ID chr.segment start.segment end.segment qtl_type chr.full_qtl start.full_qtl end.full_qtl pval.full_qtl min_from_trans_start max_from_trans_end min_to_trans_start max_to_trans_end total_number_of_trans_reads mean_percentage_trans_reads perc_conf_interval_start perc_conf_interval_end perc_p_value num_lines_with_trans lines_conf_interval_start lines_conf_interval_end lines_p_value 5_hi.0_23523539_19_4 Chr5 23523539 23529846 cis Chr5 21351598 23518539 54.88035 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_hi.0_23523539_19_4 Chr5 23523539 23529846 cis Chr5 23534846 26333380 54.88035 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_hi.0_23523539_19_4 Chr5 23523539 23529846 trans Chr5 20430360 20942324 8.596297 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_hi.0_23523539_19_4 Chr5 23523539 23529846 trans Chr5 21121480 21302940 7.082359 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_tsu.0_13770649_13_8 Chr5 13770649 14094464 cis Chr5 5666136 13765649 47.61895 13780031 14088440 6249554 13764567 7 0.0274017536008 0.0 0.123719910369 0.208791208791 5 0.0 9.0 0.163836163836 5_tsu.0_13770649_13_8 Chr5 13770649 14094464 cis Chr5 14099464 15092715 47.61895 13812238 14092653 14101115 15052663 6 0.0195448816417 0.0 0.10301362144 0.28971028971 6 0.0 9.0 0.0989010989011 5_tsu.0_13770649_13_8 Chr5 13770649 14094464 trans Chr5 15328462 17258012 19.86233 13786738 14066288 15504979 17038986 19 0.0407940184325 0.0 0.109989775407 0.117882117882 9 0.0 9.0 0.031968031968 5_tsu.0_13770649_13_8 Chr5 13770649 14094464 trans Chr5 5279639 5665738 11.33092 13852944 13931366 5633111 5645032 1 0.00213675213675 0.0 0.0989680146547 0.888111888112 1 0.0 9.0 0.888111888112 4_oy.0_4571011_12_3 Chr4 4571011 4635113 overlap Chr4 4590558 4604683 18.41389 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_oy.0_4571011_12_3 Chr4 4571011 4635113 overlap Chr4 4627051 4630142 15.03823 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_oy.0_4571011_12_3 Chr4 4571011 4635113 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_oy.0_1337447_10_1 Chr2 1337447 1448608 cis Chr2 584455 1379823 11.38979 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_oy.0_1337447_10_1 Chr2 1337447 1448608 cis Chr2 1403945 1568117 11.17861 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_oy.0_1337447_10_1 Chr2 1337447 1448608 overlap Chr2 1387427 1392457 10.36184 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_17992357_12_9 Chr4 17992357 18213300 cis Chr4 16769443 17987357 39.3055 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_17992357_12_9 Chr4 17992357 18213300 cis Chr4 18218300 18519040 39.3055 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_17992357_12_9 Chr4 17992357 18213300 trans Chr4 12147716 16645889 11.85598 18053446 18202912 16574041 16609538 1 0.0166666666667 0.0 0.0908357946246 0.390609390609 1 0.0 7.0 0.803196803197 4_rsch.4_17992357_12_9 Chr4 17992357 18213300 trans Chr2 12329618 13368725 9.85001 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_14454399_36_12 Chr3 14454399 14552351 overlap Chr3 14471552 14532767 19.21823 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_14454399_36_12 Chr3 14454399 14552351 trans Chr4 1324082 1380038 7.256574 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_14454399_36_12 Chr3 14454399 14552351 overlap Chr3 14534635 14534635 6.953823 0 0 0 0 0 0 0 inf 1 0 0 inf 1 5_bur.0_20299561_11_6 Chr5 20299561 20419703 cis Chr5 19521014 20294561 62.06938 20323997 20381077 19863363 20044076 1 0.00185528756957 0.0 0.1365355077 0.8001998002 1 0.0 8.0 0.8001998002 5_bur.0_20299561_11_6 Chr5 20299561 20419703 cis Chr5 20424703 21878711 62.06938 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_bur.0_20299561_11_6 Chr5 20299561 20419703 trans Chr5 17930295 18890885 48.36747 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_bur.0_20299561_11_6 Chr5 20299561 20419703 trans Chr5 17756950 17929181 33.36303 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_4572469_13_1 Chr4 4572469 4715788 overlap Chr4 4626755 4635918 47.30492 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_4572469_13_1 Chr4 4572469 4715788 overlap Chr4 4636605 4637056 10.32206 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_4572469_13_1 Chr4 4572469 4715788 overlap Chr4 4625885 4625885 6.717666 0 0 0 0 0 0 0 inf 1 0 0 inf 1 5_ws.0_15098530_11_1 Chr5 15098530 15217844 overlap Chr5 15108607 15198900 54.60733 0 0 0 0 0 0 0 inf 1 0 0 inf 1 5_ws.0_15098530_11_1 Chr5 15098530 15217844 trans Chr5 20808019 20808987 10.4053 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_ws.0_15098530_11_1 Chr5 15098530 15217844 trans Chr5 13773920 13792294 7.683007 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_wil.2_12662086_12_6 Chr3 12662086 12766290 trans Chr4 978 4315339 20.39977 12672034 12766727 1198710 4306932 11 0.0651502291077 0.0 0.106506381557 0.0629370629371 7 0.0 6.025 0.025974025974 3_wil.2_12662086_12_6 Chr3 12662086 12766290 trans Chr4 4766203 5923592 18.4891 12669563 12760588 4985838 5889331 2 0.0265151515152 0.0 0.0994113210022 0.184815184815 2 0.0 5.0 0.278721278721 3_wil.2_12662086_12_6 Chr3 12662086 12766290 trans Chr1 9470474 9888158 15.46631 12729479 12729530 9708166 9708217 1 0.0454545454545 0.0 0.0311260330579 0.024975024975 1 0.0 1.0 0.027972027972 3_can.0_14443175_11_7 Chr3 14443175 14528470 overlap Chr3 14494450 14511874 15.68942 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_can.0_14443175_11_7 Chr3 14443175 14528470 trans Chr4 3040818 3943122 11.19259 14443822 14505005 3127912 3886778 12 0.110025429116 0.0 0.119789270676 0.02997002997 9 0.0 7.0 0.010989010989 3_can.0_14443175_11_7 Chr3 14443175 14528470 trans Chr4 10453682 10453861 10.28973 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_hi.0_14864223_11_2 Chr5 14864223 15112049 overlap Chr5 14881776 15107666 50.54445 0 0 0 0 0 0 0 inf 1 0 0 inf 1 5_hi.0_14864223_11_2 Chr5 14864223 15112049 trans Chr5 8945484 14068970 25.2178 14865636 15080477 8958817 14064107 8 0.02475486068 0.0 0.112930462005 0.294705294705 7 0.0 8.0 0.0519480519481 5_hi.0_14864223_11_2 Chr5 14864223 15112049 trans Chr5 15328786 16843082 25.12443 15003776 15048382 15518572 16705762 1 0.00275482093664 0.0 0.117744390151 0.836163836164 1 0.0 8.0 0.838161838162 3_ler.0_21693981_10_8 Chr3 21693981 21874301 trans Chr3 18085787 19850282 48.83033 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ler.0_21693981_10_8 Chr3 21693981 21874301 trans Chr3 20223904 21683372 47.19933 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ler.0_21693981_10_8 Chr3 21693981 21874301 trans Chr3 22467222 23371191 27.90511 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ws.0_4196767_32_28 Chr4 4196767 4333198 cis Chr4 176373 4191767 47.43701 4200369 4332411 212007 4158914 23 0.0789506021208 0.0 0.118247078902 0.0539460539461 15 0.0 20.0 0.0519480519481 4_ws.0_4196767_32_28 Chr4 4196767 4333198 cis Chr4 4338198 4445731 47.43701 4255884 4297028 4382460 4442918 6 0.00901061432638 0.00143488103693 0.120100458521 0.602397602398 5 1.0 19.0 0.334665334665 4_ws.0_4196767_32_28 Chr4 4196767 4333198 trans Chr4 4534340 7342620 26.99441 4199588 4331445 4540788 7326957 15 0.0217152345495 0.0 0.111787574855 0.22977022977 12 0.0 19.0 0.0829170829171 4_ws.0_4196767_32_28 Chr4 4196767 4333198 trans Chr4 978 121344 10.07942 4294146 4294197 17429 17480 1 0.03125 0.0 0.041796875 0.0719280719281 1 0.0 2.0 0.10989010989 1_edi.0_26707873_14_5 Chr1 26707873 26798902 cis Chr1 26138333 26702873 189.5372 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_edi.0_26707873_14_5 Chr1 26707873 26798902 cis Chr1 26803902 29266364 189.5372 26762270 26781382 28557961 29051517 1 0.00310559006211 0.0 0.114772514408 0.707292707293 1 0.0 8.025 0.718281718282 1_edi.0_26707873_14_5 Chr1 26707873 26798902 trans Chr1 25465752 26138208 21.34187 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_edi.0_26707873_14_5 Chr1 26707873 26798902 trans Chr1 24303815 24693978 19.67003 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_oy.0_1261203_10_10 Chr2 1261203 1461134 cis Chr2 41625 1275313 33.02097 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_oy.0_1261203_10_10 Chr2 1261203 1461134 cis Chr2 1276312 2722935 29.33494 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_oy.0_1261203_10_10 Chr2 1261203 1461134 trans Chr2 3217892 4400712 21.13033 1299224 1437543 3762877 4323898 4 0.0190793650794 0.0 0.100066323479 0.256743256743 3 0.0 5.0 0.128871128871 4_zu.0_15201478_13_3 Chr4 15201478 15417469 trans Chr4 11767255 13527729 85.14774 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_zu.0_15201478_13_3 Chr4 15201478 15417469 trans Chr4 16440869 16626584 51.34661 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_zu.0_15201478_13_3 Chr4 15201478 15417469 trans Chr4 10660879 10935436 44.69709 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ws.0_9479583_12_2 Chr4 9479583 9579364 overlap Chr4 9480346 9488128 22.9104 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_ws.0_9479583_12_2 Chr4 9479583 9579364 cis Chr4 9568188 9680095 14.30405 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ws.0_9479583_12_2 Chr4 9479583 9579364 trans Chr4 8978200 9427899 13.76433 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_14444150_17_11 Chr3 14444150 14551708 overlap Chr3 14475204 14539643 29.16406 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_14444150_17_11 Chr3 14444150 14551708 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_14444150_17_11 Chr3 14444150 14551708 