Finished reading input.
++ echo CB6978/./s_5_1_sequence_read1.fastq,CB6980/./s_6_1_sequence_read1.fastq,CB6945/./WTCHG_15227_read1.fastq,CB6633.3/./s_4_1_sequence_read1.fastq
++ tr , ' '
+ fastq_file_set1='CB6978/./s_5_1_sequence_read1.fastq CB6980/./s_6_1_sequence_read1.fastq CB6945/./WTCHG_15227_read1.fastq CB6633.3/./s_4_1_sequence_read1.fastq'
++ cd /data/maqgene/reads
++ cat CB6978/./s_5_1_sequence_read1.fastq CB6980/./s_6_1_sequence_read1.fastq CB6945/./WTCHG_15227_read1.fastq CB6633.3/./s_4_1_sequence_read1.fastq
++ cut -f 1 -d ' '
++ wc -l
+ TOTAL_LINES=796206596
++ echo '(796206596 / 5000000) + (796206596 % 5000000 != 0)'
++ bc
+ num_chunks=160
+ set +x
make -j 14 -l 14  -C /data/maqgene/work --warn-undefined-variables   -I /data/maqgene -f /data/maqgene/makefile BFA_FILE=elegans.bfa MAQGENE_GENOME_DIR=/data/maqgene/genomes   reads_cksum=3031186332 map_cksum=1592611249 pileup_cksum=2192903831 cns_cksum=1966694035   umdd=50000 dmdd=1000 umid=1000 dmid=1000 max_gene_radius=50000   full_results_dir=/data/maqgene/out/example_user/CB6978 outfile_basename=CB6978   map_parameters=" -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0" assemble_parameters=" -N 2 -q 0 -r 0.0 -m 7 -Q 100 -p "   pileup_parameters=" -Q 100 -p  -m 7 -q 0" CHUNK_SIZE=5000000 NUM_CHUNKS=160
Will process 796206596 lines of input in 160 chunks
make: Entering directory `/data/maqgene/work'
# Mon Nov 28 20:20:06 GMT 2011: Removing frontend files in case this is a duplicate run ...
rm -f /data/maqgene/out/example_user/CB6978/CB6978_{grouped.txt,flat.txt}
rm -f /data/maqgene/out/example_user/CB6978/CB6978_uncovered.txt /data/maqgene/out/example_user/CB6978/CB6978_coverage.txt /data/maqgene/out/example_user/CB6978/CB6978_pileup.txt /data/maqgene/out/example_user/CB6978/CB6978_log.txt /data/maqgene/out/example_user/CB6978/CB6978_check.txt /data/maqgene/out/example_user/CB6978/CB6978_unmapped.txt
make: Leaving directory `/data/maqgene/work'
make: Entering directory `/data/maqgene/work'
/data/maqgene/makefile:76: warning: undefined variable `date'
/data/maqgene/makefile:78: warning: undefined variable `date'
# : Regrouping fastq reads into chunks of size 5000000.
split -l 5000000 -a 5 -d <(cat /data/maqgene/reads/CB6978/./s_5_1_sequence_read1.fastq /data/maqgene/reads/CB6980/./s_6_1_sequence_read1.fastq /data/maqgene/reads/CB6945/./WTCHG_15227_read1.fastq /data/maqgene/reads/CB6633.3/./s_4_1_sequence_read1.fastq) 1592611249.1.fastq.
for stem in 00000 00001 00002 00003 00004 00005 00006 00007 00008 00009 00010 00011 00012 00013 00014 00015 00016 00017 00018 00019 00020 00021 00022 00023 00024 00025 00026 00027 00028 00029 00030 00031 00032 00033 00034 00035 00036 00037 00038 00039 00040 00041 00042 00043 00044 00045 00046 00047 00048 00049 00050 00051 00052 00053 00054 00055 00056 00057 00058 00059 00060 00061 00062 00063 00064 00065 00066 00067 00068 00069 00070 00071 00072 00073 00074 00075 00076 00077 00078 00079 00080 00081 00082 00083 00084 00085 00086 00087 00088 00089 00090 00091 00092 00093 00094 00095 00096 00097 00098 00099 00100 00101 00102 00103 00104 00105 00106 00107 00108 00109 00110 00111 00112 00113 00114 00115 00116 00117 00118 00119 00120 00121 00122 00123 00124 00125 00126 00127 00128 00129 00130 00131 00132 00133 00134 00135 00136 00137 00138 00139 00140 00141 00142 00143 00144 00145 00146 00147 00148 00149 00150 00151 00152 00153 00154 00155 00156 00157 00158 00159; do mv 1592611249.1.fastq.$stem 1592611249.$stem.1.fastq; done
touch 3031186332_split1
# : Regrouping fastq reads into chunks of size 5000000.
split -l 5000000 -a 5 -d <(cat /data/maqgene/reads/CB6978/./s_5_1_sequence_read2.fastq /data/maqgene/reads/CB6980/./s_6_2_sequence_read2.fastq /data/maqgene/reads/CB6945/./WTCHG_15227_read2.fastq /data/maqgene/reads/CB6633.3/./s_4_2_sequence_read2.fastq) 1592611249.2.fastq.
for stem in 00000 00001 00002 00003 00004 00005 00006 00007 00008 00009 00010 00011 00012 00013 00014 00015 00016 00017 00018 00019 00020 00021 00022 00023 00024 00025 00026 00027 00028 00029 00030 00031 00032 00033 00034 00035 00036 00037 00038 00039 00040 00041 00042 00043 00044 00045 00046 00047 00048 00049 00050 00051 00052 00053 00054 00055 00056 00057 00058 00059 00060 00061 00062 00063 00064 00065 00066 00067 00068 00069 00070 00071 00072 00073 00074 00075 00076 00077 00078 00079 00080 00081 00082 00083 00084 00085 00086 00087 00088 00089 00090 00091 00092 00093 00094 00095 00096 00097 00098 00099 00100 00101 00102 00103 00104 00105 00106 00107 00108 00109 00110 00111 00112 00113 00114 00115 00116 00117 00118 00119 00120 00121 00122 00123 00124 00125 00126 00127 00128 00129 00130 00131 00132 00133 00134 00135 00136 00137 00138 00139 00140 00141 00142 00143 00144 00145 00146 00147 00148 00149 00150 00151 00152 00153 00154 00155 00156 00157 00158 00159; do mv 1592611249.2.fastq.$stem 1592611249.$stem.2.fastq; done
touch 3031186332_split2
# Mon Nov 28 20:29:22 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00000.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00000.1.bfq
-- finish writing file '1592611249.00000.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:29:38 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00013.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00013.1.bfq
-- finish writing file '1592611249.00013.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:29:53 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00014.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00014.1.bfq
-- finish writing file '1592611249.00014.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:30:08 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00015.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00015.1.bfq
-- finish writing file '1592611249.00015.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:30:23 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00016.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00016.1.bfq
-- finish writing file '1592611249.00016.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:30:39 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00017.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00017.1.bfq
-- finish writing file '1592611249.00017.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:30:55 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00018.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00018.1.bfq
-- finish writing file '1592611249.00018.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:31:13 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00019.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00019.1.bfq
-- finish writing file '1592611249.00019.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:31:30 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00020.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00020.1.bfq
-- finish writing file '1592611249.00020.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:31:47 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00021.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00021.1.bfq
-- finish writing file '1592611249.00021.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:32:03 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00022.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00022.1.bfq
-- finish writing file '1592611249.00022.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:32:19 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00023.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00023.1.bfq
-- finish writing file '1592611249.00023.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:32:35 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00024.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00024.1.bfq
-- finish writing file '1592611249.00024.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:32:50 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00025.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00025.1.bfq
-- finish writing file '1592611249.00025.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:33:06 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00026.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00026.1.bfq
-- finish writing file '1592611249.00026.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:33:21 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00027.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00027.1.bfq
-- finish writing file '1592611249.00027.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:33:37 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00028.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00028.1.bfq
-- finish writing file '1592611249.00028.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:33:53 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00029.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00029.1.bfq
-- finish writing file '1592611249.00029.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:34:10 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00030.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00030.1.bfq
-- finish writing file '1592611249.00030.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:34:23 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00031.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00031.1.bfq
-- finish writing file '1592611249.00031.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:34:38 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00032.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00032.1.bfq
-- finish writing file '1592611249.00032.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:34:52 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00033.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00033.1.bfq
-- finish writing file '1592611249.00033.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:35:08 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00034.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00034.1.bfq
-- finish writing file '1592611249.00034.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:35:25 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00035.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00035.1.bfq
-- finish writing file '1592611249.00035.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:35:41 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00036.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00036.1.bfq
-- finish writing file '1592611249.00036.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:35:56 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00037.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00037.1.bfq
-- finish writing file '1592611249.00037.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:36:12 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00038.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00038.1.bfq
-- finish writing file '1592611249.00038.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:36:28 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00039.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00039.1.bfq
-- finish writing file '1592611249.00039.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:36:44 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00040.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00040.1.bfq
-- finish writing file '1592611249.00040.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:36:57 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00041.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00041.1.bfq
-- finish writing file '1592611249.00041.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:37:12 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00042.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00042.1.bfq
-- finish writing file '1592611249.00042.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:37:28 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00043.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00043.1.bfq
-- finish writing file '1592611249.00043.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:37:43 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00044.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00044.1.bfq
-- finish writing file '1592611249.00044.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:38:00 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00045.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00045.1.bfq
-- finish writing file '1592611249.00045.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:38:17 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00046.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00046.1.bfq
-- finish writing file '1592611249.00046.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:38:32 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00047.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00047.1.bfq
-- finish writing file '1592611249.00047.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:38:46 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00048.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00048.1.bfq
-- finish writing file '1592611249.00048.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:39:04 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00049.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00049.1.bfq
-- finish writing file '1592611249.00049.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:39:19 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00050.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00050.1.bfq
-- finish writing file '1592611249.00050.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:39:34 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00051.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00051.1.bfq
-- finish writing file '1592611249.00051.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:39:50 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00052.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00052.1.bfq
-- finish writing file '1592611249.00052.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:40:06 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00053.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00053.1.bfq
-- finish writing file '1592611249.00053.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:40:21 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00054.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00054.1.bfq
-- finish writing file '1592611249.00054.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:40:36 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00055.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00055.1.bfq
-- finish writing file '1592611249.00055.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:40:52 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00056.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00056.1.bfq
-- finish writing file '1592611249.00056.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:41:08 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00057.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00057.1.bfq
-- finish writing file '1592611249.00057.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:41:24 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00058.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00058.1.bfq
-- finish writing file '1592611249.00058.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:41:39 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00059.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00059.1.bfq
-- finish writing file '1592611249.00059.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:41:54 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00060.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00060.1.bfq
-- finish writing file '1592611249.00060.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:42:09 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00061.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00061.1.bfq
-- finish writing file '1592611249.00061.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:42:24 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00062.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00062.1.bfq
-- finish writing file '1592611249.00062.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:42:39 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00063.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00063.1.bfq
-- finish writing file '1592611249.00063.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:42:54 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00064.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00064.1.bfq
-- finish writing file '1592611249.00064.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:43:12 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00065.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00065.1.bfq
-- finish writing file '1592611249.00065.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:43:26 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00066.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00066.1.bfq
-- finish writing file '1592611249.00066.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:43:40 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00067.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00067.1.bfq
-- finish writing file '1592611249.00067.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:43:56 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00068.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00068.1.bfq
-- finish writing file '1592611249.00068.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:44:12 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00069.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00069.1.bfq
-- finish writing file '1592611249.00069.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:44:26 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00070.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00070.1.bfq
-- finish writing file '1592611249.00070.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:44:40 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00071.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00071.1.bfq
-- finish writing file '1592611249.00071.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:44:55 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00072.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00072.1.bfq
-- finish writing file '1592611249.00072.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:45:10 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00073.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00073.1.bfq
-- finish writing file '1592611249.00073.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:45:24 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00074.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00074.1.bfq
-- finish writing file '1592611249.00074.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:45:38 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00075.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00075.1.bfq
-- finish writing file '1592611249.00075.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:45:54 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00076.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00076.1.bfq
-- finish writing file '1592611249.00076.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:46:08 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00077.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00077.1.bfq
-- finish writing file '1592611249.00077.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:46:23 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00078.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00078.1.bfq
-- finish writing file '1592611249.00078.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:46:36 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00079.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00079.1.bfq
-- finish writing file '1592611249.00079.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:46:52 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00080.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00080.1.bfq
-- finish writing file '1592611249.00080.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:47:07 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00081.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00081.1.bfq
-- finish writing file '1592611249.00081.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:47:23 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00082.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00082.1.bfq
-- finish writing file '1592611249.00082.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:47:40 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00083.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00083.1.bfq
-- finish writing file '1592611249.00083.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:47:56 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00084.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00084.1.bfq
-- finish writing file '1592611249.00084.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:48:10 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00085.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00085.1.bfq
-- finish writing file '1592611249.00085.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:48:26 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00086.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00086.1.bfq
-- finish writing file '1592611249.00086.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:48:44 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00087.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00087.1.bfq
-- finish writing file '1592611249.00087.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:49:00 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00088.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00088.1.bfq
-- finish writing file '1592611249.00088.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:49:17 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00089.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00089.1.bfq
-- finish writing file '1592611249.00089.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:49:35 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00090.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00090.1.bfq
-- finish writing file '1592611249.00090.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:49:51 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00091.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00091.1.bfq
-- finish writing file '1592611249.00091.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:50:07 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00092.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00092.1.bfq
-- finish writing file '1592611249.00092.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:50:24 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00093.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00093.1.bfq
-- finish writing file '1592611249.00093.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:50:40 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00094.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00094.1.bfq
-- finish writing file '1592611249.00094.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:50:56 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00095.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00095.1.bfq
-- finish writing file '1592611249.00095.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:51:12 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00096.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00096.1.bfq
-- finish writing file '1592611249.00096.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:51:28 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00097.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00097.1.bfq
-- finish writing file '1592611249.00097.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:51:43 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00098.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00098.1.bfq
-- finish writing file '1592611249.00098.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:52:00 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00099.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00099.1.bfq
-- finish writing file '1592611249.00099.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:52:16 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00100.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00100.1.bfq
-- finish writing file '1592611249.00100.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:52:32 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00101.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00101.1.bfq
-- finish writing file '1592611249.00101.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:52:49 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00102.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00102.1.bfq
-- finish writing file '1592611249.00102.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:53:05 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00103.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00103.1.bfq
-- finish writing file '1592611249.00103.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:53:22 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00104.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00104.1.bfq
-- finish writing file '1592611249.00104.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:53:39 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00105.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00105.1.bfq
-- finish writing file '1592611249.00105.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:53:56 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00106.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00106.1.bfq
-- finish writing file '1592611249.00106.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:54:12 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00107.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00107.1.bfq
-- finish writing file '1592611249.00107.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:54:27 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00108.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00108.1.bfq
-- finish writing file '1592611249.00108.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:54:45 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00109.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00109.1.bfq
-- finish writing file '1592611249.00109.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:55:00 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00110.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00110.1.bfq
-- finish writing file '1592611249.00110.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:55:15 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00111.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00111.1.bfq
-- finish writing file '1592611249.00111.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:55:30 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00112.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00112.1.bfq
-- finish writing file '1592611249.00112.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:55:44 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00113.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00113.1.bfq
-- finish writing file '1592611249.00113.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:55:59 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00114.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00114.1.bfq
-- finish writing file '1592611249.00114.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:56:15 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00115.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00115.1.bfq
-- finish writing file '1592611249.00115.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:56:30 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00116.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00116.1.bfq
-- finish writing file '1592611249.00116.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:56:46 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00117.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00117.1.bfq
-- finish writing file '1592611249.00117.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:57:01 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00118.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00118.1.bfq
-- finish writing file '1592611249.00118.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:57:17 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00119.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00119.1.bfq
-- finish writing file '1592611249.00119.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:57:31 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00120.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00120.1.bfq
-- finish writing file '1592611249.00120.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:57:47 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00121.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00121.1.bfq
-- finish writing file '1592611249.00121.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:58:03 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00122.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00122.1.bfq
-- finish writing file '1592611249.00122.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:58:18 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00123.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00123.1.bfq
-- finish writing file '1592611249.00123.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:58:33 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00124.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00124.1.bfq
-- finish writing file '1592611249.00124.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:58:48 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00125.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00125.1.bfq
-- finish writing file '1592611249.00125.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:59:03 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00126.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00126.1.bfq
-- finish writing file '1592611249.00126.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:59:19 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00127.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00127.1.bfq
-- finish writing file '1592611249.00127.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:59:35 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00128.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00128.1.bfq
-- finish writing file '1592611249.00128.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 20:59:50 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00129.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00129.1.bfq
-- finish writing file '1592611249.00129.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:00:06 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00130.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00130.1.bfq
-- finish writing file '1592611249.00130.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:00:21 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00131.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00131.1.bfq
-- finish writing file '1592611249.00131.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:00:36 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00132.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00132.1.bfq
-- finish writing file '1592611249.00132.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:00:51 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00133.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00133.1.bfq
-- finish writing file '1592611249.00133.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:01:06 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00134.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00134.1.bfq
-- finish writing file '1592611249.00134.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:01:21 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00135.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00135.1.bfq
-- finish writing file '1592611249.00135.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:01:37 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00136.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00136.1.bfq
-- finish writing file '1592611249.00136.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:01:53 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00137.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00137.1.bfq
-- finish writing file '1592611249.00137.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:02:07 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00138.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00138.1.bfq
-- finish writing file '1592611249.00138.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:02:24 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00139.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00139.1.bfq
-- finish writing file '1592611249.00139.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:02:40 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00140.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00140.1.bfq
-- finish writing file '1592611249.00140.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:02:56 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00141.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00141.1.bfq
-- finish writing file '1592611249.00141.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:03:11 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00142.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00142.1.bfq
-- finish writing file '1592611249.00142.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:03:27 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00143.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00143.1.bfq
-- finish writing file '1592611249.00143.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:03:43 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00144.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00144.1.bfq
-- finish writing file '1592611249.00144.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:03:56 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00145.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00145.1.bfq
-- finish writing file '1592611249.00145.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:04:12 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00146.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00146.1.bfq
-- finish writing file '1592611249.00146.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:04:27 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00147.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00147.1.bfq
-- finish writing file '1592611249.00147.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:04:41 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00148.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00148.1.bfq
-- finish writing file '1592611249.00148.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:04:57 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00149.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00149.1.bfq
-- finish writing file '1592611249.00149.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:05:12 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00150.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00150.1.bfq
-- finish writing file '1592611249.00150.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:05:27 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00151.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00151.1.bfq
-- finish writing file '1592611249.00151.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:05:43 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00152.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00152.1.bfq
-- finish writing file '1592611249.00152.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:05:58 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00153.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00153.1.bfq
-- finish writing file '1592611249.00153.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:06:13 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00154.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00154.1.bfq
-- finish writing file '1592611249.00154.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:06:29 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00155.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00155.1.bfq
-- finish writing file '1592611249.00155.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:06:44 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00156.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00156.1.bfq
-- finish writing file '1592611249.00156.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:07:00 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00157.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00157.1.bfq
-- finish writing file '1592611249.00157.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:07:15 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00158.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00158.1.bfq
-- finish writing file '1592611249.00158.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:07:31 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00159.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00159.1.bfq
-- finish writing file '1592611249.00159.1.bfq'
-- 301649 sequences were loaded.
