CB6880_redo IV 16848636 1 G A 12 1.00 63 62 4 6 10 @,...aAaaaA point 0 SNP none {haw67023} 4673 CB6880_redo IV 16848787 1 C T 255 1.00 63 62 0 15 15 @TtTtTttTTTTTTtT point 0 nongenic,nongenic,nongenic 1001 into,347 into,621 into {Y116A8A.9.2},{Y116A8A.9.3},{Y116A8A.9.1} 4674 CB6880_redo IV 16848870 1 A C 255 8.00 63 62 0 16 16 @ccCcCCccCCCCcccc point 0 nongenic,nongenic,nongenic 1084 into,430 into,704 into {Y116A8A.9.2},{Y116A8A.9.3},{Y116A8A.9.1} 4684 CB6880_redo IV 16939349 1 T G 255 1.00 63 62 0 30 30 @GGggGgGGGGGggGGGGGGgGggGGGGGgG point 0 SNP none {haw67104} 4686 CB6880_redo IV 16945230 1 A G 112 1.50 63 62 10 25 35 @GGGG.gg.GGGGGG.GG.g,gGg..G,gGggGG,. point 0 nongenic,nongenic,nongenic -1854 upstream,-6161 upstream,1583 into {Y116A8C.12.1,Y116A8C.12.2},{Y116A8C.10b.2},{Y116A8C.9} 4687 CB6880_redo IV 16951181 1 G C 32 1.00 63 62 4 7 11 @C,C,.cccc.c point 0 nongenic 1158 into {Y116A8C.13} 4688 CB6880_redo IV 17003732 1 T A 195 1.00 63 62 0 10 10 @aAAAaAaAAa point 0 nongenic,nongenic -1077 upstream,7993 into {Y116A8C.16b},{Y116A8C.16a} 4690 CB6880_redo IV 17006135 1 A C 21 1.00 63 12 2 4 6 @.ccc.c point 0 nongenic,nongenic 1326 into,8723 into {Y116A8C.16b},{Y116A8C.16a} 4691 CB6880_redo IV 17086649 1 T C 255 1.00 63 62 0 22 22 @CccccCcCCcCcCCccccCCcc point 0 missense CAT->CGT[His->Arg] {Y116A8C.26a} 4695 CB6880_redo IV 17107805 1 C T 255 1.06 63 62 0 31 31 @ttTTtTttTTtTttttTtTttTtTtTttttT point 0 nongenic,nongenic -4135 upstream,3133 into {Y116A8C.30a},{Y116A8C.32} 4702 CB6880_redo IV 17241269 1 C T 255 1.00 63 62 0 42 42 @TttTtTttTTTTttTTtttTtttTTttTttttTTtttttttT point 0 nongenic,nongenic,nongenic -10258 upstream,-4282 upstream,540 into {Y116A8B.5},{ZK550.2},{ZK550.1} 4703 CB6880_redo IV 17339965 1 C T 255 1.00 63 62 0 37 37 @TtTttTtTttTTtTtttttTTtTtTttttTTTttTtT point 0 silent GTG->GTA[Val->Val] {C49C3.9} 4711 CB6880_redo IV 17491300 1 G A 255 1.00 63 62 0 35 35 @aaaAaAAAAaAaaAaAAaAAAaAaaaaaaaaaaAa point 0 SNP none {haw67744} 4712 CB6880_redo IV 17491319 1 C T 255 1.00 63 62 0 41 41 @ttTtTTtTTTtTttttttttttTtTTtTTttTtttTTttTt point 0 SNP none {haw67745} 4713 CB6880_redo IV 17492346 1 G A 36 1.00 63 28 1 3 4 @aaa, point 0 nongenic -1893 upstream {4R79.1a} 6938 CB6880_redo MtDNA 5079 1 G A 255 1.00 63 62 2 253 255 @AAAAAAAAaaaaaaaaaaAAAAAAAAAAAAAAaaaaaaaAAAAAAAAAAAaaaaaaaaAAAAAAAAAAAAAAAAAaaaaaaaAAAAAAAAAAAAAaaaa point 0 silent GGG->GGA[Gly->Gly] {MTCE.21} 6939 CB6880_redo MtDNA 5494 1 C T 255 1.00 63 62 0 255 255 @TTtttttttttTTttttttTTTTTTTtttttTTTTTTTtttttttttttTTTTTttttttTTTTtttttttTTTTTTTTtttttttTTTTTTTTTTttt point 0 silent CTA->TTA[Leu->Leu] {MTCE.21} 6940 CB6880_redo MtDNA 8429 1 A G 255 1.00 63 62 0 255 255 @GGGGGGGGGGGggggggggggGGGGGGGGGGGGGGGGGggggggGGGGGGGGGGGGGGGGGGggggggggggggggggggggGGGGGGGGGGggggggg point 0 silent,three_prime_UTR GTA->GTG[Val->Val],none {MTCE.26},{MTCE.25} 6941 CB6880_redo MtDNA 12998 1 C T 255 1.00 63 62 0 255 255 @TTttttttttttTTttttttTttttttTTTTTTttttTTTtttttttttttttttttttttttttTTtttttttttttttTtttttttttttttttttt point 0 silent,three_prime_UTR GGC->GGT[Gly->Gly],none {MTCE.35},{MTCE.34} 4718 CB6880_redo V 705 1 C T 173 1.88 63 62 2 23 25 @TTTTTtT.tttT.ttTTTTTTTttT point 0 nongenic -774 upstream {cTel3X.1} 4719 CB6880_redo V 721 1 C G 255 1.62 63 62 1 19 20 @.ggGGGGGGGggGGGgGggG point 0 nongenic -758 upstream {cTel3X.1} 4720 CB6880_redo V 46068 1 G C 222 1.00 63 62 0 12 12 @cccCCCCcCccc point 0 nongenic,nongenic -2853 upstream,602 into {B0348.1},{B0348.2} 4721 CB6880_redo V 46069 1 T G 219 1.00 63 62 0 11 11 @ggGGGGgGggg point 0 nongenic,nongenic -2852 upstream,603 into {B0348.1},{B0348.2} 4722 CB6880_redo V 46079 1 C A 158 1.00 63 62 0 7 7 @aAaaaAA point 0 nongenic,nongenic -2842 upstream,613 into {B0348.1},{B0348.2} 4723 CB6880_redo V 46135 1 C G 255 1.00 63 62 0 23 23 @gggggGGGGGGgggggGGGGgGG point 0 SNP none {haw67774} 4724 CB6880_redo V 64864 1 T A 255 1.50 63 62 1 34 35 @aaAAAaaaAaaAAAAAAAAA,aAaaaAAaAAAAAA point 0 nongenic,nongenic -360 upstream,301 into {Y38C9B.3},{F56E10.2} 4725 CB6880_redo V 74393 1 G A 255 1.00 63 62 0 31 31 @AaaaaaaaaAAaAaAAAaaaAaAAaAAAaaa point 0 nongenic -3386 upstream {F56E10.2} 4726 CB6880_redo V 198833 1 A T 255 1.00 63 62 0 19 19 @tttTTTtTTTtTTTTtTtT point 0 nongenic,nongenic -3894 upstream,1855 into {DC2.8},{Y108G3AL.7} 4728 CB6880_redo V 265179 1 C A 255 3.50 63 62 0 229 229 @AAAAAaAAaaAAAAAaAaaAAAAAAAAAaaAAAAAAAAAAAAAAAaAAAAAAAAAaAAAAAAAAAAAAAAAAAAaaAAAAAAAAAAAAAAAaAAAAAAA point 0 nongenic,nongenic -3127 upstream,-7197 upstream {Y58G8A.1},{R02C2.4} 4729 CB6880_redo V 265207 1 C A 255 1.38 63 62 0 255 255 @AAAAAAAAaAAAAAAaAAAAAAAAAaAAAAAAAAAAAAAAAAAaAAAAAAAAAAAAAAAAAAAAAAaAAAAAAAAAAAAAAAAAAAAAAAAAAAaaAAA point 0 SNP none {haw67964} 4730 CB6880_redo V 265223 1 T C 255 2.94 63 62 263 -8 255 @CCCCCCCC,C,CCCcc,CC,CCCCCCCCC,CCcC,CCC,,CCCCCCc.cC,CCCC,CCCCCCCCCCCCCcCC,CCC,CCCCCCCC,,C,.CCCC,CCCC point 0 nongenic,nongenic -3083 upstream,-7241 upstream {Y58G8A.1},{R02C2.4} 4731 CB6880_redo V 265542 1 G A 62 3.56 63 62 81 132 213 @,,A,aaaaa.TTTAAa..,,T..aa.a,,A....a..,,AA,..a..t..at.a.....,,t..,Tt...a.A,,A,a.a.AaaA,AAT.aAA,,aa.A point 0 SNP none {haw67966} 4732 CB6880_redo V 265892 1 G T 25 5.38 30 2 33 97 130 @CCACTACTTCTctTTCTTTCCCTctTACCTctTTTTtcC,ttAC,ATtttTCTT,tTtcTTtCTTCCtcccCCCcTCAC,cccC.C,c.c,,c..cT.c point 0 nongenic,nongenic -2414 upstream,-7910 upstream {Y58G8A.1},{R02C2.4} 4733 CB6880_redo V 265967 1 A T 3 5.69 0 16 20 175 195 @tttgtttttttttTttttttttttgtttgtttttt,ttTg,.ttttttt,tttttttttt.tgtttt,ttttttttttttttttt,ttttttttttttt point 0 nongenic,nongenic -2339 upstream,-7985 upstream {Y58G8A.1},{R02C2.4} 4737 CB6880_redo V 266569 1 A T 3 6.44 0 2 20 31 51 @.t,TTT.TTTTTT.TTTtTT.,tTTtt,TT,TtTC.,...TtT..T...,, point 0 nongenic,nongenic -1737 upstream,-8587 upstream {Y58G8A.1},{R02C2.4} 4739 CB6880_redo V 266750 1 G T 3 5.94 0 0 47 75 122 @CTTTC.ttT,Ttt.T.t.,CCTCTCTatTTCAttttCCCt.tTC,tCTACTtt.ttt,T,.tttttTtt.,,CCc,T.C,CTC..ACT,C,..TtTTT. point 0 nongenic,nongenic -1556 upstream,-8768 upstream {Y58G8A.1},{R02C2.4} 4740 CB6880_redo V 266965 1 T C 3 6.12 0 0 13 30 43 @,,cccc.c,cCcc,cc.,c,C.ccccC.Cccc,ccC.ccc,cc point 0 nongenic,nongenic -1341 upstream,-8983 upstream {Y58G8A.1},{R02C2.4} 4741 CB6880_redo V 267024 1 A C 3 3.69 0 6 168 87 255 @c..cc,,cc....,,,C.c..,,,,,.....C,,,,....,,...c.C.,c,,C,.c,,,cc.c.,,,.CCc.,C,cc.c.cc,C.c.,,,CcCC.C,, point 0 nongenic,nongenic -1282 upstream,-9042 upstream {Y58G8A.1},{R02C2.4} 4743 CB6880_redo V 306925 1 G A 186 1.94 63 62 0 13 13 @AAAAAAAAAAAAA point 0 nongenic,nongenic,nongenic -2210 upstream,1487 into,494 downstream {F33E11.3},{F33E11.6b},{F33E11.6a} 4751 CB6880_redo V 323686 1 G A 255 1.00 63 62 0 35 35 @AAaaAAAAaaAAaaaAaAAaaaAAaaAaAAAaAAa point 0 nongenic,nongenic 111 downstream,56 downstream {Y39D8C.1},{F33E11.1} 4752 CB6880_redo V 361876 1 A G 255 1.00 63 62 0 14 14 @GGgGggGggGgggg point 0 SNP none {haw68038} 4757 CB6880_redo V 469630 1 C G 3 1.88 28 0 3 6 9 @TGGGG.g.. point 0 nongenic,nongenic -1068 upstream,-3259 upstream {M02H5.12},{M02H5.2} 4758 CB6880_redo V 469632 1 T C 4 2.38 28 0 3 10 13 @CGCCCcgcc,g,, point 0 nongenic,nongenic -1070 upstream,-3257 upstream {M02H5.12},{M02H5.2} 4763 CB6880_redo V 907030 1 C T 255 1.00 63 62 0 30 30 @TttTTTtTTTtttTtTtttTtTTATtTTTt point 0 SNP none {haw69383} 4766 CB6880_redo V 931553 1 C A 8 1.00 63 2 3 6 9 @,,,AaAaAa point 0 nongenic -4846 upstream {Y50D4C.2} 4767 CB6880_redo V 941778 1 T C 33 1.00 63 62 2 5 7 @CCCC,C. point 0 nongenic 2279 into {Y50D4C.3} 4768 CB6880_redo V 966382 1 G A 255 1.00 63 62 0 46 46 @AAAAAAAaaaAaaAaAAAAAaAAAaAAaaaaaaaaaaaaAAAaaAA point 0 nongenic,nongenic -1579 upstream,-16153 upstream {Y50D4C.4},{Y50D4C.1a} 4770 CB6880_redo V 1093641 1 C T 255 1.00 63 62 0 34 34 @TttTtttttTtTTTTttttTTtTTtTtttTTttt point 0 missense TCG->TTG[Ser->Leu] {Y50D4B.4} 4772 CB6880_redo V 1132919 1 G A 255 1.00 63 62 0 38 38 @AAAAaaaaaaAAAaAAaAAAAaaAAAAaaAaaAAaAaA point 0 silent TAC->TAT[Tyr->Tyr] {W07B8.5.1,W07B8.5.2} 4784 CB6880_redo V 1199377 1 T G 12 1.00 63 2 0 4 4 @GGGG point 0 nongenic -7933 upstream {Y50D4A.5} 4785 CB6880_redo V 1206527 1 G A 255 1.00 63 62 0 25 25 @aAAaaaaaaAaaAaaaaaaaaaaaa point 0 nongenic -783 upstream {Y50D4A.5} 4787 CB6880_redo V 1212661 1 C T 13 1.00 63 0 0 5 5 @ttttt point 0 nongenic 4771 into {Y50D4A.1a,Y50D4A.1b} 4789 CB6880_redo V 1238625 1 G A 255 1.00 63 62 0 19 19 @aAaaaAaAAaaaaaaaAAA point 0 nongenic,nongenic -21485 upstream,-3177 upstream {C39F7.1},{C39F7.2a,C39F7.2b} 4791 CB6880_redo V 1275710 1 C G 64 1.00 63 16 0 6 6 @GggGGG point 0 nongenic,nongenic,nongenic 298 into,711 downstream,821 downstream {Y75B7B.2},{ZK1005.1b},{ZK1005.1a} 4792 CB6880_redo V 1275711 1 G C 33 1.00 63 16 0 5 5 @ccCCC point 0 nongenic,nongenic,nongenic 297 into,710 downstream,820 downstream {Y75B7B.2},{ZK1005.1b},{ZK1005.1a} 4796 CB6880_redo V 1567596 1 C T 255 1.00 63 62 0 46 46 @TTTTTTtTTTTtTttTTTtTTTttTTtTTTTtttTTttTTTTTtTT point 0 nongenic -10094 upstream {F16B4.8} 4798 CB6880_redo V 1624282 1 C T 255 1.00 63 62 0 30 30 @ttTTTTTTTtTTttTtTTTTTTTTTTttTT point 0 five_prime_UTR,silent none,AGG->AGA[Arg->Arg] {Y46H3D.5a.1,Y46H3D.5a.2},{Y46H3D.5b} 4799 CB6880_redo V 1637978 1 G T 109 5.94 56 62 50 59 109 @,,,TT,TTtTTTT,.tTT,,T,,TT,TT.tt.,,T..Ttt,TTTTTtT.TTTT,TTTttTT,TTT,t,TTt,TTTTT.T,TT,,.,,,.t,..,,,,., point 0 nongenic,nongenic -2330 upstream,1305 into {Y46H3D.2},{Y46H3D.3} 4800 CB6880_redo V 1638167 1 T A 3 6.94 0 0 40 41 81 @,...A.,,.aaaaaa,AaAAaA,a.aAA..AaaAAa.AAAAA,AaaAAa,,.A,.AA,,.,...,a,,,.,,A,a.,,,a. point 0 nongenic,nongenic -2141 upstream,1116 into {Y46H3D.2},{Y46H3D.3} 4801 CB6880_redo V 1638680 1 G A 3 5.19 28 0 91 99 190 @..aaaAa..a,aA,,,A,aaAA,.AaA,A,A,aaA,,a,,a...,AAA...AAAA,,.AAA,AAA.a,AAAAaaaAAA..aAAAAa.,,T.,A,A,..A point 0 nongenic,nongenic -1628 upstream,603 into {Y46H3D.2},{Y46H3D.3} 4802 CB6880_redo V 1638746 1 G T 23 4.19 40 44 29 69 98 @TT,.tTtTTTTTT,TT,tTttTTTT,..TTT,T,,T,,t.,.TTT,t,,.ttTT.TTTTTTttTTTTTT,ttTTTttTTTTTT.TtTTTTt,.,,.,, point 0 nongenic,nongenic -1562 upstream,537 into {Y46H3D.2},{Y46H3D.3} 4803 CB6880_redo V 1638979 1 A G 255 2.94 63 62 65 190 255 @GGGGGgggggG,GGG.ggg,,G,,ggg.g.g.g,GGGGG.gggg.g..,,,,gg.ggg.gggg.g.gGGG,GGG,g.ggg.gggg..ggggGGGGG,GG point 0 nongenic,nongenic -1329 upstream,304 into {Y46H3D.2},{Y46H3D.3} 4804 CB6880_redo V 1712941 1 C T 14 6.69 0 14 0 4 4 @Tttt point 0 nongenic,nongenic -4302 upstream,1550 into {ZK697.5},{Y46H3C.1} 4808 CB6880_redo V 1714669 1 T C 213 2.25 63 62 5 14 19 @.....CCCcCCcccCCCcC point 0 nongenic,nongenic -2574 upstream,732 into {ZK697.5},{Y46H3C.1} 4812 CB6880_redo V 1724917 1 A G 3 1.00 63 0 0 4 4 @CGgg point 0 nongenic,nongenic -736 upstream,346 into {ZK697.4},{ZK697.13} 4815 CB6880_redo V 1724924 1 T G 6 1.00 63 6 1 3 4 @gg,g point 0 nongenic,nongenic -729 upstream,339 into {ZK697.4},{ZK697.13} 4816 CB6880_redo V 1764554 1 G C 3 1.00 63 34 3 3 6 @ccC,,, point 0 nongenic 749 into {Y46H3B.1} 4818 CB6880_redo V 2087218 1 A G 255 1.00 63 62 0 33 33 @GgGGggGgggGgGGGGgGGggggGgGgggGGgg point 0 missense,SNP GAT->GGT[Asp->Gly],none {F36F12.3,F36F12.3b},{pas13625} 4820 CB6880_redo V 2255011 1 G A 195 2.81 63 62 0 17 17 @AAAAAAAAAAAAAAAAA point 0 nongenic -407 upstream {F41B5.8} 4823 CB6880_redo V 2361210 1 C G 3 2.00 0 0 3 8 11 @GtA,GGGGG,. point 0 nongenic,nongenic 516 downstream,666 downstream {Y19D10A.10},{Y19D10A.6} 4825 CB6880_redo V 2361214 1 T A 3 2.00 0 0 1 4 5 @AAAA. point 0 nongenic,nongenic 512 downstream,670 downstream {Y19D10A.10},{Y19D10A.6} 4844 CB6880_redo V 2546540 1 T C 3 2.00 0 0 10 11 21 @.CCCC.GC.....c,cccc,. point 0 nongenic,nongenic 341 into,476 downstream {Y45G12C.4},{Y45G12C.5} 4855 CB6880_redo V 2578146 1 G C 26 1.00 63 30 0 4 4 @cCtt point 0 nongenic,nongenic -2725 upstream,244 into {C29G2.3},{C29G2.4} 4856 CB6880_redo V 2606211 1 T A 59 1.00 63 26 2 4 6 @aAAA., point 0 nongenic,nongenic,nongenic -2443 upstream,-3146 upstream,1372 into {F53E10.2a,F53E10.2b},{F53E10.6.1},{F53E10.3} 4887 CB6880_redo V 2886702 1 T C 81 1.88 63 62 14 23 37 @,,.,.....,,...cCcccCccCcccCcccCcccCcc point 0 nongenic,nongenic 277 downstream,487 downstream {F37B4.9},{F37B4.8} 4890 CB6880_redo V 3017813 1 A G 255 8.19 63 62 0 37 37 @ggGGggGGGGGGgGgGgGGGGGGgGGGgGGggGGGgG point 0 nongenic 546 downstream {K12D9.14} 7499 CB6880_redo V 3188016 0 X X -1000 -999.99 -1000 -1000 2 -1 1 @,,gg indel 4 nongenic -333 upstream {Y73C8B.4} 163781 CB6880_redo V 3212691 70 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered non-exonic, 2501 to 2571 bp into {K08D9.3} 4905 CB6880_redo V 3318043 1 C T 255 1.00 63 62 0 30 30 @TtttTTtTtTTtTTTtTttTTTtTTtTTtt point 0 nongenic,nongenic 162 downstream,17 downstream {F35F10.13},{F35F10.1} 4907 CB6880_redo V 3556390 1 A C 54 1.00 63 0 3 4 7 @CcCC.., point 0 nongenic,nongenic -1155 upstream,812 downstream {T24A6.18},{T24A6.19} 4931 CB6880_redo V 4139271 1 C G 10 1.00 63 14 2 3 5 @,,ggG point 0 nongenic,nongenic -146 upstream,460 downstream {Y45G5AL.2},{T05B4.1} 4932 CB6880_redo V 4164869 1 A C 255 1.00 63 62 0 36 36 @cCcCCcccccCccCCCccCCcCccCCCcccccCCCc point 0 missense ATT->CTT[Ile->Leu] {Y45G5AM.3} 4936 CB6880_redo V 4321387 1 T A 122 1.00 63 62 1 6 7 @aAaAaa. point 0 nongenic,nongenic,nongenic -2060 upstream,-5728 upstream,954 into {ZC132.9},{D2063.1},{R02D1.1} 4937 CB6880_redo V 4321389 1 A T 72 1.00 63 46 1 4 5 @tTtt. point 0 nongenic,nongenic,nongenic -2062 upstream,-5726 upstream,956 into {ZC132.9},{D2063.1},{R02D1.1} 4938 CB6880_redo V 4329455 1 A C 255 1.00 63 62 0 22 22 @CCCCcccCCcCCCCCCcCcCCC point 0 SNP none {haw75410} 4940 CB6880_redo V 4351933 1 T G 132 3.94 63 62 6 9 15 @gGGgGGGGG....., point 0 nongenic 2164 into {F32D1.3} 4941 CB6880_redo V 4383910 1 C T 255 1.00 63 62 0 29 29 @tTtTTttTTTtTtTTTttTttTTtttttt point 0 nongenic,nongenic -1541 upstream,40 downstream {F13A2.1},{F13A2.2} 4942 CB6880_redo V 4403207 1 T G 255 1.00 63 62 0 36 36 @gggGgGgGGGGgGGGGGGgGGGGGGGgGgGGgGGGg point 0 nongenic,nongenic,nongenic -1205 upstream,-4597 upstream,473 into {F13A2.5},{F13A2.8},{F13A2.6} 4943 CB6880_redo V 4447836 1 C G 212 1.62 63 62 0 14 14 @GGGGGgGgGGGgGg point 0 nongenic,nongenic -4760 upstream,2706 into {Y47D7A.16},{Y47D7A.14} 4944 CB6880_redo V 4461306 1 T A 255 1.00 63 62 0 25 25 @aaaAAaAAAAAAAAAaAAAaAAaAa point 0 nongenic,nongenic -10058 upstream,-6585 upstream {T08H10.3},{H22D07.1} 