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_14246685_18_2 Chr3 14246685 14286771 cis Chr3 13206026 14241685 35.73432 14264331 14269523 13414024 13962994 3 0.00588903079325 0.0 0.0895926519061 0.61038961039 2 0.0 10.0 0.5004995005 3_hi.0_14246685_18_2 Chr3 14246685 14286771 cis Chr3 14291771 14402837 35.73432 14261139 14264595 14347607 14394682 1 0.00222222222222 0.0 0.10934945792 0.826173826174 1 0.0 10.0 0.833166833167 3_hi.0_14246685_18_2 Chr3 14246685 14286771 trans Chr3 14535059 17345084 22.41878 14246240 14272706 14556908 16431221 4 0.00679185254349 0.0 0.124102254428 0.592407592408 3 0.0 12.0 0.33966033966 3_hi.0_14246685_18_2 Chr3 14246685 14286771 trans Chr3 10252001 13198017 18.90715 14247750 14287217 11418826 12999302 4 0.00729850783577 0.0 0.0948953861392 0.552447552448 4 0.0 10.0 0.207792207792 3_rsch.4_14251151_21_18 Chr3 14251151 14374252 cis Chr3 9626328 14354667 78.25771 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_rsch.4_14251151_21_18 Chr3 14251151 14374252 trans Chr3 14535040 18211067 59.19318 14255093 14375176 14571171 17640416 15 0.0635344319816 0.0 0.108821967255 0.0619380619381 10 0.0 15.025 0.0889110889111 3_rsch.4_14251151_21_18 Chr3 14251151 14374252 trans Chr3 18297192 18515096 11.14143 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_can.0_18951050_10_3 Chr1 18951050 19049229 cis Chr1 17220088 18962645 25.49032 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_can.0_18951050_10_3 Chr1 18951050 19049229 cis Chr1 18971094 19049433 23.4716 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_can.0_18951050_10_3 Chr1 18951050 19049229 trans Chr1 19049696 24175327 21.96884 18962138 19050269 19049710 23762414 27 0.110299950212 0.0 0.12172432279 0.032967032967 7 0.0 6.0 0.020979020979 4_sf.2_4189543_21_20 Chr4 4189543 4332891 cis Chr4 1305395 4315023 50.3846 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_sf.2_4189543_21_20 Chr4 4189543 4332891 trans Chr4 4448822 6100477 19.97667 4190341 4331595 4450791 5980406 10 0.0377274192147 0.0 0.0951618916797 0.120879120879 9 0.0 11.0 0.0659340659341 4_sf.2_4189543_21_20 Chr4 4189543 4332891 trans Chr4 182436 1257869 14.9914 4311241 4311357 464467 617830 2 0.0555555555556 0.0 0.0739484126984 0.033966033966 2 0.0 2.0 0.03996003996 3_tsu.0_13916213_14_9 Chr3 13916213 14076466 overlap Chr3 13963300 13983576 19.72174 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_13916213_14_9 Chr3 13916213 14076466 overlap Chr3 13990591 14032513 7.556151 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_13916213_14_9 Chr3 13916213 14076466 trans Chr2 4997682 4997682 7.265191 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_oy.0_13803122_10_4 Chr3 13803122 13979579 trans Chr1 6013858 6701330 16.97454 13950952 13968043 6572312 6572665 1 0.00769230769231 0.0 0.0801229556339 0.576423576424 1 0.0 5.0 0.853146853147 3_oy.0_13803122_10_4 Chr3 13803122 13979579 trans Chr5 15053728 15055302 10.16646 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_oy.0_13803122_10_4 Chr3 13803122 13979579 trans Chr4 3727461 3729312 9.045325 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_edi.0_16476558_13_11 Chr1 16476558 16579531 overlap Chr1 16489026 16561336 35.9784 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_edi.0_16476558_13_11 Chr1 16476558 16579531 cis Chr1 16561648 16880820 10.01505 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_edi.0_16476558_13_11 Chr1 16476558 16579531 trans Chr1 16130429 16472780 9.252531 16520153 16571797 16180320 16212766 2 0.000959118666737 0.0 0.105049331868 0.787212787213 2 0.0 8.0 0.5004995005 4_tsu.0_2189638_19_18 Chr4 2189638 2417405 cis Chr4 978 2184638 124.2406 2207990 2409932 52274 2176949 4 0.00637958532695 0.0 0.111389318641 0.712287712288 1 0.0 11.0 0.901098901099 4_tsu.0_2189638_19_18 Chr4 2189638 2417405 cis Chr4 2422405 4366142 124.2406 2236216 2363194 2464271 4359559 9 0.0157304453173 0.0 0.109060794963 0.362637362637 8 0.0 11.0 0.0689310689311 4_tsu.0_2189638_19_18 Chr4 2189638 2417405 trans Chr4 4552106 7081267 83.93648 2208289 2380019 4790083 7018873 6 0.011641731384 0.0 0.135656233777 0.5004995005 5 0.0 12.0 0.204795204795 4_tsu.0_2189638_19_18 Chr4 2189638 2417405 trans Chr2 52361 56315 19.40934 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_no.0_1011_10_6 Chr4 1011 125866 cis Chr4 978 125736 31.67312 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_no.0_1011_10_6 Chr4 1011 125866 trans Chr4 126589 1612704 29.90584 77130 126913 126592 1446946 17 0.0597631298723 0.0 0.0907853581582 0.0599400599401 6 0.0 6.0 0.036963036963 4_no.0_1011_10_6 Chr4 1011 125866 trans Chr4 2330469 2782540 14.53418 50584 50763 2363262 2708411 2 0.0458333333333 0.0 0.100038078697 0.0829170829171 2 0.0 2.0 0.032967032967 4_can.0_4266742_10_9 Chr4 4266742 4589204 overlap Chr4 4318405 4574480 59.99404 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_can.0_4266742_10_9 Chr4 4266742 4589204 cis Chr4 4588726 4589755 9.734819 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_can.0_4266742_10_9 Chr4 4266742 4589204 trans Chr1 13641599 13947626 7.154875 4328375 4581261 13644576 13916693 3 0.0166533466533 0.0 0.0933316648629 0.33966033966 3 0.0 5.0 0.141858141858 5_no.0_18154917_13_6 Chr5 18154917 18210719 trans Chr5 18240283 18879610 58.65856 18182748 18182799 18300561 18300612 1 0.0208333333333 0.0 0.0833333333333 0.0679320679321 1 0.0 1.0 0.0699300699301 5_no.0_18154917_13_6 Chr5 18154917 18210719 cis Chr5 15621230 18149917 55.66243 18153998 18184151 18116877 18149730 5 0.0175972967347 0.0 0.114204940197 0.374625374625 5 0.0 8.0 0.143856143856 5_no.0_18154917_13_6 Chr5 18154917 18210719 cis Chr5 18215719 18225555 55.66243 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_no.0_18154917_13_6 Chr5 18154917 18210719 trans Chr5 19526648 21310848 26.14099 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_po.0_4595747_16_1 Chr4 4595747 4768224 overlap Chr4 4614417 4712227 34.11736 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_po.0_4595747_16_1 Chr4 4595747 4768224 trans Chr4 4253333 4253758 12.313 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_po.0_4595747_16_1 Chr4 4595747 4768224 trans Chr2 38423 38423 7.961435 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ws.0_14328742_46_35 Chr3 14328742 14540862 overlap Chr3 14340453 14507303 86.1942 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_ws.0_14328742_46_35 Chr3 14328742 14540862 overlap Chr3 14511874 14528325 8.112737 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_ws.0_14328742_46_35 Chr3 14328742 14540862 overlap Chr3 14532767 14532857 6.742604 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_mt.0_24173134_121_29 Chr1 24173134 24182065 cis Chr1 19836813 24168134 125.4571 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_mt.0_24173134_121_29 Chr1 24173134 24182065 cis Chr1 24187065 27408532 125.4571 24177115 24177166 25330725 25330776 1 0.00826446280992 0.0 0.0276810310901 0.202797202797 1 0.0 5.025 0.304695304695 1_mt.0_24173134_121_29 Chr1 24173134 24182065 trans Chr1 19608699 19809292 6.926407 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_mt.0_24173134_121_29 Chr1 24173134 24182065 trans Chr1 19586421 19590257 6.72534 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_zu.0_11433867_23_3 Chr1 11433867 11496377 cis Chr1 9200310 11428867 83.48887 11456573 11495353 9449715 11421481 5 0.00659790153757 0.0 0.107530344986 0.708291708292 4 0.0 12.025 0.322677322677 1_zu.0_11433867_23_3 Chr1 11433867 11496377 cis Chr1 11501377 13591851 83.48887 11465016 11491739 12582904 13205267 2 0.0869565217391 0.0 0.0908279240159 0.031968031968 2 0.0 12.025 0.725274725275 1_zu.0_11433867_23_3 Chr1 11433867 11496377 trans Chr1 15589038 16089994 14.49889 11452261 11452312 16011502 16011553 1 0.0217391304348 0.0 0.0434782608696 0.0649350649351 1 0.0 1.0 0.0719280719281 1_zu.0_11433867_23_3 Chr1 11433867 11496377 trans Chr1 16110232 16942740 14.14536 11493760 11493811 16723759 16723810 1 0.0434782608696 0.0 0.0434782608696 0.038961038961 1 0.0 1.0 0.0729270729271 1_mt.0_15986522_11_8 Chr1 15986522 16201051 trans Chr1 12709101 14212126 17.45087 15986786 16193506 12816913 14210518 6 0.028946810765 0.0 0.110354833207 0.202797202797 5 0.0 6.0 0.0619380619381 1_mt.0_15986522_11_8 Chr1 15986522 16201051 trans Chr1 15758595 15986158 16.59794 15985532 16158399 15763381 15986153 39 0.235533910534 0.0 0.130725171887 0.00699300699301 9 0.0 7.0 0.00999000999001 1_mt.0_15986522_11_8 Chr1 15986522 16201051 trans Chr1 15586699 15716472 15.73288 16012322 16190856 15594976 15714953 2 0.0212514757969 0.0 0.110284962322 0.292707292707 2 0.0 6.0 0.414585414585 5_hi.0_10018836_10_4 Chr5 10018836 10089502 trans Chr1 103963 103963 8.162233 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_hi.0_10018836_10_4 Chr5 10018836 10089502 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_hi.0_10018836_10_4 Chr5 10018836 10089502 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_ct.1_24175755_33_1 Chr1 24175755 24241560 cis Chr1 24172029 24182275 70.42499 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_ct.1_24175755_33_1 Chr1 24175755 24241560 cis Chr1 24183845 24386813 8.104223 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_ct.1_24175755_33_1 Chr1 24175755 24241560 trans Chr1 23785350 24168546 7.481409 24203952 24223193 24138893 24165260 4 0.00664478890285 0.0 0.0975770935855 0.734265734266 3 0.0 17.0 0.579420579421 1_rsch.4_12971010_11_7 Chr1 12971010 13213259 trans Chr1 13871539 14193518 41.23221 13057947 13057998 13905229 13905280 1 0.0909090909091 0.0 0.0606060606061 