# Mon Nov 28 21:07:35 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00000.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00000.2.bfq
-- finish writing file '1592611249.00000.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:07:51 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00001.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00001.2.bfq
-- finish writing file '1592611249.00001.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:08:07 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00002.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00002.2.bfq
-- finish writing file '1592611249.00002.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:08:21 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00003.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00003.2.bfq
-- finish writing file '1592611249.00003.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:08:37 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00004.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00004.2.bfq
-- finish writing file '1592611249.00004.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:08:58 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00005.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00005.2.bfq
-- finish writing file '1592611249.00005.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:09:19 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00006.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00006.2.bfq
-- finish writing file '1592611249.00006.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:09:36 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00007.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00007.2.bfq
-- finish writing file '1592611249.00007.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:09:52 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00008.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00008.2.bfq
-- finish writing file '1592611249.00008.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:10:12 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00009.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00009.2.bfq
-- finish writing file '1592611249.00009.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:10:35 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00010.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00010.2.bfq
-- finish writing file '1592611249.00010.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:11:00 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00011.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00011.2.bfq
-- finish writing file '1592611249.00011.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:11:21 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00012.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00012.2.bfq
-- finish writing file '1592611249.00012.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:11:39 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00013.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00013.2.bfq
-- finish writing file '1592611249.00013.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:11:56 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00014.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00014.2.bfq
-- finish writing file '1592611249.00014.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:12:17 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00015.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00015.2.bfq
-- finish writing file '1592611249.00015.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:12:42 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00016.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00016.2.bfq
-- finish writing file '1592611249.00016.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:13:09 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00017.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00017.2.bfq
-- finish writing file '1592611249.00017.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:13:35 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00018.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00018.2.bfq
-- finish writing file '1592611249.00018.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:14:02 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00019.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00019.2.bfq
-- finish writing file '1592611249.00019.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:14:30 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00020.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00020.2.bfq
-- finish writing file '1592611249.00020.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:14:57 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00021.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00021.2.bfq
-- finish writing file '1592611249.00021.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:15:23 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00022.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00022.2.bfq
-- finish writing file '1592611249.00022.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:15:50 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00023.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00023.2.bfq
-- finish writing file '1592611249.00023.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:16:18 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00024.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00024.2.bfq
-- finish writing file '1592611249.00024.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:16:45 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00025.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00025.2.bfq
-- finish writing file '1592611249.00025.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:17:12 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00026.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00026.2.bfq
-- finish writing file '1592611249.00026.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:17:39 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00027.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00027.2.bfq
-- finish writing file '1592611249.00027.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:18:06 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00028.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00028.2.bfq
-- finish writing file '1592611249.00028.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:18:34 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00029.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00029.2.bfq
-- finish writing file '1592611249.00029.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:19:01 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00030.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00030.2.bfq
-- finish writing file '1592611249.00030.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:19:28 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00031.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00031.2.bfq
-- finish writing file '1592611249.00031.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:19:55 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00032.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00032.2.bfq
-- finish writing file '1592611249.00032.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:20:22 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00033.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00033.2.bfq
-- finish writing file '1592611249.00033.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:20:48 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00034.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00034.2.bfq
-- finish writing file '1592611249.00034.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:21:15 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00035.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00035.2.bfq
-- finish writing file '1592611249.00035.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:21:43 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00036.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00036.2.bfq
-- finish writing file '1592611249.00036.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:22:10 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00037.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00037.2.bfq
-- finish writing file '1592611249.00037.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:22:37 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00038.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00038.2.bfq
-- finish writing file '1592611249.00038.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:23:07 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00039.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00039.2.bfq
-- finish writing file '1592611249.00039.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:23:34 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00040.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00040.2.bfq
-- finish writing file '1592611249.00040.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:24:02 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00041.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00041.2.bfq
-- finish writing file '1592611249.00041.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:24:29 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00042.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00042.2.bfq
-- finish writing file '1592611249.00042.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:24:56 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00043.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00043.2.bfq
-- finish writing file '1592611249.00043.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:25:23 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00044.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00044.2.bfq
-- finish writing file '1592611249.00044.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:25:50 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00045.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00045.2.bfq
-- finish writing file '1592611249.00045.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:26:17 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00046.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00046.2.bfq
-- finish writing file '1592611249.00046.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:26:43 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00047.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00047.2.bfq
-- finish writing file '1592611249.00047.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:27:09 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00048.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00048.2.bfq
-- finish writing file '1592611249.00048.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:27:37 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00049.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00049.2.bfq
-- finish writing file '1592611249.00049.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:28:06 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00050.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00050.2.bfq
-- finish writing file '1592611249.00050.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:28:34 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00051.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00051.2.bfq
-- finish writing file '1592611249.00051.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:28:59 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00052.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00052.2.bfq
-- finish writing file '1592611249.00052.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:29:26 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00053.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00053.2.bfq
-- finish writing file '1592611249.00053.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:29:52 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00054.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00054.2.bfq
-- finish writing file '1592611249.00054.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:30:19 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00055.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00055.2.bfq
-- finish writing file '1592611249.00055.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:30:45 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00056.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00056.2.bfq
-- finish writing file '1592611249.00056.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:31:13 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00057.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00057.2.bfq
-- finish writing file '1592611249.00057.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:31:40 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00058.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00058.2.bfq
-- finish writing file '1592611249.00058.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:32:08 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00059.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00059.2.bfq
-- finish writing file '1592611249.00059.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:32:35 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00060.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00060.2.bfq
-- finish writing file '1592611249.00060.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:33:02 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00061.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00061.2.bfq
-- finish writing file '1592611249.00061.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:33:30 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00062.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00062.2.bfq
-- finish writing file '1592611249.00062.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:33:57 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00063.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00063.2.bfq
-- finish writing file '1592611249.00063.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:34:25 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00064.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00064.2.bfq
-- finish writing file '1592611249.00064.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:34:53 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00065.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00065.2.bfq
-- finish writing file '1592611249.00065.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:35:21 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00066.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00066.2.bfq
-- finish writing file '1592611249.00066.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:35:49 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00067.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00067.2.bfq
-- finish writing file '1592611249.00067.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:36:17 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00068.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00068.2.bfq
-- finish writing file '1592611249.00068.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:36:43 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00069.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00069.2.bfq
-- finish writing file '1592611249.00069.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:37:20 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00070.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00070.2.bfq
-- finish writing file '1592611249.00070.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:37:56 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00071.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00071.2.bfq
-- finish writing file '1592611249.00071.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:38:22 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00072.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00072.2.bfq
-- finish writing file '1592611249.00072.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:38:49 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00073.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00073.2.bfq
-- finish writing file '1592611249.00073.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:39:18 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00074.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00074.2.bfq
-- finish writing file '1592611249.00074.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:39:41 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00075.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00075.2.bfq
-- finish writing file '1592611249.00075.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:40:09 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00076.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00076.2.bfq
-- finish writing file '1592611249.00076.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:40:35 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00077.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00077.2.bfq
-- finish writing file '1592611249.00077.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:41:01 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00078.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00078.2.bfq
-- finish writing file '1592611249.00078.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:41:27 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00079.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00079.2.bfq
-- finish writing file '1592611249.00079.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:41:56 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00080.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00080.2.bfq
-- finish writing file '1592611249.00080.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:42:25 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00081.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00081.2.bfq
-- finish writing file '1592611249.00081.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:42:54 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00082.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00082.2.bfq
-- finish writing file '1592611249.00082.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:43:23 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00083.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00083.2.bfq
-- finish writing file '1592611249.00083.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:43:51 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00084.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00084.2.bfq
-- finish writing file '1592611249.00084.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:44:21 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00085.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00085.2.bfq
-- finish writing file '1592611249.00085.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:44:51 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00086.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00086.2.bfq
-- finish writing file '1592611249.00086.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:45:20 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00087.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00087.2.bfq
-- finish writing file '1592611249.00087.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:45:48 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00088.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00088.2.bfq
-- finish writing file '1592611249.00088.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:46:19 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00089.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00089.2.bfq
-- finish writing file '1592611249.00089.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:46:49 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00090.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00090.2.bfq
-- finish writing file '1592611249.00090.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:47:17 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00091.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00091.2.bfq
-- finish writing file '1592611249.00091.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:47:47 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00092.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00092.2.bfq
-- finish writing file '1592611249.00092.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:48:13 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00093.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00093.2.bfq
-- finish writing file '1592611249.00093.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:48:41 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00094.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00094.2.bfq
-- finish writing file '1592611249.00094.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:49:09 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00095.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00095.2.bfq
-- finish writing file '1592611249.00095.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:49:47 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00096.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00096.2.bfq
-- finish writing file '1592611249.00096.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:50:15 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00097.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00097.2.bfq
-- finish writing file '1592611249.00097.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:50:43 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00098.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00098.2.bfq
-- finish writing file '1592611249.00098.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:51:12 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00099.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00099.2.bfq
-- finish writing file '1592611249.00099.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:51:40 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00100.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00100.2.bfq
-- finish writing file '1592611249.00100.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:52:08 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00101.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00101.2.bfq
-- finish writing file '1592611249.00101.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:52:35 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00102.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00102.2.bfq
-- finish writing file '1592611249.00102.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:53:04 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00103.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00103.2.bfq
-- finish writing file '1592611249.00103.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:53:33 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00104.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00104.2.bfq
-- finish writing file '1592611249.00104.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:54:03 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00105.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00105.2.bfq
-- finish writing file '1592611249.00105.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:55:06 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00106.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00106.2.bfq
-- finish writing file '1592611249.00106.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:56:53 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00107.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00107.2.bfq
-- finish writing file '1592611249.00107.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 21:58:44 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00108.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00108.2.bfq
-- finish writing file '1592611249.00108.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:00:32 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00109.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00109.2.bfq
-- finish writing file '1592611249.00109.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:01:09 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00110.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00110.2.bfq
-- finish writing file '1592611249.00110.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:01:37 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00111.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00111.2.bfq
-- finish writing file '1592611249.00111.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:02:03 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00112.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00112.2.bfq
-- finish writing file '1592611249.00112.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:02:30 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00113.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00113.2.bfq
-- finish writing file '1592611249.00113.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:02:57 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00114.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00114.2.bfq
-- finish writing file '1592611249.00114.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:03:23 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00115.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00115.2.bfq
-- finish writing file '1592611249.00115.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:03:50 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00116.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00116.2.bfq
-- finish writing file '1592611249.00116.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:04:16 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00117.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00117.2.bfq
-- finish writing file '1592611249.00117.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:04:43 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00118.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00118.2.bfq
-- finish writing file '1592611249.00118.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:05:10 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00119.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00119.2.bfq
-- finish writing file '1592611249.00119.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:05:37 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00120.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00120.2.bfq
-- finish writing file '1592611249.00120.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:06:05 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00121.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00121.2.bfq
-- finish writing file '1592611249.00121.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:06:32 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00122.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00122.2.bfq
-- finish writing file '1592611249.00122.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:07:00 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00123.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00123.2.bfq
-- finish writing file '1592611249.00123.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:07:27 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00124.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00124.2.bfq
-- finish writing file '1592611249.00124.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:07:54 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00125.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00125.2.bfq
-- finish writing file '1592611249.00125.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:08:22 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00126.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00126.2.bfq
-- finish writing file '1592611249.00126.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:08:50 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00127.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00127.2.bfq
-- finish writing file '1592611249.00127.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:09:16 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00128.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00128.2.bfq
-- finish writing file '1592611249.00128.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:09:43 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00129.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00129.2.bfq
-- finish writing file '1592611249.00129.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:10:09 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00130.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00130.2.bfq
-- finish writing file '1592611249.00130.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:10:34 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00131.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00131.2.bfq
-- finish writing file '1592611249.00131.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:10:58 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00132.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00132.2.bfq
-- finish writing file '1592611249.00132.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:11:12 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00133.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00133.2.bfq
-- finish writing file '1592611249.00133.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:11:26 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00134.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00134.2.bfq
-- finish writing file '1592611249.00134.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:11:41 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00135.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00135.2.bfq
-- finish writing file '1592611249.00135.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:11:57 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00136.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00136.2.bfq
-- finish writing file '1592611249.00136.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:12:11 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00137.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00137.2.bfq
-- finish writing file '1592611249.00137.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:12:25 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00138.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00138.2.bfq
-- finish writing file '1592611249.00138.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:12:42 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00139.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00139.2.bfq
-- finish writing file '1592611249.00139.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:12:57 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00140.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00140.2.bfq
-- finish writing file '1592611249.00140.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:13:10 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00141.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00141.2.bfq
-- finish writing file '1592611249.00141.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:13:27 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00142.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00142.2.bfq
-- finish writing file '1592611249.00142.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:13:43 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00143.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00143.2.bfq
-- finish writing file '1592611249.00143.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:13:59 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00144.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00144.2.bfq
-- finish writing file '1592611249.00144.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:14:14 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00145.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00145.2.bfq
-- finish writing file '1592611249.00145.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:14:29 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00146.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00146.2.bfq
-- finish writing file '1592611249.00146.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:14:46 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00147.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00147.2.bfq
-- finish writing file '1592611249.00147.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:15:02 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00148.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00148.2.bfq
-- finish writing file '1592611249.00148.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:15:15 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00149.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00149.2.bfq
-- finish writing file '1592611249.00149.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:15:28 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00150.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00150.2.bfq
-- finish writing file '1592611249.00150.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:15:44 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00151.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00151.2.bfq
-- finish writing file '1592611249.00151.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:16:01 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00152.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00152.2.bfq
-- finish writing file '1592611249.00152.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:16:16 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00153.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00153.2.bfq
-- finish writing file '1592611249.00153.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:16:33 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00154.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00154.2.bfq
-- finish writing file '1592611249.00154.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:16:49 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00155.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00155.2.bfq
-- finish writing file '1592611249.00155.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:17:04 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00156.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00156.2.bfq
-- finish writing file '1592611249.00156.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:17:20 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00157.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00157.2.bfq
-- finish writing file '1592611249.00157.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:17:34 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00158.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00158.2.bfq
-- finish writing file '1592611249.00158.2.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:17:49 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00159.2.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00159.2.bfq
-- finish writing file '1592611249.00159.2.bfq'
-- 301649 sequences were loaded.
# Mon Nov 28 22:17:53 GMT 2011: Mapping file(s) 1592611249.00000.1.bfq 1592611249.00000.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00000.unmapped -H 1592611249.00000.mismatch \
	1592611249.00000.map /data/maqgene/genomes/elegans.bfa 1592611249.00000.1.bfq 1592611249.00000.2.bfq 2> /dev/null
# Mon Nov 28 22:23:42 GMT 2011: Mapping file(s) 1592611249.00013.1.bfq 1592611249.00013.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00013.unmapped -H 1592611249.00013.mismatch \
	1592611249.00013.map /data/maqgene/genomes/elegans.bfa 1592611249.00013.1.bfq 1592611249.00013.2.bfq 2> /dev/null
# Mon Nov 28 22:29:24 GMT 2011: Mapping file(s) 1592611249.00014.1.bfq 1592611249.00014.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00014.unmapped -H 1592611249.00014.mismatch \
	1592611249.00014.map /data/maqgene/genomes/elegans.bfa 1592611249.00014.1.bfq 1592611249.00014.2.bfq 2> /dev/null
# Mon Nov 28 22:35:11 GMT 2011: Mapping file(s) 1592611249.00015.1.bfq 1592611249.00015.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00015.unmapped -H 1592611249.00015.mismatch \
	1592611249.00015.map /data/maqgene/genomes/elegans.bfa 1592611249.00015.1.bfq 1592611249.00015.2.bfq 2> /dev/null
# Mon Nov 28 22:41:21 GMT 2011: Mapping file(s) 1592611249.00016.1.bfq 1592611249.00016.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00016.unmapped -H 1592611249.00016.mismatch \
	1592611249.00016.map /data/maqgene/genomes/elegans.bfa 1592611249.00016.1.bfq 1592611249.00016.2.bfq 2> /dev/null
# Mon Nov 28 22:46:52 GMT 2011: Mapping file(s) 1592611249.00017.1.bfq 1592611249.00017.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00017.unmapped -H 1592611249.00017.mismatch \
	1592611249.00017.map /data/maqgene/genomes/elegans.bfa 1592611249.00017.1.bfq 1592611249.00017.2.bfq 2> /dev/null
# Mon Nov 28 22:49:58 GMT 2011: Mapping file(s) 1592611249.00018.1.bfq 1592611249.00018.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00018.unmapped -H 1592611249.00018.mismatch \
	1592611249.00018.map /data/maqgene/genomes/elegans.bfa 1592611249.00018.1.bfq 1592611249.00018.2.bfq 2> /dev/null
# Mon Nov 28 22:49:59 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00012.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00012.1.bfq
# Mon Nov 28 22:50:00 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00011.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00011.1.bfq
# Mon Nov 28 22:50:01 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00010.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00010.1.bfq
# Mon Nov 28 22:50:02 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00009.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00009.1.bfq
-- finish writing file '1592611249.00011.1.bfq'
-- 1250000 sequences were loaded.
-- finish writing file '1592611249.00012.1.bfq'
-- 1250000 sequences were loaded.
-- finish writing file '1592611249.00010.1.bfq'
-- 1250000 sequences were loaded.
-- finish writing file '1592611249.00009.1.bfq'
-- 1250000 sequences were loaded.