4946 CB6880_redo V 4495387 1 T G 3 1.00 63 2 2 2 4 @,,CG point 0 nongenic -2061 upstream {T28F12.2a.1,T28F12.2a.2,T28F12.2d.3,T28F12.2d.4,T28F12.2f,T28F12.2g.2} 4949 CB6880_redo V 4576946 1 C T 254 1.06 63 62 0 12 12 @tTtTTTTTtttT point 0 nongenic,nongenic,nongenic,nongenic,nongenic -15877 upstream,-3035 upstream,3154 into,3176 into,5818 into {Y61A9LA.1},{Y61A9LA.9},{Y61A9LA.3c},{Y61A9LA.3a},{Y61A9LA.3b} 4950 CB6880_redo V 4597289 1 A G 255 1.00 63 62 0 26 26 @GGGgGGGGggGGGgGGGggGGGGGGg point 0 SNP none {haw75689} 4951 CB6880_redo V 4704362 1 T A 54 1.00 63 62 2 4 6 @,.Aaaa point 0 nongenic,nongenic -3896 upstream,-6551 upstream {ZC266.1},{F39G3.6} 163782 CB6880_redo V 4909242 101 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered non-exonic, 385 to 486 bp into {H23N18.1} 4952 CB6880_redo V 4914028 1 G T 38 1.00 63 24 1 3 4 @.TTT point 0 nongenic,nongenic -1661 upstream,982 into {H23N18.5},{H23N18.6} 4953 CB6880_redo V 4914029 1 T A 37 1.00 63 38 1 3 4 @.AAA point 0 nongenic,nongenic -1662 upstream,983 into {H23N18.5},{H23N18.6} 4954 CB6880_redo V 4920740 1 C T 255 1.00 63 62 0 31 31 @TttttTTttTTtttTtTTTTttttTTTtTtt point 0 missense GCA->ACA[Ala->Thr] {C02E7.8} 4955 CB6880_redo V 4997708 1 C T 255 1.00 63 62 0 25 25 @TTTTTTtTtTTTtttTTttTttTTT point 0 nongenic,nongenic,nongenic -2658 upstream,-3768 upstream,676 into {C13D9.8},{C13D9.3},{C13D9.9} 4957 CB6880_redo V 5015546 1 T C 12 1.00 63 0 0 4 4 @CCCC point 0 nongenic,nongenic -3662 upstream,501 downstream {K11D12.3a},{C13D9.1} 4966 CB6880_redo V 5084742 1 G A 4 2.00 0 26 4 13 17 @AaaaaA,A,AA,.AAaa point 0 missense CCG->CTG[Pro->Leu] {Y58A7A.4} 4970 CB6880_redo V 5124714 1 T A 212 1.00 63 62 0 25 25 @AGAaaAGAAaaaaaAaAaaaaaaaa point 0 SNP none {haw76186} 4971 CB6880_redo V 5148515 1 C T 127 2.62 34 62 23 29 52 @TTT,TTtTtt,t.,t.TTT,T.,T.Tt,..t,.tt.,.T.tTt.T,Tt..t. point 0 nongenic,nongenic -2649 upstream,1935 into {F14F9.1},{F14F9.6} 4973 CB6880_redo V 5265822 1 C T 255 1.06 63 62 0 54 54 @TTTtTtTTTTTttTttTtTTtTtTTtTTTTTTttTTTTTTttTtTttTTTtTTt point 0 nongenic,nongenic,nongenic -156 upstream,-1983 upstream,-61 upstream {B0238.8.2},{B0238.12},{B0238.8.1} 4981 CB6880_redo V 5284688 1 T C 254 3.94 63 62 30 225 255 @CCCC..Cc.c.,c.,.ccCCcC.,,,,CC,C,CCCCC,CCCcccccCCCCccccCCCCC,,CCCCCC,CCCCCcccccc,CCCCCCCCCCACCccccc. point 0 nongenic -6602 upstream {B0238.9} 5004 CB6880_redo V 5755509 1 G T 75 1.00 63 62 1 5 6 @ttttT. point 0 missense CAG->AAG[Gln->Lys] {K09H11.11} 5007 CB6880_redo V 5825204 1 C T 255 1.00 63 62 0 32 32 @ttTtTTtttTTTTtTtttTttTTTtttttTTt point 0 nongenic,nongenic -12063 upstream,-1611 upstream {ZC250.4},{F26F12.7.1,F26F12.7.2} 5008 CB6880_redo V 5939656 1 T G 255 1.00 63 62 0 18 18 @gGGGGGGgGggGGGGGgg point 0 nongenic,nongenic -2881 upstream,-350 upstream {M03F8.5},{M03F8.3a,M03F8.3b} 5009 CB6880_redo V 5968876 1 C T 255 1.00 63 62 0 36 36 @TtTTtTTtTTttTttTTTTTtTtTTtTTtTtTTtTT point 0 missense ACA->ATA[Thr->Ile] {C10F3.4a,C10F3.4b} 5010 CB6880_redo V 6048318 1 C A 255 1.00 63 62 0 27 27 @aaAAaaAaAaAaaaAAAAaaAaAAaAa point 0 SNP,three_prime_UTR none,none {haw77329},{R01B10.5.1} 5011 CB6880_redo V 6052074 1 T C 255 1.00 63 62 0 18 18 @CCCCcCCCCCCCccCCcc point 0 SNP none {haw77333} 5040 CB6880_redo V 6091304 1 T A 16 8.25 0 16 0 11 11 @AAAAAAAAAAA point 0 nongenic,nongenic -21252 upstream,-4706 upstream {Y38A10A.4},{Y38A10A.7} 5043 CB6880_redo V 6146070 1 C T 255 1.00 63 62 0 45 45 @TttTTtTTtTttTTttTtTTTTtTTTTTTtTtTtttTTtTttTtt point 0 missense GAC->AAC[Asp->Asn] {W06H8.8e.1,W06H8.8e.2,W06H8.8f,W06H8.8g} 5044 CB6880_redo V 6172858 1 T C 3 3.81 0 2 3 43 46 @CC.cCC.CCCCcCCCC,CCCCCCcCCCcCCCCCCCCCcCCcCCCCC point 0 silent CAA->CAG[Gln->Gln] {W06H8.8d,W06H8.8e.1,W06H8.8e.2,W06H8.8f,W06H8.8g} 5045 CB6880_redo V 6177079 1 C A 64 3.12 50 62 7 10 17 @aaaaaaa,aA,,,,a,, point 0 silent GTG->GTT[Val->Val] {W06H8.8d,W06H8.8e.1,W06H8.8e.2,W06H8.8f,W06H8.8g} 5047 CB6880_redo V 6179154 1 C T 3 9.31 0 2 9 13 22 @,.,TTt,TTT..,TTT,TT,TT point 0 missense GCA->ACA[Ala->Thr] {W06H8.8d,W06H8.8e.1,W06H8.8e.2,W06H8.8f,W06H8.8g} 5048 CB6880_redo V 6179973 1 C T 3 8.38 0 2 8 13 21 @..tttT,,,TT,TTt,TT.tt point 0 missense GCA->ACA[Ala->Thr] {W06H8.8d,W06H8.8e.1,W06H8.8e.2,W06H8.8f,W06H8.8g} 5049 CB6880_redo V 6179975 1 A T 3 7.88 0 2 8 13 21 @.tttT,,,TT,TTt,TT.tt. point 0 missense CTT->CAT[Leu->His] {W06H8.8d,W06H8.8e.1,W06H8.8e.2,W06H8.8f,W06H8.8g} 5050 CB6880_redo V 6262914 1 C T 255 1.00 63 62 0 66 66 @TTTTttTTtTtTtttttTtTtTTtttTTTtTTtATTtttttTTtttTtTtTTTtTTTtttttTTtt point 0 missense GCA->ACA[Ala->Thr] {K08B12.5.1,K08B12.5.2} 5054 CB6880_redo V 6302463 1 A G 255 1.50 63 62 0 36 36 @GGGggGGggGGgGgggGgGGggGGGGggGGgggGgg point 0 nongenic,nongenic -1318 upstream,-3026 upstream {K12B6.1},{K12B6.7} 5055 CB6880_redo V 6450158 1 G T 255 1.00 63 62 0 28 28 @TttTtTTtTTttttttTTtTTTttTTtt point 0 missense GTT->TTT[Val->Phe] {T05H4.2} 5056 CB6880_redo V 6464437 1 C T 255 1.00 63 62 0 27 27 @TtTtTttttTTtTTTTTtTtTtTtTTT point 0 nongenic -610 upstream {W01A11.3a,W01A11.3b.2,W01A11.3c} 5057 CB6880_redo V 6480845 1 C T 255 1.00 63 62 0 29 29 @TTTTTtTtTtttTTtTTttttttTtTtTt point 0 five_prime_UTR,missense none,TCT->TTT[Ser->Phe] {W01A11.3c},{W01A11.3a,W01A11.3b.1,W01A11.3b.2} 5065 CB6880_redo V 6732379 1 C T 255 1.00 63 62 0 15 15 @tttTTtttTTTTttT point 0 nongenic,nongenic,nongenic -12642 upstream,-701 upstream,449 into {T25F10.3.1},{ZC487.4},{ZC487.5} 5066 CB6880_redo V 6889636 1 C G 255 1.00 63 62 0 26 26 @gGgGGGGggGgGGgGGgGGgggGGGg point 0 silent GCC->GCG[Ala->Ala] {K11C4.3b} 5067 CB6880_redo V 6889637 1 G C 251 1.00 63 62 0 25 25 @CcCCCCccCcCCcCCcCCcccCCCc point 0 missense GCA->CCA[Ala->Pro] {K11C4.3b} 5069 CB6880_redo V 6941197 1 T C 3 5.31 0 2 8 30 38 @,c.CC,ccCcCC,C,CCcccCCCc,cCCCccCC.cCG, point 0 nongenic -5353 upstream {Y57E12B.3} 5078 CB6880_redo V 6956711 1 T C 255 1.00 63 62 0 23 23 @CcCccCCCcCCcccCCcCCCcCc point 0 five_prime_UTR,missense none,CTA->CCA[Leu->Pro] {T07H8.4f.2,T07H8.4f.3},{T07H8.4a,T07H8.4b,T07H8.4c,T07H8.4d.1,T07H8.4d.2,T07H8.4h.1,T07H8.4h.2,T07H8.4i,T07H8.4j} 5079 CB6880_redo V 6956743 1 C G 255 1.00 63 62 0 23 23 @GgGggggGggGGgggGGggGGGg point 0 five_prime_UTR,missense none,CGC->GGC[Arg->Gly] {T07H8.4f.1,T07H8.4f.2,T07H8.4f.3},{T07H8.4a,T07H8.4b,T07H8.4c,T07H8.4d.1,T07H8.4d.2,T07H8.4h.1,T07H8.4h.2,T07H8.4i,T07H8.4j} 5080 CB6880_redo V 6956744 1 G C 255 1.00 63 62 0 23 23 @AcCccccCccCCcccCCccCCCc point 0 five_prime_UTR,missense none,CGC->CCC[Arg->Pro] {T07H8.4f.1,T07H8.4f.2,T07H8.4f.3},{T07H8.4a,T07H8.4b,T07H8.4c,T07H8.4d.1,T07H8.4d.2,T07H8.4h.1,T07H8.4h.2,T07H8.4i,T07H8.4j} 5081 CB6880_redo V 6968369 1 C T 255 1.00 63 62 0 46 46 @TtTTTttTttTttTTTttTTtTTtTttTttTTTTtttTTTTttTTt point 0 missense GAA->AAA[Glu->Lys] {T07H8.6} 5082 CB6880_redo V 6972719 1 A T 25 1.00 63 44 2 2 4 @,.TT point 0 nongenic,nongenic,nongenic -2609 upstream,-3609 upstream,413 into {T07H8.6},{T07H8.1},{T07H8.3} 5084 CB6880_redo V 7059591 1 C T 255 1.00 63 62 0 38 38 @tTtTtTttTtTtTtttttttTTtTtTttTTttTTTTtT point 0 missense CGA->CAA[Arg->Gln] {Y57E12AL.5} 5092 CB6880_redo V 7122961 1 C T 255 1.00 63 62 0 30 30 @tttttTtTtGTtTtTtTttTTtttTtTttT point 0 nongenic,nongenic -484 upstream,-677 upstream {T01C4.5},{T01C4.1} 5095 CB6880_redo V 7245105 1 C G 255 1.00 63 62 0 35 35 @ggGGggggggGgGGgGGgggGGGgGGGGggGGggG point 0 SNP none {haw78505} 5096 CB6880_redo V 7246144 1 T A 255 1.00 63 62 0 31 31 @AAaaAaAAAAAaAaAaaaaAaAaAAaAaAaa point 0 nongenic,nongenic,nongenic,nongenic 1126 into,1136 into,889 into,996 into {C05C8.7.3},{C05C8.7.1},{C05C8.7.2},{C05C8.7.4} 5099 CB6880_redo V 7366374 1 G A 255 1.00 63 62 0 32 32 @AAAaAAAaAaAAAAaaAAaaAAAAaaAaaAaA point 0 nongenic,nongenic -4440 upstream,467 downstream {C03G6.3},{C03G6.5} 7510 CB6880_redo V 7386791 0 X X -1000 -999.99 -1000 -1000 2 0 2 @.,aAa indel 0 nongenic -691 upstream {C03G6.19} 5100 CB6880_redo V 7403427 1 A G 255 1.00 63 62 0 41 41 @gggGgGgGGGGGGggGgggGGGGGgGGGgGgGGgggGgGGg point 0 silent,SNP GAA->GAG[Glu->Glu],none {R13D7.3},{uCE5-1535} 5102 CB6880_redo V 7430646 1 C T 255 1.00 63 62 0 30 30 @TTTTtTTTttTttTTTttTTTTTTttTTtT point 0 premature_stop TGG->TGA[Trp->stop] {F18E3.6} 5103 CB6880_redo V 7492602 1 C T 255 1.00 63 62 0 30 30 @TTttTTtTTTTtttttTtTTttTttTTTtt point 0 missense GAA->AAA[Glu->Lys] {C18B10.2} 5104 CB6880_redo V 7496326 1 C T 255 1.00 63 62 0 26 26 @TttTTtTtTTttTTTTTttTttTTTt point 0 nongenic,nongenic -1055 upstream,-1394 upstream {C18B10.1},{C04F2.1} 5105 CB6880_redo V 7546600 1 G A 255 1.00 63 62 0 25 25 @AAaaaAAAAAaAAAaAAaaaAaAAA point 0 missense,SNP CAC->TAC[His->Tyr],none {C54F6.14},{uCE5-1545} 5106 CB6880_redo V 7596030 1 C T 255 1.00 63 62 0 28 28 @ttTTTTTTTTtTTtTTTttTTTtttTtt point 0 nongenic 361 into {C50E3.7} 5107 CB6880_redo V 7787491 1 C T 255 1.00 63 62 0 34 34 @TTTTtTTTtttTTtTttTTtTtTTttTTtttTtt point 0 premature_stop CAA->TAA[Gln->stop] {C26F1.1a,C26F1.1b} 5108 CB6880_redo V 7844641 1 C T 255 1.00 63 62 0 35 35 @TtTTTTtTTTTtTTTTTtttTttttttTtTTtTTt point 0 missense GTT->ATT[Val->Ile] {C37C3.8a.1,C37C3.8a.2,C37C3.8a.3,C37C3.8b} 5109 CB6880_redo V 7860214 1 C A 255 2.56 63 62 0 26 26 @AAaaaaAAAaaaaaaAaAaaaaaAaa point 0 nongenic,nongenic 323 downstream,510 downstream {C37C3.1a},{C37C3.1b} 5110 CB6880_redo V 7860248 1 A T 234 5.69 63 62 0 13 13 @tTttttTtTtttt point 0 nongenic,nongenic 357 downstream,544 downstream {C37C3.1a},{C37C3.1b} 5111 CB6880_redo V 7896034 1 G T 255 1.00 63 62 0 34 34 @TttTTTTtTtttTtTtTTtTtttTttTttTtttT point 0 nongenic,nongenic,nongenic -29728 upstream,425 into,545 downstream {Y97E10B.4},{F40A3.7},{F40A3.1} 5112 CB6880_redo V 7897853 1 C T 255 1.00 63 62 0 21 21 @TTttTTttTTTtTtttTTTtT point 0 nongenic,nongenic -27909 upstream,1989 into {Y97E10B.4},{F40A3.7} 5120 CB6880_redo V 7942198 1 C T 255 1.00 63 62 0 27 27 @ttTttTtttTtTttTttTttttttttt point 0 nongenic,nongenic -1660 upstream,-1834 upstream {Y97E10B.1},{Y97E10B.10} 5121 CB6880_redo V 7967155 1 C T 255 1.00 63 62 0 23 23 @ttTTtTTtTTtTttttttTtTtT point 0 nongenic -1345 upstream {F26D11.10} 5125 CB6880_redo V 7996115 1 C T 255 1.00 63 62 0 39 39 @tttTtttTTtttttTTttttTtttTTttTTtttttTTtT point 0 nongenic,nongenic,nongenic -1468 upstream,-42 upstream,-65 upstream {Y97E10AM.1},{Y97E10AR.2a},{Y97E10AR.2b} 5126 CB6880_redo V 7998062 1 C T 255 1.00 63 62 0 37 37 @TtttTtttTtTTtTTtTTTTtTTtTTTTTttTTTTtt point 0 missense CAT->TAT[His->Tyr] {Y97E10AR.2a,Y97E10AR.2b} 5127 CB6880_redo V 8056170 1 G T 153 6.38 63 62 0 13 13 @tttttttcttttt point 0 nongenic,nongenic -235 upstream,165 downstream {ZC513.1},{ZC513.2} 5131 CB6880_redo V 8129307 1 C T 255 1.00 63 62 0 25 25 @ttTTtTTtTttttttttttttTTtT point 0 missense GGA->GAA[Gly->Glu] {D1014.8} 5133 CB6880_redo V 8185497 1 C T 255 1.00 63 62 0 33 33 @TTtttTtttTttTtttTttTtttttTtTttttt point 0 missense GCA->GTA[Ala->Val] {F20D6.3} 7512 CB6880_redo V 8233594 0 X X -1000 -999.99 -1000 -1000 3 -1 2 @,,,c indel 0 nongenic,nongenic,nongenic -275 upstream,-4737 downstream,-646 downstream {C16D9.2c},{C16D9.2a},{C16D9.2b} 5134 CB6880_redo V 8233595 1 A C 4 1.00 63 26 2 2 4 @CC.. point 0 SNP none {uCE5-1720} 5135 CB6880_redo V 8276295 1 C T 4 1.00 63 16 2 5 7 @.,Ttttt point 0 nongenic 558 downstream {F21F8.2} 5136 CB6880_redo V 8302421 1 C T 255 1.00 63 62 0 31 31 @TTTTtTTTtTTTtttTtTtttTttTTtTtTT point 0 missense GGT->AGT[Gly->Ser] {W02D7.7.1,W02D7.7.2} 5151 CB6880_redo V 8330581 1 A C 115 8.56 63 62 11 17 28 @,,,C..C..CCCCC.CCC.CCCCCC..C point 0 nongenic,nongenic -4087 upstream,-6055 upstream {W02D7.9},{C08D8.2a,C08D8.2b} 5155 CB6880_redo V 8614311 1 G A 255 1.00 63 62 0 14 14 @aAaAAaaAAAaAaa point 0 nongenic,nongenic -4697 upstream,746 into {F41E6.2},{F41E6.4a,F41E6.4b} 5156 CB6880_redo V 8619245 1 G T 3 1.00 63 62 4 4 8 @TtTt,... point 0 nongenic,nongenic 237 into,755 downstream {F41E6.2},{F41E6.11} 5165 CB6880_redo V 8969823 1 T A 18 1.00 63 20 1 3 4 @Aaa. point 0 SNP none {haw80786} 5166 CB6880_redo V 8982111 1 A T 255 1.00 63 62 0 40 40 @tTTTtTTTTtTTtTttTTtTtttttTtttTtTtTtttTTt point 0 nongenic,nongenic -1206 upstream,250 downstream {F59E11.13},{F59E11.14} 5167 CB6880_redo V 9009027 1 T C 255 1.00 63 62 0 22 22 @ccCcCccccCcCccCcccCCcc point 0 nongenic -424 upstream {R03H4.2} 5168 CB6880_redo V 9162494 1 T G 251 2.19 63 62 0 23 23 @GgGggGGGGGGGgGgggGggGgg point 0 missense CAA->CCA[Gln->Pro] {B0222.7} 5173 CB6880_redo V 9376379 1 G T 255 1.00 63 62 0 42 42 @TttTTtTTTTTttTTTtTtTTtTtTtTttTTtTTTTTttTtt point 0 missense,SNP CAA->AAA[Gln->Lys],none {E02C12.10},{haw80948} 5182 CB6880_redo V 9551673 1 G A 255 1.00 63 62 0 21 21 @AaAAAaaAaAaaaAAaAAAAA point 0 nongenic,nongenic -1863 upstream,1057 into {C50F4.14},{F25B3.1} 5187 CB6880_redo V 9662867 1 T C 158 1.00 63 62 0 7 7 @CcCCCCC point 0 nongenic,nongenic -1279 upstream,-3805 upstream {B0331.2},{ZK287.1} 5188 CB6880_redo V 9663159 1 T G 255 1.00 63 62 0 20 20 @GGGGgGGGGggggGGGgGgg point 0 SNP none {haw81125} 5189 CB6880_redo V 9698445 1 A C 54 1.00 63 14 1 6 7 @CccCCc. point 0 nongenic,nongenic -2206 upstream,1345 into {ZK287.8b},{ZK287.8a} 5190 CB6880_redo V 9698446 1 C A 14 1.00 63 26 1 3 4 @AAa. point 0 nongenic,nongenic -2205 upstream,1346 into {ZK287.8b},{ZK287.8a} 5191 CB6880_redo V 9707449 1 T C 249 1.00 63 62 0 16 16 @CCCCCCCCCCCCCccC point 0 SNP none {haw81144} 5194 CB6880_redo V 9765116 1 A T 255 1.00 63 62 0 39 39 @TtTttttTtTTTTtTtttTTtTtttTTTTTtTTTtTTtt point 0 missense GTG->GAG[Val->Glu] {F58E6.10} 5195 CB6880_redo V 9927293 1 T A 255 1.00 63 62 0 32 32 @AAaAAaAAaAaAAaaaAaaaAAaAAaAaaAaA point 0 SNP none {haw81196} 5196 CB6880_redo V 9928614 1 C T 255 1.00 63 62 0 23 23 @TttTTTtttTTtttTtTtTTTTT point 0 silent,SNP CAG->CAA[Gln->Gln],none {T07C12.12},{haw81197} 5198 CB6880_redo V 10041199 1 G A 255 1.00 63 62 0 28 28 @AaAaaAAAaaaAAAAAaAaaAaAAAaAa point 0 nongenic,nongenic,nongenic -2449 upstream,-4813 upstream,3888 into {F57A8.1.2},{T06E8.2},{F57A8.1.1} 5200 CB6880_redo V 10139025 1 C G 3 3.88 0 0 3 6 9 @GGGGGG.,. point 0 nongenic,nongenic,nongenic -4903 upstream,-6897 upstream,3836 into {C08B6.7.1},{C51E3.9},{C08B6.8} 5201 CB6880_redo V 10139026 1 T G 3 3.88 0 0 3 6 9 @GGGCGC.,. point 0 nongenic,nongenic,nongenic -4904 upstream,-6896 upstream,3835 into {C08B6.7.1},{C51E3.9},{C08B6.8} 5202 CB6880_redo V 10139843 1 A C 3 7.69 0 0 3 7 10 @CC.,c.cccc point 0 nongenic,nongenic,nongenic -5721 upstream,-6079 