0.021978021978 1 0.0 1.0 0.043956043956 1_rsch.4_12971010_11_7 Chr1 12971010 13213259 cis Chr1 11069710 12966010 30.55974 12997055 13204101 11076613 12951280 3 0.0187105384734 0.0 0.134698060225 0.335664335664 3 0.0 8.0 0.246753246753 1_rsch.4_12971010_11_7 Chr1 12971010 13213259 cis Chr1 13218259 13733234 30.55974 13068123 13211492 13257075 13432389 1 0.00313479623824 0.0 0.10046298547 0.767232767233 1 0.0 7.0 0.768231768232 1_rsch.4_12971010_11_7 Chr1 12971010 13213259 trans Chr1 15818071 17294082 30.55974 13032250 13210900 15882137 17229198 2 0.0117776959882 0.0 0.121223011649 0.480519480519 2 0.0 7.0 0.438561438561 4_mt.0_11021976_12_1 Chr4 11021976 11208368 cis Chr4 8279506 11148048 45.03604 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_mt.0_11021976_12_1 Chr4 11021976 11208368 cis Chr4 11148268 11755745 16.58857 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_mt.0_11021976_12_1 Chr4 11021976 11208368 trans Chr4 7913215 8279013 8.546238 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ct.1_1241304_11_3 Chr4 1241304 1390878 trans Chr4 1391168 1653170 41.71588 1311157 1391924 1391168 1478869 52 0.244251320144 0.0 0.103903005976 0.00699300699301 10 0.0 6.0 0.00699300699301 4_ct.1_1241304_11_3 Chr4 1241304 1390878 trans Chr4 2411208 2614904 25.30911 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ct.1_1241304_11_3 Chr4 1241304 1390878 trans Chr4 978 1235006 25.11516 1270626 1343010 426739 1007086 2 0.0040354767184 0.0 0.116180385357 0.791208791209 2 0.0 7.0 0.458541458541 3_oy.0_13612284_17_14 Chr3 13612284 13983577 overlap Chr3 13664439 13957094 21.02586 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_oy.0_13612284_17_14 Chr3 13612284 13983577 overlap Chr3 13958172 13959530 6.085838 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_oy.0_13612284_17_14 Chr3 13612284 13983577 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_14374281_12_7 Chr3 14374281 14532707 trans Chr1 9481241 9592909 12.69408 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_14374281_12_7 Chr3 14374281 14532707 trans Chr1 6592104 6655570 11.54077 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_14374281_12_7 Chr3 14374281 14532707 trans Chr5 270391 271084 10.027 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_mt.0_19850543_12_1 Chr3 19850543 19991329 trans Chr3 16867032 19702752 237.9534 19880002 19883293 17010919 18841595 1 0.00925925925926 0.0 0.10360525648 0.589410589411 1 0.0 7.0 0.814185814186 3_mt.0_19850543_12_1 Chr3 19850543 19991329 cis Chr3 19963316 22140656 235.109 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_mt.0_19850543_12_1 Chr3 19850543 19991329 cis Chr3 19843816 19953383 233.5062 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_mt.0_17035475_14_5 Chr5 17035475 17096546 cis Chr5 16723527 17030475 71.51981 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_mt.0_17035475_14_5 Chr5 17035475 17096546 cis Chr5 17101546 17645029 71.51981 17088645 17088791 17326966 17327058 4 0.160714285714 0.0 0.0714285714286 0.00599400599401 4 0.0 2.0 0.00999000999001 5_mt.0_17035475_14_5 Chr5 17035475 17096546 trans Chr5 17755778 18167016 34.66789 17087493 17087544 17885709 17885760 1 0.0714285714286 0.0 0.0714285714286 0.036963036963 1 0.0 1.0 0.0619380619381 5_mt.0_17035475_14_5 Chr5 17035475 17096546 trans Chr5 15643009 16335502 22.11835 17043816 17043867 16031310 16031361 1 0.0357142857143 0.0 0.0479166666667 0.040959040959 1 0.0 1.0 0.0509490509491 3_tsu.0_13140729_15_8 Chr3 13140729 13213517 overlap Chr3 13203918 13212106 19.03335 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_13140729_15_8 Chr3 13140729 13213517 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_13140729_15_8 Chr3 13140729 13213517 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_17454522_24_1 Chr3 17454522 17535108 cis Chr3 16122840 17449522 57.30831 17492064 17530138 16209685 17381012 4 0.00969452915266 0.0 0.117857661224 0.583416583417 4 0.0 15.025 0.42957042957 3_bur.0_17454522_24_1 Chr3 17454522 17535108 cis Chr3 17540108 18978676 57.30831 17477677 17477728 18358865 18358916 1 0.0208333333333 0.0 0.0555555555556 0.0869130869131 1 0.0 2.0 0.0969030969031 3_bur.0_17454522_24_1 Chr3 17454522 17535108 trans Chr3 16038336 16109030 7.945672 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_17454522_24_1 Chr3 17454522 17535108 trans Chr5 16997342 17210640 7.752436 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_hi.0_4504316_16_12 Chr4 4504316 4614412 trans Chr2 1827628 6716612 18.13895 4504498 4613907 2106204 6555924 14 0.165397102897 0.0 0.130089532686 0.016983016983 11 0.0 9.0 0.018981018981 4_hi.0_4504316_16_12 Chr4 4504316 4614412 overlap Chr4 4595758 4604109 17.94437 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_hi.0_4504316_16_12 Chr4 4504316 4614412 overlap Chr4 4604402 4604464 14.20824 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_14274965_11_10 Chr3 14274965 14586250 overlap Chr3 14340229 14532301 59.28133 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_14274965_11_10 Chr3 14274965 14586250 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_14274965_11_10 Chr3 14274965 14586250 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_tsu.0_9879_10_4 Chr2 9879 293854 cis Chr2 1173 41926 23.03792 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_tsu.0_9879_10_4 Chr2 9879 293854 overlap Chr2 56424 57080 11.61914 0 0 0 0 0 0 0 inf 1 0 0 inf 1 2_tsu.0_9879_10_4 Chr2 9879 293854 trans Chr1 22009275 23602878 9.499513 41573 261288 22319405 22731504 3 0.0108931288032 0.0 0.136069016401 0.484515484515 3 0.0 6.0 0.190809190809 1_wil.2_18962350_14_13 Chr1 18962350 18972047 overlap Chr1 18962842 18970804 26.94121 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_wil.2_18962350_14_13 Chr1 18962350 18972047 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_wil.2_18962350_14_13 Chr1 18962350 18972047 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_4715884_11_4 Chr4 4715884 4763305 trans Chr5 14049842 14067675 15.06954 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_4715884_11_4 Chr4 4715884 4763305 trans Chr4 182432 182432 7.561657 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_4715884_11_4 Chr4 4715884 4763305 trans Chr4 194935 194935 7.457195 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_ler.0_6378068_11_10 Chr2 6378068 6799160 cis Chr2 71470 6785908 71.13339 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_ler.0_6378068_11_10 Chr2 6378068 6799160 cis Chr2 6788096 8527798 30.95298 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_ler.0_6378068_11_10 Chr2 6378068 6799160 trans Chr2 9298375 10618210 23.72782 6410714 6758117 9330598 10351381 2 0.0117647058824 0.0 0.100332939787 0.519480519481 2 0.0 6.0 0.463536463536 1_bur.0_15985622_11_11 Chr1 15985622 16113157 cis Chr1 15581912 16080255 88.24562 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_15985622_11_11 Chr1 15985622 16113157 trans Chr1 16113390 16942740 88.24562 15995080 16114206 16113392 16745795 29 0.153972427858 0.0 0.125899923481 0.01998001998 10 0.0 7.0 0.011988011988 1_bur.0_15985622_11_11 Chr1 15985622 16113157 trans Chr1 12481225 14303701 79.63742 15985336 16114157 12602329 14210518 4 0.0139716126785 0.0 0.119509492914 0.334665334665 3 0.0 7.0 0.163836163836 4_zu.0_2584051_23_22 Chr4 2584051 2785838 cis Chr4 978 2579051 190.0369 2591187 2782937 50598 2550976 23 0.0891763948571 0.0 0.132963270463 0.038961038961 15 0.0 15.0 0.026973026973 4_zu.0_2584051_23_22 Chr4 2584051 2785838 cis Chr4 2790838 4378310 190.0369 2583999 2786794 2793717 4348786 20 0.0280727254921 0.0 0.112205797248 0.208791208791 12 0.0 15.0 0.041958041958 4_zu.0_2584051_23_22 Chr4 2584051 2785838 trans Chr4 4550735 6291338 73.73288 2593235 2779976 4579015 6215293 5 0.00859231136691 0.0 0.110608831763 0.719280719281 4 0.0 14.0 0.413586413586 4_zu.0_2584051_23_22 Chr4 2584051 2785838 trans Chr2 52366 55486 11.06083 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_po.0_9249192_11_2 Chr2 9249192 9280263 overlap Chr2 9249841 9277521 32.27585 0 0 0 0 0 0 0 inf 1 0 0 inf 1 2_po.0_9249192_11_2 Chr2 9249192 9280263 trans Chr2 9291888 10400820 11.33194 9262043 9262094 9765497 9765548 1 0.0909090909091 0.0 0.0606060606061 0.021978021978 1 0.0 1.0 0.044955044955 2_po.0_9249192_11_2 Chr2 9249192 9280263 trans Chr2 8565590 9231599 10.04826 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_14247351_11_5 Chr3 14247351 14285284 overlap Chr3 14273109 14285144 27.53541 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_14247351_11_5 Chr3 14247351 14285284 trans Chr3 21056198 23371191 24.99882 14248252 14285383 21233162 23089224 4 0.00740320051466 0.0 0.12273823269 0.589410589411 4 0.0 6.0 0.113886113886 3_tsu.0_14247351_11_5 Chr3 14247351 14285284 trans Chr3 20068242 20902076 10.01314 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_13141425_21_21 Chr3 13141425 13299223 overlap Chr3 13202284 13212768 32.5058 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_no.0_13141425_21_21 Chr3 13141425 13299223 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_13141425_21_21 Chr3 13141425 13299223 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_9479583_11_1 Chr4 9479583 9581314 overlap Chr4 9576692 9581005 23.49362 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_9479583_11_1 Chr4 9479583 9581314 trans Chr4 10359466 10423768 15.54264 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_9479583_11_1 Chr4 9479583 9581314 cis Chr4 8928831 9480346 15.38702 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_po.0_15584330_10_7 