# Mon Nov 28 22:55:14 GMT 2011: Mapping file(s) 1592611249.00023.1.bfq 1592611249.00023.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00023.unmapped -H 1592611249.00023.mismatch \
	1592611249.00023.map /data/maqgene/genomes/elegans.bfa 1592611249.00023.1.bfq 1592611249.00023.2.bfq 2> /dev/null
# Mon Nov 28 23:00:02 GMT 2011: Mapping file(s) 1592611249.00024.1.bfq 1592611249.00024.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00024.unmapped -H 1592611249.00024.mismatch \
	1592611249.00024.map /data/maqgene/genomes/elegans.bfa 1592611249.00024.1.bfq 1592611249.00024.2.bfq 2> /dev/null
# Mon Nov 28 23:04:57 GMT 2011: Mapping file(s) 1592611249.00025.1.bfq 1592611249.00025.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00025.unmapped -H 1592611249.00025.mismatch \
	1592611249.00025.map /data/maqgene/genomes/elegans.bfa 1592611249.00025.1.bfq 1592611249.00025.2.bfq 2> /dev/null
# Mon Nov 28 23:09:53 GMT 2011: Mapping file(s) 1592611249.00026.1.bfq 1592611249.00026.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00026.unmapped -H 1592611249.00026.mismatch \
	1592611249.00026.map /data/maqgene/genomes/elegans.bfa 1592611249.00026.1.bfq 1592611249.00026.2.bfq 2> /dev/null
# Mon Nov 28 23:14:45 GMT 2011: Mapping file(s) 1592611249.00027.1.bfq 1592611249.00027.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00027.unmapped -H 1592611249.00027.mismatch \
	1592611249.00027.map /data/maqgene/genomes/elegans.bfa 1592611249.00027.1.bfq 1592611249.00027.2.bfq 2> /dev/null
# Mon Nov 28 23:20:08 GMT 2011: Mapping file(s) 1592611249.00028.1.bfq 1592611249.00028.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00028.unmapped -H 1592611249.00028.mismatch \
	1592611249.00028.map /data/maqgene/genomes/elegans.bfa 1592611249.00028.1.bfq 1592611249.00028.2.bfq 2> /dev/null
# Mon Nov 28 23:25:49 GMT 2011: Mapping file(s) 1592611249.00029.1.bfq 1592611249.00029.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00029.unmapped -H 1592611249.00029.mismatch \
	1592611249.00029.map /data/maqgene/genomes/elegans.bfa 1592611249.00029.1.bfq 1592611249.00029.2.bfq 2> /dev/null
# Mon Nov 28 23:31:30 GMT 2011: Mapping file(s) 1592611249.00030.1.bfq 1592611249.00030.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00030.unmapped -H 1592611249.00030.mismatch \
	1592611249.00030.map /data/maqgene/genomes/elegans.bfa 1592611249.00030.1.bfq 1592611249.00030.2.bfq 2> /dev/null
# Mon Nov 28 23:37:27 GMT 2011: Mapping file(s) 1592611249.00031.1.bfq 1592611249.00031.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00031.unmapped -H 1592611249.00031.mismatch \
	1592611249.00031.map /data/maqgene/genomes/elegans.bfa 1592611249.00031.1.bfq 1592611249.00031.2.bfq 2> /dev/null
# Mon Nov 28 23:43:27 GMT 2011: Mapping file(s) 1592611249.00032.1.bfq 1592611249.00032.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00032.unmapped -H 1592611249.00032.mismatch \
	1592611249.00032.map /data/maqgene/genomes/elegans.bfa 1592611249.00032.1.bfq 1592611249.00032.2.bfq 2> /dev/null
# Mon Nov 28 23:49:24 GMT 2011: Mapping file(s) 1592611249.00033.1.bfq 1592611249.00033.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00033.unmapped -H 1592611249.00033.mismatch \
	1592611249.00033.map /data/maqgene/genomes/elegans.bfa 1592611249.00033.1.bfq 1592611249.00033.2.bfq 2> /dev/null
# Mon Nov 28 23:55:27 GMT 2011: Mapping file(s) 1592611249.00034.1.bfq 1592611249.00034.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00034.unmapped -H 1592611249.00034.mismatch \
	1592611249.00034.map /data/maqgene/genomes/elegans.bfa 1592611249.00034.1.bfq 1592611249.00034.2.bfq 2> /dev/null
# Tue Nov 29 00:01:26 GMT 2011: Mapping file(s) 1592611249.00035.1.bfq 1592611249.00035.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00035.unmapped -H 1592611249.00035.mismatch \
	1592611249.00035.map /data/maqgene/genomes/elegans.bfa 1592611249.00035.1.bfq 1592611249.00035.2.bfq 2> /dev/null
# Tue Nov 29 00:07:17 GMT 2011: Mapping file(s) 1592611249.00036.1.bfq 1592611249.00036.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00036.unmapped -H 1592611249.00036.mismatch \
	1592611249.00036.map /data/maqgene/genomes/elegans.bfa 1592611249.00036.1.bfq 1592611249.00036.2.bfq 2> /dev/null
# Tue Nov 29 00:13:23 GMT 2011: Mapping file(s) 1592611249.00037.1.bfq 1592611249.00037.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00037.unmapped -H 1592611249.00037.mismatch \
	1592611249.00037.map /data/maqgene/genomes/elegans.bfa 1592611249.00037.1.bfq 1592611249.00037.2.bfq 2> /dev/null
# Tue Nov 29 00:19:17 GMT 2011: Mapping file(s) 1592611249.00038.1.bfq 1592611249.00038.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00038.unmapped -H 1592611249.00038.mismatch \
	1592611249.00038.map /data/maqgene/genomes/elegans.bfa 1592611249.00038.1.bfq 1592611249.00038.2.bfq 2> /dev/null
# Tue Nov 29 00:25:14 GMT 2011: Mapping file(s) 1592611249.00039.1.bfq 1592611249.00039.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00039.unmapped -H 1592611249.00039.mismatch \
	1592611249.00039.map /data/maqgene/genomes/elegans.bfa 1592611249.00039.1.bfq 1592611249.00039.2.bfq 2> /dev/null
# Tue Nov 29 00:31:13 GMT 2011: Mapping file(s) 1592611249.00040.1.bfq 1592611249.00040.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00040.unmapped -H 1592611249.00040.mismatch \
	1592611249.00040.map /data/maqgene/genomes/elegans.bfa 1592611249.00040.1.bfq 1592611249.00040.2.bfq 2> /dev/null
# Tue Nov 29 00:37:19 GMT 2011: Mapping file(s) 1592611249.00041.1.bfq 1592611249.00041.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00041.unmapped -H 1592611249.00041.mismatch \
	1592611249.00041.map /data/maqgene/genomes/elegans.bfa 1592611249.00041.1.bfq 1592611249.00041.2.bfq 2> /dev/null
# Tue Nov 29 00:43:23 GMT 2011: Mapping file(s) 1592611249.00042.1.bfq 1592611249.00042.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00042.unmapped -H 1592611249.00042.mismatch \
	1592611249.00042.map /data/maqgene/genomes/elegans.bfa 1592611249.00042.1.bfq 1592611249.00042.2.bfq 2> /dev/null
# Tue Nov 29 00:49:25 GMT 2011: Mapping file(s) 1592611249.00043.1.bfq 1592611249.00043.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00043.unmapped -H 1592611249.00043.mismatch \
	1592611249.00043.map /data/maqgene/genomes/elegans.bfa 1592611249.00043.1.bfq 1592611249.00043.2.bfq 2> /dev/null
# Tue Nov 29 00:55:33 GMT 2011: Mapping file(s) 1592611249.00044.1.bfq 1592611249.00044.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00044.unmapped -H 1592611249.00044.mismatch \
	1592611249.00044.map /data/maqgene/genomes/elegans.bfa 1592611249.00044.1.bfq 1592611249.00044.2.bfq 2> /dev/null
# Tue Nov 29 01:03:38 GMT 2011: Mapping file(s) 1592611249.00045.1.bfq 1592611249.00045.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00045.unmapped -H 1592611249.00045.mismatch \
	1592611249.00045.map /data/maqgene/genomes/elegans.bfa 1592611249.00045.1.bfq 1592611249.00045.2.bfq 2> /dev/null
# Tue Nov 29 01:11:19 GMT 2011: Mapping file(s) 1592611249.00046.1.bfq 1592611249.00046.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00046.unmapped -H 1592611249.00046.mismatch \
	1592611249.00046.map /data/maqgene/genomes/elegans.bfa 1592611249.00046.1.bfq 1592611249.00046.2.bfq 2> /dev/null
# Tue Nov 29 01:19:18 GMT 2011: Mapping file(s) 1592611249.00047.1.bfq 1592611249.00047.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00047.unmapped -H 1592611249.00047.mismatch \
	1592611249.00047.map /data/maqgene/genomes/elegans.bfa 1592611249.00047.1.bfq 1592611249.00047.2.bfq 2> /dev/null
# Tue Nov 29 01:26:14 GMT 2011: Mapping file(s) 1592611249.00048.1.bfq 1592611249.00048.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00048.unmapped -H 1592611249.00048.mismatch \
	1592611249.00048.map /data/maqgene/genomes/elegans.bfa 1592611249.00048.1.bfq 1592611249.00048.2.bfq 2> /dev/null
# Tue Nov 29 01:33:25 GMT 2011: Mapping file(s) 1592611249.00049.1.bfq 1592611249.00049.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00049.unmapped -H 1592611249.00049.mismatch \
	1592611249.00049.map /data/maqgene/genomes/elegans.bfa 1592611249.00049.1.bfq 1592611249.00049.2.bfq 2> /dev/null
# Tue Nov 29 01:40:31 GMT 2011: Mapping file(s) 1592611249.00050.1.bfq 1592611249.00050.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00050.unmapped -H 1592611249.00050.mismatch \
	1592611249.00050.map /data/maqgene/genomes/elegans.bfa 1592611249.00050.1.bfq 1592611249.00050.2.bfq 2> /dev/null
# Tue Nov 29 01:47:44 GMT 2011: Mapping file(s) 1592611249.00051.1.bfq 1592611249.00051.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00051.unmapped -H 1592611249.00051.mismatch \
	1592611249.00051.map /data/maqgene/genomes/elegans.bfa 1592611249.00051.1.bfq 1592611249.00051.2.bfq 2> /dev/null
# Tue Nov 29 01:54:53 GMT 2011: Mapping file(s) 1592611249.00052.1.bfq 1592611249.00052.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00052.unmapped -H 1592611249.00052.mismatch \
	1592611249.00052.map /data/maqgene/genomes/elegans.bfa 1592611249.00052.1.bfq 1592611249.00052.2.bfq 2> /dev/null
# Tue Nov 29 02:02:07 GMT 2011: Mapping file(s) 1592611249.00053.1.bfq 1592611249.00053.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00053.unmapped -H 1592611249.00053.mismatch \
	1592611249.00053.map /data/maqgene/genomes/elegans.bfa 1592611249.00053.1.bfq 1592611249.00053.2.bfq 2> /dev/null
# Tue Nov 29 02:09:19 GMT 2011: Mapping file(s) 1592611249.00054.1.bfq 1592611249.00054.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00054.unmapped -H 1592611249.00054.mismatch \
	1592611249.00054.map /data/maqgene/genomes/elegans.bfa 1592611249.00054.1.bfq 1592611249.00054.2.bfq 2> /dev/null
# Tue Nov 29 02:16:41 GMT 2011: Mapping file(s) 1592611249.00055.1.bfq 1592611249.00055.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00055.unmapped -H 1592611249.00055.mismatch \
	1592611249.00055.map /data/maqgene/genomes/elegans.bfa 1592611249.00055.1.bfq 1592611249.00055.2.bfq 2> /dev/null
# Tue Nov 29 02:23:51 GMT 2011: Mapping file(s) 1592611249.00056.1.bfq 1592611249.00056.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00056.unmapped -H 1592611249.00056.mismatch \
	1592611249.00056.map /data/maqgene/genomes/elegans.bfa 1592611249.00056.1.bfq 1592611249.00056.2.bfq 2> /dev/null
# Tue Nov 29 02:30:37 GMT 2011: Mapping file(s) 1592611249.00057.1.bfq 1592611249.00057.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00057.unmapped -H 1592611249.00057.mismatch \
	1592611249.00057.map /data/maqgene/genomes/elegans.bfa 1592611249.00057.1.bfq 1592611249.00057.2.bfq 2> /dev/null
# Tue Nov 29 02:37:41 GMT 2011: Mapping file(s) 1592611249.00058.1.bfq 1592611249.00058.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00058.unmapped -H 1592611249.00058.mismatch \
	1592611249.00058.map /data/maqgene/genomes/elegans.bfa 1592611249.00058.1.bfq 1592611249.00058.2.bfq 2> /dev/null
# Tue Nov 29 02:44:58 GMT 2011: Mapping file(s) 1592611249.00059.1.bfq 1592611249.00059.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00059.unmapped -H 1592611249.00059.mismatch \
	1592611249.00059.map /data/maqgene/genomes/elegans.bfa 1592611249.00059.1.bfq 1592611249.00059.2.bfq 2> /dev/null
# Tue Nov 29 02:51:50 GMT 2011: Mapping file(s) 1592611249.00060.1.bfq 1592611249.00060.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00060.unmapped -H 1592611249.00060.mismatch \
	1592611249.00060.map /data/maqgene/genomes/elegans.bfa 1592611249.00060.1.bfq 1592611249.00060.2.bfq 2> /dev/null
# Tue Nov 29 02:58:59 GMT 2011: Mapping file(s) 1592611249.00061.1.bfq 1592611249.00061.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00061.unmapped -H 1592611249.00061.mismatch \
	1592611249.00061.map /data/maqgene/genomes/elegans.bfa 1592611249.00061.1.bfq 1592611249.00061.2.bfq 2> /dev/null
# Tue Nov 29 03:06:09 GMT 2011: Mapping file(s) 1592611249.00062.1.bfq 1592611249.00062.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00062.unmapped -H 1592611249.00062.mismatch \
	1592611249.00062.map /data/maqgene/genomes/elegans.bfa 1592611249.00062.1.bfq 1592611249.00062.2.bfq 2> /dev/null
# Tue Nov 29 03:13:01 GMT 2011: Mapping file(s) 1592611249.00063.1.bfq 1592611249.00063.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00063.unmapped -H 1592611249.00063.mismatch \
	1592611249.00063.map /data/maqgene/genomes/elegans.bfa 1592611249.00063.1.bfq 1592611249.00063.2.bfq 2> /dev/null
# Tue Nov 29 03:19:58 GMT 2011: Mapping file(s) 1592611249.00064.1.bfq 1592611249.00064.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00064.unmapped -H 1592611249.00064.mismatch \
	1592611249.00064.map /data/maqgene/genomes/elegans.bfa 1592611249.00064.1.bfq 1592611249.00064.2.bfq 2> /dev/null
# Tue Nov 29 03:26:36 GMT 2011: Mapping file(s) 1592611249.00065.1.bfq 1592611249.00065.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00065.unmapped -H 1592611249.00065.mismatch \
	1592611249.00065.map /data/maqgene/genomes/elegans.bfa 1592611249.00065.1.bfq 1592611249.00065.2.bfq 2> /dev/null
# Tue Nov 29 03:33:09 GMT 2011: Mapping file(s) 1592611249.00066.1.bfq 1592611249.00066.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00066.unmapped -H 1592611249.00066.mismatch \
	1592611249.00066.map /data/maqgene/genomes/elegans.bfa 1592611249.00066.1.bfq 1592611249.00066.2.bfq 2> /dev/null
# Tue Nov 29 03:39:54 GMT 2011: Mapping file(s) 1592611249.00067.1.bfq 1592611249.00067.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00067.unmapped -H 1592611249.00067.mismatch \
	1592611249.00067.map /data/maqgene/genomes/elegans.bfa 1592611249.00067.1.bfq 1592611249.00067.2.bfq 2> /dev/null
# Tue Nov 29 03:46:43 GMT 2011: Mapping file(s) 1592611249.00068.1.bfq 1592611249.00068.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00068.unmapped -H 1592611249.00068.mismatch \
	1592611249.00068.map /data/maqgene/genomes/elegans.bfa 1592611249.00068.1.bfq 1592611249.00068.2.bfq 2> /dev/null
# Tue Nov 29 03:53:34 GMT 2011: Mapping file(s) 1592611249.00069.1.bfq 1592611249.00069.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00069.unmapped -H 1592611249.00069.mismatch \
	1592611249.00069.map /data/maqgene/genomes/elegans.bfa 1592611249.00069.1.bfq 1592611249.00069.2.bfq 2> /dev/null
# Tue Nov 29 04:00:19 GMT 2011: Mapping file(s) 1592611249.00070.1.bfq 1592611249.00070.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00070.unmapped -H 1592611249.00070.mismatch \
	1592611249.00070.map /data/maqgene/genomes/elegans.bfa 1592611249.00070.1.bfq 1592611249.00070.2.bfq 2> /dev/null
# Tue Nov 29 04:07:18 GMT 2011: Mapping file(s) 1592611249.00071.1.bfq 1592611249.00071.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00071.unmapped -H 1592611249.00071.mismatch \
	1592611249.00071.map /data/maqgene/genomes/elegans.bfa 1592611249.00071.1.bfq 1592611249.00071.2.bfq 2> /dev/null
# Tue Nov 29 04:14:35 GMT 2011: Mapping file(s) 1592611249.00072.1.bfq 1592611249.00072.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00072.unmapped -H 1592611249.00072.mismatch \
	1592611249.00072.map /data/maqgene/genomes/elegans.bfa 1592611249.00072.1.bfq 1592611249.00072.2.bfq 2> /dev/null
# Tue Nov 29 04:21:58 GMT 2011: Mapping file(s) 1592611249.00073.1.bfq 1592611249.00073.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00073.unmapped -H 1592611249.00073.mismatch \
	1592611249.00073.map /data/maqgene/genomes/elegans.bfa 1592611249.00073.1.bfq 1592611249.00073.2.bfq 2> /dev/null
# Tue Nov 29 04:29:23 GMT 2011: Mapping file(s) 1592611249.00074.1.bfq 1592611249.00074.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00074.unmapped -H 1592611249.00074.mismatch \
	1592611249.00074.map /data/maqgene/genomes/elegans.bfa 1592611249.00074.1.bfq 1592611249.00074.2.bfq 2> /dev/null
# Tue Nov 29 04:37:01 GMT 2011: Mapping file(s) 1592611249.00075.1.bfq 1592611249.00075.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00075.unmapped -H 1592611249.00075.mismatch \
	1592611249.00075.map /data/maqgene/genomes/elegans.bfa 1592611249.00075.1.bfq 1592611249.00075.2.bfq 2> /dev/null
# Tue Nov 29 04:44:31 GMT 2011: Mapping file(s) 1592611249.00076.1.bfq 1592611249.00076.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00076.unmapped -H 1592611249.00076.mismatch \
	1592611249.00076.map /data/maqgene/genomes/elegans.bfa 1592611249.00076.1.bfq 1592611249.00076.2.bfq 2> /dev/null
# Tue Nov 29 04:51:56 GMT 2011: Mapping file(s) 1592611249.00077.1.bfq 1592611249.00077.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00077.unmapped -H 1592611249.00077.mismatch \
	1592611249.00077.map /data/maqgene/genomes/elegans.bfa 1592611249.00077.1.bfq 1592611249.00077.2.bfq 2> /dev/null
# Tue Nov 29 04:59:19 GMT 2011: Mapping file(s) 1592611249.00078.1.bfq 1592611249.00078.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00078.unmapped -H 1592611249.00078.mismatch \
	1592611249.00078.map /data/maqgene/genomes/elegans.bfa 1592611249.00078.1.bfq 1592611249.00078.2.bfq 2> /dev/null
# Tue Nov 29 05:06:39 GMT 2011: Mapping file(s) 1592611249.00079.1.bfq 1592611249.00079.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00079.unmapped -H 1592611249.00079.mismatch \
	1592611249.00079.map /data/maqgene/genomes/elegans.bfa 1592611249.00079.1.bfq 1592611249.00079.2.bfq 2> /dev/null
# Tue Nov 29 05:14:01 GMT 2011: Mapping file(s) 1592611249.00080.1.bfq 1592611249.00080.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00080.unmapped -H 1592611249.00080.mismatch \
	1592611249.00080.map /data/maqgene/genomes/elegans.bfa 1592611249.00080.1.bfq 1592611249.00080.2.bfq 2> /dev/null
# Tue Nov 29 05:21:16 GMT 2011: Mapping file(s) 1592611249.00081.1.bfq 1592611249.00081.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00081.unmapped -H 1592611249.00081.mismatch \
	1592611249.00081.map /data/maqgene/genomes/elegans.bfa 1592611249.00081.1.bfq 1592611249.00081.2.bfq 2> /dev/null
# Tue Nov 29 05:28:28 GMT 2011: Mapping file(s) 1592611249.00082.1.bfq 1592611249.00082.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00082.unmapped -H 1592611249.00082.mismatch \
	1592611249.00082.map /data/maqgene/genomes/elegans.bfa 1592611249.00082.1.bfq 1592611249.00082.2.bfq 2> /dev/null
# Tue Nov 29 05:35:42 GMT 2011: Mapping file(s) 1592611249.00083.1.bfq 1592611249.00083.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00083.unmapped -H 1592611249.00083.mismatch \
	1592611249.00083.map /data/maqgene/genomes/elegans.bfa 1592611249.00083.1.bfq 1592611249.00083.2.bfq 2> /dev/null
# Tue Nov 29 05:42:51 GMT 2011: Mapping file(s) 1592611249.00084.1.bfq 1592611249.00084.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00084.unmapped -H 1592611249.00084.mismatch \
	1592611249.00084.map /data/maqgene/genomes/elegans.bfa 1592611249.00084.1.bfq 1592611249.00084.2.bfq 2> /dev/null
# Tue Nov 29 05:49:53 GMT 2011: Mapping file(s) 1592611249.00085.1.bfq 1592611249.00085.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00085.unmapped -H 1592611249.00085.mismatch \
	1592611249.00085.map /data/maqgene/genomes/elegans.bfa 1592611249.00085.1.bfq 1592611249.00085.2.bfq 2> /dev/null
# Tue Nov 29 05:56:55 GMT 2011: Mapping file(s) 1592611249.00086.1.bfq 1592611249.00086.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00086.unmapped -H 1592611249.00086.mismatch \
	1592611249.00086.map /data/maqgene/genomes/elegans.bfa 1592611249.00086.1.bfq 1592611249.00086.2.bfq 2> /dev/null
# Tue Nov 29 06:04:04 GMT 2011: Mapping file(s) 1592611249.00087.1.bfq 1592611249.00087.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00087.unmapped -H 1592611249.00087.mismatch \
	1592611249.00087.map /data/maqgene/genomes/elegans.bfa 1592611249.00087.1.bfq 1592611249.00087.2.bfq 2> /dev/null
# Tue Nov 29 06:11:16 GMT 2011: Mapping file(s) 1592611249.00088.1.bfq 1592611249.00088.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00088.unmapped -H 1592611249.00088.mismatch \
	1592611249.00088.map /data/maqgene/genomes/elegans.bfa 1592611249.00088.1.bfq 1592611249.00088.2.bfq 2> /dev/null
# Tue Nov 29 06:18:23 GMT 2011: Mapping file(s) 1592611249.00089.1.bfq 1592611249.00089.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00089.unmapped -H 1592611249.00089.mismatch \
	1592611249.00089.map /data/maqgene/genomes/elegans.bfa 1592611249.00089.1.bfq 1592611249.00089.2.bfq 2> /dev/null
# Tue Nov 29 06:25:30 GMT 2011: Mapping file(s) 1592611249.00090.1.bfq 1592611249.00090.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00090.unmapped -H 1592611249.00090.mismatch \
	1592611249.00090.map /data/maqgene/genomes/elegans.bfa 1592611249.00090.1.bfq 1592611249.00090.2.bfq 2> /dev/null
# Tue Nov 29 06:32:40 GMT 2011: Mapping file(s) 1592611249.00091.1.bfq 1592611249.00091.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00091.unmapped -H 1592611249.00091.mismatch \
	1592611249.00091.map /data/maqgene/genomes/elegans.bfa 1592611249.00091.1.bfq 1592611249.00091.2.bfq 2> /dev/null
# Tue Nov 29 06:39:56 GMT 2011: Mapping file(s) 1592611249.00092.1.bfq 1592611249.00092.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00092.unmapped -H 1592611249.00092.mismatch \
	1592611249.00092.map /data/maqgene/genomes/elegans.bfa 1592611249.00092.1.bfq 1592611249.00092.2.bfq 2> /dev/null
# Tue Nov 29 06:47:06 GMT 2011: Mapping file(s) 1592611249.00093.1.bfq 1592611249.00093.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00093.unmapped -H 1592611249.00093.mismatch \
	1592611249.00093.map /data/maqgene/genomes/elegans.bfa 1592611249.00093.1.bfq 1592611249.00093.2.bfq 2> /dev/null
# Tue Nov 29 06:54:16 GMT 2011: Mapping file(s) 1592611249.00094.1.bfq 1592611249.00094.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00094.unmapped -H 1592611249.00094.mismatch \
	1592611249.00094.map /data/maqgene/genomes/elegans.bfa 1592611249.00094.1.bfq 1592611249.00094.2.bfq 2> /dev/null
# Tue Nov 29 07:01:26 GMT 2011: Mapping file(s) 1592611249.00095.1.bfq 1592611249.00095.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00095.unmapped -H 1592611249.00095.mismatch \
	1592611249.00095.map /data/maqgene/genomes/elegans.bfa 1592611249.00095.1.bfq 1592611249.00095.2.bfq 2> /dev/null
# Tue Nov 29 07:08:47 GMT 2011: Mapping file(s) 1592611249.00096.1.bfq 1592611249.00096.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00096.unmapped -H 1592611249.00096.mismatch \
	1592611249.00096.map /data/maqgene/genomes/elegans.bfa 1592611249.00096.1.bfq 1592611249.00096.2.bfq 2> /dev/null
# Tue Nov 29 07:16:06 GMT 2011: Mapping file(s) 1592611249.00097.1.bfq 1592611249.00097.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00097.unmapped -H 1592611249.00097.mismatch \
	1592611249.00097.map /data/maqgene/genomes/elegans.bfa 1592611249.00097.1.bfq 1592611249.00097.2.bfq 2> /dev/null
# Tue Nov 29 07:22:44 GMT 2011: Mapping file(s) 1592611249.00098.1.bfq 1592611249.00098.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00098.unmapped -H 1592611249.00098.mismatch \
	1592611249.00098.map /data/maqgene/genomes/elegans.bfa 1592611249.00098.1.bfq 1592611249.00098.2.bfq 2> /dev/null
# Tue Nov 29 07:29:22 GMT 2011: Mapping file(s) 1592611249.00099.1.bfq 1592611249.00099.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00099.unmapped -H 1592611249.00099.mismatch \
	1592611249.00099.map /data/maqgene/genomes/elegans.bfa 1592611249.00099.1.bfq 1592611249.00099.2.bfq 2> /dev/null
# Tue Nov 29 07:33:35 GMT 2011: Mapping file(s) 1592611249.00100.1.bfq 1592611249.00100.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00100.unmapped -H 1592611249.00100.mismatch \
	1592611249.00100.map /data/maqgene/genomes/elegans.bfa 1592611249.00100.1.bfq 1592611249.00100.2.bfq 2> /dev/null
# Tue Nov 29 07:33:36 GMT 2011: Mapping file(s) 1592611249.00022.1.bfq 1592611249.00022.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00022.unmapped -H 1592611249.00022.mismatch \
	1592611249.00022.map /data/maqgene/genomes/elegans.bfa 1592611249.00022.1.bfq 1592611249.00022.2.bfq 2> /dev/null
# Tue Nov 29 07:33:37 GMT 2011: Mapping file(s) 1592611249.00021.1.bfq 1592611249.00021.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00021.unmapped -H 1592611249.00021.mismatch \
	1592611249.00021.map /data/maqgene/genomes/elegans.bfa 1592611249.00021.1.bfq 1592611249.00021.2.bfq 2> /dev/null
# Tue Nov 29 07:33:38 GMT 2011: Mapping file(s) 1592611249.00020.1.bfq 1592611249.00020.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00020.unmapped -H 1592611249.00020.mismatch \
	1592611249.00020.map /data/maqgene/genomes/elegans.bfa 1592611249.00020.1.bfq 1592611249.00020.2.bfq 2> /dev/null
# Tue Nov 29 07:33:39 GMT 2011: Mapping file(s) 1592611249.00019.1.bfq 1592611249.00019.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00019.unmapped -H 1592611249.00019.mismatch \
	1592611249.00019.map /data/maqgene/genomes/elegans.bfa 1592611249.00019.1.bfq 1592611249.00019.2.bfq 2> /dev/null
# Tue Nov 29 07:33:40 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00008.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00008.1.bfq
-- finish writing file '1592611249.00008.1.bfq'
-- 1250000 sequences were loaded.