upstream,3018 into {C08B6.7.1},{C51E3.9},{C08B6.8} 5203 CB6880_redo V 10164059 1 C G 11 1.00 63 14 4 4 8 @,...GggG point 0 nongenic,nongenic -3010 upstream,171 downstream {C51E3.10},{C51E3.6} 5204 CB6880_redo V 10235812 1 A T 26 1.00 63 62 2 3 5 @tTT,, point 0 nongenic,nongenic,nongenic -2411 upstream,319 downstream,432 downstream {C12D8.12},{C12D8.1b},{C12D8.1a,C12D8.1c.1,C12D8.1c.2,C12D8.1c.3} 5213 CB6880_redo V 10336013 1 G A 255 1.00 63 62 0 20 20 @AAaaaAAaaAaaaaaaAaaa point 0 nongenic,nongenic,nongenic -3459 upstream,-3929 upstream,576 into {K07C5.2},{B0024.14b},{K07C5.1} 5214 CB6880_redo V 10336188 1 A G 84 1.25 63 34 0 4 4 @GgGg point 0 nongenic,nongenic,nongenic -3284 upstream,-4104 upstream,751 into {K07C5.2},{B0024.14b},{K07C5.1} 5215 CB6880_redo V 10397712 1 C A 255 1.00 63 62 0 28 28 @AAAaAAAAAAAAAaaaaAAaAAaaAAAA point 0 SNP none {haw81401} 5216 CB6880_redo V 10444115 1 A T 206 1.00 63 62 0 10 10 @TtTTtTtTTT point 0 SNP none {haw81421} 5218 CB6880_redo V 10449487 1 T C 209 8.31 63 62 32 91 123 @CC.c.CCc.cc,,,cCCC.CCC,..cc.C,,C,,c.CCCCC.,c.,.CCCCC,c.CC,CC,.c,C.CCCcCCCCCCCCCCCCccCCCCCccCCCCCcCC point 0 nongenic 386 downstream {Y32F6A.6} 5222 CB6880_redo V 10449934 1 A G 4 9.88 0 18 1 8 9 @,GgGGGGGg point 0 nongenic 833 downstream {Y32F6A.6} 5223 CB6880_redo V 10598992 1 T A 8 1.00 63 62 4 5 9 @.,,.AAaAa point 0 nongenic,nongenic -87 upstream,352 downstream {T21C9.12},{T21C9.13} 5224 CB6880_redo V 10598995 1 C T 148 1.00 63 8 0 5 5 @TTtTt point 0 nongenic,nongenic -84 upstream,355 downstream {T21C9.12},{T21C9.13} 5229 CB6880_redo V 10621928 1 C A 255 1.00 63 62 0 39 39 @aAaAAaAaAaAAAAAaaaaAAaaAAAAAAaaaaaAaAaA point 0 SNP none {haw81482} 5230 CB6880_redo V 10661445 1 G T 255 1.00 63 62 0 32 32 @TtttTTtttttttttTTTttTtTtTtTtTtTT point 0 nongenic,nongenic,nongenic -2 upstream,-6115 upstream,0 downstream {F29F11.1.2},{F29F11.4},{F29F11.1.1} 5234 CB6880_redo V 10893331 1 A C 255 1.00 63 62 0 40 40 @CCccCccCCcccCccCcCCcCccCCCcCcCCcccCcCCCc point 0 SNP none {haw81672} 5242 CB6880_redo V 11012493 1 C G 85 1.00 63 62 3 5 8 @GGggG... point 0 nongenic -52 upstream {C13G3.1} 5243 CB6880_redo V 11025875 1 T A 80 1.00 63 52 0 4 4 @AaAA point 0 SNP none {haw81781} 5246 CB6880_redo V 11060706 1 C A 255 1.00 63 62 1 37 38 @AaAAAaAAaAAaaaa,aAAAaAaAAAAAAAAAAaAAaa point 0 nongenic -1467 upstream {T04C12.1} 5247 CB6880_redo V 11124333 1 G A 255 1.00 63 62 0 25 25 @NAAaaAAaAAaAAAAAaaAAaaaAa point 0 missense GGG->AGG[Gly->Arg] {C06H2.6} 5248 CB6880_redo V 11180409 1 G A 255 1.00 63 62 0 24 24 @aAaAaaAaAAaAAAaaAAAAaaaa point 0 SNP none {haw81856} 5255 CB6880_redo V 11687322 1 C T 255 1.00 63 62 0 33 33 @TtTTttTTTTtTTtTTttTtttTTTtTTtttTT point 0 SNP none {haw82144} 5258 CB6880_redo V 11883417 1 A G 255 1.00 63 62 0 26 26 @GggGgGgggGggGgggGGgGGgggGg point 0 SNP none {haw82276} 7534 CB6880_redo V 11883595 0 X X -1000 -999.99 -1000 -1000 4 -2 2 @.,,gg. indel 3 nongenic,nongenic -4619 upstream,456 downstream {K12G11.3},{K12G11.2} 5261 CB6880_redo V 11958123 1 A C 30 1.00 63 62 1 9 10 @CC,ccccccc point 0 nongenic,nongenic -245 upstream,-247 upstream {F58H1.5.1},{F58H1.5.2} 7535 CB6880_redo V 12166926 0 X X -1000 -999.99 -1000 -1000 4 0 4 @,,,,ccCCCC indel 0 nongenic,nongenic -242 downstream,285 downstream {ZK863.2},{VC27A7L.1} 5262 CB6880_redo V 12224861 1 G A 255 1.00 63 62 0 44 44 @AaaaAAaaAAaAaAAaaaAaaaaaaaaAAAaAAAaAaAaaaaaa point 0 missense GGA->AGA[Gly->Arg] {K12F2.2a,K12F2.2b,K12F2.2c.1,K12F2.2c.2} 7536 CB6880_redo V 12375950 0 X X -1000 -999.99 -1000 -1000 5 -3 2 @.....CC indel 0 nongenic -1584 upstream {K01D12.1} 5267 CB6880_redo V 12579466 1 G T 255 1.00 63 62 0 21 21 @TTTTtTTTTTtTTtTTttttT point 0 SNP none {haw83048} 5268 CB6880_redo V 12590431 1 A C 3 1.00 63 10 2 2 4 @c.c. point 0 nongenic,nongenic,nongenic 204 into,577 downstream,831 downstream {C14C10.7},{C14C10.2a,C14C10.2b},{C14C10.1} 5270 CB6880_redo V 12864064 1 A T 255 1.00 63 62 0 36 36 @tTttTtttTTTTTtttTTtttTTttTTTtTTTtTTT point 0 nongenic,nongenic,nongenic,nongenic -1829 upstream,251 downstream,300 into,558 downstream {T07F10.5},{T07F10.1a},{T07F10.6},{T07F10.1b} 5271 CB6880_redo V 12864636 1 A G 101 1.56 63 62 5 19 24 @GGG..G.GGGGG.GG.GGGGGGGG point 0 nongenic,nongenic,nongenic -1257 upstream,823 downstream,872 into {T07F10.5},{T07F10.1a},{T07F10.6} 5272 CB6880_redo V 12864640 1 C G 104 1.56 63 62 5 20 25 @GGG..G.GGGGG.GG.GGGGGGGGG point 0 nongenic,nongenic,nongenic -1253 upstream,827 downstream,876 into {T07F10.5},{T07F10.1a},{T07F10.6} 5273 CB6880_redo V 12876837 1 G A 255 1.00 63 62 0 27 27 @AAaaaAaAAAAAAAaaAaAaAAAAAaA point 0 ncRNA none {T07F10.4b} 5274 CB6880_redo V 12915568 1 A T 255 1.00 63 62 0 40 40 @tTttTttTTttttttTTTttttttTtTTtTtTttTttTTt point 0 SNP none {haw83378} 5275 CB6880_redo V 12919477 1 A G 255 1.00 63 62 0 33 33 @GggGGGGGGgggggGggggggGgggGGGgGggg point 0 SNP none {haw83380} 5279 CB6880_redo V 13371418 1 G A 255 1.00 63 62 0 28 28 @aAaAAaaaAaaaAAAaAAAAAaAaaAaa point 0 nongenic,nongenic,nongenic,nongenic -9753 upstream,1321 into,1327 into,883 into {M04G12.2},{M04G12.1b},{M04G12.1c.1},{M04G12.1a,M04G12.1c.2} 5281 CB6880_redo V 13466076 1 G A 255 1.00 63 62 0 34 34 @AAAAAaaaAaAaAAAAAaAAAaAAaaaAaAAAAA point 0 SNP none {haw83625} 5282 CB6880_redo V 13506485 1 T A 98 1.00 63 62 1 5 6 @.aAaAa point 0 nongenic,nongenic,nongenic -3759 upstream,283 into,5216 into {R11G10.1b.1},{R11G10.4},{R11G10.1a} 5283 CB6880_redo V 13506487 1 C T 136 1.00 63 62 1 6 7 @.tTtTtt point 0 nongenic,nongenic,nongenic -3761 upstream,281 into,5214 into {R11G10.1b.1},{R11G10.4},{R11G10.1a} 5286 CB6880_redo V 13526015 1 T G 3 9.06 63 2 2 11 13 @GGGGGGGGGGG,. point 0 nongenic,nongenic -10816 upstream,2504 into {R11G10.2},{R11G10.3} 5287 CB6880_redo V 13539850 1 G T 129 1.00 63 62 0 6 6 @TtTTTt point 0 SNP none {haw83676} 5295 CB6880_redo V 13645924 1 T G 92 1.00 63 62 3 8 11 @GGggg...ggg point 0 nongenic,nongenic -11720 upstream,942 downstream {H37A05.2},{H37A05.4} 5296 CB6880_redo V 13645955 1 T C 252 1.00 63 62 1 15 16 @cccccCCcCCCCccC, point 0 SNP none {haw83752} 5297 CB6880_redo V 13645978 1 C A 62 1.00 63 62 7 9 16 @A.AAAA..A,..aa,a point 0 nongenic,nongenic -11774 upstream,888 downstream {H37A05.2},{H37A05.4} 5298 CB6880_redo V 13646003 1 A C 68 1.06 63 62 9 12 21 @,..cc,cCcC.C..CccC.c, point 0 nongenic,nongenic -11799 upstream,863 downstream {H37A05.2},{H37A05.4} 5299 CB6880_redo V 13717171 1 T C 249 1.00 63 62 0 12 12 @cCccCccCcCcC point 0 SNP none {haw83786} 5300 CB6880_redo V 13720951 1 C A 4 3.00 63 4 1 3 4 @.aaa point 0 nongenic,nongenic 567 downstream,681 downstream {T01D3.6a},{T01D3.6b} 5301 CB6880_redo V 13720952 1 A C 13 3.00 63 4 0 4 4 @gccc point 0 nongenic,nongenic 568 downstream,682 downstream {T01D3.6a},{T01D3.6b} 5305 CB6880_redo V 13886659 1 T C 255 1.00 63 62 0 23 23 @ccCCCCcccccCcccccCccCCC point 0 SNP none {haw83916} 5306 CB6880_redo V 13888688 1 A G 255 1.00 63 62 0 36 36 @gggGGggGGGGgggGGggGGGGGGgGgGGGgggGgG point 0 SNP none {haw83918} 5307 CB6880_redo V 13931064 1 A T 255 1.00 63 62 0 29 29 @ttTtTTtTTtTTTtTTttTTTtTTttTTT point 0 missense,SNP TTA->TTT[Leu->Phe],none {C06B3.14},{haw83931} 5308 CB6880_redo V 13981688 1 G A 15 1.00 63 62 19 28 47 @A..A.AAAA..A..AA..A..AAAAA..AAAAA..AAA.AA.AAA.. point 0 silent GTC->GTT[Val->Val] {T26F2.2} 5321 CB6880_redo V 14468696 1 C T 255 2.88 63 62 0 29 29 @TTtTtTTTTTttTTttttTtTTTTTTttt point 0 ncRNA none {F08H9.11} 5327 CB6880_redo V 14630705 1 G C 29 1.00 63 0 1 6 7 @CCCCCc. point 0 nongenic,nongenic -1164 upstream,914 into {F43D2.3},{F43D2.6} 5330 CB6880_redo V 14630711 1 T C 4 1.00 63 0 1 4 5 @CCCc. point 0 nongenic,nongenic -1158 upstream,920 into {F43D2.3},{F43D2.6} 5333 CB6880_redo V 14733448 1 G C 255 1.00 63 62 0 29 29 @ccccccccCccCccCCccCCccCCcCcCc point 0 missense CTT->GTT[Leu->Val] {Y50E8A.4a,Y50E8A.4b,Y50E8A.4c} 5336 CB6880_redo V 14743838 1 T C 255 1.06 63 62 0 27 27 @cCCCcCCCCcCcCcCCcccCCCcCCcc point 0 nongenic -2532 upstream {Y50E8A.6} 5339 CB6880_redo V 14744203 1 T C 3 3.69 0 0 1 3 4 @CcC, point 0 nongenic -2897 upstream {Y50E8A.6} 5346 CB6880_redo V 14744337 1 G C 89 2.12 34 62 0 14 14 @CCCCcCCCcCCCCC point 0 nongenic -3031 upstream {Y50E8A.6} 5349 CB6880_redo V 14744895 1 T A 177 1.00 63 62 0 10 10 @AAAAAAAAAA point 0 nongenic,nongenic -3589 upstream,767 downstream {Y50E8A.6},{Y50E8A.7} 7548 CB6880_redo V 14768216 1 X X -1000 -999.99 -1000 -1000 13 4 17 @....g..gggc....gg.., indel -1 nongenic,nongenic -17779 upstream,-5119 upstream {Y50E8A.17},{Y50E8A.16} 5414 CB6880_redo V 14938747 1 T C 57 1.00 63 62 2 4 6 @cCCC,. point 0 silent TTA->CTA[Leu->Leu] {C30G7.2} 5420 CB6880_redo V 15320688 1 T G 3 9.25 63 0 0 4 4 @CGgg point 0 nongenic,nongenic -3141 upstream,157 downstream {ZK1037.5},{ZK1037.13} 5428 CB6880_redo V 15363995 1 G A 255 1.00 63 62 0 49 49 @AaaAaAaAaAAAAAAAaaAAAaAaaaAAaaaAAAAAAAAaaaaAAaAAa point 0 nongenic -3279 upstream {C29F3.1} 5429 CB6880_redo V 15434045 1 G A 117 1.62 63 62 19 38 57 @A.aaaa,A,A,AAAAA.aaAa.,.A..AA,A,aAAAaAAAa.A.aAaaA..A.aa.. point 0 nongenic -1501 upstream {T26H5.8} 5430 CB6880_redo V 15434980 1 G C 55 1.00 63 62 26 45 71 @,ccc,,.cc.,.c.Cc,cC,,CCcccccCCCC.,cC.c,,,C..CcCC,Cc.c..c,CCcCcC.CCcC.CC point 0 SNP none {haw85321} 5431 CB6880_redo V 15435294 1 C A 79 1.00 63 62 26 61 87 @.Aaa,,aAaaAaaa.,A,AaA.a.a,.aaaaaAaaa,.aaA.a,a.,.aaAa,.a.aaAaaAa.Aa.aAa.Aaa.aa.,AAaaaaAa point 0 SNP none {haw85323} 5433 CB6880_redo V 15479200 1 C A 255 1.00 63 62 0 25 25 @AaAAaAAAAAaaaAAaaaAAAAAaa point 0 SNP none {haw85361} 7552 CB6880_redo V 15527876 0 X X -1000 -999.99 -1000 -1000 4 -3 1 @,...gg indel 0 nongenic,nongenic -1468 upstream,-5879 upstream {F21A3.1},{F21A3.8} 5442 CB6880_redo V 15581676 1 T C 255 1.75 63 62 0 29 29 @cccCCcccccCcccCCCcCCccCCcCcCc point 0 nongenic,nongenic -3995 upstream,-854 upstream {B0391.10},{F28F8.7} 5443 CB6880_redo V 15581801 1 T C 219 1.25 63 62 1 16 17 @cccccccccccccCCc. point 0 nongenic,nongenic -3870 upstream,-979 upstream {B0391.10},{F28F8.7} 5449 CB6880_redo V 15598117 1 C A 132 8.38 63 62 2 23 25 @AaaAaaaaaaaaAAAAaaAAaA.a. point 0 nongenic -4342 upstream {B0391.9} 5452 CB6880_redo V 15609931 1 A G 4 5.50 63 0 1 5 6 @.Ggggg point 0 nongenic,nongenic,nongenic -4800 upstream,-933 upstream,425 into {B0391.6},{B0391.4},{B0391.5} 5453 CB6880_redo V 15769595 1 G A 255 1.00 63 62 0 41 41 @AAAaaaAAaAaaaaaaaAaAAAaaAaaaaaAAAaaaAaaaA point 0 nongenic,nongenic 181 into,740 downstream {F57A10.4},{F57A10.5} 5454 CB6880_redo V 15811785 1 A T 255 1.00 63 62 0 17 17 @TttttTttTTtTtTTTT point 0 nongenic,nongenic -471 upstream,479 downstream {F54B8.2},{F54B8.1} 5455 CB6880_redo V 15929263 1 G A 255 1.00 63 62 0 50 50 @AAAaaAaAAAAaaAaAAAAaAAAAAaAAaAaAaAAaaAaAAaaaaAaAAA point 0 nongenic,nongenic -893 upstream,-916 upstream {T05G11.2},{T05G11.1} 5456 CB6880_redo V 16007498 1 G A 255 1.00 63 62 0 40 40 @AAaaAAaaaAAAAaAAAAaAaaAaAaAaaAAaaaAAaAaA point 0 missense CTT->TTT[Leu->Phe] {C06C6.3} 5457 CB6880_redo V 16049033 1 C T 255 1.00 63 62 0 36 36 @TtTttTttTtTTTtTttTttTTTtTTttTtTtTTTt point 0 missense CCA->CTA[Pro->Leu] {ZK285.1} 5465 CB6880_redo V 16399106 1 C G 5 1.00 63 22 2 6 8 @.,gggggg point 0 nongenic,nongenic -555 upstream,629 downstream {F13A7.13},{F13A7.12} 5466 CB6880_redo V 16420522 1 G A 255 1.00 63 62 0 35 35 @aaaAAAAaAAAAAAaaAaAAAaAAAAAAAAaaaAA point 0 SNP none {haw88457} 7556 CB6880_redo V 16460134 1 X X -1000 -999.99 -1000 -1000 11 -8 3 @..,,,,,,.., indel -1 SNP none {uCE5-2399} 5480 CB6880_redo V 16556531 1 C T 255 1.00 63 62 0 46 46 @ttttTTtTTTTtTttTtttttTTtTTTTTTTttttTtTTtTtTTTT point 0 missense TCT->TTT[Ser->Phe] {Y32B12B.4} 5485 CB6880_redo V 16690157 1 A T 13 1.00 63 10 1 6 7 @.ttTTTt point 0 nongenic 317 downstream {F14F8.13} 7559 CB6880_redo V 16707701 1 X X -1000 -999.99 -1000 -1000 20 -19 1 @,..........g.....a,,.. indel -1 nongenic -1081 upstream {Y70C5C.2} 5503 CB6880_redo V 16723977 1 T C 255 1.00 63 62 0 32 32 @cccCCccccccccCcccccccCCcccccCCcc point 0 nongenic,nongenic -160 upstream,-3209 upstream {Y70C5C.6a,Y70C5C.6b},{T25E12.14} 5504 CB6880_redo V 16723993 1 G C 255 1.00 63 62 0 32 32 @cccccCcccccccCCcccccCCcccCcCcCCc point 0 nongenic,nongenic -176 upstream,-3193 upstream {Y70C5C.6a,Y70C5C.6b},{T25E12.14} 5505 CB6880_redo V 16733914 1 A C 255 1.00 63 62 0 33 33 @CCccCccCCcCCCccCccCccccCCcCCcCccC point 0 missense,SNP TTT->GTT[Phe->Val],none {T25E12.10},{haw89342,snp_T25E12[1]} 5506 CB6880_redo V 16758355 1 A T 150 1.00 63 62 0 7 7 @TTTTTTT point 0 SNP none {haw89380} 5507 CB6880_redo V 16790698 1 C T 255 1.00 63 62 0 19 19 @tttttTtTTtTTttttttt point 0 nongenic 1397 into {W06H3.1} 5508 CB6880_redo V 16816476 1 T C 255 1.00 63 62 0 39 39 @cCccCCcCcCCcccCCCCCCCCCcccccCcCCccccccC point 0 nongenic 938 into {T20B3.1} 5509 CB6880_redo V 16874737 1 C G 21 1.00 63 42 6 6 12 @ggGGgG,...., point 0 nongenic,nongenic,nongenic -1110 upstream,-3277 upstream,690 into {F49A5.10},{F49A5.6},{F49A5.8} 5530 CB6880_redo V 16982761 1 A T 166 1.94 63 62 0 16 16 @TTTTttTtTttttttt point 0 nongenic 910 downstream {Y102A5C.25} 5531 CB6880_redo V 17040175 1 C A 4 5.81 63 30 1 4 5 @aaaa, point 0 nongenic,nongenic -2386 upstream,-4254 upstream {F28B1.1},{F49H6.11} 5538 CB6880_redo V 17167970 1 C T 255 1.06 63 62 0 34 34 @TttttTtTTTtttTTtTtTtTTtTTTTtTtTtTt point 0 nongenic -442 upstream {F40D4.9a} 5541 CB6880_redo V 17333245 1 T G 255 1.00 63 62 0 50 50 @ggGgggGGgGgGgGGGgGgggGgGgGGGGgGGGGgggGgGGggagggGgg point 0 nongenic,nongenic -2835 upstream,1707 into {F47H4.6},{F47H4.4} 5544 CB6880_redo V 17378169 1 G A 255 1.00 63 62 0 21 21 @AaaaAAaaAaAaaAaAaaAAa point 0 SNP none {haw90646} 5546 CB6880_redo V 17469462 1 T A 78 1.00 63 26 2 6 8 @aaAaaA.. point 0 nongenic,nongenic,nongenic -241 upstream,728 downstream,902 downstream {F20E11.17},{F08E10.1},{F20E11.6} 5552 CB6880_redo V 17619073 1 C G 255 1.12 63 62 0 24 24 @GgggggGGgGgGGGGggGggGGgG point 0 nongenic,nongenic -1088 upstream,-2183 upstream {Y6G8.8},{Y6G8.6} 5560 CB6880_redo V 17738120 1 T C 13 6.19 0 2 0 5 5 @CCCCC point 0 nongenic,nongenic -7770 upstream,1741 into {W06D12.2},{W06D12.1} 5563 CB6880_redo V 17738206 1 T C 15 8.12 0 14 0 7 7 @CCCCCCC point 0 nongenic,nongenic -7856 upstream,1655 into {W06D12.2},{W06D12.1} 5564 CB6880_redo V 17738238 1 T C 99 8.06 63 62 0 13 13 @CCCCCCcCCccCC point 0 nongenic,nongenic -7888 upstream,1623 into {W06D12.2},{W06D12.1} 