Chr1 15584330 15988533 cis Chr1 15585439 16078066 82.5622 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_po.0_15584330_10_7 Chr1 15584330 15988533 trans Chr1 12435217 14303701 73.49759 15586254 15986858 12677693 14260080 6 0.0216272422155 0.0 0.108593462576 0.25974025974 4 0.0 6.0 0.0809190809191 1_po.0_15584330_10_7 Chr1 15584330 15988533 trans Chr1 16113390 16942740 66.12316 15671679 15917110 16113621 16626183 2 0.0309523809524 0.0 0.122570026241 0.197802197802 2 0.0 6.0 0.306693306693 3_bur.0_21870955_10_10 Chr3 21870955 22048627 trans Chr3 17838473 19850282 148.2512 21943180 21943231 18265725 18265776 1 0.1 0.0 0.1 0.027972027972 1 0.0 1.0 0.047952047952 3_bur.0_21870955_10_10 Chr3 21870955 22048627 cis Chr3 19995870 21865955 118.3845 22043806 22043857 20271779 20271830 1 0.1 0.0 0.05 0.018981018981 1 0.0 1.0 0.03996003996 3_bur.0_21870955_10_10 Chr3 21870955 22048627 cis Chr3 22053627 22349052 118.3845 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_21870955_10_10 Chr3 21870955 22048627 trans Chr3 22466444 23371191 28.65756 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_wu.0_12716155_21_1 Chr5 12716155 12792817 cis Chr5 8186738 12711155 50.93298 12715376 12793859 8440572 12636103 22 0.0406299454521 0.0 0.12756107519 0.128871128871 12 0.0 13.0 0.03996003996 5_wu.0_12716155_21_1 Chr5 12716155 12792817 cis Chr5 12797817 17756950 50.93298 12716338 12792151 12926448 16931889 7 0.00811438574351 0.0 0.132171243948 0.707292707293 6 0.0 13.0 0.170829170829 5_wu.0_12716155_21_1 Chr5 12716155 12792817 trans Chr5 18210729 18778114 8.525094 12733384 12733435 18520921 18520972 1 0.0238095238095 0.0 0.0476984126984 0.0769230769231 1 0.0 2.0 0.0819180819181 5_wu.0_12716155_21_1 Chr5 12716155 12792817 trans Chr5 17758406 18158589 7.799069 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_6907428_12_2 Chr4 6907428 7103401 cis Chr4 5789131 6902428 67.34992 6908438 7034339 6065488 6723589 2 0.0168067226891 0.0 0.155173776774 0.438561438561 2 0.0 8.0 0.613386613387 4_wu.0_6907428_12_2 Chr4 6907428 7103401 cis Chr4 7108401 8450259 67.34992 6943929 7081488 7273655 8421434 7 0.0264249508845 0.0 0.117670579265 0.238761238761 7 0.0 8.0 0.044955044955 4_wu.0_6907428_12_2 Chr4 6907428 7103401 trans Chr4 5123342 5779401 19.015 6974531 7034020 5360986 5645081 2 0.0119565217391 0.0 0.118120340434 0.527472527473 2 0.0 8.0 0.566433566434 4_wu.0_6907428_12_2 Chr4 6907428 7103401 trans Chr4 9585571 10161502 16.93625 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_ct.1_26118057_11_1 Chr1 26118057 26214654 cis Chr1 24695005 26113057 47.03917 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_ct.1_26118057_11_1 Chr1 26118057 26214654 cis Chr1 26219654 26921601 47.03917 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_ct.1_26118057_11_1 Chr1 26118057 26214654 trans Chr1 26921629 29858357 30.31737 26196065 26196116 28337472 28337523 1 0.0454545454545 0.0 0.0458333333333 0.02997002997 1 0.0 1.0 0.034965034965 1_ct.1_26118057_11_1 Chr1 26118057 26214654 trans Chr1 24549269 24694485 12.03273 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ler.0_14486922_10_5 Chr3 14486922 14552165 overlap Chr3 14498048 14534452 24.83343 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_ler.0_14486922_10_5 Chr3 14486922 14552165 trans Chr1 8352744 9115133 12.61001 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ler.0_14486922_10_5 Chr3 14486922 14552165 trans Chr1 15536209 16460678 11.73635 14489133 14550947 15576568 16396719 4 0.0299465240642 0.0 0.10930595198 0.208791208791 2 0.0 6.0 0.433566433566 3_rsch.4_14475909_10_2 Chr3 14475909 14541569 overlap Chr3 14476068 14534078 39.53362 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_rsch.4_14475909_10_2 Chr3 14475909 14541569 trans Chr2 5944392 5985516 12.26734 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_rsch.4_14475909_10_2 Chr3 14475909 14541569 trans Chr4 10398807 10423768 7.475921 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_ler.0_8378482_43_41 Chr5 8378482 8451217 overlap Chr5 8448428 8451180 51.3141 0 0 0 0 0 0 0 inf 1 0 0 inf 1 5_ler.0_8378482_43_41 Chr5 8378482 8451217 trans Chr1 12448569 16911960 15.83202 8388489 8451267 12621113 16598162 37 0.00513977707686 0.00244727697351 0.103353473755 0.899100899101 22 1.0 23.0 0.033966033966 5_ler.0_8378482_43_41 Chr5 8378482 8451217 overlap Chr5 8445839 8445839 7.81316 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_kn.0_18962127_12_9 Chr1 18962127 18970324 overlap Chr1 18962127 18967659 22.88752 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_kn.0_18962127_12_9 Chr1 18962127 18970324 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_kn.0_18962127_12_9 Chr1 18962127 18970324 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_sf.2_19024164_10_1 Chr1 19024164 19081523 cis Chr1 17214782 19019164 31.40417 19030591 19041195 17476439 18971167 1 0.004 0.0 0.121437089751 0.797202797203 1 0.0 6.0 0.809190809191 1_sf.2_19024164_10_1 Chr1 19024164 19081523 cis Chr1 19086523 24175253 31.40417 19027002 19046705 19237274 20679089 1 0.0047619047619 0.0 0.117599664148 0.754245754246 1 0.0 7.0 0.783216783217 1_sf.2_19024164_10_1 Chr1 19024164 19081523 trans Chr5 22288679 22360369 11.36303 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_sf.2_19024164_10_1 Chr1 19024164 19081523 trans Chr4 11765871 11766028 9.333848 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_11966690_11_2 Chr4 11966690 12118544 cis Chr4 11440394 11961690 230.2479 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_11966690_11_2 Chr4 11966690 12118544 cis Chr4 12123544 13527729 230.2479 12117766 12117817 12148586 12148637 1 0.0909090909091 0.0 0.0613636363636 0.025974025974 1 0.0 1.0 0.033966033966 4_edi.0_11966690_11_2 Chr4 11966690 12118544 trans Chr4 10660879 10935436 93.06443 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_11966690_11_2 Chr4 11966690 12118544 trans Chr4 10423617 10582473 55.53639 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_po.0_5621237_15_4 Chr2 5621237 5989439 cis Chr2 72719 5943875 121.0921 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_po.0_5621237_15_4 Chr2 5621237 5989439 trans Chr2 6180702 8087426 56.04784 5622140 5971486 6190271 7854847 9 0.0285766945855 0.0 0.109455520584 0.182817182817 6 0.0 8.0 0.0829170829171 2_po.0_5621237_15_4 Chr2 5621237 5989439 trans Chr2 5989647 6177312 7.810919 5731530 5990487 5989650 6124600 51 0.212655502468 0.0 0.112245386571 0.00899100899101 13 0.0 9.0 0.011988011988 2_mt.0_6716905_10_6 Chr2 6716905 6729453 overlap Chr2 6718317 6725841 42.4058 0 0 0 0 0 0 0 inf 1 0 0 inf 1 2_mt.0_6716905_10_6 Chr2 6716905 6729453 trans Chr3 13202124 13204296 6.884009 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_mt.0_6716905_10_6 Chr2 6716905 6729453 trans Chr3 11196940 11238031 6.526046 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_4712292_49_26 Chr4 4712292 4782538 overlap Chr4 4760214 4768356 39.55334 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_4712292_49_26 Chr4 4712292 4782538 trans Chr2 1978499 5104464 8.228328 4711951 4782124 2052065 5104371 55 0.00954946263799 0.00215930983922 0.097084851445 0.653346653347 26 1.0 26.025 0.033966033966 4_wu.0_4712292_49_26 Chr4 4712292 4782538 trans Chr2 5238111 5430389 7.520755 4716968 4779189 5241863 5380214 12 0.0260721134332 0.00232187193059 0.0996354414882 0.197802197802 10 2.0 28.0 0.231768231768 3_edi.0_1429685_14_7 Chr3 1429685 1456264 cis Chr3 98 1424685 50.75274 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_edi.0_1429685_14_7 Chr3 1429685 1456264 cis Chr3 1461264 7911530 50.75274 1444900 1448865 1549686 7274739 2 0.00736961451247 0.0 0.0949606735735 0.59040959041 2 0.0 9.0 0.486513486513 3_edi.0_1429685_14_7 Chr3 1429685 1456264 trans Chr3 8198146 8714889 9.735919 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_edi.0_1429685_14_7 Chr3 1429685 1456264 trans Chr3 7944702 7997918 7.145382 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_sf.2_26921629_26_7 Chr1 26921629 26923228 cis Chr1 24181436 26916629 180.5699 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_sf.2_26921629_26_7 Chr1 26921629 26923228 cis Chr1 26928228 30393001 180.5699 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_sf.2_26921629_26_7 Chr1 26921629 26923228 trans Chr1 23653574 24172153 9.019642 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_sf.2_26921629_26_7 Chr1 26921629 26923228 trans Chr1 22477992 22627566 7.112926 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_4699956_12_8 Chr4 4699956 4781195 overlap Chr4 4739069 4768617 44.27315 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_4699956_12_8 Chr4 4699956 4781195 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_4699956_12_8 Chr4 4699956 4781195 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_sf.2_1025_13_6 Chr4 1025 126052 cis Chr4 978 -3975 101.1984 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_sf.2_1025_13_6 Chr4 1025 126052 cis Chr4 131052 126057 101.1984 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_sf.2_1025_13_6 Chr4 1025 126052 trans Chr4 130641 1463256 24.5996 35441 124995 660412 691588 1 0.003663003663 0.0 0.109073480841 0.834165834166 1 0.0 7.0 0.841158841159 4_sf.2_1025_13_6 Chr4 1025 126052 trans Chr4 128432 128489 10.21882 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ler.0_4489862_10_5 Chr4 4489862 4587621 overlap Chr4 4523244 4571011 8.683446 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_ler.0_4489862_10_5 Chr4 4489862 4587621 trans Chr4 11766028 