# Tue Nov 29 07:40:59 GMT 2011: Mapping file(s) 1592611249.00106.1.bfq 1592611249.00106.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00106.unmapped -H 1592611249.00106.mismatch \
	1592611249.00106.map /data/maqgene/genomes/elegans.bfa 1592611249.00106.1.bfq 1592611249.00106.2.bfq 2> /dev/null
# Tue Nov 29 07:41:37 GMT 2011: Mapping file(s) 1592611249.00107.1.bfq 1592611249.00107.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00107.unmapped -H 1592611249.00107.mismatch \
	1592611249.00107.map /data/maqgene/genomes/elegans.bfa 1592611249.00107.1.bfq 1592611249.00107.2.bfq 2> /dev/null
# Tue Nov 29 07:41:39 GMT 2011: Mapping file(s) 1592611249.00105.1.bfq 1592611249.00105.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00105.unmapped -H 1592611249.00105.mismatch \
	1592611249.00105.map /data/maqgene/genomes/elegans.bfa 1592611249.00105.1.bfq 1592611249.00105.2.bfq 2> /dev/null
# Tue Nov 29 07:41:41 GMT 2011: Mapping file(s) 1592611249.00104.1.bfq 1592611249.00104.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00104.unmapped -H 1592611249.00104.mismatch \
	1592611249.00104.map /data/maqgene/genomes/elegans.bfa 1592611249.00104.1.bfq 1592611249.00104.2.bfq 2> /dev/null
# Tue Nov 29 07:47:57 GMT 2011: Mapping file(s) 1592611249.00109.1.bfq 1592611249.00109.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00109.unmapped -H 1592611249.00109.mismatch \
	1592611249.00109.map /data/maqgene/genomes/elegans.bfa 1592611249.00109.1.bfq 1592611249.00109.2.bfq 2> /dev/null
# Tue Nov 29 07:47:59 GMT 2011: Mapping file(s) 1592611249.00108.1.bfq 1592611249.00108.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00108.unmapped -H 1592611249.00108.mismatch \
	1592611249.00108.map /data/maqgene/genomes/elegans.bfa 1592611249.00108.1.bfq 1592611249.00108.2.bfq 2> /dev/null
# Tue Nov 29 07:48:01 GMT 2011: Mapping file(s) 1592611249.00103.1.bfq 1592611249.00103.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00103.unmapped -H 1592611249.00103.mismatch \
	1592611249.00103.map /data/maqgene/genomes/elegans.bfa 1592611249.00103.1.bfq 1592611249.00103.2.bfq 2> /dev/null
# Tue Nov 29 07:48:42 GMT 2011: Mapping file(s) 1592611249.00111.1.bfq 1592611249.00111.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00111.unmapped -H 1592611249.00111.mismatch \
	1592611249.00111.map /data/maqgene/genomes/elegans.bfa 1592611249.00111.1.bfq 1592611249.00111.2.bfq 2> /dev/null
# Tue Nov 29 07:48:44 GMT 2011: Mapping file(s) 1592611249.00110.1.bfq 1592611249.00110.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00110.unmapped -H 1592611249.00110.mismatch \
	1592611249.00110.map /data/maqgene/genomes/elegans.bfa 1592611249.00110.1.bfq 1592611249.00110.2.bfq 2> /dev/null
# Tue Nov 29 07:48:46 GMT 2011: Mapping file(s) 1592611249.00102.1.bfq 1592611249.00102.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00102.unmapped -H 1592611249.00102.mismatch \
	1592611249.00102.map /data/maqgene/genomes/elegans.bfa 1592611249.00102.1.bfq 1592611249.00102.2.bfq 2> /dev/null
# Tue Nov 29 07:54:18 GMT 2011: Mapping file(s) 1592611249.00116.1.bfq 1592611249.00116.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00116.unmapped -H 1592611249.00116.mismatch \
	1592611249.00116.map /data/maqgene/genomes/elegans.bfa 1592611249.00116.1.bfq 1592611249.00116.2.bfq 2> /dev/null
# Tue Nov 29 07:54:19 GMT 2011: Mapping file(s) 1592611249.00115.1.bfq 1592611249.00115.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00115.unmapped -H 1592611249.00115.mismatch \
	1592611249.00115.map /data/maqgene/genomes/elegans.bfa 1592611249.00115.1.bfq 1592611249.00115.2.bfq 2> /dev/null
# Tue Nov 29 07:54:20 GMT 2011: Mapping file(s) 1592611249.00114.1.bfq 1592611249.00114.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00114.unmapped -H 1592611249.00114.mismatch \
	1592611249.00114.map /data/maqgene/genomes/elegans.bfa 1592611249.00114.1.bfq 1592611249.00114.2.bfq 2> /dev/null
# Tue Nov 29 07:54:21 GMT 2011: Mapping file(s) 1592611249.00113.1.bfq 1592611249.00113.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00113.unmapped -H 1592611249.00113.mismatch \
	1592611249.00113.map /data/maqgene/genomes/elegans.bfa 1592611249.00113.1.bfq 1592611249.00113.2.bfq 2> /dev/null
# Tue Nov 29 07:54:22 GMT 2011: Mapping file(s) 1592611249.00112.1.bfq 1592611249.00112.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00112.unmapped -H 1592611249.00112.mismatch \
	1592611249.00112.map /data/maqgene/genomes/elegans.bfa 1592611249.00112.1.bfq 1592611249.00112.2.bfq 2> /dev/null
# Tue Nov 29 07:54:23 GMT 2011: Mapping file(s) 1592611249.00101.1.bfq 1592611249.00101.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00101.unmapped -H 1592611249.00101.mismatch \
	1592611249.00101.map /data/maqgene/genomes/elegans.bfa 1592611249.00101.1.bfq 1592611249.00101.2.bfq 2> /dev/null
# Tue Nov 29 07:54:24 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00007.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00007.1.bfq
# Tue Nov 29 07:54:25 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00006.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00006.1.bfq
# Tue Nov 29 07:54:26 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00005.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00005.1.bfq
# Tue Nov 29 07:54:27 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq sol2sanger 1592611249.00004.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00004.1.bfq
-- finish writing file '1592611249.00007.1.bfq'
-- 1250000 sequences were loaded.
-- finish writing file '1592611249.00004.1.bfq'
-- 1250000 sequences were loaded.
-- finish writing file '1592611249.00006.1.bfq'
-- 1250000 sequences were loaded.
-- finish writing file '1592611249.00005.1.bfq'
-- 1250000 sequences were loaded.
# Tue Nov 29 08:00:39 GMT 2011: Mapping file(s) 1592611249.00124.1.bfq 1592611249.00124.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00124.unmapped -H 1592611249.00124.mismatch \
	1592611249.00124.map /data/maqgene/genomes/elegans.bfa 1592611249.00124.1.bfq 1592611249.00124.2.bfq 2> /dev/null
# Tue Nov 29 08:00:40 GMT 2011: Mapping file(s) 1592611249.00123.1.bfq 1592611249.00123.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00123.unmapped -H 1592611249.00123.mismatch \
	1592611249.00123.map /data/maqgene/genomes/elegans.bfa 1592611249.00123.1.bfq 1592611249.00123.2.bfq 2> /dev/null
# Tue Nov 29 08:00:41 GMT 2011: Mapping file(s) 1592611249.00122.1.bfq 1592611249.00122.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00122.unmapped -H 1592611249.00122.mismatch \
	1592611249.00122.map /data/maqgene/genomes/elegans.bfa 1592611249.00122.1.bfq 1592611249.00122.2.bfq 2> /dev/null
# Tue Nov 29 08:00:42 GMT 2011: Mapping file(s) 1592611249.00121.1.bfq 1592611249.00121.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00121.unmapped -H 1592611249.00121.mismatch \
	1592611249.00121.map /data/maqgene/genomes/elegans.bfa 1592611249.00121.1.bfq 1592611249.00121.2.bfq 2> /dev/null
# Tue Nov 29 08:00:43 GMT 2011: Mapping file(s) 1592611249.00120.1.bfq 1592611249.00120.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00120.unmapped -H 1592611249.00120.mismatch \
	1592611249.00120.map /data/maqgene/genomes/elegans.bfa 1592611249.00120.1.bfq 1592611249.00120.2.bfq 2> /dev/null
# Tue Nov 29 08:01:19 GMT 2011: Mapping file(s) 1592611249.00127.1.bfq 1592611249.00127.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00127.unmapped -H 1592611249.00127.mismatch \
	1592611249.00127.map /data/maqgene/genomes/elegans.bfa 1592611249.00127.1.bfq 1592611249.00127.2.bfq 2> /dev/null
# Tue Nov 29 08:01:20 GMT 2011: Mapping file(s) 1592611249.00126.1.bfq 1592611249.00126.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00126.unmapped -H 1592611249.00126.mismatch \
	1592611249.00126.map /data/maqgene/genomes/elegans.bfa 1592611249.00126.1.bfq 1592611249.00126.2.bfq 2> /dev/null
# Tue Nov 29 08:01:21 GMT 2011: Mapping file(s) 1592611249.00125.1.bfq 1592611249.00125.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00125.unmapped -H 1592611249.00125.mismatch \
	1592611249.00125.map /data/maqgene/genomes/elegans.bfa 1592611249.00125.1.bfq 1592611249.00125.2.bfq 2> /dev/null
# Tue Nov 29 08:01:22 GMT 2011: Mapping file(s) 1592611249.00119.1.bfq 1592611249.00119.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00119.unmapped -H 1592611249.00119.mismatch \
	1592611249.00119.map /data/maqgene/genomes/elegans.bfa 1592611249.00119.1.bfq 1592611249.00119.2.bfq 2> /dev/null
# Tue Nov 29 08:01:23 GMT 2011: Mapping file(s) 1592611249.00118.1.bfq 1592611249.00118.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00118.unmapped -H 1592611249.00118.mismatch \
	1592611249.00118.map /data/maqgene/genomes/elegans.bfa 1592611249.00118.1.bfq 1592611249.00118.2.bfq 2> /dev/null
# Tue Nov 29 08:08:54 GMT 2011: Mapping file(s) 1592611249.00134.1.bfq 1592611249.00134.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00134.unmapped -H 1592611249.00134.mismatch \
	1592611249.00134.map /data/maqgene/genomes/elegans.bfa 1592611249.00134.1.bfq 1592611249.00134.2.bfq 2> /dev/null
# Tue Nov 29 08:08:55 GMT 2011: Mapping file(s) 1592611249.00133.1.bfq 1592611249.00133.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00133.unmapped -H 1592611249.00133.mismatch \
	1592611249.00133.map /data/maqgene/genomes/elegans.bfa 1592611249.00133.1.bfq 1592611249.00133.2.bfq 2> /dev/null
# Tue Nov 29 08:08:56 GMT 2011: Mapping file(s) 1592611249.00132.1.bfq 1592611249.00132.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00132.unmapped -H 1592611249.00132.mismatch \
	1592611249.00132.map /data/maqgene/genomes/elegans.bfa 1592611249.00132.1.bfq 1592611249.00132.2.bfq 2> /dev/null
# Tue Nov 29 08:08:57 GMT 2011: Mapping file(s) 1592611249.00131.1.bfq 1592611249.00131.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00131.unmapped -H 1592611249.00131.mismatch \
	1592611249.00131.map /data/maqgene/genomes/elegans.bfa 1592611249.00131.1.bfq 1592611249.00131.2.bfq 2> /dev/null
# Tue Nov 29 08:08:58 GMT 2011: Mapping file(s) 1592611249.00130.1.bfq 1592611249.00130.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00130.unmapped -H 1592611249.00130.mismatch \
	1592611249.00130.map /data/maqgene/genomes/elegans.bfa 1592611249.00130.1.bfq 1592611249.00130.2.bfq 2> /dev/null
# Tue Nov 29 08:09:45 GMT 2011: Mapping file(s) 1592611249.00137.1.bfq 1592611249.00137.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00137.unmapped -H 1592611249.00137.mismatch \
	1592611249.00137.map /data/maqgene/genomes/elegans.bfa 1592611249.00137.1.bfq 1592611249.00137.2.bfq 2> /dev/null
# Tue Nov 29 08:09:47 GMT 2011: Mapping file(s) 1592611249.00136.1.bfq 1592611249.00136.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00136.unmapped -H 1592611249.00136.mismatch \
	1592611249.00136.map /data/maqgene/genomes/elegans.bfa 1592611249.00136.1.bfq 1592611249.00136.2.bfq 2> /dev/null
# Tue Nov 29 08:09:49 GMT 2011: Mapping file(s) 1592611249.00135.1.bfq 1592611249.00135.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00135.unmapped -H 1592611249.00135.mismatch \
	1592611249.00135.map /data/maqgene/genomes/elegans.bfa 1592611249.00135.1.bfq 1592611249.00135.2.bfq 2> /dev/null
# Tue Nov 29 08:16:26 GMT 2011: Mapping file(s) 1592611249.00144.1.bfq 1592611249.00144.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00144.unmapped -H 1592611249.00144.mismatch \
	1592611249.00144.map /data/maqgene/genomes/elegans.bfa 1592611249.00144.1.bfq 1592611249.00144.2.bfq 2> /dev/null
# Tue Nov 29 08:16:27 GMT 2011: Mapping file(s) 1592611249.00143.1.bfq 1592611249.00143.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00143.unmapped -H 1592611249.00143.mismatch \
	1592611249.00143.map /data/maqgene/genomes/elegans.bfa 1592611249.00143.1.bfq 1592611249.00143.2.bfq 2> /dev/null
# Tue Nov 29 08:16:28 GMT 2011: Mapping file(s) 1592611249.00142.1.bfq 1592611249.00142.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00142.unmapped -H 1592611249.00142.mismatch \
	1592611249.00142.map /data/maqgene/genomes/elegans.bfa 1592611249.00142.1.bfq 1592611249.00142.2.bfq 2> /dev/null
# Tue Nov 29 08:16:29 GMT 2011: Mapping file(s) 1592611249.00141.1.bfq 1592611249.00141.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00141.unmapped -H 1592611249.00141.mismatch \
	1592611249.00141.map /data/maqgene/genomes/elegans.bfa 1592611249.00141.1.bfq 1592611249.00141.2.bfq 2> /dev/null
# Tue Nov 29 08:16:30 GMT 2011: Mapping file(s) 1592611249.00140.1.bfq 1592611249.00140.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00140.unmapped -H 1592611249.00140.mismatch \
	1592611249.00140.map /data/maqgene/genomes/elegans.bfa 1592611249.00140.1.bfq 1592611249.00140.2.bfq 2> /dev/null
# Tue Nov 29 08:16:31 GMT 2011: Mapping file(s) 1592611249.00139.1.bfq 1592611249.00139.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00139.unmapped -H 1592611249.00139.mismatch \
	1592611249.00139.map /data/maqgene/genomes/elegans.bfa 1592611249.00139.1.bfq 1592611249.00139.2.bfq 2> /dev/null
# Tue Nov 29 08:16:32 GMT 2011: Mapping file(s) 1592611249.00138.1.bfq 1592611249.00138.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00138.unmapped -H 1592611249.00138.mismatch \
	1592611249.00138.map /data/maqgene/genomes/elegans.bfa 1592611249.00138.1.bfq 1592611249.00138.2.bfq 2> /dev/null
# Tue Nov 29 08:16:33 GMT 2011: Mapping file(s) 1592611249.00129.1.bfq 1592611249.00129.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00129.unmapped -H 1592611249.00129.mismatch \
	1592611249.00129.map /data/maqgene/genomes/elegans.bfa 1592611249.00129.1.bfq 1592611249.00129.2.bfq 2> /dev/null
# Tue Nov 29 08:16:34 GMT 2011: Mapping file(s) 1592611249.00128.1.bfq 1592611249.00128.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00128.unmapped -H 1592611249.00128.mismatch \
	1592611249.00128.map /data/maqgene/genomes/elegans.bfa 1592611249.00128.1.bfq 1592611249.00128.2.bfq 2> /dev/null
# Tue Nov 29 08:16:35 GMT 2011: Mapping file(s) 1592611249.00117.1.bfq 1592611249.00117.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00117.unmapped -H 1592611249.00117.mismatch \
	1592611249.00117.map /data/maqgene/genomes/elegans.bfa 1592611249.00117.1.bfq 1592611249.00117.2.bfq 2> /dev/null
# Tue Nov 29 08:24:07 GMT 2011: Mapping file(s) 1592611249.00153.1.bfq 1592611249.00153.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00153.unmapped -H 1592611249.00153.mismatch \
	1592611249.00153.map /data/maqgene/genomes/elegans.bfa 1592611249.00153.1.bfq 1592611249.00153.2.bfq 2> /dev/null
# Tue Nov 29 08:24:07 GMT 2011: Mapping file(s) 1592611249.00152.1.bfq 1592611249.00152.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00152.unmapped -H 1592611249.00152.mismatch \
	1592611249.00152.map /data/maqgene/genomes/elegans.bfa 1592611249.00152.1.bfq 1592611249.00152.2.bfq 2> /dev/null
# Tue Nov 29 08:24:08 GMT 2011: Mapping file(s) 1592611249.00154.1.bfq 1592611249.00154.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00154.unmapped -H 1592611249.00154.mismatch \
	1592611249.00154.map /data/maqgene/genomes/elegans.bfa 1592611249.00154.1.bfq 1592611249.00154.2.bfq 2> /dev/null
# Tue Nov 29 08:24:09 GMT 2011: Mapping file(s) 1592611249.00151.1.bfq 1592611249.00151.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00151.unmapped -H 1592611249.00151.mismatch \
	1592611249.00151.map /data/maqgene/genomes/elegans.bfa 1592611249.00151.1.bfq 1592611249.00151.2.bfq 2> /dev/null
# Tue Nov 29 08:24:10 GMT 2011: Mapping file(s) 1592611249.00150.1.bfq 1592611249.00150.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00150.unmapped -H 1592611249.00150.mismatch \
	1592611249.00150.map /data/maqgene/genomes/elegans.bfa 1592611249.00150.1.bfq 1592611249.00150.2.bfq 2> /dev/null
# Tue Nov 29 08:24:11 GMT 2011: Mapping file(s) 1592611249.00149.1.bfq 1592611249.00149.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00149.unmapped -H 1592611249.00149.mismatch \
	1592611249.00149.map /data/maqgene/genomes/elegans.bfa 1592611249.00149.1.bfq 1592611249.00149.2.bfq 2> /dev/null
# Tue Nov 29 08:24:12 GMT 2011: Mapping file(s) 1592611249.00148.1.bfq 1592611249.00148.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00148.unmapped -H 1592611249.00148.mismatch \
	1592611249.00148.map /data/maqgene/genomes/elegans.bfa 1592611249.00148.1.bfq 1592611249.00148.2.bfq 2> /dev/null
# Tue Nov 29 08:24:13 GMT 2011: Mapping file(s) 1592611249.00147.1.bfq 1592611249.00147.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00147.unmapped -H 1592611249.00147.mismatch \
	1592611249.00147.map /data/maqgene/genomes/elegans.bfa 1592611249.00147.1.bfq 1592611249.00147.2.bfq 2> /dev/null
# Tue Nov 29 08:24:14 GMT 2011: Mapping file(s) 1592611249.00146.1.bfq 1592611249.00146.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00146.unmapped -H 1592611249.00146.mismatch \
	1592611249.00146.map /data/maqgene/genomes/elegans.bfa 1592611249.00146.1.bfq 1592611249.00146.2.bfq 2> /dev/null
# Tue Nov 29 08:24:15 GMT 2011: Mapping file(s) 1592611249.00145.1.bfq 1592611249.00145.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00145.unmapped -H 1592611249.00145.mismatch \
	1592611249.00145.map /data/maqgene/genomes/elegans.bfa 1592611249.00145.1.bfq 1592611249.00145.2.bfq 2> /dev/null
# Tue Nov 29 08:30:53 GMT 2011: Mapping file(s) 1592611249.00008.1.bfq 1592611249.00008.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00008.unmapped -H 1592611249.00008.mismatch \
	1592611249.00008.map /data/maqgene/genomes/elegans.bfa 1592611249.00008.1.bfq 1592611249.00008.2.bfq 2> /dev/null
# Tue Nov 29 08:30:57 GMT 2011: Mapping file(s) 1592611249.00007.1.bfq 1592611249.00007.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00007.unmapped -H 1592611249.00007.mismatch \
	1592611249.00007.map /data/maqgene/genomes/elegans.bfa 1592611249.00007.1.bfq 1592611249.00007.2.bfq 2> /dev/null
# Tue Nov 29 08:30:57 GMT 2011: Mapping file(s) 1592611249.00009.1.bfq 1592611249.00009.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00009.unmapped -H 1592611249.00009.mismatch \
	1592611249.00009.map /data/maqgene/genomes/elegans.bfa 1592611249.00009.1.bfq 1592611249.00009.2.bfq 2> /dev/null
# Tue Nov 29 08:30:58 GMT 2011: Mapping file(s) 1592611249.00005.1.bfq 1592611249.00005.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00005.unmapped -H 1592611249.00005.mismatch \
	1592611249.00005.map /data/maqgene/genomes/elegans.bfa 1592611249.00005.1.bfq 1592611249.00005.2.bfq 2> /dev/null
# Tue Nov 29 08:30:58 GMT 2011: Mapping file(s) 1592611249.00006.1.bfq 1592611249.00006.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00006.unmapped -H 1592611249.00006.mismatch \
	1592611249.00006.map /data/maqgene/genomes/elegans.bfa 1592611249.00006.1.bfq 1592611249.00006.2.bfq 2> /dev/null
# Tue Nov 29 08:30:59 GMT 2011: Mapping file(s) 1592611249.00004.1.bfq 1592611249.00004.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00004.unmapped -H 1592611249.00004.mismatch \
	1592611249.00004.map /data/maqgene/genomes/elegans.bfa 1592611249.00004.1.bfq 1592611249.00004.2.bfq 2> /dev/null
# Tue Nov 29 08:30:59 GMT 2011: Mapping file(s) 1592611249.00159.1.bfq 1592611249.00159.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00159.unmapped -H 1592611249.00159.mismatch \
	1592611249.00159.map /data/maqgene/genomes/elegans.bfa 1592611249.00159.1.bfq 1592611249.00159.2.bfq 2> /dev/null
# Tue Nov 29 08:31:00 GMT 2011: Mapping file(s) 1592611249.00157.1.bfq 1592611249.00157.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00157.unmapped -H 1592611249.00157.mismatch \
	1592611249.00157.map /data/maqgene/genomes/elegans.bfa 1592611249.00157.1.bfq 1592611249.00157.2.bfq 2> /dev/null
# Tue Nov 29 08:31:00 GMT 2011: Mapping file(s) 1592611249.00158.1.bfq 1592611249.00158.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00158.unmapped -H 1592611249.00158.mismatch \
	1592611249.00158.map /data/maqgene/genomes/elegans.bfa 1592611249.00158.1.bfq 1592611249.00158.2.bfq 2> /dev/null
# Tue Nov 29 08:31:02 GMT 2011: Mapping file(s) 1592611249.00156.1.bfq 1592611249.00156.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00156.unmapped -H 1592611249.00156.mismatch \
	1592611249.00156.map /data/maqgene/genomes/elegans.bfa 1592611249.00156.1.bfq 1592611249.00156.2.bfq 2> /dev/null