5565 CB6880_redo V 17867118 1 T G 101 2.19 63 62 0 5 5 @gggGG point 0 nongenic,nongenic,nongenic -11158 upstream,-4254 upstream,3502 into {Y59A8A.3.1},{Y59A8A.2},{Y59A8A.1} 5570 CB6880_redo V 17867621 1 T C 70 1.50 34 62 3 3 6 @...ccc point 0 nongenic,nongenic,nongenic -11661 upstream,-3751 upstream,2999 into {Y59A8A.3.1},{Y59A8A.2},{Y59A8A.1} 5571 CB6880_redo V 17867627 1 A T 108 1.31 34 62 2 5 7 @..ttttt point 0 nongenic,nongenic,nongenic -11667 upstream,-3745 upstream,2993 into {Y59A8A.3.1},{Y59A8A.2},{Y59A8A.1} 5573 CB6880_redo V 17886165 1 G T 3 8.44 0 0 0 7 7 @NTTTTTT point 0 nongenic 2788 into {C06H5.6} 5578 CB6880_redo V 17898272 1 G A 255 3.94 63 62 0 27 27 @AaaAAAAAaAAAAAaAaAAAaaAaaaa point 0 nongenic,nongenic -1517 upstream,-1523 upstream {C06H5.1},{C06H5.2} 5581 CB6880_redo V 17920393 1 T A 40 1.00 63 0 0 5 5 @AAAAa point 0 nongenic,nongenic -1358 upstream,1310 into {E01B7.2},{C06H5.8} 5582 CB6880_redo V 17950254 1 T A 218 1.00 63 62 0 17 17 @AAAAaAAAAAAAAAAAA point 0 SNP none {haw91922} 5587 CB6880_redo V 17961088 1 T A 128 2.44 63 62 0 17 17 @AAAaAaaAAAAAcaaAA point 0 nongenic 5728 into {Y59A8B.23a,Y59A8B.23b} 5588 CB6880_redo V 17972070 1 G T 206 1.31 63 62 0 14 14 @TTttTttttttttt point 0 nongenic,nongenic,nongenic,nongenic -14154 upstream,-5254 upstream,3512 into,3570 into {Y59A8B.21},{Y59A8B.23a,Y59A8B.23b},{Y59A8B.22.1},{Y59A8B.22.2} 5589 CB6880_redo V 17972080 1 G T 182 1.38 63 62 0 12 12 @ttTttttttttt point 0 nongenic,nongenic,nongenic,nongenic -14144 upstream,-5264 upstream,3522 into,3580 into {Y59A8B.21},{Y59A8B.23a,Y59A8B.23b},{Y59A8B.22.1},{Y59A8B.22.2} 5590 CB6880_redo V 17975954 1 T A 49 1.81 63 6 1 4 5 @AAAA, point 0 nongenic,nongenic,nongenic -10270 upstream,-9138 upstream,4096 into {Y59A8B.21},{Y59A8B.23a,Y59A8B.23b},{Y59A8B.22.1,Y59A8B.22.2} 5591 CB6880_redo V 17975956 1 C T 6 1.69 63 48 2 4 6 @TTTT,, point 0 nongenic,nongenic,nongenic -10268 upstream,-9140 upstream,4094 into {Y59A8B.21},{Y59A8B.23a,Y59A8B.23b},{Y59A8B.22.1,Y59A8B.22.2} 7562 CB6880_redo V 17989160 1 X X -1000 -999.99 -1000 -1000 9 -6 3 @...,,,,., indel -1 SNP none {uCE5-2743} 5595 CB6880_redo V 18022415 1 G A 255 1.00 63 62 0 23 23 @aAaAaAaaAAaaaaaAAaAaaAA point 0 nongenic,nongenic,nongenic -27 upstream,-29 upstream,-5122 upstream {Y59A8B.6.1},{Y59A8B.6.2},{Y59A8B.4} 5607 CB6880_redo V 18218268 1 G A 17 8.94 63 62 35 44 79 @,,aA,,A.aAaAaa.a..AaaA..aAaA.A,,.a,AaA,.AAaAaa,,.a,.a,.A..A.aaAa.AAa.a,.a..,,Aa point 0 nongenic,nongenic -2026 upstream,1219 into {F16H6.8},{F16H6.9} 5611 CB6880_redo V 18345898 1 C T 184 1.00 63 62 3 14 17 @,ttTTTTTT,TtTtTT, point 0 nongenic,nongenic -4215 upstream,-6043 upstream {C08E8.3},{C08E8.10} 5612 CB6880_redo V 18382219 1 C T 17 1.00 63 62 6 6 12 @.t..t..TT.tt point 0 nongenic,splice_acceptor 438 into,none {Y51A2B.3},{Y51A2B.3} 5624 CB6880_redo V 18490949 1 T C 5 1.00 63 26 1 6 7 @.cccccc point 0 nongenic,nongenic -1322 upstream,-3726 upstream {Y51A2D.19a,Y51A2D.19b,Y51A2D.19c},{Y51A2D.18} 5630 CB6880_redo V 18614641 1 T C 38 1.00 63 62 14 15 29 @ccCCc.c,cC.CC,C,.c..c.C.,..c. point 0 nongenic,nongenic -1924 upstream,730 downstream {Y51A2D.17},{Y51A2D.20} 5631 CB6880_redo V 18621480 1 A C 5 1.00 63 62 3 7 10 @CCCCCCc,,. point 0 nongenic 1029 into {Y69H2.1} 5632 CB6880_redo V 18656480 1 T C 255 1.00 63 62 0 27 27 @cCccccccCcccccccCcCccCcccCc point 0 nongenic,nongenic,nongenic 324 into,348 downstream,408 into {Y69H2.3c},{Y69H2.12},{Y69H2.3b} 5634 CB6880_redo V 18681507 1 G T 14 2.69 0 2 0 4 4 @tTTT point 0 nongenic 2820 into {Y69H2.10b} 5635 CB6880_redo V 18683437 1 G T 93 4.81 63 62 0 5 5 @TTtTt point 0 nongenic 890 into {Y69H2.10b} 5637 CB6880_redo V 18750812 1 C T 36 1.31 63 62 15 23 38 @Tt,t.tt.,Ttt.tTtttt.Tt,ttT,,T.t,..,,Tt point 0 nongenic,nongenic -154 upstream,420 downstream {F11D11.12},{F11D11.11} 5640 CB6880_redo V 18858714 1 C T 183 1.00 63 62 0 11 11 @ttttttttttt point 0 SNP none {haw93705} 5647 CB6880_redo V 18955088 1 C A 193 1.00 63 62 4 16 20 @Aa,aaAAaA.aa,aAaaaa, point 0 nongenic 1978 into {Y80D3A.9} 5649 CB6880_redo V 18959114 1 A G 73 3.00 31 56 0 5 5 @GggGg point 0 nongenic,nongenic -1842 upstream,910 into {Y80D3A.9},{Y39B6A.46} 5650 CB6880_redo V 18959149 1 A G 128 1.00 50 62 0 8 8 @gggggggG point 0 nongenic,nongenic -1877 upstream,945 into {Y80D3A.9},{Y39B6A.46} 5656 CB6880_redo V 18965154 1 T A 116 1.00 63 62 0 5 5 @aaaaa point 0 SNP none {haw94014} 5657 CB6880_redo V 18980199 1 A T 3 7.31 0 2 1 3 4 @tT,T point 0 nongenic,nongenic,nongenic -1084 upstream,-2255 upstream,853 into {Y39B6A.39},{Y39B6A.41},{Y39B6A.40} 5661 CB6880_redo V 19052087 1 T C 255 1.00 63 62 0 17 17 @CcccccCcccccCccCC point 0 SNP none {haw94226} 5670 CB6880_redo V 19065959 1 G A 3 4.25 0 0 1 3 4 @.AaA point 0 nongenic,nongenic,nongenic -15168 upstream,914 into,967 into {Y39B6A.20.1},{Y39B6A.19b},{Y39B6A.19a} 5682 CB6880_redo V 19106036 1 T C 81 1.00 63 62 5 8 13 @,C,,C,,cCCcCC point 0 nongenic,nongenic -4962 upstream,3626 into {Y39B6A.16},{Y39B6A.14} 5684 CB6880_redo V 19128089 1 C T 191 1.00 63 62 8 27 35 @t.tttTTTtTTT,,t.tttT.Tt..tttT,TTTtT point 0 nongenic,nongenic -3215 upstream,595 into {Y39B6A.12a},{Y39B6A.11} 5685 CB6880_redo V 19132104 1 C T 123 1.00 63 62 15 32 47 @TT,t.,TTTt,tTt.T..tT,Ttt.TtT.TTTtt.Tt.TT.Tt,t.t point 0 missense GAT->AAT[Asp->Asn] {Y39B6A.10} 5686 CB6880_redo V 19187353 1 T C 255 1.00 63 62 0 28 28 @CcCCCcCCCCcccccCccccccCcccCC point 0 nongenic 512 into {Y39B6A.48} 5688 CB6880_redo V 19199048 1 C T 35 1.00 63 62 1 4 5 @TtT,T point 0 nongenic 159 downstream {Y39B6A.2} 5689 CB6880_redo V 19201472 1 C T 67 1.00 63 62 14 24 38 @.ttT,tT,Tt.t.t,,.tt.,t,TTt,TtTtttt,.Tt point 0 missense GGA->GAA[Gly->Glu] {Y39B6A.1.1,Y39B6A.1.2} 5691 CB6880_redo V 19329541 1 C T 105 1.00 63 62 15 37 52 @,T,TTT,T.tTTT,T.TTtTTt.TTTTTT,,tTT,,t,.tTt.TtTTT,TTT point 0 nongenic,nongenic -63 upstream,-7088 upstream {C43D7.2},{C43D7.4} 5692 CB6880_redo V 19329923 1 C T 233 1.00 63 62 6 28 34 @TttTT,t.t,TTTtttTttT.T,tttTtTt,ttT point 0 missense CCT->CTT[Pro->Leu] {C43D7.2} 5695 CB6880_redo V 19435001 1 C T 207 1.00 63 62 5 21 26 @.TTttttT.tt.TTTTTTTT,,TTtt point 0 nongenic,nongenic -1537 upstream,-1976 upstream {C25F9.14},{C25F9.11} 5699 CB6880_redo V 19499424 1 G C 123 1.00 63 62 0 5 5 @CCCCc point 0 nongenic,nongenic -3651 upstream,-3772 upstream {Y43F8B.3a,Y43F8B.3b},{Y43F8B.5} 5700 CB6880_redo V 19506793 1 T A 255 1.00 63 62 0 29 29 @AAaAAAaaaaAAaaaAaAAAaaaAaAaaa point 0 nongenic,nongenic -11141 upstream,3718 into {Y43F8B.5},{Y43F8B.3a,Y43F8B.3b} 5713 CB6880_redo V 19754364 1 A T 33 1.00 63 18 4 6 10 @.,,,tttttT point 0 nongenic,nongenic,nongenic -2152 upstream,-3187 upstream,964 into {W04E12.9},{W04E12.6},{W04E12.8} 5714 CB6880_redo V 19779259 1 T G 28 1.00 63 20 0 4 4 @GCGg point 0 nongenic,nongenic -4833 upstream,-586 upstream {M162.3},{M162.11} 5715 CB6880_redo V 19800168 1 A G 43 1.00 63 62 3 4 7 @,,ggG,g point 0 nongenic,nongenic -15239 upstream,929 into {Y116F11B.1},{Y116F11B.2} 5717 CB6880_redo V 19816962 1 C T 255 1.00 63 62 0 14 14 @ttttttTtTtTTtT point 0 SNP none {haw96009} 5721 CB6880_redo V 19862667 1 A C 154 1.00 63 62 0 6 6 @CccCcc point 0 ncRNA,SNP none,none {Y116F11B.9b},{haw96106} 5722 CB6880_redo V 19868214 1 C G 231 1.00 63 62 0 10 10 @GgGGGGGgGg point 0 nongenic,nongenic -267 upstream,-9969 upstream {Y116F11B.9a},{Y116F11B.11} 5725 CB6880_redo V 19893322 1 A G 13 1.00 63 20 1 3 4 @c.gg point 0 nongenic,nongenic -690 upstream,1992 into {Y116F11B.12b.2},{Y116F11B.12a,Y116F11B.12b.1,Y116F11B.12b.3} 5726 CB6880_redo V 19893323 1 C G 20 1.00 63 12 1 3 4 @.ggg point 0 nongenic,nongenic -691 upstream,1991 into {Y116F11B.12b.2},{Y116F11B.12a,Y116F11B.12b.1,Y116F11B.12b.3} 5728 CB6880_redo V 19993727 1 T A 211 1.00 63 62 0 10 10 @aaaAAAAAaA point 0 nongenic 426 into {Y60A3A.25} 5733 CB6880_redo V 20072235 1 T C 7 1.00 63 62 2 4 6 @CCCC.. point 0 nongenic -8097 upstream {Y113G7A.6a,Y113G7A.6b} 163802 CB6880_redo V 20083801 52 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered,uncovered non-exonic, 3834 to 3886 bp into,non-exonic, 3844 to 3896 bp into {Y113G7A.8.1},{Y113G7A.8.2} 5737 CB6880_redo V 20337877 1 C T 255 1.00 63 62 0 19 19 @ttttTtTtttTtttttTtt point 0 SNP none {haw97199} 5738 CB6880_redo V 20430334 1 A C 126 2.56 63 62 6 9 15 @CcCcCccCc..,.., point 0 nongenic,nongenic -19889 upstream,967 into {F53H2.3},{F48F5.5} 5744 CB6880_redo V 20550701 1 C T 255 1.00 63 62 0 33 33 @tttttttTTTTtttTTTtTtTttTtttTTTtTt point 0 nongenic,nongenic -3589 upstream,427 into {Y38H6C.18},{Y38H6C.20} 5745 CB6880_redo V 20603448 1 G A 255 1.00 63 62 0 40 40 @aaaaaAaAAAaAAaAAaAaaAaaaAaAaAaaAAAAAAAAA point 0 missense CGT->CAT[Arg->His] {F46B3.3} 5770 CB6880_redo X 106540 1 T A 23 2.62 34 26 7 10 17 @.Aa.AA.,aAa..aaA. point 0 nongenic,nongenic -1777 upstream,430 downstream {Y73B3A.4},{Y73B3A.5} 5772 CB6880_redo X 106701 1 A G 134 3.31 50 62 3 10 13 @T,.gg,ggGgGgG point 0 nongenic,nongenic -1938 upstream,269 downstream {Y73B3A.4},{Y73B3A.5} 5773 CB6880_redo X 161175 1 G T 255 7.00 63 62 0 28 28 @TTTtTtttttTtTttTtTtTttTtTTTt point 0 nongenic -3814 upstream {Y73B3A.10} 5784 CB6880_redo X 187274 1 C G 255 1.06 63 62 0 22 22 @ggGGggggggggggggggGGgg point 0 SNP none {haw98538} 5787 CB6880_redo X 276488 1 G A 94 1.94 34 62 6 17 23 @aaAaaaa.a,AAa,aAAaaa... point 0 nongenic,nongenic -2475 upstream,1410 into {Y108F1.5},{Y108F1.1} 5788 CB6880_redo X 289841 1 G C 248 3.25 63 62 2 21 23 @CCCCcCCcCcCCccCcCcCC,C, point 0 nongenic,nongenic -3316 upstream,-7406 upstream {Y47C4A.1},{R57.2} 5789 CB6880_redo X 289852 1 G C 188 7.25 63 62 6 17 23 @CcCcCCccCcCc,,,,,Cc,CCc point 0 nongenic,nongenic -3327 upstream,-7395 upstream {Y47C4A.1},{R57.2} 5790 CB6880_redo X 291566 1 T C 4 8.69 19 6 5 38 43 @,...,cCCCccCcCCCCccCCCCcCCCCcCcCCcCCCCccCCC point 0 nongenic,nongenic -5041 upstream,-5681 upstream {Y47C4A.1},{R57.2} 5792 CB6880_redo X 299633 1 T A 255 1.00 63 62 0 16 16 @AaaaAaaAaaAaAaaa point 0 SNP none {haw98564} 5803 CB6880_redo X 341454 1 G C 255 1.00 63 62 0 20 20 @CCCCCcccccccCcccCCcC point 0 nongenic -221 upstream {C04E7.4} 5804 CB6880_redo X 346995 1 G T 121 1.50 63 62 0 4 4 @ttTT point 0 nongenic,nongenic -6624 upstream,-705 upstream {C04E7.2},{C04E7.3} 5810 CB6880_redo X 347042 1 G T 82 1.00 63 32 0 5 5 @ttTtt point 0 nongenic,nongenic -6577 upstream,-752 upstream {C04E7.2},{C04E7.3} 5811 CB6880_redo X 348115 1 C A 255 1.00 63 62 0 21 21 @aaaAaaAaAAaAAAaAAaaaa point 0 SNP none {haw98580} 5817 CB6880_redo X 363939 1 C T 255 1.00 63 62 0 36 36 @TtTTTTTTtTtTTtTtTtTTTTTTtTtttttTTTTT point 0 nongenic -8296 upstream {R04A9.2} 5818 CB6880_redo X 365026 1 T G 4 1.00 63 26 2 3 5 @GG.,a point 0 nongenic -7209 upstream {R04A9.2} 5820 CB6880_redo X 382890 1 C G 255 1.00 63 62 0 35 35 @gGGgggGgGgGGggggggGggggggggGgGGGggg point 0 nongenic -179 upstream {R04A9.4} 5821 CB6880_redo X 424545 1 T C 255 1.75 63 62 0 23 23 @cCcccCCCcCCcCcccCcCcCCc point 0 nongenic 1240 into {ZK1193.4} 5822 CB6880_redo X 424576 1 T C 255 1.75 63 62 0 36 36 @ccCcCcCCcCcCCcCccCccCccCCcCccCCCccCc point 0 SNP none {haw98625} 5823 CB6880_redo X 424587 1 T C 255 1.50 63 62 0 33 33 @CcCCcCccCccCccCCcCccCCCccCcCCCccc point 0 SNP none {haw98626} 5824 CB6880_redo X 424629 1 T C 255 1.12 63 62 0 29 29 @CCcccCccccCccCccccCCccCCcCCcC point 0 nongenic 1324 into {ZK1193.4} 5825 CB6880_redo X 424765 1 G T 255 1.06 63 62 0 24 24 @TtTtttttTtTTTTTTttTTtttt point 0 SNP none {haw98627} 5826 CB6880_redo X 425164 1 T G 3 1.00 63 26 0 4 4 @cCgg point 0 nongenic 1240 into {ZK1193.4} 163803 CB6880_redo X 425405 56 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered non-exonic, 943 to 999 bp into {ZK1193.4} 5832 CB6880_redo X 425547 1 C G 228 1.00 63 62 0 11 11 @gGGGGGGGGgG point 0 nongenic 857 into {ZK1193.4} 5833 CB6880_redo X 443404 1 C G 61 2.50 24 46 0 4 4 @gggg point 0 nongenic -9602 upstream {ZK1193.5a,ZK1193.5b} 5845 CB6880_redo X 486102 1 A G 255 1.00 63 62 0 38 38 @GggGgggGGGgGGgggggggGgGGgGGGggggggGGGG point 0 SNP none {haw98666} 5847 CB6880_redo X 488806 1 G T 229 1.12 63 62 0 12 12 @tttTTTtTtttt point 0 SNP none {haw98668} 5848 CB6880_redo X 491868 1 C A 255 1.00 63 62 0 22 22 @aaAAAAaaAaaAaaaaAaAAaA point 0 SNP none {haw98673} 5860 CB6880_redo X 515523 1 T C 3 1.00 63 0 1 3 4 @Ccc, point 0 nongenic -1038 upstream {B0310.3} 5861 CB6880_redo X 538129 1 G T 119 1.75 63 62 0 4 4 @Tttt point 0 nongenic,nongenic,nongenic -2292 upstream,-4979 upstream,943 into {F28C10.3},{F28C10.1},{F28C10.4} 5862 CB6880_redo X 538148 1 C A 45 1.69 63 34 0 5 5 @aaaaa point 0 nongenic,nongenic,nongenic -2311 upstream,-4960 upstream,962 into {F28C10.3},{F28C10.1},{F28C10.4} 5863 CB6880_redo X 538182 1 A G 179 1.19 63 62 0 13 13 @ggggggggggggg point 0 nongenic,nongenic,nongenic -2345 upstream,-4926 upstream,996 into {F28C10.3},{F28C10.1},{F28C10.4} 5866 CB6880_redo X 608666 1 T A 9 1.00 63 62 2 14 16 @GAGA,A,GAGGGAaaa point 0 nongenic -172 upstream {F13C5.5} 5867 CB6880_redo X 608671 1 T A 5 1.00 63 10 4 12 16 @,AA,,,AGGAGAcaag point 0 nongenic -177 upstream {F13C5.5} 5869 CB6880_redo X 817619 1 A T 255 1.00 63 62 0 34 34 @ttTTTTtttTTtTTtTtTTTttttTttTTTTTTt point 0 SNP none {haw98919} 7576 CB6880_redo X 872120 0 X X -1000 -999.99 -1000 -1000 4 2 6 @.,,,gTg indel 0 nongenic,nongenic,nongenic -1040 upstream,-396 upstream,-482 upstream {F56F10.4},{F56F10.1.1},{F56F10.1.2} 5872 CB6880_redo X 942752 1 G C 13 1.00 63 12 0 5 5 @CCCCC point 0 nongenic 145 downstream {F53H8.3} 5873 CB6880_redo X 942754 1 G C 13 1.00 63 12 0 5 5 @CCCCC point 0 nongenic 147 downstream {F53H8.3} 5874 CB6880_redo X 942757 1 T C 12 1.00 63 12 0 4 4 @CCCC point 0 nongenic 150 downstream {F53H8.3} 5875 CB6880_redo X 942760 1 G C 12 1.00 63 2 0 4 4 @CCCC point 0 nongenic 153 downstream {F53H8.3} 5879 CB6880_redo X 954099 1 A C 163 1.00 63 62 0 11 11 @cCcCCcCCcgg point 0 three_prime_UTR none {F53H8.2} 5880 CB6880_redo X 954101 1 C A 126 1.00 63 62 2 8 10 @AaAAaAAa.. point 0 three_prime_UTR none {F53H8.2} 5881 CB6880_redo X 1017350 1 T A 255 1.00 63 62 0 38 38 @AaaaaaAAaAaaaaaaaaaaaaAAAAaAAaaAaaaAAa point 0 missense AAC->ATC[Asn->Ile] {F55A4.2} 5882 CB6880_redo X 1047732 1 C T 255 1.00 63 62 0 42 42 @TTtTTtTTTTTTttttTTtTTttTtttttTTtTtTTttttTt point 0 nongenic,nongenic -1527 upstream,-6479 upstream {F55A4.8a},{K03E6.3} 5888 CB6880_redo X 1073732 1 G