11766028 8.254649 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ler.0_4489862_10_5 Chr4 4489862 4587621 trans Chr3 21866749 21873661 7.298414 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wil.2_4288786_17_15 Chr4 4288786 4377333 trans Chr4 4604382 5579463 24.74484 4289718 4373014 4730074 5567432 10 0.00917698079636 0.0 0.130108684213 0.643356643357 6 0.0 11.0 0.141858141858 4_wil.2_4288786_17_15 Chr4 4288786 4377333 cis Chr4 1679257 4319671 23.90267 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wil.2_4288786_17_15 Chr4 4288786 4377333 trans Chr4 1261675 1653929 10.85017 4309874 4311512 1540771 1541301 10 0.00760653994819 0.0 0.0955657909628 0.555444555445 7 0.0 7.0 0.034965034965 4_hi.0_18209079_11_4 Chr4 18209079 18412791 cis Chr4 18182077 18204079 38.48946 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_hi.0_18209079_11_4 Chr4 18209079 18412791 cis Chr4 18417791 18519040 38.48946 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_hi.0_18209079_11_4 Chr4 18209079 18412791 trans Chr4 17141068 18009184 25.09139 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_hi.0_18209079_11_4 Chr4 18209079 18412791 trans Chr4 12147601 16645889 14.56825 18232443 18268459 12809166 16055123 5 0.0206193806194 0.0 0.11094652215 0.333666333666 3 0.0 7.0 0.232767232767 1_no.0_15651990_14_12 Chr1 15651990 15758689 overlap Chr1 15662233 15747940 18.43229 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_no.0_15651990_14_12 Chr1 15651990 15758689 trans Chr2 5511144 8528873 17.9758 15682283 15754768 5577700 7692210 2 0.107142857143 0.0 0.106106351851 0.025974025974 2 0.0 9.0 0.549450549451 1_no.0_15651990_14_12 Chr1 15651990 15758689 trans Chr2 8983613 9566083 10.53614 15663474 15740531 9025943 9313029 1 0.00396825396825 0.0 0.100078054088 0.792207792208 1 0.0 8.025 0.827172827173 4_wu.0_2393103_22_8 Chr4 2393103 2495982 cis Chr4 978 2388103 143.0829 2407232 2464322 2176898 2380206 12 0.0292002036733 0.0 0.115426070526 0.175824175824 8 0.0 12.0 0.0949050949051 4_wu.0_2393103_22_8 Chr4 2393103 2495982 cis Chr4 2500982 7081255 143.0829 2430808 2469465 2578488 6985214 3 0.00803571428571 0.0 0.108820130779 0.669330669331 3 0.0 13.0 0.526473526474 4_wu.0_2393103_22_8 Chr4 2393103 2495982 trans Chr4 7081793 7143890 11.45939 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_2393103_22_8 Chr4 2393103 2495982 trans Chr2 52366 55486 9.758598 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_14328742_29_17 Chr3 14328742 14540187 overlap Chr3 14340229 14524563 49.23725 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_14328742_29_17 Chr3 14328742 14540187 trans Chr4 713659 713710 7.001989 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_14328742_29_17 Chr3 14328742 14540187 overlap Chr3 14528325 14528325 6.016574 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_4588628_24_15 Chr4 4588628 4741601 overlap Chr4 4606735 4712292 32.97482 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_4588628_24_15 Chr4 4588628 4741601 cis Chr4 4740277 4763095 9.627244 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_4588628_24_15 Chr4 4588628 4741601 trans Chr4 1245029 1303649 9.611357 4663645 4738840 1287732 1288044 2 0.00438034188034 0.00157232704403 0.0621782529749 0.72027972028 2 1.0 12.0 0.61038961039 4_wu.0_4550735_12_9 Chr4 4550735 4627281 overlap Chr4 4587607 4606058 10.04313 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_4550735_12_9 Chr4 4550735 4627281 trans Chr4 528694 714731 9.704518 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_4550735_12_9 Chr4 4550735 4627281 trans Chr4 1458275 1460183 9.498487 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_18962190_10_4 Chr1 18962190 19049695 cis Chr1 18309921 19049234 19.44516 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_18962190_10_4 Chr1 18962190 19049695 trans Chr1 19050522 21038305 11.98491 18998382 19050625 19050522 20278196 7 0.0394997986893 0.0 0.134632015494 0.132867132867 6 0.0 6.0 0.026973026973 1_bur.0_18962190_10_4 Chr1 18962190 19049695 trans Chr4 8634469 8645372 9.963048 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_14303544_24_15 Chr3 14303544 14475356 overlap Chr3 14340805 14438950 26.58509 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_14303544_24_15 Chr3 14303544 14475356 trans Chr3 14255728 14259888 6.813877 14455236 14461517 14257972 14258808 2 0.00330132052821 0.0010338998538 0.0853022079503 0.86013986014 2 1.0 15.0 0.799200799201 3_tsu.0_14303544_24_15 Chr3 14303544 14475356 trans Chr3 14284296 14284644 6.286853 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_bur.0_12680497_14_2 Chr5 12680497 12786242 cis Chr5 12229336 12692928 18.03814 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_bur.0_12680497_14_2 Chr5 12680497 12786242 overlap Chr5 12744965 12763281 11.14575 0 0 0 0 0 0 0 inf 1 0 0 inf 1 5_bur.0_12680497_14_2 Chr5 12680497 12786242 trans Chr5 17663145 17754916 10.78634 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_bur.0_1383644_16_6 Chr2 1383644 1392752 cis Chr2 627041 1378644 92.75768 1383582 1393618 896282 1038670 3 0.0167297979798 0.0 0.105328328744 0.388611388611 3 0.0 10.0 0.424575424575 2_bur.0_1383644_16_6 Chr2 1383644 1392752 cis Chr2 1397752 1618413 92.75768 1391988 1392039 1614762 1614813 1 0.03125 0.0 0.0625 0.0669330669331 1 0.0 1.0 0.0749250749251 2_bur.0_1383644_16_6 Chr2 1383644 1392752 trans Chr4 16632369 16632369 8.646579 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_bur.0_1383644_16_6 Chr2 1383644 1392752 trans Chr2 1934180 2069878 6.964311 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_14238624_13_10 Chr3 14238624 14284644 trans Chr3 12785193 13955473 49.19243 14237905 14270306 12996701 13947121 5 0.010949517534 0.0 0.115969271 0.523476523477 4 0.0 7.025 0.147852147852 3_no.0_14238624_13_10 Chr3 14238624 14284644 cis Chr3 14255403 17035376 39.46996 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_14238624_13_10 Chr3 14238624 14284644 cis Chr3 13980619 14245383 36.03283 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_tsu.0_10018836_16_9 Chr5 10018836 10087202 overlap Chr5 10028302 10077106 25.968 0 0 0 0 0 0 0 inf 1 0 0 inf 1 5_tsu.0_10018836_16_9 Chr5 10018836 10087202 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_tsu.0_10018836_16_9 Chr5 10018836 10087202 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_can.0_3724275_14_8 Chr4 3724275 3729322 cis Chr4 3722888 3719275 71.51981 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_can.0_3724275_14_8 Chr4 3724275 3729322 cis Chr4 3734322 3729614 71.51981 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_can.0_3724275_14_8 Chr4 3724275 3729322 trans Chr2 689645 7327479 33.81608 3725820 3729321 1108309 6461641 18 0.0333203883975 0.0 0.136621162086 0.197802197802 9 0.0 9.0 0.036963036963 4_can.0_3724275_14_8 Chr4 3724275 3729322 trans Chr2 1173 182250 8.478676 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_wil.2_14444678_20_6 Chr3 14444678 14539826 overlap Chr3 14484545 14532971 23.26309 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_wil.2_14444678_20_6 Chr3 14444678 14539826 trans Chr4 133852 4314689 21.24213 14444031 14540818 1549538 4295115 28 0.0926506132756 0.0 0.12548343164 0.038961038961 15 0.0 13.0 0.017982017982 3_wil.2_14444678_20_6 Chr3 14444678 14539826 trans Chr4 4767258 6253391 19.60739 14444694 14538129 4780054 6209142 5 0.0445238095238 0.0 0.103306157852 0.0939060939061 5 0.0 12.0 0.208791208791 4_po.0_2414277_20_2 Chr4 2414277 2617691 cis Chr4 978 2409277 141.9313 2464271 2617054 606899 2342319 14 0.0242599640631 0.0 0.11784557917 0.257742257742 9 0.0 12.0 0.0699300699301 4_po.0_2414277_20_2 Chr4 2414277 2617691 cis Chr4 2622691 4367511 141.9313 2469414 2613801 2649786 4348786 3 0.00927272727273 0.0 0.102829332102 0.606393606394 3 0.0 12.0 0.503496503497 4_po.0_2414277_20_2 Chr4 2414277 2617691 trans Chr4 4550735 7081255 95.41578 2430808 2613711 4645559 6985214 2 0.0375 0.0 0.13321494425 0.147852147852 2 0.0 14.0 0.733266733267 4_po.0_2414277_20_2 Chr4 2414277 2617691 trans Chr2 52366 55486 11.41061 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_hi.0_6145286_18_13 Chr2 6145286 6393882 cis Chr2 6174916 8451105 64.27178 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_hi.0_6145286_18_13 Chr2 6145286 6393882 trans Chr2 2305758 4785297 36.45444 6153577 6390597 2306229 4751296 6 0.124202957536 0.0 0.0968945276271 0.016983016983 5 0.0 11.0 0.171828171828 2_hi.0_6145286_18_13 Chr2 6145286 6393882 trans Chr2 5006039 5952810 27.64973 6177356 6389721 5015772 5824293 7 0.0231477586911 0.0 0.120753990441 0.242757242757 6 0.0 11.0 0.13986013986 2_po.0_9879_28_7 Chr2 9879 72727 cis Chr2 1173 68063 60.62478 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_po.0_9879_28_7 Chr2 9879 72727 trans Chr4 506463 6714903 56.61946 9097 72734 1543508 6535825 33 0.00165952301387 0.0 0.109401897319 0.956043956044 16 0.0 17.0 0.036963036963 2_po.0_9879_28_7 Chr2 9879 72727 trans Chr4 6728727 7230125 13.16701 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_can.0_14285354_18_16 Chr3 14285354 14538449 overlap Chr3 14326765 14522311 79.77266 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_can.0_14285354_18_16 Chr3 14285354 14538449 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_can.0_14285354_18_16 Chr3 14285354 14538449 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_hi.0_9483855_19_16 Chr4 9483855 9580501 cis Chr4 7784839 9478855 47.47193 9519245 9556098 8319251 9054759 1 0.00478468899522 0.0 0.119402917 0.846153846154 1 0.0 11.0 