# Tue Nov 29 08:31:02 GMT 2011: Converting fastq files to bfq ...
# Tue Nov 29 08:31:02 GMT 2011: Mapping file(s) 1592611249.00155.1.bfq 1592611249.00155.2.bfq
# Tue Nov 29 08:31:02 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00155.unmapped -H 1592611249.00155.mismatch \
	1592611249.00155.map /data/maqgene/genomes/elegans.bfa 1592611249.00155.1.bfq 1592611249.00155.2.bfq 2> /dev/null
/data/maqgene/bin/maq sol2sanger 1592611249.00003.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00003.1.bfq
/data/maqgene/bin/maq sol2sanger 1592611249.00002.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00002.1.bfq
-- finish writing file '1592611249.00003.1.bfq'
-- 1250000 sequences were loaded.
-- finish writing file '1592611249.00002.1.bfq'
-- 1250000 sequences were loaded.
# Tue Nov 29 08:37:59 GMT 2011: Mapping file(s) 1592611249.00002.1.bfq 1592611249.00002.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00002.unmapped -H 1592611249.00002.mismatch \
	1592611249.00002.map /data/maqgene/genomes/elegans.bfa 1592611249.00002.1.bfq 1592611249.00002.2.bfq 2> /dev/null
# Tue Nov 29 08:37:59 GMT 2011: Mapping file(s) 1592611249.00003.1.bfq 1592611249.00003.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00003.unmapped -H 1592611249.00003.mismatch \
	1592611249.00003.map /data/maqgene/genomes/elegans.bfa 1592611249.00003.1.bfq 1592611249.00003.2.bfq 2> /dev/null
# Tue Nov 29 08:42:48 GMT 2011: Mapping file(s) 1592611249.00011.1.bfq 1592611249.00011.2.bfq
# Tue Nov 29 08:42:48 GMT 2011: Mapping file(s) 1592611249.00012.1.bfq 1592611249.00012.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00011.unmapped -H 1592611249.00011.mismatch \
	1592611249.00011.map /data/maqgene/genomes/elegans.bfa 1592611249.00011.1.bfq 1592611249.00011.2.bfq 2> /dev/null
# Tue Nov 29 08:42:48 GMT 2011: Mapping file(s) 1592611249.00010.1.bfq 1592611249.00010.2.bfq
# Tue Nov 29 08:42:48 GMT 2011: Converting fastq files to bfq ...
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00012.unmapped -H 1592611249.00012.mismatch \
	1592611249.00012.map /data/maqgene/genomes/elegans.bfa 1592611249.00012.1.bfq 1592611249.00012.2.bfq 2> /dev/null
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00010.unmapped -H 1592611249.00010.mismatch \
	1592611249.00010.map /data/maqgene/genomes/elegans.bfa 1592611249.00010.1.bfq 1592611249.00010.2.bfq 2> /dev/null
/data/maqgene/bin/maq sol2sanger 1592611249.00001.1.fastq /dev/stdout | \
	/data/maqgene/bin/maq fastq2bfq /dev/stdin 1592611249.00001.1.bfq
-- finish writing file '1592611249.00001.1.bfq'
-- 1250000 sequences were loaded.
# Tue Nov 29 08:43:04 GMT 2011: Mapping file(s) 1592611249.00001.1.bfq 1592611249.00001.2.bfq
/data/maqgene/bin/maq map -m 0.00001 -C 250 -n 2 -2 0 -a 500 -e 100 -A 500 -1 0 -u 1592611249.00001.unmapped -H 1592611249.00001.mismatch \
	1592611249.00001.map /data/maqgene/genomes/elegans.bfa 1592611249.00001.1.bfq 1592611249.00001.2.bfq 2> /dev/null
# Tue Nov 29 08:48:32 GMT 2011: Merging all *.unmapped files ...
# Tue Nov 29 08:48:32 GMT 2011: Merging all maps ...
cat 1592611249.00000.unmapped 1592611249.00001.unmapped 1592611249.00002.unmapped 1592611249.00003.unmapped 1592611249.00004.unmapped 1592611249.00005.unmapped 1592611249.00006.unmapped 1592611249.00007.unmapped 1592611249.00008.unmapped 1592611249.00009.unmapped 1592611249.00010.unmapped 1592611249.00011.unmapped 1592611249.00012.unmapped 1592611249.00013.unmapped 1592611249.00014.unmapped 1592611249.00015.unmapped 1592611249.00016.unmapped 1592611249.00017.unmapped 1592611249.00018.unmapped 1592611249.00019.unmapped 1592611249.00020.unmapped 1592611249.00021.unmapped 1592611249.00022.unmapped 1592611249.00023.unmapped 1592611249.00024.unmapped 1592611249.00025.unmapped 1592611249.00026.unmapped 1592611249.00027.unmapped 1592611249.00028.unmapped 1592611249.00029.unmapped 1592611249.00030.unmapped 1592611249.00031.unmapped 1592611249.00032.unmapped 1592611249.00033.unmapped 1592611249.00034.unmapped 1592611249.00035.unmapped 1592611249.00036.unmapped 1592611249.00037.unmapped 1592611249.00038.unmapped 1592611249.00039.unmapped 1592611249.00040.unmapped 1592611249.00041.unmapped 1592611249.00042.unmapped 1592611249.00043.unmapped 1592611249.00044.unmapped 1592611249.00045.unmapped 1592611249.00046.unmapped 1592611249.00047.unmapped 1592611249.00048.unmapped 1592611249.00049.unmapped 1592611249.00050.unmapped 1592611249.00051.unmapped 1592611249.00052.unmapped 1592611249.00053.unmapped 1592611249.00054.unmapped 1592611249.00055.unmapped 1592611249.00056.unmapped 1592611249.00057.unmapped 1592611249.00058.unmapped 1592611249.00059.unmapped 1592611249.00060.unmapped 1592611249.00061.unmapped 1592611249.00062.unmapped 1592611249.00063.unmapped 1592611249.00064.unmapped 1592611249.00065.unmapped 1592611249.00066.unmapped 1592611249.00067.unmapped 1592611249.00068.unmapped 1592611249.00069.unmapped 1592611249.00070.unmapped 1592611249.00071.unmapped 1592611249.00072.unmapped 1592611249.00073.unmapped 1592611249.00074.unmapped 1592611249.00075.unmapped 1592611249.00076.unmapped 1592611249.00077.unmapped 1592611249.00078.unmapped 1592611249.00079.unmapped 1592611249.00080.unmapped 1592611249.00081.unmapped 1592611249.00082.unmapped 1592611249.00083.unmapped 1592611249.00084.unmapped 1592611249.00085.unmapped 1592611249.00086.unmapped 1592611249.00087.unmapped 1592611249.00088.unmapped 1592611249.00089.unmapped 1592611249.00090.unmapped 1592611249.00091.unmapped 1592611249.00092.unmapped 1592611249.00093.unmapped 1592611249.00094.unmapped 1592611249.00095.unmapped 1592611249.00096.unmapped 1592611249.00097.unmapped 1592611249.00098.unmapped 1592611249.00099.unmapped 1592611249.00100.unmapped 1592611249.00101.unmapped 1592611249.00102.unmapped 1592611249.00103.unmapped 1592611249.00104.unmapped 1592611249.00105.unmapped 1592611249.00106.unmapped 1592611249.00107.unmapped 1592611249.00108.unmapped 1592611249.00109.unmapped 1592611249.00110.unmapped 1592611249.00111.unmapped 1592611249.00112.unmapped 1592611249.00113.unmapped 1592611249.00114.unmapped 1592611249.00115.unmapped 1592611249.00116.unmapped 1592611249.00117.unmapped 1592611249.00118.unmapped 1592611249.00119.unmapped 1592611249.00120.unmapped 1592611249.00121.unmapped 1592611249.00122.unmapped 1592611249.00123.unmapped 1592611249.00124.unmapped 1592611249.00125.unmapped 1592611249.00126.unmapped 1592611249.00127.unmapped 1592611249.00128.unmapped 1592611249.00129.unmapped 1592611249.00130.unmapped 1592611249.00131.unmapped 1592611249.00132.unmapped 1592611249.00133.unmapped 1592611249.00134.unmapped 1592611249.00135.unmapped 1592611249.00136.unmapped 1592611249.00137.unmapped 1592611249.00138.unmapped 1592611249.00139.unmapped 1592611249.00140.unmapped 1592611249.00141.unmapped 1592611249.00142.unmapped 1592611249.00143.unmapped 1592611249.00144.unmapped 1592611249.00145.unmapped 1592611249.00146.unmapped 1592611249.00147.unmapped 1592611249.00148.unmapped 1592611249.00149.unmapped 1592611249.00150.unmapped 1592611249.00151.unmapped 1592611249.00152.unmapped 1592611249.00153.unmapped 1592611249.00154.unmapped 1592611249.00155.unmapped 1592611249.00156.unmapped 1592611249.00157.unmapped 1592611249.00158.unmapped 1592611249.00159.unmapped > 1592611249_unmapped.txt
/data/maqgene/bin/maq mapmerge 1592611249.map 1592611249.00000.map 1592611249.00001.map 1592611249.00002.map 1592611249.00003.map 1592611249.00004.map 1592611249.00005.map 1592611249.00006.map 1592611249.00007.map 1592611249.00008.map 1592611249.00009.map 1592611249.00010.map 1592611249.00011.map 1592611249.00012.map 1592611249.00013.map 1592611249.00014.map 1592611249.00015.map 1592611249.00016.map 1592611249.00017.map 1592611249.00018.map 1592611249.00019.map 1592611249.00020.map 1592611249.00021.map 1592611249.00022.map 1592611249.00023.map 1592611249.00024.map 1592611249.00025.map 1592611249.00026.map 1592611249.00027.map 1592611249.00028.map 1592611249.00029.map 1592611249.00030.map 1592611249.00031.map 1592611249.00032.map 1592611249.00033.map 1592611249.00034.map 1592611249.00035.map 1592611249.00036.map 1592611249.00037.map 1592611249.00038.map 1592611249.00039.map 1592611249.00040.map 1592611249.00041.map 1592611249.00042.map 1592611249.00043.map 1592611249.00044.map 1592611249.00045.map 1592611249.00046.map 1592611249.00047.map 1592611249.00048.map 1592611249.00049.map 1592611249.00050.map 1592611249.00051.map 1592611249.00052.map 1592611249.00053.map 1592611249.00054.map 1592611249.00055.map 1592611249.00056.map 1592611249.00057.map 1592611249.00058.map 1592611249.00059.map 1592611249.00060.map 1592611249.00061.map 1592611249.00062.map 1592611249.00063.map 1592611249.00064.map 1592611249.00065.map 1592611249.00066.map 1592611249.00067.map 1592611249.00068.map 1592611249.00069.map 1592611249.00070.map 1592611249.00071.map 1592611249.00072.map 1592611249.00073.map 1592611249.00074.map 1592611249.00075.map 1592611249.00076.map 1592611249.00077.map 1592611249.00078.map 1592611249.00079.map 1592611249.00080.map 1592611249.00081.map 1592611249.00082.map 1592611249.00083.map 1592611249.00084.map 1592611249.00085.map 1592611249.00086.map 1592611249.00087.map 1592611249.00088.map 1592611249.00089.map 1592611249.00090.map 1592611249.00091.map 1592611249.00092.map 1592611249.00093.map 1592611249.00094.map 1592611249.00095.map 1592611249.00096.map 1592611249.00097.map 1592611249.00098.map 1592611249.00099.map 1592611249.00100.map 1592611249.00101.map 1592611249.00102.map 1592611249.00103.map 1592611249.00104.map 1592611249.00105.map 1592611249.00106.map 1592611249.00107.map 1592611249.00108.map 1592611249.00109.map 1592611249.00110.map 1592611249.00111.map 1592611249.00112.map 1592611249.00113.map 1592611249.00114.map 1592611249.00115.map 1592611249.00116.map 1592611249.00117.map 1592611249.00118.map 1592611249.00119.map 1592611249.00120.map 1592611249.00121.map 1592611249.00122.map 1592611249.00123.map 1592611249.00124.map 1592611249.00125.map 1592611249.00126.map 1592611249.00127.map 1592611249.00128.map 1592611249.00129.map 1592611249.00130.map 1592611249.00131.map 1592611249.00132.map 1592611249.00133.map 1592611249.00134.map 1592611249.00135.map 1592611249.00136.map 1592611249.00137.map 1592611249.00138.map 1592611249.00139.map 1592611249.00140.map 1592611249.00141.map 1592611249.00142.map 1592611249.00143.map 1592611249.00144.map 1592611249.00145.map 1592611249.00146.map 1592611249.00147.map 1592611249.00148.map 1592611249.00149.map 1592611249.00150.map 1592611249.00151.map 1592611249.00152.map 1592611249.00153.map 1592611249.00154.map 1592611249.00155.map 1592611249.00156.map 1592611249.00157.map 1592611249.00158.map 1592611249.00159.map
# Tue Nov 29 08:48:39 GMT 2011: Linking backend file 1592611249_unmapped.txt to /data/maqgene/out/example_user/CB6978/CB6978_unmapped.txt
ln -fs /data/maqgene/work/1592611249_unmapped.txt /data/maqgene/out/example_user/CB6978/CB6978_unmapped.txt
/data/maqgene/makefile:126: warning: undefined variable `mapcheck_parameters'
# Tue Nov 29 09:59:17 GMT 2011: Running 'mapcheck' ...
/data/maqgene/bin/maq pileup -Q 100 -p -m 7 -q 0 /data/maqgene/genomes/elegans.bfa 1592611249.map > 2192903831_pileup.txt
/data/maqgene/bin/maq assemble -N 2 -q 0 -r 0.0 -m 7 -Q 100 -p  1966694035.cns \
	/data/maqgene/genomes/elegans.bfa 1592611249.map 2> 1966694035_log.txt
/data/maqgene/bin/maq mapcheck  /data/maqgene/genomes/elegans.bfa 1592611249.map > 1592611249_check.txt \
	2>/dev/null
/data/maqgene/bin/filter_matching_lines 2192903831_pileup.txt "%s\t%i\t" \
	<(/usr/bin/mysql -Dmaqgenedb -umaqgene  --skip-column-names --batch --raw --local-infile -e "select distinct dna, start + 1 from elegans_features where feature = 'SNP' order by dna, start") "%s\t%i\n" si \
	| /data/maqgene/bin/filter_maq_pileup 'AaCcGgTt,.' 0 \
	> 2192903831_known_snps
# Tue Nov 29 10:22:48 GMT 2011: Linking backend file 1592611249_check.txt to /data/maqgene/out/example_user/CB6978/CB6978_check.txt
ln -fs /data/maqgene/work/1592611249_check.txt /data/maqgene/out/example_user/CB6978/CB6978_check.txt
# Tue Nov 29 10:22:48 GMT 2011: Linking backend file 2192903831_pileup.txt to /data/maqgene/out/example_user/CB6978/CB6978_pileup.txt
ln -fs /data/maqgene/work/2192903831_pileup.txt /data/maqgene/out/example_user/CB6978/CB6978_pileup.txt
# Tue Nov 29 10:22:48 GMT 2011: Making coverage histogram ...
(echo -en "sequencing_depth\tnumber_of_bases\n"; \
	cut -f 4 2192903831_pileup.txt \
	| /data/maqgene/bin/pileup_histogram 100) > 2192903831_coverage.txt
# Tue Nov 29 10:32:04 GMT 2011: Extracting point mutants from consensus ...
ln -fs /data/maqgene/work/2192903831_coverage.txt /data/maqgene/out/example_user/CB6978/CB6978_coverage.txt
/usr/bin/mysql  -umaqgene -Dmaqgenedb  --local-infile -e "drop table if exists 2192903831_pileup; create table 2192903831_pileup ( dna enum('I','II','III','IV','MtDNA','V','X') NOT NULL, start int(10) NOT NULL, ref_base char(1) NOT NULL, read_depth int(5) NOT NULL, sample_reads varchar(100) NOT NULL, A_fwd int(5) NOT NULL, A_rev int(5) NOT NULL, C_fwd int(5) NOT NULL, C_rev int(5) NOT NULL, G_fwd int(5) NOT NULL, G_rev int(5) NOT NULL, T_fwd int(5) NOT NULL, T_rev int(5) NOT NULL, wt_fwd int(5) NOT NULL, wt_rev int(5) NOT NULL, primary key (dna, start) );"
cut -f 1,2,4 2192903831_pileup.txt \
	| /data/maqgene/bin/get_uncovered_regions 50 \
	> 2192903831_uncovered.txt
/usr/bin/mysql  -umaqgene -Dmaqgenedb  --local-infile -e "drop table if exists 1966694035_snps; create table 1966694035_snps ( id int(10) NOT NULL auto_increment, dna char(40) NOT NULL, start int(10) NOT NULL, end int(10) NOT NULL, indel_size int(5) NOT NULL, variant_type enum('indel', 'point') NOT NULL, ref_base char NOT NULL, sample_base char NOT NULL, snp_score int(5) NOT NULL, read_depth int(5) NOT NULL, loci_multiplicity double(5,2) NOT NULL, mapping_quality int(5) NOT NULL, neighbor_quality int(5) NOT NULL, primary key (id), unique key (dna, start), key (indel_size) )"
ln -fs /data/maqgene/work/1966694035_log.txt /data/maqgene/out/example_user/CB6978/CB6978_log.txt
cat 2192903831_pileup.txt \
	| /data/maqgene/bin/filter_maq_pileup 'AaCcGgTt,.' 2 \
	| awk 'BEGIN { OFS="\t" } { $5=substr($5,1,100); print $0 }' \
	| /usr/bin/mysql  -umaqgene -Dmaqgenedb  --local-infile -e "load data local infile '/dev/stdin' into table 2192903831_pileup (dna, @start, ref_base, read_depth, sample_reads, A_fwd, A_rev, C_fwd, C_rev, G_fwd, G_rev, T_fwd, T_rev, wt_fwd, wt_rev) set start = @start - 1; flush table 2192903831_pileup"
/data/maqgene/bin/maq cns2snp 1966694035.cns \
	| cat -b | /usr/bin/mysql  -umaqgene -Dmaqgenedb  --local-infile -e "load data local infile '/dev/stdin' into table 1966694035_snps (id, dna, @start, ref_base, sample_base, snp_score, read_depth, loci_multiplicity, mapping_quality, neighbor_quality) set start = @start - 1, end = @start, indel_size = 0, variant_type = 'point'; flush table 1966694035_snps;"
# Tue Nov 29 10:32:29 GMT 2011: Extracting indels from consensus ...
/data/maqgene/bin/maq indelsoa /data/maqgene/genomes/elegans.bfa 1592611249.map \
	| awk '{ if ($5+$6-$4 >= 5 && $4 <= 1) { print $0 } }' \
	| /usr/bin/mysql  -umaqgene -Dmaqgenedb  --local-infile -e "load data local infile '/dev/stdin' into table 1966694035_snps (dna, @start, indel_size, @num_spanning_reads, @num_left_reads, @num_right_reads, @junk) set id = NULL, start = @start - 1, end = @start - 1 + if (indel_size > 0, 0, -indel_size), ref_base = 'X', sample_base = 'X', variant_type = 'indel', snp_score = -1000, read_depth = if (@num_left_reads < @num_right_reads, @num_left_reads, @num_right_reads), loci_multiplicity = -1000, mapping_quality = -1000, neighbor_quality = -1000; flush table 1966694035_snps;"
cat 2192903831_known_snps \
	| awk 'BEGIN { OFS="\t" } { $5=substr($5,1,100); print $0 }' \
	| /usr/bin/mysql  -umaqgene -Dmaqgenedb  --local-infile -e "load data local infile '/dev/stdin' into table 2192903831_pileup (dna, @start, ref_base, read_depth, sample_reads, A_fwd, A_rev, C_fwd, C_rev, G_fwd, G_rev, T_fwd, T_rev, wt_fwd, wt_rev) set start = @start - 1; flush table 2192903831_pileup"
touch 2192903831_pileup
# Tue Nov 29 10:44:56 GMT 2011: Adding placeholders for known SNPs.
cat 2192903831_known_snps \
	| /usr/bin/mysql  -umaqgene -Dmaqgenedb  --local-infile -e "load data local infile '/dev/stdin' ignore into table 1966694035_snps (dna, @start, ref_base, read_depth, @junk) set id = NULL, start = @start - 1, end = @start - 1, variant_type = 'point', snp_score = -1000, loci_multiplicity = -1000, mapping_quality = -1000, neighbor_quality = -1000; flush table 1966694035_snps;"
Found 160879 variants.