T 255 1.00 63 62 0 26 26 @tTTTtTTTTTttttTtttttTTttTt point 0 SNP none {haw99047} 5889 CB6880_redo X 1102542 1 C T 255 1.00 63 62 0 25 25 @ttTTtttttTttttTtttttttTTt point 0 five_prime_UTR,missense none,CCG->TCG[Pro->Ser] {F49E7.1b},{F49E7.1a} 5890 CB6880_redo X 1133524 1 T A 255 1.00 63 62 0 29 29 @aAAAaAaaaAaaAAAAAaaAAAAAAaAAa point 0 SNP none {haw99081} 5891 CB6880_redo X 1133556 1 T A 255 1.00 63 62 0 26 26 @AAAAaAAaaAAaAaAaAaAaAAaaaa point 0 SNP none {haw99082} 5895 CB6880_redo X 1226077 1 G C 138 1.00 63 62 0 6 6 @cccccc point 0 SNP none {haw99127} 5896 CB6880_redo X 1239148 1 C T 255 1.00 63 62 0 34 34 @ttTtttTTtTtTTtTTttTtTtTtttTTtTtttt point 0 SNP none {haw99128} 5897 CB6880_redo X 1308534 1 C A 255 1.00 63 62 0 24 24 @aaAAaaAAaaaaaAAAaAAAaAAA point 0 SNP none {haw99198} 5899 CB6880_redo X 1333863 1 A C 153 1.00 63 62 0 6 6 @CCCCCc point 0 SNP none {haw99214} 5905 CB6880_redo X 1472305 1 G T 255 1.00 63 62 0 25 25 @TTTtttTTtttTtttttTTtTTtTT point 0 SNP none {haw99409} 5912 CB6880_redo X 1519786 1 C A 255 1.00 63 62 0 26 26 @aAAaaAAAAaAaaaAaAaaaaAAaAa point 0 nongenic 1698 into {F09E10.8a,F09E10.8b} 5913 CB6880_redo X 1519787 1 C A 255 1.00 63 62 0 25 25 @AAaaAAAAaAaaaAaAaaaaAAaAa point 0 nongenic 1697 into {F09E10.8a,F09E10.8b} 5914 CB6880_redo X 1604340 1 G T 139 1.00 63 62 0 6 6 @tttttt point 0 nongenic -561 upstream {H11E01.3} 5916 CB6880_redo X 1615121 1 C A 48 1.00 63 22 0 6 6 @AAAaaa point 0 silent CCC->CCA[Pro->Pro] {H11E01.3} 5917 CB6880_redo X 1615122 1 A G 34 1.00 63 0 0 4 4 @Gggg point 0 missense AGT->GGT[Ser->Gly] {H11E01.3} 5938 CB6880_redo X 1717742 1 C A 255 1.00 63 62 0 19 19 @aAAaaAAAAAAaaaAaAaa point 0 SNP none {haw99773} 7581 CB6880_redo X 1753685 0 X X -1000 -999.99 -1000 -1000 9 -8 1 @,...,,,,,ttT indel 0 nongenic,nongenic -2728 upstream,-5112 upstream {Y75D11A.1},{Y75D11A.6} 5956 CB6880_redo X 1885828 1 C T 3 6.19 0 0 17 48 65 @,tttttt,ttttTTt,tttttttt,tTtttTttt,,tttTt,t,Tt,t,t,ttt,T.,,t.tt.t point 0 nongenic -6353 upstream {B0294.3} 5957 CB6880_redo X 1885991 1 C T 6 7.62 0 2 21 28 49 @t,tt,.,,,,.ttTT,,tTttTTtt,,.,ttt,tTtT,TTTtt,T,,,. point 0 nongenic -6190 upstream {B0294.3} 5961 CB6880_redo X 2002698 1 G C 3 1.50 63 0 1 3 4 @CC.c point 0 nongenic,nongenic -11438 upstream,213 downstream {Y102A11A.9.1},{Y40A1A.1} 5966 CB6880_redo X 2004106 1 A T 11 1.00 50 62 4 4 8 @...t.ttt point 0 nongenic -10030 upstream {Y102A11A.9.1} 5981 CB6880_redo X 2040665 1 A C 255 1.00 63 62 1 41 42 @CcCCcC,CccCCCcCCCccCCcCCCCCCcCcccccCcccccc point 0 missense GAT->GAG[Asp->Glu] {Y102A11A.8} 5983 CB6880_redo X 2210525 1 C T 255 1.00 63 62 0 32 32 @TTtttttTttTTTTtttTtTTttTTttttTtT point 0 nongenic,nongenic -5098 upstream,-5467 upstream {T14F9.4a},{T24C12.4} 5985 CB6880_redo X 2307676 1 G C 3 3.25 63 0 1 3 4 @C,cc point 0 nongenic 4601 into {T10H10.1} 5986 CB6880_redo X 2370396 1 G T 5 1.00 63 4 2 2 4 @,,tT point 0 nongenic,nongenic -4459 upstream,-5595 upstream {T24D8.6},{F47G3.3} 5987 CB6880_redo X 2370397 1 A G 5 1.00 63 4 0 4 4 @CCgG point 0 nongenic,nongenic -4460 upstream,-5594 upstream {T24D8.6},{F47G3.3} 5988 CB6880_redo X 2428246 1 T A 35 1.00 63 62 5 7 12 @AAaAAAA..... point 0 nongenic,nongenic -746 upstream,-795 upstream {T07D1.1a,T07D1.1b},{T07D1.1c} 5990 CB6880_redo X 2435478 1 G C 47 1.00 63 62 3 4 7 @,,,CCCc point 0 nongenic,nongenic,nongenic,nongenic -7978 upstream,3520 into,3675 into,3677 into {T07D1.1a,T07D1.1b},{T07D1.2.2},{T07D1.2.3},{T07D1.2.1} 5997 CB6880_redo X 2519178 1 T A 87 1.00 63 4 0 5 5 @aaaaA point 0 nongenic -3866 upstream {K02E10.8a,K02E10.8b} 5998 CB6880_redo X 2522234 1 C A 87 1.00 63 34 1 4 5 @aaAa, point 0 nongenic -6922 upstream {K02E10.8a,K02E10.8b} 6003 CB6880_redo X 2665339 1 A T 26 1.00 63 62 4 6 10 @..,,TttttT point 0 nongenic,nongenic -2852 upstream,-971 upstream {C09B7.2},{F54G2.1a} 6004 CB6880_redo X 2665340 1 C A 201 1.00 63 26 0 9 9 @aAAAaaaaA point 0 nongenic,nongenic -2851 upstream,-972 upstream {C09B7.2},{F54G2.1a} 6010 CB6880_redo X 2871277 1 C T 255 1.00 63 62 0 27 27 @TTtTTtTTTTtttTTtTTTtTTTTtTT point 0 nongenic -222 upstream {F53B3.3} 6011 CB6880_redo X 2894432 1 A T 196 1.62 63 62 0 10 10 @ttttTTTtTT point 0 SNP none {snp_B0410[1]} 7589 CB6880_redo X 3007741 0 X X -1000 -999.99 -1000 -1000 27 -19 8 @,...,.,,..,,TT,..t..,,,,,,,,.. indel 0 nongenic,nongenic -1750 upstream,-3945 upstream {Y48D7A.1},{Y41G9A.6} 6016 CB6880_redo X 3027787 1 C G 153 1.00 63 62 0 9 9 @ggggggggg point 0 SNP none {haw101125} 6021 CB6880_redo X 3158188 1 C A 20 1.00 63 12 1 3 4 @.Aaa point 0 nongenic,nongenic -1741 upstream,-5734 upstream {C15C7.2.1},{C15C7.5} 6022 CB6880_redo X 3158207 1 C A 254 1.00 63 62 0 12 12 @AaaaaAAAAAAa point 0 nongenic,nongenic -1722 upstream,-5753 upstream {C15C7.2.1},{C15C7.5} 6027 CB6880_redo X 3207501 1 C T 91 2.00 63 4 1 4 5 @,Tttt point 0 nongenic 692 into {F28B4.4} 6028 CB6880_redo X 3218524 1 C G 71 1.00 63 32 1 5 6 @GGGGg. point 0 SNP none {haw101344} 6029 CB6880_redo X 3218525 1 T C 32 1.00 63 62 2 4 6 @CCCc., point 0 SNP none {haw101345} 6031 CB6880_redo X 3225118 1 T G 179 1.00 63 62 0 8 8 @gggggGGG point 0 nongenic -4758 upstream {F28B4.2a} 6032 CB6880_redo X 3237694 1 A G 255 1.00 63 62 0 56 56 @GgGgGGGGGgGggggGGgGGGGGgGggggGGGgGGggGggGgggGGGGGggGgggg point 0 missense,SNP TTT->TCT[Phe->Ser],none {F40F4.6},{haw101350} 7593 CB6880_redo X 3293918 0 X X -1000 -999.99 -1000 -1000 5 -2 3 @,..,,tttTt indel 0 nongenic -3728 upstream {K09C4.2} 6033 CB6880_redo X 3367002 1 C G 255 1.00 63 62 0 42 42 @GGGggggGGGggggGggGGgGGGGGGGGgGGGgggGggGgGg point 0 nongenic,nongenic -1945 upstream,-4519 upstream {ZK563.2},{ZK816.5} 6034 CB6880_redo X 3367003 1 G C 255 1.00 63 62 0 41 41 @CCccccCCCccccCccCCcCCCCCCCCcCCCcccCccCcCc point 0 nongenic,nongenic -1944 upstream,-4520 upstream {ZK563.2},{ZK816.5} 6035 CB6880_redo X 3408399 1 T C 255 1.62 63 62 0 33 33 @cCccCCCCcCCCcCcCCcCcCCcCCcCCCcccC point 0 silent ATT->ATC[Ile->Ile] {C04F6.1.1,C04F6.1.2,C04F6.1.3} 6038 CB6880_redo X 3413858 1 C G 54 1.00 63 20 1 3 4 @GGG, point 0 missense AGG->AGC[Arg->Ser] {C04F6.5} 6041 CB6880_redo X 3631566 1 G A 57 3.31 63 62 43 110 153 @,,,,,,,...A.,aa,.,A,.,...,....,,..A,.a..A,A,,A,aa,,,AAAAAAAAAAAA,AAAAaaAaaaAAAAAAAaAAAAAaaaAAAAaAAA point 0 nongenic,nongenic 693 downstream,976 downstream {C18B2.1},{R11G1.3} 6042 CB6880_redo X 3631670 1 T G 130 3.69 63 62 24 120 144 @,,.,,Gg,G,G,,G,,g.GGG,GGGG,G,GGGGG,GGGGGGgGGGGG,GGGGGGGGGgGgGGggGgggGG,GGGGGGGg,,GG,G.GGGGGgGGGGGgg point 0 SNP none {uCE6-825} 6043 CB6880_redo X 3631690 1 C G 183 3.56 63 62 82 173 255 @,G,,,,G,GGGG.G,GGG,,G,G,GG,,.GgGGggGggg,,,GG,,,G,.,,GG,,.,,G,GgGGGG,gggGG,gg,g,GGG,gggGG.gG,GGG,ggg point 0 SNP none {haw101541} 6044 CB6880_redo X 3631792 1 G T 91 1.06 63 62 47 135 182 @.t.t..,,,ttT,TTT.TtttT.tt.TT.tTTT..ttt.tTT.ttTT,T,ttttTTTttTT,t.tttttTTT.ttTTtt.,tttT.t,T,.T,t.ttt. point 0 SNP none {haw101542} 6045 CB6880_redo X 3653458 1 T C 255 1.00 63 62 0 41 41 @CccCCcCcCcCCccCCccCccccCCCcCCccCcccccCCcC point 0 SNP none {haw101553} 6048 CB6880_redo X 3802908 1 G C 9 1.00 63 4 2 3 5 @.,cCc point 0 nongenic,nongenic,nongenic -155 upstream,-170 upstream,-2161 upstream {F35A5.8b},{F35A5.8a},{F35A5.2} 6049 CB6880_redo X 3811358 1 A C 32 1.00 63 42 2 5 7 @,,ccCCC point 0 nongenic 3909 into {F35A5.1} 6050 CB6880_redo X 3811996 1 T G 235 1.19 63 62 0 11 11 @gGggggGggGG point 0 nongenic 4398 into {F35A5.1} 6064 CB6880_redo X 3812057 1 C T 38 1.25 63 62 6 7 13 @.,t,t,tttTt.. point 0 nongenic 4337 into {F35A5.1} 6065 CB6880_redo X 3812067 1 A T 66 1.12 63 62 9 14 23 @,t,t,tttTt...tttTTt.,,t point 0 nongenic 4327 into {F35A5.1} 6066 CB6880_redo X 3812100 1 T A 63 1.06 63 62 10 17 27 @...aaaAAa.,,aAAa,GAA,,A,AaA point 0 nongenic 4294 into {F35A5.1} 6071 CB6880_redo X 3867515 1 A G 3 1.00 63 54 3 5 8 @,.,gggtg point 0 nongenic -9736 upstream {ZC64.3a,ZC64.3b,ZC64.3c} 6072 CB6880_redo X 3900889 1 G C 44 1.00 63 6 0 4 4 @cCCC point 0 nongenic,nongenic -3681 upstream,-5230 upstream {T22B2.4a},{F47F2.3} 6074 CB6880_redo X 3902119 1 A C 143 1.00 63 62 0 8 8 @cccccccc point 0 nongenic,nongenic -2451 upstream,-6460 upstream {T22B2.4a},{F47F2.3} 6077 CB6880_redo X 3903048 1 T C 156 1.00 63 62 0 9 9 @cccccCCCC point 0 nongenic,nongenic -1522 upstream,-7389 upstream {T22B2.4a},{F47F2.3} 6078 CB6880_redo X 3924055 1 A G 255 1.00 63 62 0 26 26 @GggGGGgGGgGggGgGggGgGggggg point 0 nongenic,nongenic -2005 upstream,841 downstream {T22B2.1},{T22B2.2} 6079 CB6880_redo X 3941047 1 G A 255 1.00 63 62 0 50 50 @AAaaAaAAAaAaaAaaAAaaaaaAaaAaaAaAaaAAAaaaAAAAAAAaaa point 0 silent ATC->ATT[Ile->Ile] {T19D2.2} 6081 CB6880_redo X 4025107 1 A G 255 1.00 63 62 0 41 41 @GgggGgggGcGgggGgggGGggGGgGggGGGgGggggGggg point 0 silent AAA->AAG[Lys->Lys] {R02E12.8} 6082 CB6880_redo X 4026006 1 A C 155 6.81 63 62 1 19 20 @CCCcCCCCCccccCccc,cC point 0 nongenic 444 downstream {R02E12.8} 6135 CB6880_redo X 4241735 1 A C 249 1.62 63 62 0 16 16 @ccCcccCCcccccccc point 0 SNP none {haw101997} 6136 CB6880_redo X 4241797 1 A G 87 1.00 40 62 0 7 7 @ggggggg point 0 nongenic -5974 upstream {W01H2.3a} 6138 CB6880_redo X 4241827 1 T C 112 1.56 34 62 0 12 12 @ccccCCCCCCCC point 0 nongenic -6004 upstream {W01H2.3a} 6139 CB6880_redo X 4241844 1 G A 47 1.81 34 62 8 9 17 @a,A,A,AAAA,,,,AA, point 0 nongenic -6021 upstream {W01H2.3a} 6141 CB6880_redo X 4241902 1 T C 45 4.00 32 44 0 8 8 @CCcCCCCC point 0 nongenic -6079 upstream {W01H2.3a} 6143 CB6880_redo X 4242071 1 T C 15 3.00 0 14 0 7 7 @CCCCCCC point 0 nongenic -6248 upstream {W01H2.3a} 6144 CB6880_redo X 4242094 1 G A 15 3.12 0 14 0 7 7 @AAAAAAA point 0 nongenic -6271 upstream {W01H2.3a} 6145 CB6880_redo X 4242110 1 A C 95 2.44 32 62 1 10 11 @CCCCCCCCCt. point 0 nongenic -6287 upstream {W01H2.3a} 6148 CB6880_redo X 4346150 1 T G 45 1.00 63 28 1 4 5 @.gGgg point 0 nongenic,nongenic -4322 upstream,537 downstream {F14H12.2},{F14H12.3} 6151 CB6880_redo X 4490691 1 C G 95 1.00 63 26 1 5 6 @gGGgG. point 0 nongenic,nongenic -10599 upstream,933 downstream {F02E8.6},{F46H6.5} 6152 CB6880_redo X 4490692 1 A C 95 1.00 63 26 1 5 6 @cCCcC. point 0 nongenic,nongenic -10600 upstream,932 downstream {F02E8.6},{F46H6.5} 6155 CB6880_redo X 4513922 1 C T 187 1.00 63 62 0 12 12 @tttttttttttt point 0 SNP none {snp_F46H6[6]} 6156 CB6880_redo X 4548317 1 G A 5 1.00 63 18 1 3 4 @.aaa point 0 nongenic -6347 upstream {C07A12.1b} 6158 CB6880_redo X 4548321 1 T A 57 1.00 63 18 1 4 5 @a.aAa point 0 nongenic -6343 upstream {C07A12.1b} 7608 CB6880_redo X 4556555 0 X X -1000 -999.99 -1000 -1000 2 0 2 @.,Tt indel 0 nongenic,nongenic,nongenic -1889 downstream,-1890 downstream,-554 upstream {C07A12.1a},{C07A12.1b},{C07A12.1c} 6160 CB6880_redo X 4565293 1 A C 18 1.00 63 62 5 5 10 @CCCCc...,, point 0 five_prime_UTR none {C05E11.5} 6165 CB6880_redo X 4577179 1 A T 255 1.00 63 62 0 33 33 @tttttTtTtttttTTTTtTTTTtTTttTTtTTt point 0 SNP none {haw102400} 6166 CB6880_redo X 4578097 1 T C 255 1.00 63 62 0 33 33 @CcccCcCcCCccCcccCccCCccCCCCcCcccC point 0 nongenic -1381 upstream {C05E11.3} 6167 CB6880_redo X 4645170 1 C A 255 1.00 63 62 0 32 32 @AaAAaAaaAAAaaAaaAaAAAaAAAaaAAaAA point 0 missense,SNP GCT->TCT[Ala->Ser],none {C46C11.4},{haw102467,pas15116} 6176 CB6880_redo X 4839664 1 T C 255 1.00 63 62 0 55 55 @cCcCcCCccCCcCCCccccccCcCCCccCCCcccCcCCcccCcCcCcccCCCCCc point 0 missense,SNP ACC->GCC[Thr->Ala],none {F39C12.1},{haw102674,pas15120} 6177 CB6880_redo X 4938561 1 G C 11 1.00 63 0 1 3 4 @CCC, point 0 nongenic,nongenic -8840 upstream,-9456 upstream {K05B2.5b,K05B2.5c},{M03F4.3a,M03F4.3c.2} 6178 CB6880_redo X 4971580 1 C T 255 1.00 63 62 0 34 34 @TTtTttTttTttTttTTtttTTtTTtTTtTTTTT point 0 nongenic,nongenic,nongenic -699 upstream,-715 upstream,989 downstream {M03F4.7a},{M03F4.7b},{ZC8.6} 6179 CB6880_redo X 4971581 1 A C 255 1.00 63 62 0 32 32 @cCccCccCccCccCCcccCCcCCcCCcCCCCC point 0 nongenic,nongenic,nongenic -700 upstream,-716 upstream,988 downstream {M03F4.7a},{M03F4.7b},{ZC8.6} 6183 CB6880_redo X 5004530 1 G C 15 3.00 63 0 0 6 6 @cccccc point 0 nongenic -707 upstream {ZC8.1} 7613 CB6880_redo X 5056499 1 X X -1000 -999.99 -1000 -1000 73 -50 23 @,,,,,,,,,,N,,,,,,,,,,,,,,,...............,,,C,C,....,.,,,,..,............... indel -1 nongenic -832 upstream {Y64H9A.1} 6186 CB6880_redo X 5123322 1 T G 255 1.00 63 62 0 37 37 @ggggGGgGgGggggggggggGgGGgggGgggggGgGg point 0 nongenic,nongenic -15637 upstream,-6482 upstream {C31H2.1a,C31H2.1b},{C42D8.8b.1} 6188 CB6880_redo X 5134151 1 C G 255 1.00 63 62 0 32 32 @ggGgggGGggggGgGgGGgggggggggGgggg point 0 nongenic,nongenic -17311 upstream,-4808 upstream {C42D8.8b.1},{C31H2.1a,C31H2.1b} 6189 CB6880_redo X 5134152 1 G C 255 1.00 63 62 0 32 32 @cCcccCCccccCcCcCCcccccccccCccccc point 0 nongenic,nongenic -17312 upstream,-4807 upstream {C42D8.8b.1},{C31H2.1a,C31H2.1b} 6190 CB6880_redo X 5140286 1 T A 15 1.00 63 54 2 3 5 @..aaa point 0 nongenic,nongenic -23446 upstream,1327 into {C42D8.8b.1},{C31H2.1a,C31H2.1b} 6193 CB6880_redo X 5140410 1 A G 7 1.00 63 0 2 2 4 @,,GG point 0 nongenic,nongenic -23570 upstream,1451 into {C42D8.8b.1},{C31H2.1a,C31H2.1b} 6194 CB6880_redo X 5140412 1 G T 32 1.00 63 0 2 2 4 @,,TT point 0 nongenic,nongenic -23572 upstream,1453 into {C42D8.8b.1},{C31H2.1a,C31H2.1b} 6210 CB6880_redo X 5403139 1 C G 3 3.12 0 0 4 6 10 @,,,gggggg. point 0 nongenic,nongenic,nongenic -2587 upstream,1494 into,1688 into {C03F11.3},{C03F11.4.2,C03F11.4.3},{C03F11.4.1} 7617 CB6880_redo X 5508058 4 X X -1000 -999.99 -1000 -1000 8 -5 3 @,,....., indel -4 SNP none {uCE6-931} 6213 CB6880_redo X 5599499 1 C G 41 1.00 63 0 2 5 7 @GGGGG.. point 0 nongenic,nongenic -207 upstream,-5036 upstream {F14D12.5},{F14D12.1a,F14D12.1b} 6215 CB6880_redo X 5634541 1 T A 35 1.00 63 62 1 3 4 @aaa, point 0 nongenic -3305 upstream {T22B7.8} 6220 CB6880_redo X 5857436 1 T G 255 1.00 63 62 0 20 20 @GgGgggGGGGgggGgggGGg point 0 nongenic,nongenic -3221 upstream,-5280 upstream {W06B11.4},{F49E10.5} 6221 CB6880_redo X 5883992 1 C T 255 1.00 63 62 0 28 28 @tttttTtTtttTTTttttTtTTtTTTtT point 0 SNP none {haw103817} 6223 CB6880_redo X 6057717 1 C T 255 1.00 63 62 0 35 35 @TTTTTTTTTTttttttttttTtTTtttttTTtTtT point 0 nongenic,nongenic -496 upstream,411 downstream {C45B2.5.1,C45B2.5.2},{C45B2.6} 6226 CB6880_redo X 6092456 1 A T 255 1.00 63 62 0 23 23 @TtTtttTTTTtTtTtttTTTTtt point 0 nongenic,nongenic,nongenic,nongenic -371 upstream,-694 