0.917082917083 4_hi.0_9483855_19_16 Chr4 9483855 9580501 cis Chr4 9585501 11520649 47.47193 9483717 9561718 10627067 10923054 1 0.00404858299595 0.0 0.106824565008 0.845154845155 1 0.0 11.0 0.912087912088 4_hi.0_9483855_19_16 Chr4 9483855 9580501 trans Chr4 4721893 4722659 9.125621 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_hi.0_9483855_19_16 Chr4 9483855 9580501 trans Chr4 4720602 4721762 7.003105 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wil.2_4317214_12_8 Chr4 4317214 4571168 overlap Chr4 4353163 4504288 16.13113 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_wil.2_4317214_12_8 Chr4 4317214 4571168 overlap Chr4 4504346 4504354 8.707551 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_wil.2_4317214_12_8 Chr4 4317214 4571168 overlap Chr4 4504363 4504363 8.031171 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_can.0_4595661_10_7 Chr4 4595661 4685479 overlap Chr4 4617840 4634606 35.89998 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_can.0_4595661_10_7 Chr4 4595661 4685479 trans Chr2 16686900 16686937 10.45398 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_can.0_4595661_10_7 Chr4 4595661 4685479 trans Chr1 5885969 6591705 7.275172 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ct.1_4591718_13_7 Chr4 4591718 4763745 overlap Chr4 4598000 4763106 47.61895 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_ct.1_4591718_13_7 Chr4 4591718 4763745 trans Chr4 4768520 6721900 25.50046 4599150 4759811 4778600 6531773 8 0.025733098508 0.0 0.102866598265 0.21978021978 7 0.0 8.0 0.048951048951 4_ct.1_4591718_13_7 Chr4 4591718 4763745 trans Chr4 1270812 4234878 18.69816 4592623 4764183 1287893 4234617 24 0.0935216579623 0.0 0.0950257459577 0.026973026973 10 0.0 8.0 0.013986013986 5_po.0_8409069_87_8 Chr5 8409069 8488878 overlap Chr5 8439267 8451240 120.4531 0 0 0 0 0 0 0 inf 1 0 0 inf 1 5_po.0_8409069_87_8 Chr5 8409069 8488878 trans Chr1 11147801 18962754 49.2317 8410840 8488502 11472729 18833063 94 0.00473692024558 0.00370220533375 0.131462827387 0.949050949051 51 4.0 57.0 0.034965034965 5_po.0_8409069_87_8 Chr5 8409069 8488878 trans Chr1 10930436 11146675 7.675546 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_sf.2_4504329_11_7 Chr4 4504329 4635890 overlap Chr4 4552962 4596081 18.25709 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_sf.2_4504329_11_7 Chr4 4504329 4635890 trans Chr5 11483246 11642917 10.10463 4503565 4567079 11528639 11587850 8 0.0474450314576 0.0 0.109252193807 0.0879120879121 7 0.0 7.0 0.038961038961 4_sf.2_4504329_11_7 Chr4 4504329 4635890 trans Chr5 272102 272102 8.545232 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_4209623_25_25 Chr4 4209623 4358207 cis Chr4 151500 4204623 103.5983 4210475 4357330 464461 4162065 19 0.0916404040404 0.0 0.127152304255 0.043956043956 14 0.0 16.0 0.040959040959 4_wu.0_4209623_25_25 Chr4 4209623 4358207 cis Chr4 4363207 7768297 103.5983 4209737 4358283 4375593 6479633 16 0.0344921484201 0.0 0.132045979164 0.147852147852 13 0.0 16.0 0.045954045954 4_wu.0_4209623_25_25 Chr4 4209623 4358207 trans Chr4 129553 129553 7.095265 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_4209623_25_25 Chr4 4209623 4358207 trans Chr4 7947806 8012099 6.412716 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_tsu.0_4570950_13_5 Chr4 4570950 4642805 trans Chr4 8674620 10599945 10.69544 4633760 4636486 9404143 10427325 2 0.025 0.0 0.140968468733 0.278721278721 2 0.0 9.0 0.603396603397 4_tsu.0_4570950_13_5 Chr4 4570950 4642805 overlap Chr4 4633681 4633834 9.016178 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_tsu.0_4570950_13_5 Chr4 4570950 4642805 trans Chr4 10621629 10621630 6.032535 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_sf.2_14443842_29_15 Chr3 14443842 14539881 overlap Chr3 14519998 14531020 12.87271 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_sf.2_14443842_29_15 Chr3 14443842 14539881 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_sf.2_14443842_29_15 Chr3 14443842 14539881 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_ler.0_5928579_11_11 Chr2 5928579 6272369 cis Chr2 6207877 7159821 89.69676 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_ler.0_5928579_11_11 Chr2 5928579 6272369 trans Chr2 5542391 5915177 48.43226 5946757 6270522 5579920 5865929 8 0.0297472019111 0.0 0.0988573018809 0.211788211788 7 0.0 7.0 0.032967032967 2_ler.0_5928579_11_11 Chr2 5928579 6272369 trans Chr2 1827794 5002947 41.34342 5945288 6272412 1849118 4969218 8 0.0289877311821 0.0 0.116748447669 0.226773226773 4 0.0 7.0 0.146853146853 3_no.0_14484545_21_16 Chr3 14484545 14620672 overlap Chr3 14522522 14551916 38.46495 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_no.0_14484545_21_16 Chr3 14484545 14620672 trans Chr5 17755150 17755324 6.561121 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_14484545_21_16 Chr3 14484545 14620672 overlap Chr3 14521351 14521678 6.293015 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_ws.0_12941409_13_10 Chr3 12941409 13161942 overlap Chr3 12979893 13107060 20.96092 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_ws.0_12941409_13_10 Chr3 12941409 13161942 trans Chr4 2844565 2983457 11.00055 12946341 13122314 2852644 2979257 6 0.0819685690653 0.0 0.100451474769 0.037962037962 5 0.0 8.0 0.118881118881 3_ws.0_12941409_13_10 Chr3 12941409 13161942 trans Chr3 7882060 7900885 10.1319 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_can.0_23019131_20_2 Chr3 23019131 23019491 cis Chr3 19826026 23014131 60.83889 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_can.0_23019131_20_2 Chr3 23019131 23019491 cis Chr3 23024491 23371191 60.83889 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_can.0_23019131_20_2 Chr3 23019131 23019491 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_can.0_23019131_20_2 Chr3 23019131 23019491 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_oy.0_4699641_31_10 Chr4 4699641 4778553 overlap Chr4 4763040 4768088 44.8839 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_oy.0_4699641_31_10 Chr4 4699641 4778553 trans Chr3 13573360 13806015 9.258562 4706625 4779111 13583998 13806055 19 0.0118712933836 0.00153520522988 0.103082592561 0.522477522478 12 1.0 18.0 0.0939060939061 4_oy.0_4699641_31_10 Chr4 4699641 4778553 trans Chr3 13208806 13213030 7.820368 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ct.1_13891093_11_7 Chr3 13891093 14005267 overlap Chr3 13916050 13965194 10.70044 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_ct.1_13891093_11_7 Chr3 13891093 14005267 trans Chr4 182432 182432 8.527401 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ct.1_13891093_11_7 Chr3 13891093 14005267 trans Chr4 194935 194935 8.503252 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_sf.2_7158029_13_8 Chr2 7158029 7253306 cis Chr2 6207554 7153029 44.75793 7158452 7234361 6621436 7053331 4 0.0820512820513 0.0 0.139781385186 0.0589410589411 3 0.0 8.0 0.26973026973 2_sf.2_7158029_13_8 Chr2 7158029 7253306 cis Chr2 7258306 8422824 44.75793 7176807 7176858 8019440 8019491 1 0.0769230769231 0.0 0.0519230769231 0.024975024975 1 0.0 1.0 0.047952047952 2_sf.2_7158029_13_8 Chr2 7158029 7253306 trans Chr2 5651640 5905815 14.46161 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_sf.2_7158029_13_8 Chr2 7158029 7253306 trans Chr2 2724556 2729969 7.254938 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_14326026_13_9 Chr3 14326026 14539312 overlap Chr3 14328111 14510270 67.61949 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_14326026_13_9 Chr3 14326026 14539312 trans Chr2 6728385 7504861 34.81341 14329496 14329547 6898471 6898522 1 0.0769230769231 0.0 0.0512820512821 0.023976023976 1 0.0 1.0 0.035964035964 3_hi.0_14326026_13_9 Chr3 14326026 14539312 trans Chr2 6276144 6393521 20.3279 14473642 14473693 6329052 6329103 1 0.0769230769231 0.0 0.0512820512821 0.023976023976 1 0.0 1.0 0.03996003996 2_can.0_9251168_25_12 Chr2 9251168 9319678 cis Chr2 7213526 9246168 29.77679 9262045 9262098 7521770 7522248 2 0.0333333333333 0.0 0.04 0.0539460539461 2 0.0 2.0 0.032967032967 2_can.0_9251168_25_12 Chr2 9251168 9319678 cis Chr2 9324678 10582229 29.77679 9269647 9282168 9329291 9681019 9 0.0104929940596 0.0 0.0969669904039 0.535464535465 8 0.0 15.0 0.115884115884 2_can.0_9251168_25_12 Chr2 9251168 9319678 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_can.0_9251168_25_12 Chr2 9251168 9319678 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_kn.0_714731_18_7 Chr4 714731 823210 cis Chr4 978 709731 68.49217 764179 792906 16707 324554 2 0.00477582846004 0.0 0.101870082876 0.825174825175 2 0.0 11.0 0.747252747253 4_kn.0_714731_18_7 Chr4 714731 823210 cis Chr4 828210 1252957 68.49217 754101 823275 832811 968973 2 0.002331002331 0.0 0.104200795618 0.926073926074 2 0.0 11.0 0.776223776224 4_kn.0_714731_18_7 Chr4 714731 823210 trans Chr4 1391168 1675607 38.83524 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_kn.0_714731_18_7 Chr4 714731 823210 trans Chr4 2419084 2782540 33.98751 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ws.0_14438409_49_11 Chr3 14438409 14551935 overlap Chr3 14474884 14486026 26.18563 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_ws.0_14438409_49_11 Chr3 14438409 14551935 trans Chr3 14375077 14425640 8.526383 14440030 14552077 14406575 14422019 2 0.00151565255732 0.00252147252951 0.0827105960661 0.986013986014 2 2.0 28.0 0.982017982018 3_ws.0_14438409_49_11 Chr3 14438409 14551935 overlap Chr3 14486842 14494450 8.200173 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_oy.0_13554998_13_10 