touch 1966694035_snps
# Tue Nov 29 10:45:00 GMT 2011: Writing snp read counts ...
# Tue Nov 29 10:45:00 GMT 2011: Linking backend file 2192903831_uncovered.txt to /data/maqgene/out/example_user/CB6978/CB6978_uncovered.txt
/usr/bin/mysql -Dmaqgenedb -umaqgene  --skip-column-names --batch --raw --local-infile --column-names -e "select f.id, f.dna, f.start + 1 start, e.snp_name, e.snp_base, if(e.snp_base = 'a', p.A_fwd + p.A_rev, if (e.snp_base = 'c', p.C_fwd + p.C_rev, if (e.snp_base = 'g', p.G_fwd + p.G_rev, if (e.snp_base = 't', p.T_fwd + p.T_rev, -1)))) snp_reads, p.ref_base, p.wt_fwd + p.wt_rev wt_reads, p.read_depth, p.sample_reads from elegans_features f join elegans_snp_changes e on (f.attribute = e.snp_name) join 2192903831_pileup p using (dna,start)" > /data/maqgene/out/example_user/CB6978/CB6978_snp_read_counts.txt
ln -fs /data/maqgene/work/2192903831_uncovered.txt /data/maqgene/out/example_user/CB6978/CB6978_uncovered.txt
# Tue Nov 29 10:45:00 GMT 2011: Loading uncovered regions into table ...
# Tue Nov 29 10:45:00 GMT 2011: Finding all genomic features overlapping variants...
cat 2192903831_uncovered.txt \
	| /usr/bin/mysql  -umaqgene -Dmaqgenedb  --local-infile -e "drop table if exists 2192903831_uncovered; create table 2192903831_uncovered ( id int(10) NOT NULL auto_increment, dna char(40) NOT NULL, start int(10) NOT NULL, end int(10) NOT NULL, primary key (id) ) auto_increment = 160880; load data local infile '/dev/stdin' into table 2192903831_uncovered (dna, start, end)"
/usr/bin/mysql  -umaqgene -Dmaqgenedb  --local-infile -e "drop table if exists 1966694035_rel_snps; CREATE TABLE 1966694035_rel_snps ( association_id INT(10) NOT NULL, query_region_id INT(10) unsigned NOT NULL, target_region_id INT(10) NOT NULL, distance INT(10) NOT NULL, overlap INT(10) NOT NULL, same_strand enum('SAME', 'OPP') NOT NULL, num_regions_between INT(3) NOT NULL, PRIMARY KEY (association_id), KEY (query_region_id), KEY (target_region_id) )"
# Tue Nov 29 10:45:00 GMT 2011: Getting masking regions
/data/maqgene/bin/associate_regions -b -1 -c -1000000 -m 2 -o >(/usr/bin/mysql -Dmaqgenedb -umaqgene --skip-column-names --batch --raw --local-infile -e "drop table if exists 1966694035_masked_ids; create table 1966694035_masked_ids (query_region_id int(10) NOT NULL, primary key (query_region_id)); load data local infile '/dev/stdin' ignore into table 1966694035_masked_ids (@j1, query_region_id, @j3, @j4, @j5, @j6, @j7)") -d /data/maqgene/genomes/elegans.dnas -p /data/maqgene/genomes -q <(/usr/bin/mysql -Dmaqgenedb -umaqgene --skip-column-names --batch --raw --local-infile -e "select id, 'elegans', dna, start, end, '+' from 1966694035_snps") -t <(/usr/bin/mysql -Dmaqgenedb -umaqgene --skip-column-names --batch --raw --local-infile -e "select id,'elegans',dna,start,end,strand from elegans_features feature where feature.feature not in ('mRNA', 'intron')") 1>/dev/null;
 0 snp read count lines written.
/data/maqgene/bin/associate_regions -b -1 -c -1000000 -m 0 -o >(/usr/bin/mysql -umaqgene -Dmaqgenedb --local-infile -e "load data local infile '/dev/stdin' into table 1966694035_rel_snps; flush table 1966694035_rel_snps") -d /data/maqgene/genomes/elegans.dnas -p /data/maqgene/genomes -q <(/usr/bin/mysql -Dmaqgenedb -umaqgene --skip-column-names --batch --raw --local-infile -e "select id, 'elegans', dna, start, end, '+' from 1966694035_snps") -t <(/usr/bin/mysql -Dmaqgenedb -umaqgene --skip-column-names --batch --raw --local-infile -e "select id, 'elegans', dna,start,end,strand from elegans_features where feature in ('SNP','exon','five_prime_UTR','intron','mRNA','three_prime_UTR','ncRNA')") 1>/dev/null
Uncovered region statistics:
chromosome	number_uncovered_regions	total_uncovered_length
I	5	626
II	12	1556
III	3	517
IV	7	664
V	7	926
X	11	5337
touch 2192903831_uncovered
# Tue Nov 29 10:45:00 GMT 2011: Finding mRNA features overlapping uncovered regions ...
/usr/bin/mysql  -umaqgene -Dmaqgenedb  --local-infile -e "drop table if exists 2192903831_uncovered_rel; CREATE TABLE 2192903831_uncovered_rel ( association_id INT(10) NOT NULL, query_region_id INT(10) unsigned NOT NULL, target_region_id INT(10) NOT NULL, distance INT(10) NOT NULL, overlap INT(10) NOT NULL, same_strand enum('SAME', 'OPP') NOT NULL, num_regions_between INT(3) NOT NULL, PRIMARY KEY (association_id), KEY (query_region_id), KEY (target_region_id) )"
/data/maqgene/bin/associate_regions -b -1 -c -1000000 -m 0 -o >(/usr/bin/mysql -umaqgene -Dmaqgenedb --local-infile -e "load data local infile '/dev/stdin' into table 2192903831_uncovered_rel; flush table 2192903831_uncovered_rel") -d /data/maqgene/genomes/elegans.dnas -p /data/maqgene/genomes -q <(/usr/bin/mysql -Dmaqgenedb -umaqgene --skip-column-names --batch --raw --local-infile -e "select id, 'elegans', dna, start, end, '+' from 2192903831_uncovered") -t <(/usr/bin/mysql -Dmaqgenedb -umaqgene --skip-column-names --batch --raw --local-infile -e "select id, 'elegans', dna,start,end,strand from elegans_features where feature in ('SNP','exon','five_prime_UTR','intron','mRNA','three_prime_UTR','ncRNA')") 1>/dev/null
touch 1966694035_masked_ids
touch 2192903831_uncovered_rel
# Tue Nov 29 10:45:05 GMT 2011: Calculating translation start offsets for uncovered regions...
/usr/bin/mysql  -umaqgene -Dmaqgenedb  --local-infile -e "drop table if exists 2192903831_offsets_uncovered; create table 2192903831_offsets_uncovered ( id int(10) NOT NULL, gene varchar(50) NOT NULL, 5prime_offset int(10) NOT NULL, 3prime_offset int(10) NOT NULL, total_length int(10) NOT NULL, boundary_type char(20) NOT NULL, primary key (id, gene, boundary_type) );"
/usr/bin/mysql  -umaqgene -Dmaqgenedb  --local-infile -e "insert into 2192903831_offsets_uncovered select reg.id, gene.attribute gene, if(exon.strand = '+', if(reg.start < min(exon.start), reg.start - min(exon.start), sum(if(reg.start < exon.end, reg.start, exon.end) - if(reg.start < exon.start, reg.start, exon.start))), if(max(exon.end) < reg.start, max(exon.end) - reg.start, sum(if(exon.end < reg.start, reg.start, exon.end) - if(exon.start < reg.start, reg.start, exon.start))) ), if(exon.strand = '+', if(max(exon.end) < reg.start, max(exon.end) - reg.start, sum(if(exon.end < reg.start, reg.start, exon.end) - if(exon.start < reg.start, reg.start, exon.start))), if(reg.start < min(exon.start), reg.start - min(exon.start), sum(if(reg.start < exon.end, reg.start, exon.end) - if(reg.start < exon.start, reg.start, exon.start)))), sum(exon.end - exon.start) total_length, 'start' boundary_type from 2192903831_uncovered reg join 2192903831_uncovered_rel rel on (reg.id = rel.query_region_id) join elegans_features gene on (rel.target_region_id = gene.id) join elegans_features exon on (exon.attribute = gene.attribute) where exon.feature = 'exon' and gene.feature = 'mRNA' group by reg.id, gene.attribute"
/usr/bin/mysql  -umaqgene -Dmaqgenedb  --local-infile -e "insert into 2192903831_offsets_uncovered select reg.id, gene.attribute gene, if(exon.strand = '+', if(reg.end < min(exon.start), reg.end - min(exon.start), sum(if(reg.end < exon.end, reg.end, exon.end) - if(reg.end < exon.start, reg.end, exon.start))), if(max(exon.end) < reg.end, max(exon.end) - reg.end, sum(if(exon.end < reg.end, reg.end, exon.end) - if(exon.start < reg.end, reg.end, exon.start))) ), if(exon.strand = '+', if(max(exon.end) < reg.end, max(exon.end) - reg.end, sum(if(exon.end < reg.end, reg.end, exon.end) - if(exon.start < reg.end, reg.end, exon.start))), if(reg.end < min(exon.start), reg.end - min(exon.start), sum(if(reg.end < exon.end, reg.end, exon.end) - if(reg.end < exon.start, reg.end, exon.start)))), sum(exon.end - exon.start) total_length, 'end' boundary_type from 2192903831_uncovered reg join 2192903831_uncovered_rel rel on (reg.id = rel.query_region_id) join elegans_features gene on (rel.target_region_id = gene.id) join elegans_features exon on (exon.attribute = gene.attribute) where exon.feature = 'exon' and gene.feature = 'mRNA' group by reg.id, gene.attribute"
touch 2192903831_offsets_uncovered
touch 1966694035_rel_snps
# Tue Nov 29 10:45:06 GMT 2011: Calculating translation start offsets...
/usr/bin/mysql  -umaqgene -Dmaqgenedb  --local-infile -e "drop table if exists 1966694035_offsets_snps; create table 1966694035_offsets_snps ( id int(10) NOT NULL, gene varchar(50) NOT NULL, 5prime_offset int(10) NOT NULL, 3prime_offset int(10) NOT NULL, total_length int(10) NOT NULL, boundary_type char(20) NOT NULL, primary key (id, gene, boundary_type) );"
# Tue Nov 29 10:45:06 GMT 2011: Getting intergenic regions
/usr/bin/mysql -umaqgene -Dmaqgenedb --local-infile -e "drop table if exists 1966694035_rel_intergenic; create table 1966694035_rel_intergenic like 1966694035_rel_snps"; /data/maqgene/bin/associate_regions -b 50000 -c -1000000 -m 2 -o >(/usr/bin/mysql -umaqgene -Dmaqgenedb --local-infile -e "load data local infile '/dev/stdin' into table 1966694035_rel_intergenic; flush table 1966694035_rel_intergenic") -d /data/maqgene/genomes/elegans.dnas -p /data/maqgene/genomes -q <(/usr/bin/mysql -Dmaqgenedb -umaqgene --skip-column-names --batch --raw --local-infile -e "select id, 'elegans', dna, start, end, '+' from 1966694035_snps") -t <(/usr/bin/mysql -Dmaqgenedb -umaqgene --skip-column-names --batch --raw --local-infile -e "select id, 'elegans',dna,start,end,strand from elegans_features feature where feature.feature = 'mRNA'") 1>/dev/null;
/usr/bin/mysql  -umaqgene -Dmaqgenedb  --local-infile -e "insert into 1966694035_offsets_snps select reg.id, gene.attribute gene, if(exon.strand = '+', if(reg.start < min(exon.start), reg.start - min(exon.start), sum(if(reg.start < exon.end, reg.start, exon.end) - if(reg.start < exon.start, reg.start, exon.start))), if(max(exon.end) < reg.start, max(exon.end) - reg.start, sum(if(exon.end < reg.start, reg.start, exon.end) - if(exon.start < reg.start, reg.start, exon.start))) ), if(exon.strand = '+', if(max(exon.end) < reg.start, max(exon.end) - reg.start, sum(if(exon.end < reg.start, reg.start, exon.end) - if(exon.start < reg.start, reg.start, exon.start))), if(reg.start < min(exon.start), reg.start - min(exon.start), sum(if(reg.start < exon.end, reg.start, exon.end) - if(reg.start < exon.start, reg.start, exon.start)))), sum(exon.end - exon.start) total_length, 'start' boundary_type from 1966694035_snps reg join 1966694035_rel_snps rel on (reg.id = rel.query_region_id) join elegans_features gene on (rel.target_region_id = gene.id) join elegans_features exon on (exon.attribute = gene.attribute) where exon.feature = 'exon' and gene.feature = 'mRNA' group by reg.id, gene.attribute"
# Tue Nov 29 10:45:13 GMT 2011: Filtering masked intergenic regions
/usr/bin/mysql -Dmaqgenedb -umaqgene  --skip-column-names --batch --raw --local-infile -e "delete i.* from 1966694035_rel_intergenic i join 1966694035_masked_ids m using (query_region_id)"
touch 1966694035_rel_intergenic
touch 1966694035_offsets_snps
# Tue Nov 29 10:45:29 GMT 2011: Classifying intergenic relations
/usr/bin/mysql  -umaqgene -Dmaqgenedb  --local-infile -e "drop table if exists 1966694035_intergenic_assoc; create table 1966694035_intergenic_assoc ( id INT(10) NOT NULL, target_region_id INT(10) NOT NULL, relation enum ('upstream', 'downstream', 'into') NOT NULL, distance INT(10) NOT NULL, num_regions_between INT(3) NOT NULL, attribute varchar(50) NOT NULL, primary key (id, target_region_id), key (id, attribute) ); insert into 1966694035_intergenic_assoc select snp.id, rel.target_region_id, if (rel.overlap > 0, 'into', if (feature.strand = '+', if (snp.end < feature.start, 'upstream', 'downstream'), if (feature.end < snp.start, 'upstream', 'downstream') ) ) relation, rel.distance, rel.num_regions_between, feature.attribute from 1966694035_snps snp join 1966694035_rel_intergenic rel on (snp.id = rel.query_region_id) join elegans_features feature on (rel.target_region_id = feature.id)"
touch 1966694035_intergenic_assoc
# Tue Nov 29 10:45:38 GMT 2011: Getting codons affected by point mutations...
/usr/bin/mysql  -umaqgene -Dmaqgenedb  --local-infile -e "drop table if exists 1966694035_codons; create table 1966694035_codons ( id int(10) NOT NULL, gene varchar(50) NOT NULL, ref_codon char(4) NOT NULL, sam_codon char(4) NOT NULL, start char(1) NOT NULL, primary key (id, gene) ); insert into 1966694035_codons select snp.id, off.gene, @ref_codon := substr(gene_dna.sequence, (floor(if(feature.strand = '+', off.5prime_offset, off.5prime_offset - 1 ) / 3 ) * 3 ) + 1, 3 ) ref_codon, insert(@ref_codon, (if(feature.strand = '+', off.5prime_offset, off.5prime_offset - 1) % 3) + 1, 1, if(feature.strand = '+', snp.sample_base, substr('ACGTTGCA', instr('ACGTTGCA', snp.sample_base)+4, 1) ) ) sam_codon, if((feature.strand = '+' && off.5prime_offset < 3) || (feature.strand = '-' && off.5prime_offset - 1 < 3), 'Y', 'N') start from 1966694035_offsets_snps off join 1966694035_snps snp on (off.id = snp.id) join elegans_coding_dna gene_dna using (gene) join elegans_features feature on (gene_dna.gene = feature.attribute and feature.start <= snp.start and feature.end >= snp.end) where snp.variant_type = 'point' and feature.feature = 'exon' and off.boundary_type = 'start' and off.5prime_offset >= 0 and off.3prime_offset >= 0;"
touch 1966694035_codons
/usr/bin/mysql  -umaqgene -Dmaqgenedb  --local-infile -e "drop table if exists 1966694035_marked; create table 1966694035_marked ( id int(10) NOT NULL, class varchar(100) NOT NULL, description varchar(100) NOT NULL, parent_feature varchar(100) NOT NULL, primary key (id, class, parent_feature) );"
# Tue Nov 29 10:45:48 GMT 2011: Finding exonic indels ...
/usr/bin/mysql  -umaqgene -Dmaqgenedb  --local-infile -e "insert into 1966694035_marked select snp.id, if (snp.indel_size < 0, if (rel.overlap % 3 = 0, 'inframe', 'frameshift'), if (snp.indel_size % 3 = 0, 'inframe', 'frameshift')) class, if (rel.overlap != snp.end - snp.start, 'exon_boundary', 'none') description, feature.attribute parent_feature from 1966694035_snps snp join 1966694035_rel_snps rel on (snp.id = rel.query_region_id) join elegans_features feature on (rel.target_region_id = feature.id) where feature.feature = 'exon' and snp.variant_type = 'indel';"
# Tue Nov 29 10:45:49 GMT 2011: Finding coding variants ...
/usr/bin/mysql  -umaqgene -Dmaqgenedb  --local-infile -e "insert into 1966694035_marked select trans.id, if (reference_codons.amino = sample_codons.amino, 'silent', if (reference_codons.amino3 = 'stop', 'readthrough', if (sample_codons.amino3 = 'stop', 'premature_stop', if (trans.start = 'Y' and sample_codons.is_start != 'Y', 'non_start', 'missense') ) ) ) class, concat(ref_codon,'->',sam_codon,'[', reference_codons.amino3,'->',sample_codons.amino3,']') description, trans.gene from 1966694035_codons trans join elegans_genetic_code reference_codons on (trans.ref_codon = reference_codons.codon) join elegans_genetic_code sample_codons on (trans.sam_codon = sample_codons.codon);"
# Tue Nov 29 10:45:49 GMT 2011: Finding noncoding variants ...
/usr/bin/mysql  -umaqgene -Dmaqgenedb  --local-infile -e "insert into 1966694035_marked select snp.id, feature.feature class, 'none' description, feature.attribute parent_feature from 1966694035_snps snp join 1966694035_rel_snps rel on (snp.id = rel.query_region_id) join elegans_features feature on (rel.target_region_id = feature.id) where feature.feature not in ('exon', 'intron', 'mRNA');"
# Tue Nov 29 10:45:50 GMT 2011: Finding splice site variants ...
/usr/bin/mysql  -umaqgene -Dmaqgenedb  --local-infile -e "insert into 1966694035_marked select snp.id, if (feature.strand = '+', if (snp.start - feature.start < 2, 'splice_donor', 'splice_acceptor'), if (snp.start - feature.start < 2, 'splice_acceptor', 'splice_donor')) class, 'none' description, feature.attribute parent_feature from 1966694035_snps snp join 1966694035_rel_snps rel on (snp.id = rel.query_region_id) join elegans_features feature on (rel.target_region_id = feature.id) where feature.feature = 'intron' and rel.distance > -2;"
# Tue Nov 29 10:45:51 GMT 2011: Finding intergenic and intronic variants ...
/usr/bin/mysql  -umaqgene -Dmaqgenedb  --local-infile -e "insert into 1966694035_marked select id, 'nongenic' class, concat(if (relation in ('upstream','into'), - distance, distance),' ',relation) description, attribute from 1966694035_intergenic_assoc where ((relation = 'upstream' and num_regions_between = 0 and distance < 50000) or (relation = 'upstream' and num_regions_between < 2 and distance < 1000) or (relation = 'downstream' and num_regions_between = 0 and distance < 1000) or (relation = 'downstream' and num_regions_between < 2 and distance < 1000) or relation = 'into' );"