upstream,-789 upstream,-803 upstream {C15H9.6.1},{C15H9.6.2},{C15H9.5.1},{C15H9.5.2} 6227 CB6880_redo X 6093387 1 G A 255 1.00 63 62 0 39 39 @aAAAAaAaAAAaaAaaaAaaAAaAAaAAAaaaAaAAAaa point 0 nongenic,nongenic,nongenic,nongenic -1302 upstream,-7789 upstream,128 into,142 into {C15H9.6.1},{C15H9.4},{C15H9.5.2},{C15H9.5.1} 6228 CB6880_redo X 6107174 1 T A 255 1.00 63 62 0 35 35 @aAaAAAaaAaAAaAAAAaAAaaAAAaAaAaaAAaa point 0 nongenic 289 into {C15H9.7} 6231 CB6880_redo X 6283375 1 C G 10 1.00 63 56 2 3 5 @,,ggG point 0 silent CCG->CCC[Pro->Pro] {T07H6.4} 6236 CB6880_redo X 6287251 1 T A 16 5.12 0 0 0 9 9 @aaaaaaaaa point 0 nongenic,nongenic,nongenic -1120 upstream,-5833 upstream,828 into {T07H6.4},{T07H6.2},{T07H6.5} 6238 CB6880_redo X 6287308 1 T A 42 3.50 40 44 0 4 4 @aaaa point 0 nongenic,nongenic,nongenic -1177 upstream,-5776 upstream,885 into {T07H6.4},{T07H6.2},{T07H6.5} 6239 CB6880_redo X 6287344 1 C A 24 4.00 50 62 3 3 6 @.a.aa, point 0 nongenic,nongenic,nongenic -1213 upstream,-5740 upstream,921 into {T07H6.4},{T07H6.2},{T07H6.5} 6241 CB6880_redo X 6287403 1 T A 3 6.19 0 0 0 12 12 @AGaaaaaaaaaa point 0 nongenic,nongenic,nongenic -1272 upstream,-5681 upstream,980 into {T07H6.4},{T07H6.2},{T07H6.5} 6242 CB6880_redo X 6287441 1 T A 3 5.38 0 0 0 11 11 @aGAaaaaaaaa point 0 nongenic,nongenic,nongenic -1310 upstream,-5643 upstream,1018 into {T07H6.4},{T07H6.2},{T07H6.5} 163815 CB6880_redo X 6287475 330 - - 0 0.00 0 0 0 0 0 uncovered 0 uncovered non-exonic, 3733 to 4063 bp into {T07H6.5} 6244 CB6880_redo X 6308961 1 C T 255 1.00 63 62 0 25 25 @tttTTTTtTTtTttttttttTtTTt point 0 nongenic -2711 upstream {T10E10.3} 6245 CB6880_redo X 6368915 1 C T 255 1.00 63 62 0 23 23 @tttttttTttttTtTTttTttTT point 0 nongenic,nongenic -4690 upstream,1344 into {C03B1.1},{C03B1.2} 6246 CB6880_redo X 6412638 1 A T 255 1.00 63 62 0 23 23 @TTTtTtttTTTTttTTTtTTTtt point 0 SNP none {haw104221} 6247 CB6880_redo X 6518614 1 G A 255 1.00 63 62 0 39 39 @AAAaAAaAAaaaAaaaaaaaaaAAAaAaAAAaaaAaaaA point 0 nongenic -449 upstream {F22A3.1b} 6248 CB6880_redo X 6526168 1 C T 255 1.00 63 62 0 35 35 @TTtTTTTTtTTTtTTtttttttTttttTTtttttT point 0 nongenic 1849 into {F22A3.5} 6257 CB6880_redo X 6775993 1 C T 255 1.00 63 62 0 35 35 @TtTtTTTTttTTttTtTtTTTTttTTtttttTttt point 0 nongenic,nongenic -4392 upstream,-7219 upstream {R03E9.4},{H22K11.3} 6258 CB6880_redo X 6792031 1 G C 255 1.00 63 62 0 47 47 @cCccCccCCccCCCcCCccCCcCCCCCCcccCCCcCcCcccCCCCcc point 0 missense GAG->GAC[Glu->Asp] {H22K11.1} 6265 CB6880_redo X 6917321 1 C T 255 1.00 63 62 0 25 25 @ttTttTTTttTTTTttTttttTTtT point 0 silent CCC->CCT[Pro->Pro] {F14B8.1a,F14B8.1b.1,F14B8.1b.2} 7626 CB6880_redo X 6917594 0 X X -1000 -999.99 -1000 -1000 4 0 4 @,.,,GGGg indel 0 nongenic,nongenic,nongenic -3096 downstream,-312 downstream,-3351 downstream {F14B8.1b.2},{F14B8.1b.1},{F14B8.1a} 6266 CB6880_redo X 6968330 1 C T 255 1.00 63 62 0 19 19 @NtttTTtTTTTTtTtttTT point 0 nongenic,nongenic,nongenic -11978 upstream,-23377 upstream,1010 into {C16E9.4a},{F01E11.1},{F01E11.3} 6289 CB6880_redo X 7077720 1 T C 169 6.31 63 62 85 170 255 @CCCCCCCCCCCCCCCCCCcccccc.cccccccccCCGCCCCCGGCCCC,CCCCCCccccccc.cccccccccccccccCCCCCCCCCCCCCCCCCCCCC point 0 nongenic,nongenic -2432 upstream,-7596 upstream {B0403.6},{Y1B5A.1} 7629 CB6880_redo X 7077942 0 X X -1000 -999.99 -1000 -1000 18 11 29 @,,,gTT,,,..,TT,,,,,,,T,,cN indel 5 nongenic,nongenic -2654 upstream,-7375 upstream {B0403.6},{Y1B5A.1} 6292 CB6880_redo X 7078149 1 A T 15 6.25 31 56 246 9 255 @,,GT.....,......,,,,,T.........t,,,,,,,,,T,........t..t............TT,,,,TTT,,,...........ttt....,. point 0 nongenic,nongenic -2861 upstream,-7167 upstream {B0403.6},{Y1B5A.1} 6294 CB6880_redo X 7078203 1 A G 61 8.38 61 62 93 162 255 @GGGG,Ggg..gG,GGGGGTggggggGGGGG.ggGGGGGGgggGG,GGGGggggtggggGGGTGGGggggggg.gggGGGGGGG.ggggggggg.GGGGG point 0 nongenic,nongenic -2915 upstream,-7113 upstream {B0403.6},{Y1B5A.1} 6295 CB6880_redo X 7078278 1 G A 30 7.81 33 62 302 -47 255 @,A,a....,.aT,aaa.,.a.a..a.a.A.a.ATAAa.a.Aa,,AA.aa.aaaaa.....aaaaaaAAAaaa..aaaa.aaa.aaa.aaa.a.a..aa. point 0 nongenic,nongenic -2990 upstream,-7038 upstream {B0403.6},{Y1B5A.1} 6300 CB6880_redo X 7078503 1 A G 4 8.31 10 24 77 178 255 @G,GGGTGTtg.gGGTGGGGggg.g.GGGGGGGg..gGGG,GGggg.gGGGGGGG,GGGG,G,GGGGGGGGGG,GGGGG.g.GGGG.gGGGG.gg.GG.g point 0 nongenic,nongenic -3215 upstream,-6813 upstream {B0403.6},{Y1B5A.1} 6301 CB6880_redo X 7078663 1 A G 6 9.00 22 26 60 195 255 @...G,...gG,G,.G.,G.GGGGGGGg..g,Gg.GGGGgg.gGGGGGGGggGG,GGGgg.,GGggggGG.gggGGGGgggggggggggg,GGGggg.gg point 0 nongenic,nongenic -3375 upstream,-6653 upstream {B0403.6},{Y1B5A.1} 6302 CB6880_redo X 7078698 1 T A 3 5.44 0 18 66 178 244 @,Aa.A,.AA.,.A,,,..,.GA.Aa,,.a.,.AGGaa..AG.aa,a.GGGA,.agG.ag..,.aa,A,,G..gaGG.....gG...aagAAag.g.A,a point 0 nongenic,nongenic -3410 upstream,-6618 upstream {B0403.6},{Y1B5A.1} 6303 CB6880_redo X 7078738 1 T G 3 7.25 24 16 85 103 188 @,,AAaa.aA,aggg,AA.a,A,A,a,AAGGAA.aaggaggaG,AG....aGGaa.a.a..aaa..AGAAGAga...a.agAA,,GA,A,A,AA,AGaaa point 0 nongenic,nongenic -3450 upstream,-6578 upstream {B0403.6},{Y1B5A.1} 6305 CB6880_redo X 7078863 1 A G 5 8.88 0 24 76 179 255 @,G.,GG.G,G,..gGG..GGGGgggggGG,GGggg.gGGGGGG.,GGG,,,GgG,,,GGggggGGg.ggGGGgggg,,Gg.gGGGGGGGgggggggGGG point 0 nongenic,nongenic -3575 upstream,-6453 upstream {B0403.6},{Y1B5A.1} 6307 CB6880_redo X 7079018 1 G A 3 8.06 28 14 94 139 233 @,Aaaaaa,AAA,aa.aaaaaaAAa.aa,A,,Aa.aaaa..aaA.aAaa.Aa.aa.aaAAAAAA.ataaaAAA..aATaaa.AA,,.a..a..aa.a.., point 0 nongenic,nongenic -3730 upstream,-6298 upstream {B0403.6},{Y1B5A.1} 6308 CB6880_redo X 7079063 1 A G 3 8.88 0 16 51 204 255 @,G..g..GGGGgGGg.GGGGGGGGgGGG,,,ggGG,GgggggGGGGGgg.GGGGggggG,ggggg.ggGGGGgggg.gggG,GGggg.gggggg.gggg point 0 nongenic,nongenic -3775 upstream,-6253 upstream {B0403.6},{Y1B5A.1} 6312 CB6880_redo X 7224737 1 A T 255 1.00 63 62 0 32 32 @tttTttTTTTTtTTTttTTttTtTTTTtttTT point 0 nongenic 2032 into {ZK867.1a,ZK867.1b,ZK867.1c,ZK867.1d} 6315 CB6880_redo X 7247377 1 C A 255 1.00 63 62 0 31 31 @AaAAAAAaAaAAAaaaaaaAAaaaAaAAAAa point 0 SNP none {haw104705} 6316 CB6880_redo X 7255495 1 T G 3 1.00 63 0 2 5 7 @G.gg.gg point 0 nongenic,nongenic -753 upstream,380 downstream {F46H5.4},{F46H5.5} 6325 CB6880_redo X 7361569 1 A G 58 2.12 63 22 1 6 7 @GgGGG,g point 0 nongenic -3945 upstream {C56G3.2} 6326 CB6880_redo X 7361576 1 A C 14 2.50 63 0 0 4 4 @CCCc point 0 nongenic -3938 upstream {C56G3.2} 6327 CB6880_redo X 7361578 1 G C 53 2.00 63 2 0 6 6 @CCCcCC point 0 nongenic -3936 upstream {C56G3.2} 6328 CB6880_redo X 7362977 1 A G 180 3.12 63 62 0 23 23 @ggggggggggggGGggGggggGg point 0 nongenic -2537 upstream {C56G3.2} 6329 CB6880_redo X 7464543 1 T G 35 1.00 63 62 2 5 7 @.,GGGGG point 0 nongenic,nongenic -858 upstream,658 downstream {K08A8.2a.1,K08A8.2b.2},{K08A8.3} 6334 CB6880_redo X 7507748 1 C A 19 1.00 63 4 0 4 4 @aAaa point 0 nongenic,nongenic,nongenic -1166 upstream,209 downstream,83 downstream {F48E3.7},{F48E3.8b,F48E3.8c},{F48E3.8a} 6335 CB6880_redo X 7507749 1 A G 34 1.00 63 4 0 6 6 @gGggGG point 0 nongenic,nongenic,nongenic -1167 upstream,208 downstream,82 downstream {F48E3.7},{F48E3.8b,F48E3.8c},{F48E3.8a} 6336 CB6880_redo X 7527774 1 C T 197 1.00 63 62 0 16 16 @tttttttttttttttt point 0 SNP none {haw104910} 7637 CB6880_redo X 7559950 0 X X -1000 -999.99 -1000 -1000 6 -1 5 @,....,ccC indel 0 nongenic,nongenic -126 upstream,-950 upstream {F08C6.5},{PDB1.1b.1} 6337 CB6880_redo X 7566551 1 T C 255 1.00 63 62 0 35 35 @ccCCCcCCCCcCccCCccCcccCCCcCcccCccCc point 0 missense,SNP GTT->GCT[Val->Ala],none {F08C6.3},{haw104923} 6340 CB6880_redo X 7588883 1 T C 255 1.00 63 62 0 40 40 @ccCcCcCCCCCCcccCCCCCCCCCCCCcccCCCCccCCCc point 0 missense TCA->CCA[Ser->Pro] {F08C6.1a.1,F08C6.1a.2,F08C6.1c} 7640 CB6880_redo X 7644183 0 X X -1000 -999.99 -1000 -1000 2 0 2 @.,GGg indel 0 nongenic,nongenic -6891 upstream,-7152 upstream {F27D9.3},{F26A10.2} 6343 CB6880_redo X 7666636 1 C T 255 1.00 63 62 0 23 23 @tTTtTtTTTTttTTtTTtTTTTT point 0 nongenic,nongenic,nongenic -1779 upstream,-6298 upstream,824 into {F27D9.6},{F27D9.2},{F27D9.7} 6344 CB6880_redo X 7719005 1 A C 14 1.00 63 4 5 12 17 @,C,,,cc.cccgCcCCc point 0 nongenic,nongenic -208 upstream,-8346 upstream {K09F5.6},{K09F5.4} 6345 CB6880_redo X 7729211 1 C T 255 1.00 63 62 0 40 40 @TTTTTtttttTTTTTTTTTTTtTTtTTTTTttTTTttTtt point 0 silent CTC->CTT[Leu->Leu] {K09F5.2} 6346 CB6880_redo X 7764853 1 T A 225 2.00 63 62 0 10 10 @aAAaaaaaaA point 0 nongenic,nongenic,nongenic -6756 upstream,1693 into,1703 into {C47C12.4},{C47C12.6.1,C47C12.6.2},{C47C12.6.3} 6352 CB6880_redo X 7771370 1 G A 181 1.00 63 62 0 11 11 @aaaaaaaaaaa point 0 nongenic,nongenic,nongenic,nongenic -13273 upstream,3389 into,3390 into,3488 into {C47C12.4},{C47C12.6.2},{C47C12.6.3},{C47C12.6.1} 6353 CB6880_redo X 7771404 1 G A 60 1.00 63 44 1 3 4 @aaa, point 0 nongenic,nongenic,nongenic,nongenic -13307 upstream,3355 into,3356 into,3454 into {C47C12.4},{C47C12.6.2},{C47C12.6.3},{C47C12.6.1} 6354 CB6880_redo X 7771436 1 A T 126 1.19 63 62 0 6 6 @TTTTTT point 0 nongenic,nongenic,nongenic,nongenic -13339 upstream,3323 into,3324 into,3422 into {C47C12.4},{C47C12.6.2},{C47C12.6.3},{C47C12.6.1} 6360 CB6880_redo X 7825550 1 G C 4 1.00 63 4 2 3 5 @.CC.c point 0 three_prime_UTR none {R03G5.1a.1,R03G5.1c.1,R03G5.1c.2} 6361 CB6880_redo X 7825551 1 A G 21 1.00 63 4 1 3 4 @CC.g point 0 three_prime_UTR none {R03G5.1a.1,R03G5.1c.1,R03G5.1c.2} 6363 CB6880_redo X 7832120 1 C T 255 1.00 63 62 0 19 19 @TttTTttTtTTttTTTTtT point 0 nongenic,nongenic,nongenic,nongenic,nongenic -6758 upstream,1791 into,1815 into,1858 into,2358 into {C54D2.2},{C54D2.4b.2},{C54D2.4b.3},{C54D2.4a},{C54D2.4b.1} 6365 CB6880_redo X 7866250 1 A G 5 1.00 63 54 2 3 5 @GgG., point 0 SNP none {snp_C54D2[7]} 6366 CB6880_redo X 7872981 1 C A 255 1.00 63 62 0 30 30 @AaAaaAAAAAaAAAaaaaaaaaaAaaAaAA point 0 SNP none {haw105178} 6367 CB6880_redo X 7927043 1 C T 255 1.00 63 62 0 28 28 @tTtTTtTtTtTTTTttTTTTtTtTTTtT point 0 nongenic,nongenic -3639 upstream,578 downstream {C14F5.2},{C09C7.1} 6369 CB6880_redo X 7984030 1 C T 26 1.00 63 18 1 4 5 @TTTt. point 0 nongenic,nongenic -1896 upstream,-2009 upstream {F45E1.4},{F45E1.6.1} 6370 CB6880_redo X 7984031 1 T A 18 1.00 63 26 1 3 4 @AAa. point 0 nongenic,nongenic -1895 upstream,-2010 upstream {F45E1.4},{F45E1.6.1} 6374 CB6880_redo X 8029563 1 C T 235 1.00 63 62 0 12 12 @ttTttttttttT point 0 SNP none {haw105378} 6375 CB6880_redo X 8033820 1 G C 255 1.00 63 62 0 15 15 @CcccccCCccccccC point 0 missense GCC->GGC[Ala->Gly] {C18A11.6} 6376 CB6880_redo X 8076590 1 A T 47 1.00 63 62 0 4 4 @ccTt point 0 nongenic -1097 upstream {C46F2.1} 6377 CB6880_redo X 8113367 1 C T 255 1.00 63 62 0 28 28 @TtTTTtttTTtttTttTtTTtTTtttTt point 0 silent GAC->GAT[Asp->Asp] {K07E3.1} 6379 CB6880_redo X 8182016 1 G T 60 8.50 63 62 23 26 49 @,,t.TtT.TttttTTtTTTTTttttt,t..T....T,,.t,.,,.,.,. point 0 nongenic -433 upstream {C17H11.4} 6381 CB6880_redo X 8319668 1 C T 151 2.00 63 62 12 40 52 @TtttTtt,tT,,tT,TTtt,T,tTtTTt,.T,tTTtT,TTtTt,Tt,ttttt point 0 silent CAG->CAA[Gln->Gln] {R09F10.7} 7651 CB6880_redo X 8325358 0 X X -1000 -999.99 -1000 -1000 4 -2 2 @,.,,TTtt indel 0 inframe none {R09F10.8.1,R09F10.8.2} 7652 CB6880_redo X 8374022 0 X X -1000 -999.99 -1000 -1000 2 -1 1 @,. indel 0 nongenic,nongenic -1999 upstream,-393 downstream {F40B5.1},{F40B5.3} 6388 CB6880_redo X 8408804 1 T C 48 1.00 63 0 0 6 6 @cccCCc point 0 nongenic -496 upstream {F41D9.5} 6390 CB6880_redo X 8502322 1 G T 116 1.00 63 0 0 6 6 @TttTtt point 0 nongenic,nongenic -5491 upstream,232 downstream {H03E18.1.1},{T01B10.1} 6395 CB6880_redo X 8602905 1 T G 183 1.12 63 62 0 9 9 @GGGggGGgG point 0 nongenic,nongenic 558 downstream,779 downstream {H35N09.2},{F18E9.1} 6401 CB6880_redo X 8603040 1 A G 79 1.00 63 10 1 7 8 @g.GggggG point 0 nongenic,nongenic 423 downstream,914 downstream {H35N09.2},{F18E9.1} 6402 CB6880_redo X 8603049 1 A G 183 1.00 63 62 2 12 14 @..GggggGGGGggG point 0 nongenic,nongenic 414 downstream,923 downstream {H35N09.2},{F18E9.1} 6403 CB6880_redo X 8629824 1 A C 255 1.00 63 62 0 27 27 @CcCCcCCCCCCccccccCcccccccCC point 0 SNP none {haw105786} 6404 CB6880_redo X 8630462 1 C T 51 1.00 63 24 1 4 5 @TttT. point 0 SNP none {haw105788} 6409 CB6880_redo X 8900504 1 C A 6 1.00 63 54 3 4 7 @.,,Aaaa point 0 nongenic -7485 upstream {D1009.3a,D1009.3b} 6411 CB6880_redo X 8941347 1 C T 87 1.00 63 62 3 7 10 @.,,TTTtttt point 0 missense CGA->CAA[Arg->Gln] {D1073.1a,D1073.1b} 6412 CB6880_redo X 8984740 1 A G 42 1.00 63 8 0 5 5 @gcGgg point 0 nongenic,nongenic -3334 upstream,449 downstream {C24A3.6.1,C24A3.6.2},{C48C5.1} 6415 CB6880_redo X 9078276 1 G A 16 1.00 63 16 1 3 4 @,AAA point 0 nongenic,nongenic -4620 upstream,722 downstream {H08J11.2},{F47E1.1} 6416 CB6880_redo X 9078277 1 A G 16 1.00 63 16 1 3 4 @,GGG point 0 nongenic,nongenic -4619 upstream,723 downstream {H08J11.2},{F47E1.1} 6418 CB6880_redo X 9137584 1 A C 6 1.00 63 62 4 5 9 @CCCcC.,., point 0 nongenic,nongenic -278 upstream,-411 upstream {B0563.6c},{B0563.6a} 6419 CB6880_redo X 9171369 1 G T 255 1.00 63 62 0 37 37 @TtTtTttTtttTtTttTTtttTtTttTttTttttTTT point 0 SNP none {haw106181} 6420 CB6880_redo X 9188219 1 C T 255 6.62 63 62 66 189 255 @,,,,,,,,.,t.,.,.,,,,,,,.tt,.,,,.,,,,,,.,,,,,,tT,t..,,,,...t,,TTTTttTttTTtTTtttTTTTTTttTTTTttTTTtTTT point 0 SNP none {haw106187} 6425 CB6880_redo X 9205409 1 T A 20 1.00 63 62 1 3 4 @,aAA point 0 nongenic -5761 upstream {C35B8.4} 6426 CB6880_redo X 9205411 1 C T 65 1.00 63 20 1 4 5 @,tTTt point 0 nongenic -5759 upstream {C35B8.4} 6427 CB6880_redo X 9212879 1 T G 11 1.00 63 62 2 4 6 @..Gggg point 0 nongenic,nongenic -1007 upstream,798 downstream {C35B8.3a.1},{C35B8.4} 7666 CB6880_redo X 9301361 0 X X -1000 -999.99 -1000 -1000 5 0 5 @,...,ttTtt indel 0 nongenic -2296 upstream {B0416.1} 6429 CB6880_redo X 9460186 1 A C 4 2.00 0 18 16 27 43 @Ccc,,ccC,Cc,,.CCC,,CC.c,ccccCcCCc.Cc.Cc,,,, point 0 missense GAT->GAG[Asp->Glu] {ZK899.5} 6430 CB6880_redo X 9462102 1 T C 255 1.19 63 62 1 19 20 @cC,cCCcCCcCcCccCccCc point 0 nongenic,nongenic -1186 upstream,-1234 upstream {ZK899.6},{ZK899.5} 6431 CB6880_redo X 9473599 1 C T 255 1.00 63 62 0 32 32 @TTTtTTTTtTtTTTTTTTTTtTTTtTTTtttt point 0 nongenic,nongenic -1596 upstream,1198 into {ZK899.8b},{ZK899.8a} 6432 CB6880_redo X 9536669 1 T A 