Chr3 13554998 13983322 overlap Chr3 13580848 13923082 21.27154 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_oy.0_13554998_13_10 Chr3 13554998 13983322 trans Chr3 14374502 14474953 11.31831 13556277 13972908 14382100 14474836 4 0.0211148500622 0.0 0.112282886295 0.277722277722 4 0.0 8.025 0.196803196803 3_oy.0_13554998_13_10 Chr3 13554998 13983322 trans Chr3 14475219 14475365 6.967863 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_tsu.0_18876821_18_13 Chr5 18876821 19304459 cis Chr5 15990823 18871821 127.1076 18899859 19273042 16665201 18615233 2 0.00348310693138 0.0 0.125278509306 0.817182817183 2 0.0 11.0 0.654345654346 5_tsu.0_18876821_18_13 Chr5 18876821 19304459 cis Chr5 19309459 19304889 127.1076 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_tsu.0_18876821_18_13 Chr5 18876821 19304459 trans Chr5 19306171 22084990 93.52445 18891418 19286222 19447711 21837339 4 0.0156822344322 0.0 0.118943053966 0.341658341658 4 0.0 12.0 0.237762237762 5_tsu.0_18876821_18_13 Chr5 18876821 19304459 trans Chr5 15098513 15099450 11.98979 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_hi.0_14073589_11_9 Chr5 14073589 14540455 cis Chr5 8584317 14068589 34.15305 14080367 14524101 9042349 13838920 5 0.0217612730173 0.0 0.114996840006 0.273726273726 4 0.0 8.025 0.207792207792 5_hi.0_14073589_11_9 Chr5 14073589 14540455 cis Chr5 14545455 15092715 34.15305 14095703 14522721 14615002 15088950 1 0.010101010101 0.0 0.104439537543 0.563436563437 1 0.0 7.0 0.829170829171 5_hi.0_14073589_11_9 Chr5 14073589 14540455 trans Chr5 15354623 17177600 18.95112 14102624 14523948 15362368 17114257 3 0.0224416106769 0.0 0.119886047021 0.280719280719 3 0.0 8.0 0.340659340659 5_hi.0_14073589_11_9 Chr5 14073589 14540455 trans Chr5 15188689 15254475 8.063733 14399443 14519685 15198103 15207781 2 0.0204545454545 0.0 0.118233538779 0.293706293706 2 0.0 8.0 0.579420579421 4_ct.1_1011_17_4 Chr4 1011 197666 cis Chr4 978 -3989 61.71947 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ct.1_1011_17_4 Chr4 1011 197666 cis Chr4 202666 4234878 61.71947 51535 185379 558073 3649761 9 0.0234572448889 0.0 0.126550645347 0.280719280719 7 0.0 12.0 0.110889110889 4_ct.1_1011_17_4 Chr4 1011 197666 trans Chr4 4635016 4763257 23.06147 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ct.1_1011_17_4 Chr4 1011 197666 trans Chr4 4768358 7193037 19.81368 3171 193577 4957627 7139642 4 0.029159467983 0.0 0.0952514596771 0.182817182817 4 0.0 10.0 0.270729270729 1_ws.0_26135582_15_15 Chr1 26135582 26284496 cis Chr1 24803965 26130582 257.8615 26238799 26247944 24843380 25280904 4 0.0201587301587 0.0 0.116200999482 0.268731268731 4 0.0 8.025 0.145854145854 1_ws.0_26135582_15_15 Chr1 26135582 26284496 cis Chr1 26289496 29266364 257.8615 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_ws.0_26135582_15_15 Chr1 26135582 26284496 trans Chr1 24303815 24699228 27.37494 26149813 26150654 24497611 24497711 2 0.0888888888889 0.0 0.0724022366522 0.020979020979 2 0.0 3.0 0.0789210789211 1_ws.0_26135582_15_15 Chr1 26135582 26284496 trans Chr1 23483343 23753847 14.20566 26285211 26285262 23729492 23729543 1 0.0666666666667 0.0 0.0444444444444 0.024975024975 1 0.0 1.0 0.045954045954 4_kn.0_4454535_11_8 Chr4 4454535 4589018 trans Chr4 2840429 3943122 14.52284 4459889 4572896 2888295 3922058 6 0.0926295926296 0.0 0.107420884226 0.037962037962 4 0.0 7.0 0.171828171828 4_kn.0_4454535_11_8 Chr4 4454535 4589018 overlap Chr4 4505447 4506174 6.55313 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_kn.0_4454535_11_8 Chr4 4454535 4589018 trans Chr1 5950385 5979374 6.315442 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_wil.2_13970256_10_10 Chr3 13970256 14340231 overlap Chr3 14285318 14328717 27.73284 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_wil.2_13970256_10_10 Chr3 13970256 14340231 trans Chr3 10419623 13581021 24.91542 13971572 14339113 10860075 13553524 8 0.000176379675227 0.0 0.106277223389 0.747252747253 2 0.0 6.0 0.40959040959 3_wil.2_13970256_10_10 Chr3 13970256 14340231 overlap Chr3 13983280 14272331 24.91542 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_26881725_14_7 Chr1 26881725 26991702 cis Chr1 26745783 26876725 80.02128 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_26881725_14_7 Chr1 26881725 26991702 cis Chr1 26996702 29266364 80.02128 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_26881725_14_7 Chr1 26881725 26991702 trans Chr1 26331434 26742674 42.86896 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_26881725_14_7 Chr1 26881725 26991702 trans Chr1 26138333 26280567 15.21884 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_10472449_10_7 Chr3 10472449 10485433 overlap Chr3 10479068 10483280 11.96693 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_no.0_10472449_10_7 Chr3 10472449 10485433 trans Chr2 57700 57700 9.71715 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_10472449_10_7 Chr3 10472449 10485433 trans Chr2 2344989 2344989 6.686893 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_po.0_4319643_10_8 Chr4 4319643 4722200 cis Chr4 4319642 4314643 90.52377 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_po.0_4319643_10_8 Chr4 4319643 4722200 cis Chr4 4727200 4763095 90.52377 4385001 4716621 4731173 4748011 2 0.016847826087 0.0 0.110993445419 0.360639360639 2 0.0 6.0 0.302697302697 4_po.0_4319643_10_8 Chr4 4319643 4722200 trans Chr4 4768088 6180365 14.4293 4323135 4717712 4769213 6165519 4 0.00983585858586 0.0 0.130261274354 0.525474525475 4 0.0 7.0 0.0919080919081 4_po.0_4319643_10_8 Chr4 4319643 4722200 trans Chr4 1653418 4233417 13.61827 4320843 4710856 1658917 4219202 10 0.0432107072718 0.0 0.10209567577 0.110889110889 6 0.0 5.0 0.023976023976 2_po.0_6666263_10_2 Chr2 6666263 6797495 overlap Chr2 6691968 6795275 35.00048 0 0 0 0 0 0 0 inf 1 0 0 inf 1 2_po.0_6666263_10_2 Chr2 6666263 6797495 trans Chr2 5660828 5908503 11.46769 6733037 6779923 5827125 5904799 1 0.00260416666667 0.0 0.114244115825 0.783216783217 1 0.0 5.0 0.783216783217 2_po.0_6666263_10_2 Chr2 6666263 6797495 trans Chr2 6350706 6350706 7.510674 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_7647783_14_6 Chr4 7647783 7768694 cis Chr4 4839085 7642783 148.3952 7687299 7762664 5343160 7438425 5 0.0160893380341 0.0 0.103485308191 0.406593406593 5 0.0 8.0 0.107892107892 4_edi.0_7647783_14_6 Chr4 7647783 7768694 cis Chr4 7773694 8539521 148.3952 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_7647783_14_6 Chr4 7647783 7768694 trans Chr4 9585571 10307488 17.56948 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_7647783_14_6 Chr4 7647783 7768694 trans Chr4 8774209 8926347 13.06288 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_13717699_10_5 Chr1 13717699 13825404 cis Chr1 13491348 13745060 40.8118 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_13717699_10_5 Chr1 13717699 13825404 trans Chr1 13827683 14043218 10.36184 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_13717699_10_5 Chr1 13717699 13825404 trans Chr1 13168652 13372626 10.07706 13784620 13784671 13299466 13299517 1 0.1 0.0 0.0703333333333 0.023976023976 1 0.0 1.0 0.042957042957 5_bur.0_17390673_13_4 Chr5 17390673 17491190 cis Chr5 17097371 17385673 60.26216 17438318 17438369 17342026 17342077 1 0.0769230769231 0.0 0.0769230769231 0.032967032967 1 0.0 1.0 0.0639360639361 5_bur.0_17390673_13_4 Chr5 17390673 17491190 cis Chr5 17496190 18156746 60.26216 17412804 17412890 18112612 18112663 2 0.0512820512821 0.0 0.0769230769231 0.0689310689311 1 0.0 1.0 0.0949050949051 5_bur.0_17390673_13_4 Chr5 17390673 17491190 trans Chr5 16503919 17034541 36.73376 17444077 17444128 16703862 16703913 1 0.0769230769231 0.0 0.0644230769231 0.025974025974 1 0.0 1.0 0.0659340659341 5_bur.0_17390673_13_4 Chr5 17390673 17491190 trans Chr5 18240505 18597053 23.907 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_po.0_813470_12_1 Chr4 813470 1261744 cis Chr4 714624 1253923 75.88689 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_po.0_813470_12_1 Chr4 813470 1261744 trans Chr4 1396166 1675614 32.0819 953901 953952 1650574 1650625 1 0.0277777777778 0.0 0.0833333333333 0.0629370629371 1 0.0 1.0 0.0629370629371 4_po.0_813470_12_1 Chr4 813470 1261744 trans Chr4 2487648 2782540 28.37254 848244 1234731 2505858 2781900 4 0.0230463980464 0.0 0.120361757707 0.320679320679 3 0.0 8.0 0.351648351648 3_ct.1_14374491_10_1 Chr3 14374491 14483419 overlap Chr3 14379490 14475575 38.82118 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_ct.1_14374491_10_1 Chr3 14374491 14483419 trans Chr5 26729078 26732448 6.848098 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ct.1_14374491_10_1 Chr3 14374491 14483419 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_13147272_10_6 Chr3 13147272 13247287 overlap Chr3 13206266 13212650 9.847087 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_13147272_10_6 Chr3 13147272 13247287 trans Chr5 256010 256010 8.704357 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_13147272_10_6 Chr3 13147272 13247287 trans Chr5 259377 259377 8.686677 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ler.0_4696358_16_6 Chr4 4696358 4768660 trans Chr5 20814458 20815457 9.363324 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ler.0_4696358_16_6 Chr4 4696358 4768660 trans Chr3 763281 763281 7.820254 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ler.0_4696358_16_6 Chr4 4696358 4768660 trans Chr4 3646914 3778796 7.746555 4700753 4768575 3658503 3747155 2 0.00657051282051 0.0 0.0905387141464 0.707292707293 2 0.0 10.0 