# Tue Nov 29 10:45:53 GMT 2011: Finding uncovered regions in genes ...
/usr/bin/mysql  -umaqgene -Dmaqgenedb  --local-infile -e "insert into 1966694035_marked select b.id, 'uncovered', if(b.5prime_offset = e.5prime_offset, concat('non-exonic, ',unc.start - gene.start,' to ',unc.end - gene.start,' bp into'), concat( if(b.5prime_offset < 0, concat(-b.5prime_offset, ' bp upstream'), if(b.3prime_offset < 0, concat(-b.3prime_offset, ' bp downstream'), concat('codon ',floor(b.5prime_offset / 3) + 1) ) ), ' to ', if(e.3prime_offset < 0, concat(-e.3prime_offset, ' bp downstream'), if(e.5prime_offset < 0, concat(-e.5prime_offset, ' bp upstream'), concat('codon ',ceiling(e.5prime_offset / 3) + 1) ) ), ' (', format(100 * (if(e.5prime_offset < 0,0,e.5prime_offset) - (if(b.5prime_offset < 0,0,b.5prime_offset)) ) / b.total_length,0 ), ' % of ', floor(b.total_length/3), ' codons)' ) ) description, b.gene from 2192903831_uncovered unc join 2192903831_offsets_uncovered b using (id) join 2192903831_offsets_uncovered e using (id, gene) join elegans_features gene on (e.gene = gene.attribute) where b.boundary_type = 'start' and e.boundary_type = 'end' and gene.strand = '+' and gene.feature = 'mRNA' union select b.id, 'uncovered', if(b.5prime_offset = e.5prime_offset, concat('non-exonic, ',gene.end - unc.end,' to ',gene.end - unc.start,' bp into'), concat( if(e.5prime_offset < 0, concat(-e.5prime_offset, ' bp upstream'), if(e.3prime_offset < 0, concat(-e.3prime_offset, ' bp downstream'), concat('codon ',floor(e.5prime_offset / 3) + 1) ) ), ' to ', if(b.3prime_offset < 0, concat(-b.3prime_offset, ' bp downstream'), if(b.5prime_offset < 0, concat(-b.5prime_offset, ' bp upstream'), concat('codon ',ceiling(b.5prime_offset / 3) + 1) ) ), ' (', format(100 * (if(b.5prime_offset < 0,0,b.5prime_offset) - (if(e.5prime_offset < 0,0,e.5prime_offset)) ) / b.total_length,0 ), ' % of ', floor(b.total_length/3), ' codons)' ) ) description, b.gene from 2192903831_uncovered unc join 2192903831_offsets_uncovered b using (id) join 2192903831_offsets_uncovered e using (id, gene) join elegans_features gene on (e.gene = gene.attribute) where b.boundary_type = 'start' and e.boundary_type = 'end' and gene.strand = '-' and gene.feature = 'mRNA'"
# Tue Nov 29 10:45:53 GMT 2011: Variants found:
+-----------------+-----------------+
| class           | number_variants |
+-----------------+-----------------+
| five_prime_UTR  |            1299 |
| frameshift      |             100 |
| inframe         |              31 |
| missense        |            6098 |
| ncRNA           |             869 |
| nongenic        |          124387 |
| non_start       |               9 |
| premature_stop  |             683 |
| readthrough     |              19 |
| silent          |            7392 |
| SNP             |            1022 |
| splice_acceptor |              46 |
| splice_donor    |              47 |
| three_prime_UTR |            3549 |
| uncovered       |              11 |
+-----------------+-----------------+
touch 1966694035_marked
# Tue Nov 29 10:45:55 GMT 2011: Combining results ...
/usr/bin/mysql  -umaqgene -Dmaqgenedb  --local-infile -e "drop table if exists 1966694035_combined; create table 1966694035_combined (primary key (id, class, description), key (dna, start)) as select snp.id, 'CB6978' mutant_strain, snp.dna, snp.start + 1 start, snp.end - snp.start length, snp.ref_base reference_base, snp.sample_base sample_base, snp.snp_score consensus_score, snp.loci_multiplicity, snp.mapping_quality, snp.neighbor_quality, (pile.wt_fwd + pile.wt_rev) number_wildtype_reads, (snp.read_depth - (pile.wt_fwd + pile.wt_rev)) number_variant_reads, snp.read_depth sequencing_depth, pile.sample_reads, snp.variant_type, snp.indel_size, class.class, class.description, group_concat(class.parent_feature order by class.parent_feature) parent_features from 1966694035_snps snp join 2192903831_pileup pile using (dna,start) join 1966694035_marked class on (snp.id = class.id) left join elegans_per_locus using (dna,start) where (snp.variant_type = 'point' and (snp.snp_score >= 3 and snp.loci_multiplicity <= 10 and snp.neighbor_quality >= 0 and pile.read_depth >= 4 and ((pile.read_depth - pile.wt_fwd - pile.wt_rev) / pile.read_depth) >= 0.5) or snp.variant_type = 'indel' ) group by id, class, description union select unc.id id, 'CB6978' mutant_strain, unc.dna, unc.start + 1 start, unc.end - unc.start length, '-' reference_base, '-' sample_base, 0 consensus_score, 0, 0, 0, 0 number_wildtype_reads, 0 number_variant_reads, 0 sequencing_depth, '' sample_reads, 'uncovered', 0, class.class, class.description, group_concat(class.parent_feature order by class.parent_feature) parent_features from 2192903831_uncovered unc join 1966694035_marked class on (unc.id = class.id) left join elegans_per_locus using (dna,start) group by id, class, description; alter table 1966694035_combined order by dna, start, length"
touch 1966694035_combined
# Tue Nov 29 10:46:04 GMT 2011: Writing results to flat file ...
/usr/bin/mysql -Dmaqgenedb -umaqgene  --skip-column-names --batch --raw --local-infile --column-names -e "select * from 1966694035_combined" > /data/maqgene/out/example_user/CB6978/CB6978_flat.txt
# Tue Nov 29 10:46:04 GMT 2011: Writing results to grouped file ...
/usr/bin/mysql -Dmaqgenedb -umaqgene  --skip-column-names --batch --raw --local-infile --column-names -e "select id, mutant_strain, dna, start, length, reference_base, sample_base, consensus_score, loci_multiplicity, mapping_quality, neighbor_quality, number_wildtype_reads, number_variant_reads, sequencing_depth, sample_reads, variant_type, indel_size, group_concat(class) classes, group_concat(description) descriptions, group_concat(concat('{',parent_features,'}')) parent_features from 1966694035_combined group by id order by dna, start;" > /data/maqgene/out/example_user/CB6978/CB6978_grouped.txt
 3781 lines written.
 2231 lines written.
rm 1592611249.00102.unmapped 1592611249.00060.1.bfq 1592611249.00012.unmapped 1592611249.00107.1.bfq 1592611249.00034.2.fastq 1592611249.00113.2.bfq 1592611249.00145.1.fastq 1592611249.00131.2.bfq 1592611249.00138.2.fastq 1592611249.00148.2.bfq 1592611249.00141.map 1592611249.00113.mismatch 1592611249.00029.2.fastq 1592611249.00158.2.fastq 1592611249.00130.2.fastq 1592611249.00131.mismatch 1592611249.00069.2.bfq 1592611249.00119.1.bfq 1592611249.00116.2.fastq 1592611249.00046.2.fastq 1592611249.00094.map 1592611249.00062.2.fastq 1592611249.00054.unmapped 1592611249.00065.2.bfq 1592611249.00143.2.fastq 1592611249.00121.unmapped 1592611249.00067.1.bfq 1592611249.00026.1.fastq 1592611249.00042.map 1592611249.00134.2.fastq 1592611249.00116.2.bfq 1592611249.00018.unmapped 1592611249.00026.2.fastq 1592611249.00032.mismatch 1592611249.00089.mismatch 1592611249.00076.1.fastq 1592611249.00129.2.fastq 1592611249.00023.mismatch 1592611249.00024.map 1592611249.00031.2.fastq 1592611249.00019.2.bfq 1592611249.00111.2.bfq 1592611249.00028.1.bfq 1592611249.00049.map 1592611249.00047.2.fastq 1592611249.00074.1.bfq 1592611249.00004.unmapped 1592611249.00079.map 1592611249.00051.1.fastq 1592611249.00066.unmapped 1592611249.00033.2.bfq 1592611249.00112.1.bfq 1592611249.00078.2.bfq 1592611249.00022.unmapped 1592611249.00087.map 1592611249.00077.map 1592611249.00126.1.fastq 1592611249.00147.map 1592611249.00118.unmapped 1592611249.00048.2.fastq 1592611249.00100.map 1592611249.00084.1.fastq 1592611249.00142.map 1592611249.00123.mismatch 1592611249.00124.map 1592611249.00045.2.fastq 1592611249.00134.2.bfq 1592611249.00150.2.bfq 1592611249.00128.1.bfq 1592611249.00147.1.bfq 1592611249.00137.1.bfq 1592611249.00116.mismatch 1592611249.00119.mismatch 1592611249.00100.1.bfq 1592611249.00003.unmapped 1592611249.00037.1.bfq 1592611249.00030.unmapped 1592611249.00147.2.fastq 1592611249.00073.unmapped 1592611249.00122.unmapped 1592611249.00029.1.bfq 1592611249.00145.unmapped 1592611249.00060.map 1592611249.00094.1.bfq 1592611249.00093.unmapped 1592611249.00084.1.bfq 1592611249.00063.1.fastq 1592611249.00025.2.bfq 1592611249.00051.2.bfq 1592611249.00146.2.bfq 1592611249.00028.mismatch 1592611249.00114.1.bfq 1592611249.00137.1.fastq 1592611249.00103.unmapped 1592611249.00004.1.bfq 1592611249.00033.unmapped 1592611249.00031.unmapped 1592611249.00126.2.fastq 1592611249.00109.mismatch 1592611249.00106.map 1592611249.00030.mismatch 1592611249.00133.2.bfq 1592611249.00056.1.bfq 1592611249.00127.unmapped 1592611249.00149.map 1592611249.00061.map 1592611249.00068.unmapped 1592611249.00085.2.bfq 1592611249.00128.2.bfq 1592611249.00078.map 1592611249.00017.mismatch 1592611249.00110.2.bfq 1592611249.00038.map 1592611249.00037.2.bfq 1592611249.00128.mismatch 1592611249.00104.1.bfq 1592611249.00028.2.bfq 1592611249.00086.1.fastq 1592611249.00113.unmapped 1592611249.00058.mismatch 1592611249.00131.unmapped 1592611249.00145.2.fastq 1592611249.00014.1.bfq 1592611249.00007.2.bfq 1592611249.00105.1.bfq 1592611249.00063.2.fastq 1592611249.00016.map 1592611249.00156.1.bfq 1592611249.00123.1.fastq 1592611249.00077.1.bfq 1592611249.00033.mismatch 1592611249.00076.2.fastq 1592611249.00129.2.bfq 1592611249.00142.1.bfq 1592611249.00034.map 1592611249.00135.map 1592611249.00004.2.bfq 1592611249.00049.1.bfq 1592611249.00040.2.bfq 1592611249.00059.1.bfq 1592611249.00138.map 1592611249.00137.2.bfq 1592611249.00005.1.fastq 1592611249.00004.mismatch 1592611249.00029.map 1592611249.00046.map 1592611249.00050.1.fastq 1592611249.00023.unmapped 1592611249.00091.map 1592611249.00137.mismatch 1592611249.00110.map 1592611249.00024.1.bfq 1592611249.00044.1.fastq 1592611249.00056.mismatch 1592611249.00116.map 1592611249.00019.unmapped 1592611249.00062.map 1592611249.00085.unmapped 1592611249.00036.1.fastq 1592611249.00158.mismatch 1592611249.00117.mismatch 3031186332_split1 1592611249.00104.2.bfq 1592611249.00108.1.bfq 1592611249.00074.2.bfq 1592611249.00134.map 1592611249.00079.2.fastq 1592611249.00105.1.fastq 1592611249.00155.map 1592611249.00014.2.bfq 1592611249.00129.map 1592611249.00042.1.bfq 1592611249.00041.mismatch 1592611249.00123.unmapped 1592611249.00141.unmapped 1592611249.00026.mismatch 1592611249.00074.mismatch 1592611249.00047.map 1592611249.00077.2.bfq 1592611249.00140.mismatch 1592611249.00101.map 1592611249.00056.2.bfq 1592611249.00119.unmapped 1592611249.00032.unmapped 1592611249.00144.1.fastq 1592611249.00077.mismatch 1592611249.00014.2.fastq 1592611249.00076.2.bfq 1592611249.00094.2.bfq 1592611249.00150.1.fastq 1592611249.00027.2.fastq 1592611249.00138.2.bfq 1592611249.00005.2.fastq 1592611249.00015.1.fastq 1592611249.00050.2.fastq 1592611249.00006.map 1592611249.00114.2.bfq 1592611249.00087.1.bfq 1592611249.00122.1.bfq 1592611249.00067.unmapped 1592611249.00036.2.fastq 1592611249.00104.unmapped 1592611249.00048.mismatch 1592611249.00114.mismatch 1592611249.00065.unmapped 1592611249.00084.2.bfq 1592611249.00141.mismatch 1592611249.00088.mismatch 1592611249.00124.1.bfq 1592611249.00143.1.fastq 1592611249.00045.mismatch 1592611249.00096.1.fastq 1592611249.00115.1.fastq 1592611249.00043.map 1592611249.00152.2.bfq 1592611249.00078.1.bfq 1592611249.00151.1.fastq 1592611249.00014.unmapped 1592611249.00105.2.fastq 1592611249.00017.1.fastq 1592611249.00136.1.fastq 1592611249.00042.2.bfq 1592611249.00051.2.fastq 1592611249.00044.2.fastq 1592611249.00006.1.bfq 1592611249.00023.1.bfq 1592611249.00081.1.bfq 1592611249.00042.mismatch 1592611249.00052.1.fastq 1592611249.00128.unmapped 1592611249.00056.unmapped 1592611249.00015.2.fastq 1592611249.00132.1.bfq 1592611249.00083.mismatch 1592611249.00075.1.fastq 1592611249.00150.2.fastq 1592611249.00037.unmapped 1592611249.00072.map 1592611249.00127.2.fastq 1592611249.00103.mismatch 1592611249.00056.2.fastq 1592611249.00087.2.bfq 1592611249.00086.2.fastq 1592611249.00028.2.fastq 1592611249.00069.1.fastq 1592611249.00013.mismatch 1592611249.00120.map 1592611249.00067.1.fastq 1592611249.00087.mismatch 1592611249.00091.1.bfq 1592611249.00061.1.bfq 1592611249.00124.2.bfq 1592611249.00158.1.bfq 1592611249.00115.2.fastq 1592611249.00038.unmapped 1592611249.00142.mismatch 1592611249.00124.mismatch 1592611249.00151.2.fastq 1592611249.00152.1.fastq 1592611249.00038.1.bfq 1592611249.00040.unmapped 1592611249.00088.map 1592611249.00137.unmapped 1592611249.00049.2.bfq 1592611249.00095.1.fastq 1592611249.00059.2.bfq 1592611249.00063.map 1592611249.00006.2.bfq 1592611249.00079.2.bfq 1592611249.00149.unmapped 1592611249.00069.unmapped 1592611249.00060.2.bfq 1592611249.00052.2.fastq 1592611249.00006.mismatch 1592611249.00076.map 1592611249.00055.map 1592611249.00125.1.fastq 1592611249.00044.map 1592611249.00158.unmapped 1592611249.00060.mismatch 1592611249.00016.1.bfq 1592611249.00021.map 1592611249.00075.2.fastq 1592611249.00142.2.bfq 1592611249.00148.1.fastq 1592611249.00008.map 1592611249.00144.2.fastq 1592611249.00034.1.bfq 1592611249.00094.mismatch 1592611249.00041.unmapped 1592611249.00138.1.bfq 1592611249.00108.unmapped 1592611249.00074.unmapped 1592611249.00140.unmapped 1592611249.00078.2.fastq 1592611249.00128.2.fastq 1592611249.00106.mismatch 1592611249.00084.unmapped 1592611249.00116.1.bfq 1592611249.00061.mismatch 1592611249.00062.1.bfq 1592611249.00086.map 1592611249.00038.2.bfq 1592611249.00096.mismatch 1592611249.00094.unmapped 1592611249.00140.1.bfq 1592611249.00115.2.bfq 1592611249.00156.unmapped 1592611249.00095.2.fastq 1592611249.00138.unmapped 1592611249.00039.1.fastq 1592611249.00097.mismatch 1592611249.00051.mismatch 1592611249.00049.unmapped 1592611249.00059.unmapped 1592611249.00083.1.bfq 1592611249.00114.unmapped 1592611249.00079.unmapped 1592611249.00129.1.bfq 1592611249.00025.1.fastq 1592611249.00125.2.fastq 1592611249.00089.map 1592611249.00016.2.bfq 1592611249.00047.1.bfq 1592611249.00024.2.bfq 1592611249.00077.unmapped 1592611249.00148.2.fastq 1592611249.00045.1.fastq 1592611249.00149.2.bfq 1592611249.00009.unmapped 1592611249.00043.mismatch 1592611249.00005.map 1592611249.00034.2.bfq 1592611249.00108.map 1592611249.00050.map 1592611249.00053.1.fastq 1592611249.00156.2.bfq 1592611249.00009.mismatch 1592611249.00027.mismatch 1592611249.00040.2.fastq 1592611249.00034.mismatch 1592611249.00036.map 1592611249.00009.map 1592611249.00042.unmapped 1592611249.00136.2.fastq 1592611249.00139.1.fastq 1592611249.00138.mismatch 1592611249.00064.2.fastq 1592611249.00147.2.bfq 1592611249.00061.2.bfq 1592611249.00085.1.fastq 1592611249.00029.mismatch 1592611249.00106.1.bfq 1592611249.00100.2.bfq 1592611249.00111.map 1592611249.00024.unmapped 1592611249.00120.1.bfq 1592611249.00062.2.bfq 1592611249.00046.1.bfq 1592611249.00015.unmapped 1592611249.00105.map 1592611249.00143.2.bfq 1592611249.00026.1.bfq 1592611249.00062.mismatch 1592611249.00051.map 1592611249.00111.1.bfq 1592611249.00112.map 1592611249.00035.1.fastq 1592611249.00143.mismatch 1592611249.00155.2.bfq 1592611249.00087.unmapped 1592611249.00088.1.bfq 1592611249.00134.mismatch 1592611249.00136.map 1592611249.00135.1.bfq 1592611249.00044.mismatch 1592611249.00082.1.bfq 1592611249.00017.unmapped 1592611249.00155.mismatch 1592611249.00015.map 1592611249.00069.2.fastq 1592611249.00047.2.bfq 1592611249.00129.mismatch 1592611249.00142.unmapped 1592611249.00150.map 1592611249.00153.1.fastq 1592611249.00124.unmapped 1592611249.00091.2.bfq 1592611249.00010.unmapped 1592611249.00055.1.bfq 1592611249.00047.mismatch 1592611249.00009.2.fastq 1592611249.00053.2.fastq 1592611249.00021.1.bfq 1592611249.00126.1.bfq 1592611249.00043.1.bfq 1592611249.00008.1.bfq 1592611249.00125.map 1592611249.00104.1.fastq 1592611249.00078.unmapped 1592611249.00139.2.fastq 1592611249.00109.map 1592611249.00135.1.fastq 1592611249.00060.unmapped 1592611249.00086.mismatch 1592611249.00139.1.bfq 1592611249.00157.2.fastq 3031186332_split2 1592611249.00145.1.bfq 1592611249.00151.map 1592611249.00032.2.bfq 1592611249.00122.2.bfq 1592611249.00074.1.fastq 1592611249.00009.1.fastq 1592611249.00017.map 1592611249.00026.2.bfq 1592611249.00070.1.fastq 1592611249.00080.1.fastq 1592611249.00090.1.fastq 1592611249.00035.2.fastq 1592611249.00057.1.bfq 1592611249.00146.1.fastq 1592611249.00147.mismatch 1592611249.00102.1.bfq 1592611249.00022.map 1592611249.00127.map 1592611249.00052.map 1592611249.00106.unmapped 1592611249.00063.1.bfq 1592611249.00135.unmapped 1592611249.00098.map 1592611249.00056.1.fastq 1592611249.00159.1.fastq 1592611249.00061.unmapped 1592611249.00153.2.fastq 1592611249.00076.1.bfq 1592611249.00039.map 1592611249.00046.unmapped 1592611249.00059.2.fastq 1592611249.00086.1.bfq 1592611249.00089.1.bfq 1592611249.00000.1.fastq 1592611249.00107.1.fastq 1592611249.00136.2.bfq 1592611249.00097.unmapped 1592611249.00126.2.bfq 1592611249.00144.mismatch 1592611249.00121.1.bfq 1592611249.00081.1.fastq 1592611249.00115.mismatch 1592611249.00048.map 1592611249.00135.2.fastq 1592611249.00126.mismatch 1592611249.00043.2.bfq 