255 1.00 63 62 0 29 29 @AAaaaaAAAAaaAaaaaaaaaAaaaaaAa point 0 SNP none {haw106328} 6437 CB6880_redo X 9668899 1 C G 50 1.00 63 48 3 6 9 @gGGgG.a., point 0 nongenic -208 upstream {T14B1.1.1} 6438 CB6880_redo X 9703760 1 T A 198 1.00 63 62 0 19 19 @AAAAAAAAAAAAAAAAAAA point 0 nongenic -3113 upstream {F15G9.1a} 6439 CB6880_redo X 9703853 1 T C 255 1.19 63 62 0 22 22 @CcCCCCCCCCCCCCCCcCCCCc point 0 nongenic -3020 upstream {F15G9.1a} 6440 CB6880_redo X 9704715 1 C T 255 1.00 63 62 0 32 32 @TTttTtTtTtTtttTTTTTTtTtttTttTtTt point 0 nongenic -2158 upstream {F15G9.1a} 6441 CB6880_redo X 9735120 1 A G 25 1.00 63 24 0 4 4 @TGGG point 0 nongenic,nongenic,nongenic,nongenic -17514 upstream,-21472 upstream,17561 into,1892 into {F15G9.4c},{F15G9.2},{F15G9.4a,F15G9.4b,F15G9.4d},{F15G9.5} 6443 CB6880_redo X 9755877 1 C T 255 1.00 63 62 0 53 53 @TTTtttTtTttttTtTTTTTTttTttTtTtttTtttTTTtTTtTtTTTTtttT point 0 nongenic -1327 upstream {T09B9.1} 6444 CB6880_redo X 9774476 1 A G 255 1.00 63 62 0 26 26 @gggggGggGggGggGgggggGGGgGG point 0 SNP none {haw106424} 6445 CB6880_redo X 9861507 1 G T 255 1.00 63 62 0 24 24 @tTTttttTTTTtTTttTTTTtttT point 0 missense,SNP AGT->ATT[Ser->Ile],none {R07B1.3},{haw106438} 6446 CB6880_redo X 9882632 1 A C 255 1.00 63 62 0 16 16 @CCccCCCCCCcCccCc point 0 nongenic,nongenic -1579 upstream,-491 upstream {F21G4.2},{R07B1.12} 6448 CB6880_redo X 9999591 1 A G 255 1.00 63 62 0 23 23 @gggGGGGggggggGggGgggggg point 0 nongenic,nongenic -1281 upstream,-478 upstream {F19C6.2a,F19C6.2b},{F19C6.1} 6449 CB6880_redo X 10130976 1 T G 135 1.00 63 62 1 7 8 @GGGGG.GG point 0 SNP none {haw106550} 6450 CB6880_redo X 10144180 1 C T 255 1.00 63 62 0 27 27 @TTtTttTtttTtTTtTtttttttTttt point 0 nongenic,nongenic -2233 upstream,-2644 upstream {F09B9.1},{F09B9.2a} 6454 CB6880_redo X 10290548 1 G T 4 1.00 63 62 3 3 6 @ttT... point 0 nongenic,nongenic -12030 upstream,-4880 upstream {F41E7.4},{F41E7.3} 6464 CB6880_redo X 10421428 1 G A 255 1.00 63 62 0 28 28 @AAaaAAaAAaaaAAaaaaAAAaaAAAaa point 0 SNP none {haw106854} 6465 CB6880_redo X 10439131 1 C T 255 1.00 63 62 0 44 44 @tTTtTtttTtTttTttTtTttTtttttTtTttTTTtttTTTTTT point 0 SNP none {haw106868} 6466 CB6880_redo X 10473878 1 G A 255 1.00 63 62 0 26 26 @AAaAaaaAaAAAAAAAaaAaaaaAAa point 0 SNP none {haw106890} 6467 CB6880_redo X 10510428 1 C T 255 1.00 63 62 0 25 25 @TtTtTtTtTtttTttTTTtTTttTT point 0 nongenic,nongenic -4925 upstream,4511 into {F14F3.1b},{F14F3.1a} 6468 CB6880_redo X 10579640 1 C T 255 1.00 63 62 0 35 35 @ttTTTTtTtTTTttTTTTtttTttTTtTttTtTtT point 0 nongenic 1345 into {F57C7.2a,F57C7.2b} 6469 CB6880_redo X 10591190 1 G T 255 1.00 63 62 0 38 38 @tTTttttttTttTtTttTttTTtTtTTtttttTTTttT point 0 SNP none {haw106989} 6470 CB6880_redo X 10594749 1 A C 87 1.00 63 62 3 7 10 @CcCccCc,,, point 0 nongenic,nongenic -1484 upstream,-9990 upstream {F57C7.3a},{M79.4} 6471 CB6880_redo X 10660674 1 C T 255 1.00 63 62 0 49 49 @tTTttttttTttTTtTTTTtTTttTTTttttttTTtttttttTTtTtTt point 0 nongenic,nongenic,nongenic,nongenic -1167 upstream,-3660 upstream,1406 into,6126 into {F11A1.2},{F11A1.3c},{F11A1.3b,F11A1.3d},{F11A1.3a} 6472 CB6880_redo X 10799680 1 C T 255 1.00 63 62 0 21 21 @TTTttTTtttTttTttTtTTt point 0 nongenic,nongenic,nongenic,nongenic,nongenic,nongenic -5034 upstream,-5172 upstream,3307 into,3609 into,4007 into,4883 into {T05A10.6},{F31B12.4},{F31B12.1b,F31B12.1d,F31B12.1e},{F31B12.1f},{F31B12.1a},{F31B12.1c} 6473 CB6880_redo X 10845087 1 T C 179 1.00 63 62 0 18 18 @CCCCCCCCCCCCCCCCCC point 0 nongenic -485 upstream {C05A9.2} 6474 CB6880_redo X 10908747 1 C T 255 1.00 63 62 0 29 29 @tTTtTttttTttTTTtTTTtTTTtTtTtT point 0 nongenic,nongenic -2239 upstream,1949 into {F47B10.8a},{F47B10.8b} 6476 CB6880_redo X 11119769 1 C T 255 1.00 63 62 0 35 35 @TtTTTTttTtTTTTTtTtTTTTTTTtTTTtttTTt point 0 premature_stop TGG->TGA[Trp->stop] {R08B4.3} 6477 CB6880_redo X 11158111 1 T A 255 1.00 63 62 0 20 20 @aaaaaAaaaaaaaAaAaaAa point 0 SNP none {pas45631} 7680 CB6880_redo X 11166946 0 X X -1000 -999.99 -1000 -1000 3 0 3 @,..aa indel 0 nongenic,nongenic -11880 upstream,-3062 downstream {F13D2.2},{F13D2.1} 6478 CB6880_redo X 11173603 1 C T 255 1.00 63 62 0 23 23 @TtTTTTTtTTtttttTTTtTTTT point 0 nongenic,nongenic -5222 upstream,1472 into {F13D2.2},{F13D2.1} 6479 CB6880_redo X 11269070 1 G T 90 1.00 63 62 1 5 6 @TTttt. point 0 nongenic,nongenic -119 upstream,-2041 upstream {C03A3.3},{F38B2.1a,F38B2.1c.4} 7685 CB6880_redo X 11492873 2 X X -1000 -999.99 -1000 -1000 6 -5 1 @....., indel -2 SNP none {uCE6-1222} 6486 CB6880_redo X 11550189 1 T C 255 1.00 63 62 0 51 51 @CCCccCCccCCcCccCcCCCcccCCCCCCCCccCCCcCccCcCCccCCCCC point 0 nongenic,nongenic -4530 upstream,79 downstream {C35C5.10a},{C35C5.4} 6487 CB6880_redo X 11600446 1 C A 255 1.00 63 62 0 23 23 @aAaaAAAAaAaAaAAaAAAAAaA point 0 SNP none {haw107592} 6488 CB6880_redo X 11624629 1 T C 255 1.00 63 62 0 33 33 @cccCcccccCCcCccCCccCCcCCcCCCCCccc point 0 missense,SNP GAT->GGT[Asp->Gly],none {Y71H9A.1},{haw107616} 6489 CB6880_redo X 11654822 1 G A 27 1.00 63 62 4 5 9 @..,.aAAAa point 0 nongenic,nongenic,nongenic,nongenic -3542 upstream,-3979 upstream,1329 into,961 into {T04F8.3},{T04F8.4},{T04F8.2.1},{T04F8.2.2} 6490 CB6880_redo X 11692200 1 C T 255 1.00 63 62 0 32 32 @tttttTtTTTTTTTTTTTTTTTTTtTTTtTtT point 0 nongenic,nongenic -1188 upstream,180 into {C44C10.4},{C44C10.5} 6491 CB6880_redo X 11764188 1 C T 255 1.00 63 62 0 53 53 @ttTtTtttTttTtTttTTtTtTtttTTttTtTtTTTtttttttTtttTttTTt point 0 nongenic,nongenic,nongenic 19 downstream,191 downstream,402 downstream {C40H5.4},{C40H5.5b.1},{C40H5.5a,C40H5.5b.2} 6492 CB6880_redo X 11767169 1 C T 255 1.00 63 62 0 23 23 @TTtTTttTTtTTTTttTtttTtT point 0 nongenic,nongenic 2134 into,813 into {C40H5.5a,C40H5.5b.1},{C40H5.5b.2} 6494 CB6880_redo X 11780686 1 G A 255 1.00 63 62 0 27 27 @aAAaaAAaAAAAaaAAaaaAaAAaaaa point 0 nongenic,nongenic -11383 upstream,512 downstream {C40H5.5a,C40H5.5b.1},{Y102F5A.1} 6510 CB6880_redo X 11791594 1 C G 23 1.00 63 62 3 4 7 @,..GGgg point 0 nongenic,nongenic -6831 upstream,-7339 upstream {C34E11.1.1},{Y102F5A.1} 6511 CB6880_redo X 11791596 1 G C 103 1.00 63 22 1 4 5 @.CCcc point 0 nongenic,nongenic -6829 upstream,-7341 upstream {C34E11.1.1},{Y102F5A.1} 6514 CB6880_redo X 11831508 1 C A 255 3.88 63 62 0 22 22 @AAAaAAaAAAAAAaaAaAAAaA point 0 nongenic 4532 into {C34E11.3} 6515 CB6880_redo X 11831549 1 T C 255 2.56 63 62 0 23 23 @CcCcCcCcCCCCcCCcCCCCcCc point 0 nongenic 4491 into {C34E11.3} 6516 CB6880_redo X 11834105 1 C T 255 1.00 63 62 0 36 36 @tttttTTTTttttttTttttTttttTTTTttttttt point 0 nongenic 1935 into {C34E11.3} 6517 CB6880_redo X 11840378 1 T C 255 1.00 63 62 0 20 20 @cCCCCCCcCcCCcccCcCCC point 0 nongenic,nongenic -2978 upstream,-3210 upstream {F54F7.1},{F54F7.2} 6526 CB6880_redo X 11973902 1 C T 255 1.00 63 62 0 32 32 @tTttTTTTttTTtttttttttttttTTTtttt point 0 nongenic 698 into {C49F5.2} 6530 CB6880_redo X 11985680 1 C T 255 1.00 63 62 0 29 29 @ttTtttTTtTtTTTTttTtTTtTtTtttT point 0 nongenic,nongenic -122 upstream,-1857 upstream {C49F5.5},{C49F5.3} 6534 CB6880_redo X 12023120 1 C A 255 2.06 63 62 0 27 27 @aAAAAAaAAaAaAAAaAAaAAaAaaAA point 0 nongenic -6629 upstream {B0198.2} 6535 CB6880_redo X 12165511 1 C T 255 1.00 63 62 0 26 26 @TtTttTTtTTTTTTTTTTttttTtTt point 0 nongenic -5548 upstream {F57G12.2} 6544 CB6880_redo X 12277026 1 C A 156 1.00 63 62 0 7 7 @aaaAaaa point 0 nongenic,nongenic -1425 upstream,-3603 upstream {C04B4.6},{C04B4.1.1} 6545 CB6880_redo X 12277112 1 A G 255 1.00 63 62 0 24 24 @GGGGGGgGGGGgGGGgGGggGGGg point 0 nongenic,nongenic -1511 upstream,-3517 upstream {C04B4.6},{C04B4.1.1} 6546 CB6880_redo X 12277116 1 A T 255 1.06 63 62 0 39 39 @TTTTTTtTTTTtTTTtTTttTTTtTTTTTtTTTtcTTTt point 0 nongenic,nongenic -1515 upstream,-3513 upstream {C04B4.6},{C04B4.1.1} 6547 CB6880_redo X 12277171 1 A T 255 1.94 63 62 0 44 44 @tTTtTTTTtTTTTTTTTTTtTTTttTTTTTTTtTTtTTTTTTTT point 0 nongenic,nongenic -1570 upstream,-3458 upstream {C04B4.6},{C04B4.1.1} 6548 CB6880_redo X 12277206 1 A G 92 1.38 60 50 0 6 6 @GGGGGG point 0 nongenic,nongenic -1605 upstream,-3423 upstream {C04B4.6},{C04B4.1.1} 6553 CB6880_redo X 12277519 1 A G 28 3.50 63 62 170 85 255 @G,G,G,,,g..ggGG,,,,G,,G,GG.gG,GGG..,,,GGg,GGGG,GGGG,GG.gG,GG,,G,,Ggg,GGG,GGG,,G,gg.gG,GGGGGGGGGGGG. point 0 nongenic,nongenic -1918 upstream,-3110 upstream {C04B4.6},{C04B4.1.1} 6554 CB6880_redo X 12277622 1 T G 255 1.25 63 62 0 99 99 @GGGgggGGGGGggGGGGGGGgGGggggGGGGgGGGggggggggGGGgggggggGGGGGGggggggGGGGgggGGGGGGggGGggGGGGggGGGgGgGgG point 0 nongenic,nongenic -2021 upstream,-3007 upstream {C04B4.6},{C04B4.1.1} 6557 CB6880_redo X 12277788 1 C T 11 2.12 35 4 24 32 56 @,T,ttT,,TTTT,,,,T,T,,TTT,TT,T,TTTtTtt..TT,TtT,T,T,T,,T,. point 0 nongenic,nongenic -2187 upstream,-2841 upstream {C04B4.6},{C04B4.1.1} 6558 CB6880_redo X 12277811 1 A G 3 2.00 0 2 8 40 48 @GGG,GGGGGGG.,,G,gGGGgGGGGGGGGGGGGGGG,Ggg,G,GGGGg point 0 nongenic,nongenic -2210 upstream,-2818 upstream {C04B4.6},{C04B4.1.1} 6560 CB6880_redo X 12278048 1 C A 140 9.62 34 62 15 33 48 @AAa,AaAAAAAaAAaaAaaAaAAaAAa.AAA,,,A,a,A...A...,, point 0 nongenic,nongenic -2447 upstream,-2581 upstream {C04B4.6},{C04B4.1.1} 6568 CB6880_redo X 12278330 1 A C 3 5.19 0 4 0 28 28 @cccCCCCcCCCCcCCcCCCCtTtttccT point 0 nongenic,nongenic -2299 upstream,-2729 upstream {C04B4.1.1},{C04B4.6} 6571 CB6880_redo X 12342472 1 A T 255 1.00 63 62 0 38 38 @tTtctTtTTtttttttttttTTttTttTtttTtttttT point 0 nongenic,nongenic -1118 upstream,405 downstream {F42F12.2},{F42F12.1} 6572 CB6880_redo X 12342473 1 T A 255 1.00 63 62 0 38 38 @AaaaAaAAaaaaaaaaaaaAAaaAaaAaaaAaaaaaAA point 0 nongenic,nongenic -1119 upstream,404 downstream {F42F12.2},{F42F12.1} 6586 CB6880_redo X 12578208 1 T G 3 9.00 29 4 3 4 7 @GGGG.., point 0 nongenic -1787 upstream {T24D5.3} 6587 CB6880_redo X 12613382 1 C T 156 2.00 63 62 9 21 30 @T.TTTtt.T.TTTTt..T.TT.T.t.TTTt point 0 nongenic -301 upstream {R09A8.1a} 6592 CB6880_redo X 12758582 1 C T 255 1.00 63 62 0 38 38 @TTTTtTtttTTTTTtttTtTTTttttTTTtTTttTttT point 0 nongenic,nongenic,nongenic -3423 upstream,-9080 upstream,49658 into {F22E10.5a,F22E10.5b},{F22E10.3},{F16H9.2} 6593 CB6880_redo X 12786146 1 G C 255 1.00 63 62 0 43 43 @CCCcccCcCcCCcCCccCcCCcccccCCCcCcCccCcccCccC point 0 missense,SNP TGG->TGC[Trp->Cys],none {T22H6.2a,T22H6.2b},{haw107989} 6594 CB6880_redo X 12795967 1 C A 255 1.00 63 62 0 27 27 @AaAAaaAAAAaAaAAaAaAAAAAAAAN point 0 SNP,three_prime_UTR none,none {haw107990},{T22H6.6a,T22H6.6b} 6595 CB6880_redo X 12796319 1 C T 255 1.00 63 62 0 52 52 @tTTttTTttTTtTttTTtttttttttTTtTtttTTtttttTTTtTTTttttt point 0 missense AGC->AAC[Ser->Asn] {T22H6.6a,T22H6.6b,T22H6.6c} 6596 CB6880_redo X 12830072 1 C T 255 1.00 63 62 0 49 49 @TTtttTtTTTttttTTtTtTtTTtttTTTttTtttTtTttTTTTTtTTT point 0 nongenic,nongenic -13162 upstream,-16203 upstream {C52G5.2},{T22H6.6a} 6600 CB6880_redo X 13034301 1 T A 255 1.00 63 62 0 33 33 @AAAAAaAaAaaaAaAaaAAaAaAaaAAaAaAaa point 0 SNP none {haw108272} 6604 CB6880_redo X 13114815 1 C T 255 1.00 63 62 0 27 27 @tTtTttttTtttttTttTttTTtTTtt point 0 missense GCA->GTA[Ala->Val] {F17H10.2a,F17H10.2b} 6605 CB6880_redo X 13235296 1 T A 14 1.38 63 2 2 3 5 @Aa,,a point 0 nongenic,nongenic -2047 upstream,-416 upstream {K08H2.3},{K08H2.2} 6606 CB6880_redo X 13235299 1 T A 3 1.38 63 12 2 3 5 @Aa,,a point 0 nongenic,nongenic -2044 upstream,-419 upstream {K08H2.3},{K08H2.2} 6607 CB6880_redo X 13235302 1 T A 12 1.31 63 2 2 4 6 @Aa,,aa point 0 nongenic,nongenic -2041 upstream,-422 upstream {K08H2.3},{K08H2.2} 7698 CB6880_redo X 13261607 0 X X -1000 -999.99 -1000 -1000 5 -2 3 @,,,,,CC indel 0 nongenic,nongenic -815 upstream,786 downstream {K09A11.1},{K08H2.10} 6608 CB6880_redo X 13266326 1 C T 255 1.00 63 62 0 29 29 @ttTttTTTTtTtTtttttTTtTTttTtTt point 0 missense AGA->AAA[Arg->Lys] {K09A11.2} 6609 CB6880_redo X 13327434 1 C T 255 1.00 63 62 0 50 50 @TTttTtttttTtTTttttTTTtTtttTtTTtttTTTTttttTTttTTtTt point 0 three_prime_UTR none {F46G10.2} 6610 CB6880_redo X 13354617 1 G T 93 1.00 63 58 3 6 9 @,..TTtttt point 0 nongenic -3890 upstream {F46G10.6} 6611 CB6880_redo X 13384402 1 T A 139 1.00 63 62 0 7 7 @AAAAAAA point 0 SNP none {haw108496} 6613 CB6880_redo X 13437208 1 C T 169 2.94 63 62 0 14 14 @tttttttttttttT point 0 nongenic,nongenic -5688 upstream,832 into {C29F7.5},{C29F7.6} 6614 CB6880_redo X 13480349 1 T A 255 1.00 63 62 0 40 40 @AaaAAaAaAaAAaAaaAaAAAaAAaaaaaaaAAaAAaaAA point 0 missense,SNP AAC->ATC[Asn->Ile],none {F15A2.4},{haw108526,uCE6-1345} 7702 CB6880_redo X 13527874 0 X X -1000 -999.99 -1000 -1000 4 1 5 @,,.,aaaaa indel 0 nongenic,nongenic,nongenic -1133 upstream,-537 upstream,-586 upstream {F18H3.4.1},{F18H3.3a.1},{F18H3.3a.3} 6619 CB6880_redo X 13565709 1 C T 255 1.00 63 62 0 44 44 @ttttttTTttttTTtttTtTTtTtTTtttTTttTTTTtTTttTt point 0 missense GAG->AAG[Glu->Lys] {R01E6.2} 6620 CB6880_redo X 13582096 1 C T 255 1.00 63 62 0 43 43 @TttTTtTttttTTTtttTtTTtTTtTTTttTttTTTTTtTTTt point 0 nongenic,nongenic -26 upstream,446 downstream {F54B11.10},{F54B11.11} 6622 CB6880_redo X 13649405 1 A C 31 8.00 63 2 1 3 4 @.Ccc point 0 nongenic -1763 upstream {C40C9.4} 6629 CB6880_redo X 13708213 1 T G 4 1.00 63 16 2 7 9 @,G,gggGGG point 0 nongenic,nongenic 429 downstream,654 downstream {K02D3.2},{K02D3.1} 7703 CB6880_redo X 13713053 0 X X -1000 -999.99 -1000 -1000 5 -3 2 @,.,.,aa indel 0 nongenic,nongenic -1026 upstream,-1166 upstream {K11E4.1},{K02D3.2} 6631 CB6880_redo X 13737752 1 G T 255 1.00 63 62 0 23 23 @TttTttTTtTTtTTtttttTtTT point 0 SNP none {haw108674,uCE6-1361} 6632 CB6880_redo X 13738979 1 G T 41 1.00 63 52 0 4 4 @CtTt point 0 nongenic -8258 upstream {K11E4.5a} 6639 CB6880_redo X 13764139 1 T G 14 1.25 63 2 0 4 4 @Gggg point 0 nongenic,nongenic 233 downstream,234 downstream {F55F3.2b},{F55F3.2a} 6647 CB6880_redo X 13764381 1 T G 7 1.00 63 0 1 4 5 @GG,GG point 0 nongenic,nongenic,nongenic 475 downstream,476 downstream,896 downstream {F55F3.2b},{F55F3.2a},{F55F3.3.1} 6648 CB6880_redo X 13794629 1 C G 3 4.00 63 2 1 4 5 @ggg,g point 0 nongenic -1108 upstream {ZK1086.2} 6651 CB6880_redo X 13878167 1 C T 255 1.00 63 62 0 22 22 @ttTttTtTtttttTTtttTTTt point 0 nongenic,nongenic -4886 upstream,1737 into {T21H8.1b.1},{T21H8.5} 6652 CB6880_redo X 13917112 1 G C 255 1.00 63 62 0 41 41 @cccCcccCcCCCccCcCCCccCCcCcCccCccCcccCCCCc point 0 nongenic -15 upstream {Y26E6A.1} 6656 