0.71028971029 4_zu.0_112644_22_1 Chr4 112644 126478 cis Chr4 978 107644 67.6771 112784 113276 104165 104538 3 0.0227272727273 0.0 0.0848484848485 0.232767232767 2 0.0 5.0 0.160839160839 4_zu.0_112644_22_1 Chr4 112644 126478 cis Chr4 131478 641324 67.6771 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_zu.0_112644_22_1 Chr4 112644 126478 trans Chr4 658436 737506 7.417929 119636 124936 660409 660485 2 0.00358851674641 0.0 0.043261534509 0.66033966034 2 0.0 8.0 0.353646353646 4_zu.0_112644_22_1 Chr4 112644 126478 trans Chr4 746973 747677 6.144528 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_can.0_6110834_10_9 Chr2 6110834 6178199 cis Chr2 979210 6105834 54.81278 6111815 6177685 1078920 6099518 7 0.0187746151092 0.0 0.13260877456 0.311688311688 4 0.0 7.0 0.127872127872 2_can.0_6110834_10_9 Chr2 6110834 6178199 cis Chr2 6183199 6393521 54.81278 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_can.0_6110834_10_9 Chr2 6110834 6178199 trans Chr2 6870655 7270343 8.727507 6173578 6176076 6877513 7032639 2 0.00293865293865 0.0 0.12954386646 0.701298701299 2 0.0 6.0 0.364635364635 2_can.0_6110834_10_9 Chr2 6110834 6178199 trans Chr2 8800897 8982552 8.680485 6167870 6167921 8812867 8812918 1 0.05 0.0 0.05 0.030969030969 1 0.0 1.0 0.037962037962 5_zu.0_10020036_15_10 Chr5 10020036 10115500 cis Chr5 5667247 10082052 29.45921 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_zu.0_10020036_15_10 Chr5 10020036 10115500 trans Chr5 11659431 13977258 16.88424 10019153 10112340 11665053 13633449 7 0.0079705689785 0.0 0.112762708259 0.675324675325 7 0.0 9.0 0.0699300699301 5_zu.0_10020036_15_10 Chr5 10020036 10115500 cis Chr5 10087527 11629255 15.50451 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_mt.0_17806374_16_5 Chr4 17806374 18034051 cis Chr4 11268278 17801374 64.04828 17826070 17951214 11506745 17708169 4 0.0164817821068 0.0 0.117855035971 0.417582417582 4 0.0 11.0 0.23976023976 4_mt.0_17806374_16_5 Chr4 17806374 18034051 cis Chr4 18039051 18519040 64.04828 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_mt.0_17806374_16_5 Chr4 17806374 18034051 trans Chr4 10639842 10999276 8.629079 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_mt.0_17806374_16_5 Chr4 17806374 18034051 trans Chr4 72640 72640 8.349957 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_sf.2_18962573_14_12 Chr1 18962573 18971290 overlap Chr1 18962754 18971094 36.7169 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_sf.2_18962573_14_12 Chr1 18962573 18971290 trans Chr4 4316672 4318801 7.996939 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_sf.2_18962573_14_12 Chr1 18962573 18971290 trans Chr1 18971499 18971499 6.513295 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_tsu.0_1011_14_6 Chr4 1011 126044 cis Chr4 978 125676 48.51671 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_tsu.0_1011_14_6 Chr4 1011 126044 trans Chr4 126646 1003563 39.30658 75454 127051 126657 660460 27 0.0769918335311 0.0 0.0930189801988 0.036963036963 10 0.0 8.0 0.011988011988 4_tsu.0_1011_14_6 Chr4 1011 126044 trans Chr4 1086748 1331317 12.79465 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_po.0_17456077_12_2 Chr5 17456077 17643447 cis Chr5 16550406 17451077 67.48215 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_po.0_17456077_12_2 Chr5 17456077 17643447 cis Chr5 17648447 18169709 67.48215 17532115 17532166 17864082 17864133 1 0.0277777777778 0.0 0.0833333333333 0.0559440559441 1 0.0 1.0 0.0599400599401 5_po.0_17456077_12_2 Chr5 17456077 17643447 trans Chr5 18212011 18879013 37.49549 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_po.0_17456077_12_2 Chr5 17456077 17643447 trans Chr5 16381358 16461843 13.02004 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_oy.0_14468102_27_13 Chr3 14468102 14552325 overlap Chr3 14483383 14533787 33.09577 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_oy.0_14468102_27_13 Chr3 14468102 14552325 trans Chr2 1859413 6720491 17.11818 14467584 14553154 1896995 6575128 38 0.0351462725051 0.0 0.162526071713 0.143856143856 18 0.0 19.025 0.036963036963 3_oy.0_14468102_27_13 Chr3 14468102 14552325 trans Chr4 4590735 4604348 11.59608 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_tsu.0_5953923_10_4 Chr1 5953923 6026269 overlap Chr1 6009913 6013593 10.10028 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_tsu.0_5953923_10_4 Chr1 5953923 6026269 trans Chr1 4586992 4849192 9.523049 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_tsu.0_5953923_10_4 Chr1 5953923 6026269 trans Chr5 3715046 3715046 8.497638 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_can.0_6009619_11_8 Chr1 6009619 6074949 trans Chr1 11830247 18962607 54.60733 6009345 6047533 15997786 17070344 9 0.0286003380663 0.0 0.120250741098 0.254745254745 7 0.0 6.0 0.023976023976 1_can.0_6009619_11_8 Chr1 6009619 6074949 cis Chr1 6000509 6015130 43.82358 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_can.0_6009619_11_8 Chr1 6009619 6074949 trans Chr1 19049266 20514579 15.31167 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_sf.2_14328742_27_25 Chr3 14328742 14544490 overlap Chr3 14340007 14528339 61.56946 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_sf.2_14328742_27_25 Chr3 14328742 14544490 overlap Chr3 14337273 14337879 6.287299 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_sf.2_14328742_27_25 Chr3 14328742 14544490 overlap Chr3 14530411 14530738 6.220648 0 0 0 0 0 0 0 inf 1 0 0 inf 1 5_wu.0_14486019_14_12 Chr5 14486019 14909641 cis Chr5 8783283 14481019 50.75274 14489988 14904386 8875438 14452214 7 0.0074273489376 0.0 0.114946492688 0.658341658342 4 0.0 9.0 0.244755244755 5_wu.0_14486019_14_12 Chr5 14486019 14909641 cis Chr5 14914641 15111875 50.75274 14499081 14845762 14995640 15099690 14 0.0524455936221 0.0 0.118834207085 0.0869130869131 8 0.0 10.0 0.0539460539461 5_wu.0_14486019_14_12 Chr5 14486019 14909641 trans Chr5 15188689 18575792 30.449 14500681 14880302 15207313 18556256 4 0.0154500671742 0.0 0.0940759811265 0.38961038961 3 0.0 9.0 0.362637362637 5_wu.0_14486019_14_12 Chr5 14486019 14909641 trans Chr5 15120649 15172351 6.949391 14499410 14499461 15146975 15147026 1 0.0714285714286 0.0 0.0714285714286 0.031968031968 1 0.0 1.0 0.0609390609391 1_ws.0_12603649_12_1 Chr1 12603649 12666813 overlap Chr1 12659798 12660199 27.86854 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_ws.0_12603649_12_1 Chr1 12603649 12666813 cis Chr1 12660454 12735241 8.797642 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_ws.0_12603649_12_1 Chr1 12603649 12666813 overlap Chr1 12607967 12659024 8.507154 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_16435661_12_2 Chr1 16435661 16485339 cis Chr1 11456833 16430661 88.29102 16457515 16478550 11704010 16248760 3 0.0143849206349 0.0 0.09276081249 0.443556443556 3 0.0 7.0 0.371628371628 1_bur.0_16435661_12_2 Chr1 16435661 16485339 cis Chr1 16490339 22174775 88.29102 16449897 16472931 17528691 19598360 7 0.0253289042801 0.0 0.130885386196 0.221778221778 5 0.0 8.0 0.126873126873 1_bur.0_16435661_12_2 Chr1 16435661 16485339 trans Chr1 9747887 11440812 24.30508 16477882 16477933 10983890 10983941 1 0.0833333333333 0.0 0.0833333333333 0.026973026973 1 0.0 1.0 0.044955044955 1_bur.0_16435661_12_2 Chr1 16435661 16485339 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_15711235_10_2 Chr3 15711235 15821944 overlap Chr3 15711361 15726863 22.35832 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_15711235_10_2 Chr3 15711235 15821944 trans Chr1 8589462 11206737 15.68496 15710637 15755003 9311550 11178940 4 0.0111111111111 0.0 0.126631185549 0.515484515485 3 0.0 7.0 0.277722277722 3_hi.0_15711235_10_2 Chr3 15711235 15821944 trans Chr1 6984029 7466217 6.854586 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_kn.0_23542260_12_2 Chr5 23542260 23680611 cis Chr5 20954362 23537260 41.62062 23559307 23659058 21144278 23018750 1 0.00833333333333 0.0 0.136395097747 0.564435564436 1 0.0 8.0 0.787212787213 5_kn.0_23542260_12_2 Chr5 23542260 23680611 cis Chr5 23685611 26938137 41.62062 23593484 23593535 26350997 26351048 1 0.0277777777778 0.0 0.0752083333333 0.0509490509491 1 0.0 1.0 0.0539460539461 5_kn.0_23542260_12_2 Chr5 23542260 23680611 trans Chr5 20807146 20807292 12.13149 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_kn.0_23542260_12_2 Chr5 23542260 23680611 trans Chr5 18633377 18988524 10.02049 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_kn.0_9604375_15_6 Chr3 9604375 9688913 overlap Chr3 9613342 9624810 21.39538 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_kn.0_9604375_15_6 Chr3 9604375 9688913 trans Chr1 7179863 7180305 8.131083 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_kn.0_9604375_15_6 Chr3 9604375 9688913 trans Chr1 10623174 10761043 6.623563 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_bur.0_16616187_16_1 Chr2 16616187 16708427 cis Chr2 13877562 16611187 65.88904 16637316 16637367 15565959 15566010 1 0.0384615384615 0.0 0.0512820512821 0.033966033966 1 0.0 1.0 0.036963036963 2_bur.0_16616187_16_1 Chr2 16616187 16708427 cis Chr2 16713427 19634846 65.88904 16685268 16685319 17289555 17289606 1 0.0769230769231 0.0 0.0769230769231 0.028971028971 1 0.0 1.0 0.043956043956 2_bur.0_16616187_16_1 Chr2 16616187 16708427 trans Chr2 12548359 13876707 12.13377 16650799 16650850 13102121 13102172 1 0.0769230769231 0.0 0.0519230769231 0.025974025974 1 0.0 1.0 0.044955044955 2_bur.0_16616187_16_1 Chr2 16616187 16708427 trans Chr2 10335054 11939474 10.45609 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1