1592611249.00067.map 1592611249.00009.1.bfq 1592611249.00057.1.fastq 1592611249.00038.1.fastq 1592611249.00043.unmapped 1592611249.00025.2.fastq 1592611249.00007.2.fastq 1592611249.00001.1.fastq 1592611249.00100.1.fastq 1592611249.00095.map 1592611249.00070.2.fastq 1592611249.00080.2.fastq 1592611249.00090.2.fastq 1592611249.00034.unmapped 1592611249.00117.map 1592611249.00079.1.bfq 1592611249.00146.2.fastq 1592611249.00068.2.fastq 1592611249.00097.1.bfq 1592611249.00063.2.bfq 1592611249.00029.unmapped 1592611249.00122.map 1592611249.00159.2.fastq 1592611249.00072.2.bfq 1592611249.00154.unmapped 1592611249.00063.mismatch 1592611249.00148.map 1592611249.00026.map 1592611249.00058.1.bfq 1592611249.00085.2.fastq 1592611249.00116.unmapped 1592611249.00071.2.bfq 1592611249.00106.2.bfq 1592611249.00060.1.fastq 1592611249.00107.2.fastq 1592611249.00062.unmapped 1592611249.00027.2.bfq 1592611249.00076.mismatch 1592611249.00099.1.fastq 1592611249.00106.1.fastq 1592611249.00143.unmapped 1592611249.00005.1.bfq 1592611249.00071.2.fastq 1592611249.00081.2.fastq 1592611249.00050.1.bfq 1592611249.00134.unmapped 1592611249.00094.1.fastq 1592611249.00157.1.fastq 1592611249.00064.map 1592611249.00090.1.bfq 1592611249.00155.unmapped 1592611249.00141.2.fastq 1592611249.00036.1.bfq 1592611249.00129.unmapped 1592611249.00057.2.fastq 1592611249.00088.2.bfq 1592611249.00082.1.fastq 1592611249.00109.1.bfq 1592611249.00047.unmapped 1592611249.00082.2.bfq 1592611249.00001.2.fastq 1592611249.00100.2.fastq 1592611249.00119.map 1592611249.00156.1.fastq 1592611249.00002.1.fastq 1592611249.00045.map 1592611249.00111.1.fastq 1592611249.00143.map 1592611249.00049.1.fastq 1592611249.00059.1.fastq 1592611249.00075.mismatch 1592611249.00079.1.fastq 1592611249.00021.2.bfq 1592611249.00098.1.fastq 1592611249.00079.mismatch 1592611249.00051.1.bfq 1592611249.00095.1.bfq 1592611249.00008.2.bfq 1592611249.00070.1.bfq 1592611249.00136.1.bfq 1592611249.00117.1.fastq 1592611249.00149.1.bfq 1592611249.00015.1.bfq 1592611249.00053.map 1592611249.00126.map 1592611249.00101.2.fastq 1592611249.00011.2.fastq 1592611249.00110.2.fastq 1592611249.00102.1.fastq 1592611249.00012.1.fastq 1592611249.00039.1.bfq 1592611249.00147.unmapped 1592611249.00120.unmapped 1592611249.00050.2.bfq 1592611249.00139.map 1592611249.00152.2.fastq 1592611249.00065.mismatch 1592611249.00005.mismatch 1592611249.00036.2.bfq 1592611249.00050.mismatch 1592611249.00057.2.bfq 1592611249.00072.2.fastq 1592611249.00017.2.fastq 1592611249.00092.2.fastq 1592611249.00036.mismatch 1592611249.00088.unmapped 1592611249.00115.1.bfq 1592611249.00002.2.fastq 1592611249.00097.1.fastq 1592611249.00020.2.fastq 1592611249.00054.1.fastq 1592611249.00035.map 1592611249.00105.2.bfq 1592611249.00112.1.fastq 1592611249.00089.2.bfq 1592611249.00121.1.fastq 1592611249.00126.unmapped 1592611249.00055.unmapped 1592611249.00098.2.fastq 1592611249.00152.1.bfq 1592611249.00107.unmapped 1592611249.00018.1.fastq 1592611249.00105.mismatch 1592611249.00021.unmapped 1592611249.00061.1.fastq 1592611249.00153.map 1592611249.00008.unmapped 1592611249.00052.1.bfq 1592611249.00064.1.fastq 1592611249.00117.2.fastq 1592611249.00059.map 1592611249.00145.map 1592611249.00015.2.bfq 1592611249.00084.2.fastq 1592611249.00075.1.bfq 1592611249.00136.mismatch 1592611249.00066.2.bfq 1592611249.00102.2.fastq 1592611249.00012.2.fastq 1592611249.00015.mismatch 1592611249.00120.2.fastq 1592611249.00150.mismatch 1592611249.00078.1.fastq 1592611249.00022.1.fastq 1592611249.00118.1.fastq 1592611249.00143.1.bfq 1592611249.00041.map 1592611249.00063.unmapped 1592611249.00097.2.bfq 1592611249.00025.1.bfq 1592611249.00057.unmapped 1592611249.00154.1.fastq 1592611249.00007.map 1592611249.00076.unmapped 1592611249.00113.map 1592611249.00070.map 1592611249.00080.map 1592611249.00090.map 1592611249.00054.2.fastq 1592611249.00058.2.bfq 1592611249.00151.2.bfq 1592611249.00073.1.bfq 1592611249.00003.1.fastq 1592611249.00112.2.fastq 1592611249.00030.1.fastq 1592611249.00121.2.fastq 1592611249.00155.1.bfq 1592611249.00073.1.fastq 1592611249.00151.mismatch 1592611249.00018.2.fastq 1592611249.00096.2.fastq 1592611249.00045.1.bfq 1592611249.00027.1.fastq 1592611249.00159.map 1592611249.00094.2.fastq 1592611249.00093.1.fastq 1592611249.00125.1.bfq 1592611249.00123.2.bfq 1592611249.00133.mismatch 1592611249.00046.1.fastq 1592611249.00000.map 1592611249.00107.map 1592611249.00075.2.bfq 1592611249.00052.mismatch 1592611249.00110.1.fastq 1592611249.00157.2.bfq 1592611249.00148.1.bfq 1592611249.00109.2.bfq 1592611249.00066.2.fastq 1592611249.00085.mismatch 1592611249.00071.map 1592611249.00103.1.fastq 1592611249.00081.map 1592611249.00022.2.fastq 1592611249.00031.1.fastq 1592611249.00156.2.fastq 1592611249.00013.1.fastq 1592611249.00048.1.bfq 1592611249.00130.1.fastq 1592611249.00134.1.bfq 1592611249.00118.2.fastq 1592611249.00049.2.fastq 1592611249.00057.map 1592611249.00027.map 1592611249.00127.1.fastq 1592611249.00064.1.bfq 1592611249.00131.1.bfq 1592611249.00154.2.fastq 1592611249.00046.2.bfq 1592611249.00066.1.bfq 1592611249.00068.1.fastq 1592611249.00025.mismatch 1592611249.00001.map 1592611249.00010.map 1592611249.00006.unmapped 1592611249.00112.unmapped 1592611249.00003.2.fastq 1592611249.00030.2.fastq 1592611249.00058.unmapped 1592611249.00101.1.fastq 1592611249.00011.1.fastq 1592611249.00073.2.fastq 1592611249.00005.unmapped 1592611249.00054.2.bfq 1592611249.00122.2.fastq 1592611249.00113.1.fastq 1592611249.00083.2.fastq 1592611249.00131.1.fastq 1592611249.00068.2.bfq 1592611249.00095.mismatch 1592611249.00093.2.fastq 1592611249.00152.mismatch 1592611249.00096.unmapped 1592611249.00125.2.bfq 1592611249.00037.1.fastq 1592611249.00037.mismatch 1592611249.00071.1.bfq 1592611249.00104.mismatch 1592611249.00020.1.fastq 1592611249.00011.map 1592611249.00125.mismatch 1592611249.00029.2.bfq 1592611249.00103.2.fastq 1592611249.00109.unmapped 1592611249.00019.mismatch 1592611249.00053.1.bfq 1592611249.00148.mismatch 1592611249.00157.map 1592611249.00013.2.fastq 1592611249.00105.unmapped 1592611249.00032.1.fastq 1592611249.00158.2.bfq 1592611249.00014.mismatch 1592611249.00023.1.fastq 1592611249.00082.map 1592611249.00010.1.fastq 1592611249.00064.2.bfq 1592611249.00092.map 1592611249.00106.2.fastq 1592611249.00055.2.bfq 1592611249.00067.mismatch 1592611249.00099.2.fastq 1592611249.00136.unmapped 1592611249.00019.1.fastq 1592611249.00064.mismatch 1592611249.00002.map 1592611249.00020.map 1592611249.00028.map 1592611249.00144.unmapped 1592611249.00132.mismatch 1592611249.00071.1.fastq 1592611249.00010.2.fastq 1592611249.00150.unmapped 1592611249.00139.2.bfq 1592611249.00007.1.fastq 1592611249.00039.2.bfq 1592611249.00113.2.fastq 1592611249.00035.1.bfq 1592611249.00131.2.fastq 1592611249.00123.map 1592611249.00144.2.bfq 1592611249.00062.1.fastq 1592611249.00039.mismatch 1592611249.00031.2.bfq 1592611249.00132.1.fastq 1592611249.00072.1.fastq 1592611249.00150.1.bfq 1592611249.00086.2.bfq 1592611249.00153.1.bfq 1592611249.00099.1.bfq 1592611249.00119.1.fastq 1592611249.00102.map 1592611249.00012.map 1592611249.00115.unmapped 1592611249.00095.2.bfq 1592611249.00120.1.fastq 1592611249.00053.2.bfq 1592611249.00133.2.fastq 1592611249.00084.mismatch 1592611249.00151.unmapped 1592611249.00038.mismatch 1592611249.00068.mismatch 1592611249.00032.2.fastq 1592611249.00053.mismatch 1592611249.00048.2.bfq 1592611249.00023.2.fastq 1592611249.00141.1.bfq 1592611249.00016.unmapped 1592611249.00130.unmapped 1592611249.00144.map 1592611249.00088.1.fastq 1592611249.00139.mismatch 1592611249.00052.unmapped 1592611249.00016.mismatch 1592611249.00019.2.fastq 1592611249.00027.1.bfq 1592611249.00028.1.fastq 1592611249.00054.map 1592611249.00075.unmapped 1592611249.00007.1.bfq 1592611249.00121.map 1592611249.00091.2.fastq 1592611249.00055.1.fastq 1592611249.00080.1.bfq 1592611249.00018.map 1592611249.00035.2.bfq 1592611249.00021.1.fastq 1592611249.00146.1.bfq 1592611249.00008.1.fastq 1592611249.00132.2.fastq 1592611249.00035.mismatch 1592611249.00025.unmapped 1592611249.00083.2.bfq 1592611249.00159.1.bfq 1592611249.00153.2.bfq 1592611249.00119.2.fastq 1592611249.00066.map 1592611249.00128.1.fastq 1592611249.00092.1.fastq 1592611249.00000.1.bfq 1592611249.00153.mismatch 1592611249.00140.1.fastq 1592611249.00130.1.bfq 1592611249.00013.map 1592611249.00044.1.bfq 1592611249.00058.1.fastq 1592611249.00069.mismatch 1592611249.00118.map 1592611249.00095.unmapped 1592611249.00013.2.bfq 1592611249.00041.2.bfq 1592611249.00152.unmapped 1592611249.00135.2.bfq 1592611249.00156.mismatch 1592611249.00016.1.fastq 1592611249.00154.map 1592611249.00096.map 1592611249.00049.mismatch 1592611249.00033.1.fastq 1592611249.00135.mismatch 1592611249.00125.unmapped 1592611249.00045.unmapped 1592611249.00065.2.fastq 1592611249.00041.1.bfq 1592611249.00003.map 1592611249.00009.2.bfq 1592611249.00030.map 1592611249.00148.unmapped 1592611249.00127.1.bfq 1592611249.00001.1.bfq 1592611249.00010.1.bfq 1592611249.00073.map 1592611249.00070.2.bfq 1592611249.00080.2.bfq 1592611249.00090.2.bfq 1592611249.00024.mismatch 1592611249.00089.1.fastq 1592611249.00004.1.fastq 1592611249.00007.mismatch 1592611249.00083.map 1592611249.00151.1.bfq 1592611249.00040.1.fastq 1592611249.00145.2.bfq 1592611249.00070.mismatch 1592611249.00080.mismatch 1592611249.00093.map 1592611249.00020.1.bfq 1592611249.00123.2.fastq 1592611249.00149.1.fastq 1592611249.00146.mismatch 1592611249.00108.1.fastq 1592611249.00033.2.fastq 1592611249.00159.2.bfq 1592611249.00064.unmapped 1592611249.00123.1.bfq 1592611249.00090.mismatch 1592611249.00023.2.bfq 1592611249.00083.unmapped 1592611249.00140.2.bfq 1592611249.00133.1.fastq 1592611249.00159.mismatch 1592611249.00103.map 1592611249.00000.2.bfq 1592611249.00107.2.bfq 1592611249.00127.2.bfq 1592611249.00115.map 1592611249.00031.map 1592611249.00101.1.bfq 1592611249.00011.1.bfq 1592611249.00110.1.bfq 1592611249.00037.2.fastq 1592611249.00130.map 1592611249.00065.1.fastq 1592611249.00069.map 1592611249.00000.mismatch 1592611249.00108.mismatch 1592611249.00081.2.bfq 1592611249.00039.unmapped 1592611249.00041.1.fastq 1592611249.00013.unmapped 1592611249.00111.2.fastq 1592611249.00014.1.fastq 1592611249.00081.mismatch 1592611249.00099.map 1592611249.00091.mismatch 1592611249.00059.mismatch 1592611249.00040.mismatch 1592611249.00017.1.bfq 1592611249.00152.map 1592611249.00092.1.bfq 1592611249.00144.1.bfq 1592611249.00077.1.fastq 1592611249.00057.mismatch 1592611249.00001.2.bfq 1592611249.00010.2.bfq 1592611249.00067.2.bfq 1592611249.00002.1.bfq 1592611249.00099.2.bfq 1592611249.00071.mismatch 1592611249.00004.2.fastq 1592611249.00010.mismatch 1592611249.00053.unmapped 1592611249.00131.map 1592611249.00001.mismatch 1592611249.00100.mismatch 1592611249.00137.2.fastq 1592611249.00097.map 1592611249.00149.mismatch 1592611249.00098.1.bfq 1592611249.00071.unmapped 1592611249.00140.map 1592611249.00149.2.fastq 1592611249.00121.2.bfq 1592611249.00139.unmapped 1592611249.00114.1.fastq 1592611249.00078.mismatch 1592611249.00141.1.fastq 1592611249.00108.2.bfq 1592611249.00117.1.bfq 1592611249.00088.2.fastq 1592611249.00109.1.fastq 1592611249.00075.map 1592611249.00146.map 1592611249.00101.2.bfq 1592611249.00011.2.bfq 1592611249.00082.2.fastq 1592611249.00012.1.bfq 1592611249.00104.2.fastq 1592611249.00032.map 1592611249.00023.map 1592611249.00011.mismatch 1592611249.00041.2.fastq 1592611249.00035.unmapped 1592611249.00055.2.fastq 1592611249.00074.2.fastq 1592611249.00157.1.bfq 1592611249.00021.2.fastq 1592611249.00042.1.fastq 1592611249.00157.mismatch 1592611249.00019.map 1592611249.00017.2.bfq 1592611249.00133.1.bfq 1592611249.00008.2.fastq 1592611249.00092.2.bfq 1592611249.00077.2.fastq 1592611249.00072.mismatch 1592611249.00153.unmapped 1592611249.00096.1.bfq 1592611249.00024.1.fastq 1592611249.00082.mismatch 1592611249.00002.2.bfq 1592611249.00092.mismatch 1592611249.00089.unmapped 1592611249.00040.1.bfq 1592611249.00054.1.bfq 1592611249.00099.unmapped 1592611249.00046.mismatch 1592611249.00051.unmapped 1592611249.00002.mismatch 1592611249.00097.2.fastq 1592611249.00025.map 1592611249.00098.2.bfq 1592611249.00111.mismatch 1592611249.00132.map 1592611249.00044.2.bfq 1592611249.00018.1.bfq 1592611249.00072.1.bfq 1592611249.00114.2.fastq 1592611249.00132.2.bfq 1592611249.00087.1.fastq 1592611249.00098.mismatch 1592611249.00048.unmapped 1592611249.00117.2.bfq 1592611249.00016.2.fastq 1592611249.00142.1.fastq 1592611249.00133.map 1592611249.00124.1.fastq 1592611249.00102.2.bfq 1592611249.00007.unmapped 1592611249.00005.2.bfq 1592611249.00012.2.bfq 1592611249.00120.2.bfq 1592611249.00027.unmapped 1592611249.00070.unmapped 1592611249.00080.unmapped 1592611249.00090.unmapped 1592611249.00022.1.bfq 1592611249.00102.mismatch 1592611249.00085.map 1592611249.00012.mismatch 1592611249.00146.unmapped 1592611249.00089.2.fastq 1592611249.00118.1.bfq 1592611249.00069.1.bfq 1592611249.00042.2.fastq 1592611249.00006.1.fastq 1592611249.00101.mismatch 1592611249.00065.map 1592611249.00159.unmapped 1592611249.00154.1.bfq 1592611249.00108.2.fastq 1592611249.00024.2.fastq 1592611249.00119.2.bfq 1592611249.00065.1.bfq 1592611249.00014.map 1592611249.00133.unmapped 1592611249.00000.unmapped 1592611249.00122.1.fastq 1592611249.00003.1.bfq 1592611249.00112.2.bfq 1592611249.00030.1.bfq 1592611249.00030.2.bfq 1592611249.00158.map 1592611249.00054.mismatch 1592611249.00020.mismatch 1592611249.00018.2.bfq 1592611249.00081.unmapped 1592611249.00112.mismatch 1592611249.00091.unmapped 1592611249.00121.mismatch 1592611249.00044.unmapped 1592611249.00087.2.fastq 1592611249.00067.2.fastq 1592611249.00093.1.bfq 1592611249.00018.mismatch 1592611249.00132.unmapped 1592611249.00128.map 1592611249.00155.2.fastq 1592611249.00142.2.fastq 1592611249.00033.1.bfq 1592611249.00124.2.fastq 1592611249.00050.unmapped 1592611249.00058.map 1592611249.00037.map 1592611249.00045.2.bfq 1592611249.00001.unmapped 1592611249.00100.unmapped 1592611249.00103.1.bfq 1592611249.00022.2.bfq 1592611249.00058.2.fastq 1592611249.00031.1.bfq 1592611249.00013.1.bfq 1592611249.00066.mismatch 1592611249.00048.1.fastq 1592611249.00109.2.fastq 1592611249.00118.2.bfq 1592611249.00110.mismatch 1592611249.00022.mismatch 1592611249.00033.map 1592611249.00086.unmapped 1592611249.00006.2.fastq 1592611249.00028.unmapped 1592611249.00140.2.fastq 1592611249.00147.1.fastq 1592611249.00026.unmapped 1592611249.00060.2.fastq 1592611249.00118.mismatch 1592611249.00154.2.bfq 1592611249.00091.1.fastq 1592611249.00068.1.bfq 1592611249.00019.1.bfq 1592611249.00000.2.fastq 1592611249.00052.2.bfq 1592611249.00043.1.fastq 1592611249.00154.mismatch 1592611249.00004.map 1592611249.00003.2.bfq 1592611249.00040.map 1592611249.00101.unmapped 1592611249.00011.unmapped 1592611249.00110.unmapped 1592611249.00137.map 1592611249.00073.2.bfq 1592611249.00034.1.fastq 1592611249.00003.mismatch 1592611249.00056.map 1592611249.00157.unmapped 1592611249.00138.1.fastq 1592611249.00073.mismatch 1592611249.00120.mismatch 1592611249.00093.2.bfq 1592611249.00122.mismatch 1592611249.00083.1.fastq 1592611249.00029.1.fastq 1592611249.00145.mismatch 1592611249.00072.unmapped 1592611249.00082.unmapped 1592611249.00061.2.fastq 1592611249.00093.mismatch 1592611249.00092.unmapped 1592611249.00066.1.fastq 1592611249.00020.2.bfq 1592611249.00116.1.fastq 1592611249.00104.map 1592611249.00103.2.bfq 1592611249.00002.unmapped 1592611249.00096.2.bfq 1592611249.00020.unmapped 1592611249.00111.unmapped 1592611249.00036.unmapped 1592611249.00038.2.fastq 1592611249.00141.2.bfq 1592611249.00130.2.bfq 1592611249.00074.map 1592611249.00084.map 1592611249.00032.1.bfq 1592611249.00098.unmapped 1592611249.00031.mismatch 1592611249.00134.1.fastq 1592611249.00068.map 1592611249.00130.mismatch 1592611249.00039.2.fastq 1592611249.00055.mismatch 1592611249.00085.1.bfq 1592611249.00155.1.fastq 1592611249.00107.mismatch 1592611249.00129.1.fastq 1592611249.00127.mismatch 1592611249.00021.mismatch 1592611249.00114.map 1592611249.00117.unmapped 1592611249.00113.1.bfq 1592611249.00158.1.fastq 1592611249.00043.2.fastq 1592611249.00008.mismatch 1592611249.00047.1.fastq 1592611249.00099.mismatch 1592611249.00156.map
make: Leaving directory `/data/maqgene/work'
make: Entering directory `/data/maqgene/work'
# Tue Nov 29 10:46:08 GMT 2011: Cleaning intermediate data ...
/usr/bin/mysql  -umaqgene -Dmaqgenedb  --local-infile -e "drop table if exists 1966694035_snps,1966694035_rel,1966694035_masked_ids,1966694035_rel_intergenic,1966694035_intergenic_assoc,1966694035_offsets,1966694035_codons,1966694035_marked,1966694035_combined,2192903831_pileup"
rm -f 1966694035_snps 1966694035_rel 1966694035_masked_ids 1966694035_rel_intergenic 1966694035_intergenic_assoc 1966694035_offsets 1966694035_codons 1966694035_marked 1966694035_combined 2192903831_pileup
make: Leaving directory `/data/maqgene/work'