CB6880_redo X 14118935 1 A G 85 1.00 63 62 0 7 7 @GGGGGGG point 0 nongenic,nongenic -8867 upstream,1926 into {F28H6.4},{F28H6.6} 6662 CB6880_redo X 14160627 1 A C 3 1.00 63 22 1 4 5 @.cccc point 0 nongenic,nongenic -3691 upstream,980 into {R03E1.4},{R03E1.3} 6663 CB6880_redo X 14229404 1 A T 213 7.94 63 62 0 17 17 @ttTttttttttttTttt point 0 nongenic,nongenic 185 downstream,921 downstream {K04C1.6},{K06G5.2} 7707 CB6880_redo X 14269367 1 X X -1000 -999.99 -1000 -1000 4 -1 3 @GG,... indel -1 nongenic -2512 upstream {E02H4.1} 6670 CB6880_redo X 14375235 1 T C 209 1.00 63 62 0 10 10 @cCccCcCccC point 0 SNP none {uCE6-1407} 6671 CB6880_redo X 14379009 1 T C 75 6.00 63 62 0 5 5 @cCcCc point 0 nongenic,nongenic -1757 upstream,-4162 upstream {Y60A9A.1},{Y60A9.3} 6672 CB6880_redo X 14381923 1 G A 255 1.00 63 62 0 27 27 @aaAAaaAaaaaAAaaAaaaaAaAAaaA point 0 SNP none {haw109439} 6673 CB6880_redo X 14384687 1 A C 12 5.69 0 2 0 4 4 @cccc point 0 nongenic 903 downstream {Y60A9.3} 6675 CB6880_redo X 14461134 1 A T 133 1.00 63 40 3 8 11 @ttTtTttt.., point 0 nongenic,nongenic,nongenic -1643 upstream,-5707 upstream,865 into {M163.6},{Y66C5A.1},{Y66C5A.2} 6677 CB6880_redo X 14510694 1 G A 197 3.25 63 62 0 15 15 @aaaaaaaaaaaaaaa point 0 nongenic,nongenic -6932 upstream,532 downstream {M163.1},{D1025.3} 6678 CB6880_redo X 14510701 1 T G 192 3.38 63 62 0 15 15 @ggggggggggggggg point 0 nongenic,nongenic -6939 upstream,525 downstream {M163.1},{D1025.3} 6679 CB6880_redo X 14573708 1 A G 9 1.00 63 10 2 2 4 @gG,, point 0 nongenic,nongenic,nongenic -4167 upstream,1069 into,4913 into {C44H4.2},{C44H4.1},{H01A20.2} 6680 CB6880_redo X 14573709 1 G A 10 1.00 63 8 2 2 4 @aA,, point 0 nongenic,nongenic,nongenic -4166 upstream,1070 into,4914 into {C44H4.2},{C44H4.1},{H01A20.2} 6681 CB6880_redo X 14577774 1 T A 252 1.00 63 62 0 24 24 @aaAaaaaaaAaaaaaaaaaaaaaa point 0 nongenic,nongenic -101 upstream,6732 into {C44H4.2},{H01A20.2} 6682 CB6880_redo X 14595719 1 A T 46 1.00 63 62 2 4 6 @tttt.. point 0 three_prime_UTR none {C44H4.8} 6683 CB6880_redo X 14613805 1 C A 255 1.00 63 62 0 34 34 @AAaaaaaAaAaaaAAaaAaaaaaaAaaAaAaaaa point 0 ncRNA,silent none,CGA->AGA[Arg->Arg] {F54E4.1b},{F54E4.1a} 6684 CB6880_redo X 14614979 1 T C 37 1.00 63 62 2 3 5 @CCc.. point 0 missense,ncRNA GTT->GCT[Val->Ala],none {F54E4.1a},{F54E4.1b} 6685 CB6880_redo X 14617422 1 G A 255 1.00 63 62 0 51 51 @aaAaAAAAaaaaAaAAaaaaAaaaaaaAAaAaaAaAaaaaaaAAAAAaaaa point 0 missense,ncRNA GCA->ACA[Ala->Thr],none {F54E4.1a},{F54E4.1b} 6687 CB6880_redo X 14637664 1 A C 255 1.00 63 62 0 17 17 @CCCCCcCcccCCCCCCC point 0 nongenic -1335 upstream {F54E4.3} 6688 CB6880_redo X 14766617 1 G T 30 1.00 63 0 0 4 4 @TtTT point 0 premature_stop TAC->TAA[Tyr->stop] {Y16B4A.2} 6691 CB6880_redo X 14766654 1 C T 120 1.00 63 30 0 4 4 @tTTt point 0 missense GGA->GAA[Gly->Glu] {Y16B4A.2} 6692 CB6880_redo X 14766656 1 G C 131 1.00 63 62 0 6 6 @cCCcCC point 0 silent CCC->CCG[Pro->Pro] {Y16B4A.2} 6693 CB6880_redo X 14767044 1 C G 255 1.00 63 62 0 51 51 @GggggGGgGgggggggGgggGggGGGGgGGGgGggGGggGGGggGgGGGGg point 0 missense GAA->CAA[Glu->Gln] {Y16B4A.2} 6694 CB6880_redo X 14771515 1 C A 8 1.00 63 16 4 5 9 @aaaaa,... point 0 nongenic,nongenic,nongenic -10630 upstream,-1943 upstream,258 into {C05G5.5},{Y16B4A.1},{Y16B4A.2} 6698 CB6880_redo X 14844858 1 C T 11 1.00 63 62 6 6 12 @,T,TTTT,T,,, point 0 nongenic -999 upstream {C27C12.2} 6699 CB6880_redo X 14844862 1 C T 5 1.00 63 62 4 7 11 @TTTTT,T,,T, point 0 nongenic -995 upstream {C27C12.2} 6705 CB6880_redo X 14913406 1 G T 255 1.00 63 62 0 27 27 @tTTttttTTTTtTtTTttTtTTtTtTT point 0 SNP none {haw110147} 6706 CB6880_redo X 14921904 1 G A 255 1.00 63 62 0 18 18 @AaAAaAaaaAaaAAaaaa point 0 SNP none {haw110159} 6707 CB6880_redo X 14921912 1 A G 255 1.00 63 62 0 16 16 @GgGgggGggGGggggG point 0 SNP none {haw110160} 6709 CB6880_redo X 14936470 1 A G 255 1.00 63 62 0 29 29 @gggGGgGGGGgGgGgGggggGGGGgGGgG point 0 nongenic -7615 upstream {F14F4.1} 6711 CB6880_redo X 14945493 1 T C 239 1.00 63 62 0 13 13 @CCCCcCCcccccC point 0 SNP none {haw110192} 6712 CB6880_redo X 14947974 1 G T 19 1.00 63 26 4 4 8 @,,C,Tc,c point 0 nongenic -1736 upstream {F14F4.3a,F14F4.3b} 7715 CB6880_redo X 14961549 0 X X -1000 -999.99 -1000 -1000 11 -10 1 @.,CC..,,,,... indel 4 nongenic,nongenic -1293 upstream,-96 upstream {F45B8.2},{F45B8.3} 6714 CB6880_redo X 14962448 1 A T 195 1.00 63 62 1 13 14 @TTT,TttttttTTT point 0 nongenic,nongenic -393 upstream,-995 upstream {F45B8.2},{F45B8.3} 6715 CB6880_redo X 14966226 1 G A 255 1.00 63 62 0 36 36 @AAAAaaAaaaAAAaAaaAaAaAAAAAAAaAaaAAaA point 0 nongenic 372 downstream {F45B8.1} 6716 CB6880_redo X 14991989 1 G A 255 1.00 63 62 0 31 31 @AaaAaaAAAaaAaAAaaaaAAaAAaAaAaaA point 0 nongenic -688 upstream {F20D1.7} 6719 CB6880_redo X 15036339 1 G A 255 1.00 63 62 0 37 37 @AaAaAaAAAAaAaaaAaAAaAAAAAAaAaAaaAAaaA point 0 nongenic,nongenic -1877 upstream,277 downstream {C18B12.3},{C18B12.4} 6722 CB6880_redo X 15131654 1 A G 55 1.00 63 38 5 8 13 @GGgGGGGg..,,, point 0 nongenic,nongenic -15115 upstream,10501 into {R07D5.2},{R07D5.1} 7717 CB6880_redo X 15192241 0 X X -1000 -999.99 -1000 -1000 2 1 3 @,,aaa indel 0 ncRNA none {T10B10.4b} 6728 CB6880_redo X 15226797 1 G T 255 1.00 63 62 0 39 39 @ttttTTtttttttTTTTtttttttTTTTTtttTTTttTt point 0 missense,SNP CCT->CAT[Pro->His],none {H03A11.2},{haw110591} 6738 CB6880_redo X 15362888 1 G A 255 1.00 63 62 0 37 37 @aAAAaaaaAaaaaAAAAaaaaaaAAAAaAaaaaaaAa point 0 silent AAG->AAA[Lys->Lys] {C33A11.1.1,C33A11.1.2,C33A11.1.3} 6740 CB6880_redo X 15447753 1 C T 201 1.31 63 62 0 21 21 @TTTTTTTTTTTTTTTTTTTTT point 0 nongenic,nongenic -14011 upstream,1103 into {R03A10.6.1},{R03A10.5} 6741 CB6880_redo X 15454028 1 G A 152 1.00 63 62 12 26 38 @,AaAAAaAA,aa.aa,A,AAAaaAA,a.,A,,,,Aaaa point 0 nongenic -7736 upstream {R03A10.6.1} 6742 CB6880_redo X 15461258 1 A T 42 1.00 63 42 0 4 4 @GgTT point 0 nongenic -506 upstream {R03A10.6.1} 6743 CB6880_redo X 15472090 1 A T 110 9.06 63 62 0 12 12 @ttTTtTTTtttT point 0 nongenic,nongenic -6848 upstream,1374 into {C46E1.2},{C46E1.3} 6747 CB6880_redo X 15520197 1 A G 147 1.00 63 62 0 7 7 @gGGGgGG point 0 ncRNA none {H30A04.1c} 6748 CB6880_redo X 15569865 1 G A 7 1.00 63 62 26 28 54 @.A...,A.AAAA.a.,.,AA,,aa.AA,aA.a.aAA,,aa,,AaaAaaA,,.,. point 0 silent AAG->AAA[Lys->Lys] {C02C6.1a,C02C6.1b} 6749 CB6880_redo X 15621075 1 A G 3 1.00 63 20 2 7 9 @GCGGGG.g, point 0 nongenic,nongenic,nongenic,nongenic -1153 upstream,-4631 upstream,654 into,665 into {K09E9.1.2},{K09E9.2.1},{K09E9.1.3},{K09E9.1.1} 6751 CB6880_redo X 15722216 1 A G 255 1.00 63 62 0 35 35 @gGGgGGgggggGgGGGGggGGggGgGGGggggggG point 0 nongenic,nongenic -3834 upstream,1025 into {ZK662.4.1,ZK662.4.2},{ZK662.5} 6752 CB6880_redo X 15747972 1 T A 93 6.50 63 62 14 16 30 @.AA.AA..AAa.A.AAaAAaa.......A. point 0 ncRNA none {ZK678.t2} 6777 CB6880_redo X 15836084 1 A G 167 1.19 63 62 0 14 14 @GGGGGGGGGGGGGG point 0 nongenic,nongenic -5408 upstream,2112 into {F59F4.2},{F59F4.1} 6778 CB6880_redo X 15836927 1 T C 255 1.00 63 62 0 31 31 @NCccCCCCcCcCCCccCccCCCccCcccccc point 0 missense ACA->GCA[Thr->Ala] {F59F4.1} 6779 CB6880_redo X 15904379 1 C A 255 1.00 63 62 0 41 41 @tAaaaaaaAaaaaaAaAAaAaAAAAAAAaAaaaaAAAaaAa point 0 nongenic,nongenic -16871 upstream,-6178 upstream {F53H4.3},{F31B9.1} 6780 CB6880_redo X 15904380 1 A C 255 1.00 63 62 0 40 40 @CccccccCcccccCcCCcCcCCCCCCCcCccccCCCccCc point 0 SNP none {haw111415} 6782 CB6880_redo X 15945619 1 A T 255 1.00 63 62 0 30 30 @TTttTTtttTtttTtTTTTtTTTTTTTTTt point 0 SNP none {haw111469} 6783 CB6880_redo X 15945743 1 G T 208 1.00 63 62 0 9 9 @tTTTTTttt point 0 nongenic,nongenic,nongenic -6498 upstream,-6550 upstream,1815 into {E03G2.2},{E03G2.4},{E03G2.3} 6784 CB6880_redo X 15945744 1 G T 209 1.00 63 62 0 9 9 @tTTTTTttt point 0 nongenic,nongenic,nongenic -6499 upstream,-6549 upstream,1816 into {E03G2.2},{E03G2.4},{E03G2.3} 6785 CB6880_redo X 15945755 1 A T 205 1.00 63 62 0 11 11 @TTTtttTttTt point 0 nongenic,nongenic,nongenic -6510 upstream,-6538 upstream,1827 into {E03G2.2},{E03G2.4},{E03G2.3} 6787 CB6880_redo X 15965539 1 G A 55 1.00 63 62 11 15 26 @,aaaAA.a,aA,..Aa.,.aAAaa.. point 0 nongenic 491 downstream {C09G1.1} 6788 CB6880_redo X 16010916 1 G T 255 1.00 63 62 0 21 21 @tTtttTTTTTtttTttTTttT point 0 SNP none {haw111536} 6789 CB6880_redo X 16010919 1 C A 255 1.00 63 62 0 26 26 @aAaaaAAAAAaaaAaaAAaaAaAAaa point 0 nongenic -14063 upstream {C09G1.4} 6790 CB6880_redo X 16029144 1 A C 134 1.00 63 62 0 6 6 @cccccc point 0 nongenic -1579 upstream {B0395.2} 6791 CB6880_redo X 16029151 1 T C 114 0.00 63 62 0 5 5 @ccccc point 0 nongenic -1572 upstream {B0395.2} 6793 CB6880_redo X 16048220 1 C T 50 1.06 63 62 9 13 22 @T..T.,,TTTt.T,.TttTTT, point 0 nongenic,nongenic -1570 upstream,-8787 upstream {T27A8.1},{B0395.3.1} 6795 CB6880_redo X 16083037 1 C A 24 1.00 63 16 2 2 4 @aa.. point 0 nongenic,nongenic,nongenic,nongenic -10947 upstream,-7450 upstream,2096 into,667 into {C30F2.5},{C30F2.4},{C30F2.2},{C30F2.3} 6797 CB6880_redo X 16102626 1 T G 255 1.00 63 62 0 38 38 @GgggGGgGGGGggGGggGgGGgGgggGGgGgGGGGggg point 0 SNP none {CE6-235,haw111583} 6798 CB6880_redo X 16120770 1 G A 42 1.00 63 24 1 3 4 @aaA, point 0 nongenic 2900 into {ZK1073.2} 6822 CB6880_redo X 16253910 1 A C 3 1.00 63 0 2 9 11 @cc.cc.ccccc point 0 nongenic 848 downstream {W10G6.2a.1} 6823 CB6880_redo X 16255156 1 G T 255 1.00 63 62 0 18 18 @tttTTtTTTTtTTTTTtT point 0 nongenic,nongenic 226 into,398 into {W10G6.2a.2,W10G6.2b},{W10G6.2a.1} 6824 CB6880_redo X 16255668 1 T G 204 9.06 63 62 0 17 17 @gGGGGGGGGGGGGGGGG point 0 nongenic,nongenic 738 into,910 into {W10G6.2a.2,W10G6.2b},{W10G6.2a.1} 6825 CB6880_redo X 16255669 1 T C 197 9.56 63 62 0 16 16 @CCCCCCCCCCCCCCCC point 0 nongenic,nongenic 739 into,911 into {W10G6.2a.2,W10G6.2b},{W10G6.2a.1} 6826 CB6880_redo X 16255728 1 T C 123 8.00 63 62 0 8 8 @CCCCCCCC point 0 nongenic,nongenic 798 into,970 into {W10G6.2a.2,W10G6.2b},{W10G6.2a.1} 6827 CB6880_redo X 16255860 1 T A 255 1.00 63 62 0 19 19 @aAaaAaaAAaaaAAaaAAa point 0 SNP none {haw111737} 6835 CB6880_redo X 16457888 1 A G 33 1.00 63 62 8 9 17 @,G.g,,gGG,G.g,G.G point 0 nongenic,nongenic -13400 upstream,580 into {F38E9.1},{F38E9.2} 6836 CB6880_redo X 16460133 1 C A 255 1.00 63 62 0 28 28 @AaaAaaaAAAaaAaaaAaAAaaAAAaAa point 0 SNP none {haw111863} 6837 CB6880_redo X 16460180 1 C A 255 1.00 63 62 0 28 28 @aaAAaAAAAAaaaAAAAaaAAAaaaaaa point 0 SNP none {haw111864} 6838 CB6880_redo X 16461404 1 G C 18 2.00 63 58 1 3 4 @,cCC point 0 ncRNA none {F38E9.t2} 6839 CB6880_redo X 16464478 1 C T 23 1.00 63 62 16 19 35 @,TTTT,TT.Ttt.,TTttt....T,.,TTt.,..t point 0 silent TAC->TAT[Tyr->Tyr] {F38E9.2} 6851 CB6880_redo X 16523636 1 G A 83 1.19 63 62 9 10 19 @.,.AA..A,Aa,aa.A.Aa point 0 nongenic -13115 upstream {T27B1.2.1} 6852 CB6880_redo X 16587958 1 G A 44 1.00 63 62 14 19 33 @Aa,a.,A...A.A.AA,,aA.Aaaaaa,.aAA, point 0 nongenic,nongenic -7194 upstream,339 downstream {F59C12.1},{F59C12.2a,F59C12.2b} 6853 CB6880_redo X 16608719 1 G A 51 1.00 63 62 2 4 6 @,.AaAA point 0 nongenic,nongenic,nongenic -4646 upstream,-6084 upstream,723 into {C06G1.4.1},{F59C12.4},{F59C12.3} 6854 CB6880_redo X 16661001 1 G T 151 1.00 63 62 0 8 8 @tttttttt point 0 silent CGA->AGA[Arg->Arg] {F43B10.1} 6855 CB6880_redo X 16687504 1 A G 166 1.88 63 62 1 12 13 @g,ggggGGggggG point 0 nongenic,nongenic -1879 upstream,825 into {F22H10.4},{F22H10.5} 6856 CB6880_redo X 16787261 1 A T 255 1.00 63 62 0 37 37 @TtTTTTtTtTTTTtTTttTTtTTTttTTtTtTTTTTt point 0 SNP none {haw111929} 6857 CB6880_redo X 16817032 1 T C 255 1.00 63 62 0 25 25 @CccCccCCcCccCCcCccCCCCgCC point 0 missense AAA->GAA[Lys->Glu] {F41G4.3a,F41G4.3b} 6862 CB6880_redo X 16981399 1 A C 51 1.00 63 26 0 4 4 @CCCC point 0 nongenic,nongenic -20248 upstream,-5351 upstream {K02H8.1,K02H8.1b,K02H8.1c},{F52G3.5} 6863 CB6880_redo X 16981415 1 T C 178 1.00 63 62 0 11 11 @CCCCCCCCCCC point 0 SNP none {haw111956} 6865 CB6880_redo X 17025320 1 A T 88 1.00 63 62 0 5 5 @TTTTT point 0 nongenic,nongenic,nongenic -4597 upstream,1098 into,3583 into {F35B3.4},{F35B3.5b},{F35B3.5a} 6866 CB6880_redo X 17047302 1 C T 255 1.00 63 62 0 20 20 @ttTttTtTtTTTTTTTtTtt point 0 missense GAG->AAG[Glu->Lys] {C30G4.3.1,C30G4.3.2} 6867 CB6880_redo X 17047309 1 T C 238 1.00 63 62 0 16 16 @CcCCCCCCCcCccCCc point 0 silent GAA->GAG[Glu->Glu] {C30G4.3.1,C30G4.3.2} 6868 CB6880_redo X 17047323 1 G T 255 1.00 63 62 1 20 21 @TTTTTTtTttTTtT.TTtttT point 0 missense CAG->AAG[Gln->Lys] {C30G4.3.1,C30G4.3.2} 6874 CB6880_redo X 17086380 1 C A 84 1.00 63 62 0 4 4 @AaAa point 0 SNP none {haw111973} 6876 CB6880_redo X 17097607 1 T A 98 1.00 63 62 2 6 8 @Aaa,,aAa point 0 SNP none {haw111984,pas37283} 6877 CB6880_redo X 17105478 1 G C 255 1.00 63 62 0 27 27 @CCCCCccCCcCcCCCccccccCccCcc point 0 nongenic -690 upstream {C08A9.8} 6878 CB6880_redo X 17168879 1 A G 158 1.19 63 62 0 6 6 @gGGGGG point 0 nongenic -11005 upstream {T23C6.5} 7727 CB6880_redo X 17218805 0 X X -1000 -999.99 -1000 -1000 6 -2 4 @,,cc..,. indel 1 nongenic,nongenic -1781 upstream,-3586 upstream {T25G12.5.1},{T25G12.4} 6891 CB6880_redo X 17378482 1 A G 25 1.00 63 6 0 4 4 @ggGg point 0 nongenic,nongenic -3689 upstream,64 downstream {F10D7.3},{F10D7.4} 7731 CB6880_redo X 17441958 0 X X -1000 -999.99 -1000 -1000 5 -2 3 @,..,,cc indel 1 nongenic -10349 upstream {C36E6.2} 7732 CB6880_redo X 17443243 0 X X -1000 -999.99 -1000 -1000 4 -2 2 @,,.,cccct indel 0 nongenic -9064 upstream {C36E6.2} 6916 CB6880_redo X 17444362 1 A C 24 5.38 0 6 0 28 28 @cccccCCCCCccccCCcCCcCCccCCcc point 0 nongenic -7944 upstream {C36E6.2} 6926 CB6880_redo X 17461966 1 T A 40 1.00 63 62 7 11 18 @,,A,AAAA,.,A,AAAAa point 0 nongenic,nongenic 1126 into,1889 into {ZK54.1b},{ZK54.1a} 6932 CB6880_redo X 17591175 1 G A 26 1.00 63 0 1 3 4 @,caA point 0 nongenic,nongenic -12149 upstream,-9209 upstream {F39B3.3},{C16H3.2} 6933 CB6880_redo X 17591176 1 A C 29 1.00 63 0 1 3 4 @,ccC point 0 nongenic,nongenic -12150 upstream,-9208 upstream {F39B3.3},{C16H3.2} 6934 CB6880_redo X 17621416 1 A T 255 1.00 63 62 0 18 18 @TtTTttTtttTtTTTTtt point 0 SNP none {haw112084} 6937 CB6880_redo X 17715334 1 G A 255 1.00 63 62 0 26 26 @AAAAaaAaAAaaaAAAaaAAaaaaAa point 0 nongenic,nongenic,nongenic 455 into,457 into,589 downstream {cTel55X.1a.2,cTel55X.1b},{cTel55X.1a.1},{6R55.2}