ID chr.segment start.segment end.segment qtl_type chr.full_qtl start.full_qtl end.full_qtl min_from_trans_start max_from_trans_end min_to_trans_start max_to_trans_end total_number_of_trans_reads mean_percentage_trans_reads perc_conf_interval_start perc_conf_interval_end perc_p_value num_lines_with_trans lines_conf_interval_start lines_conf_interval_end lines_p_value 5_hi.0_23523539_19_4 Chr5 23523539 23529846 cis Chr5 21351598 23522539 54.88035 23522501 23522763 23522330 23522573 12 0.312280701754 0.0 0.0789473684211 0.001998001998 9 0.0 3.0 0.003996003996 5_hi.0_23523539_19_4 Chr5 23523539 23529846 cis Chr5 23530846 26333380 54.88035 23530652 23530876 23530864 23531175 12 0.306140350877 0.0 0.0789473684211 0.000999000999001 10 0.0 2.0 0.002997002997 5_hi.0_23523539_19_4 Chr5 23523539 23529846 trans Chr5 20430360 20942324 8.596297 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_hi.0_23523539_19_4 Chr5 23523539 23529846 trans Chr5 21121480 21302940 7.082359 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_tsu.0_13770649_13_8 Chr5 13770649 14094464 cis Chr5 5666136 13769649 47.61895 13769635 14088440 6249554 13769674 11 0.0312857738948 0.0 0.117438446502 0.174825174825 6 0.0 9.0 0.123876123876 5_tsu.0_13770649_13_8 Chr5 13770649 14094464 cis Chr5 14095464 15092715 47.61895 13812238 14095443 14095472 15052663 9 0.0358718931133 0.0 0.114113631392 0.140859140859 7 0.0 10.0 0.0769230769231 5_tsu.0_13770649_13_8 Chr5 13770649 14094464 trans Chr5 15328462 17258012 19.86233 13786738 14066288 15504979 17038986 19 0.0407940184325 0.0 0.132531278347 0.104895104895 9 0.0 9.0 0.030969030969 5_tsu.0_13770649_13_8 Chr5 13770649 14094464 trans Chr5 5279639 5665738 11.33092 13852944 13931366 5633111 5645032 1 0.00213675213675 0.0 0.113980132604 0.854145854146 1 0.0 10.0 0.854145854146 4_oy.0_4571011_12_3 Chr4 4571011 4635113 overlap Chr4 4590558 4604683 18.41389 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_oy.0_4571011_12_3 Chr4 4571011 4635113 overlap Chr4 4627051 4630142 15.03823 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_oy.0_4571011_12_3 Chr4 4571011 4635113 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_oy.0_1337447_10_1 Chr2 1337447 1448608 cis Chr2 584455 1379823 11.38979 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_oy.0_1337447_10_1 Chr2 1337447 1448608 cis Chr2 1403945 1568117 11.17861 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_oy.0_1337447_10_1 Chr2 1337447 1448608 overlap Chr2 1387427 1392457 10.36184 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_17992357_12_9 Chr4 17992357 18213300 cis Chr4 16769443 17991357 39.3055 17991320 17991638 17991169 17991320 12 0.30625 0.0 0.0833333333333 0.000999000999001 7 0.0 2.0 0.002997002997 4_rsch.4_17992357_12_9 Chr4 17992357 18213300 cis Chr4 18214300 18519040 39.3055 18214005 18214331 18214300 18214694 13 0.386408730159 0.0 0.0938368055556 0.001998001998 7 0.0 2.0 0.002997002997 4_rsch.4_17992357_12_9 Chr4 17992357 18213300 trans Chr4 12147716 16645889 11.85598 18053446 18202912 16574041 16609538 1 0.0166666666667 0.0 0.112743321469 0.365634365634 1 0.0 7.0 0.789210789211 4_rsch.4_17992357_12_9 Chr4 17992357 18213300 trans Chr2 12329618 13368725 9.85001 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_14454399_36_12 Chr3 14454399 14552351 overlap Chr3 14471552 14532767 19.21823 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_14454399_36_12 Chr3 14454399 14552351 trans Chr4 1324082 1380038 7.256574 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_14454399_36_12 Chr3 14454399 14552351 overlap Chr3 14534635 14534635 6.953823 0 0 0 0 0 0 0 inf 1 0 0 inf 1 5_bur.0_20299561_11_6 Chr5 20299561 20419703 cis Chr5 19521014 20298561 62.06938 20298530 20381077 19863363 20298586 11 0.0378379613105 0.0 0.122603895732 0.133866133866 7 0.0 8.0 0.03996003996 5_bur.0_20299561_11_6 Chr5 20299561 20419703 cis Chr5 20420703 21878711 62.06938 20420478 20420738 20420756 20421068 4 0.172727272727 0.0 0.0909090909091 0.00999000999001 3 0.0 2.0 0.014985014985 5_bur.0_20299561_11_6 Chr5 20299561 20419703 trans Chr5 17930295 18890885 48.36747 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_bur.0_20299561_11_6 Chr5 20299561 20419703 trans Chr5 17756950 17929181 33.36303 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_4572469_13_1 Chr4 4572469 4715788 overlap Chr4 4626755 4635918 47.30492 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_4572469_13_1 Chr4 4572469 4715788 overlap Chr4 4636605 4637056 10.32206 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_4572469_13_1 Chr4 4572469 4715788 overlap Chr4 4625885 4625885 6.717666 0 0 0 0 0 0 0 inf 1 0 0 inf 1 5_ws.0_15098530_11_1 Chr5 15098530 15217844 overlap Chr5 15108607 15198900 54.60733 0 0 0 0 0 0 0 inf 1 0 0 inf 1 5_ws.0_15098530_11_1 Chr5 15098530 15217844 trans Chr5 20808019 20808987 10.4053 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_ws.0_15098530_11_1 Chr5 15098530 15217844 trans Chr5 13773920 13792294 7.683007 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_wil.2_12662086_12_6 Chr3 12662086 12766290 trans Chr4 978 4315339 20.39977 12672034 12766727 1198710 4306932 11 0.0651502291077 0.0 0.117495080677 0.0679320679321 7 0.0 6.025 0.025974025974 3_wil.2_12662086_12_6 Chr3 12662086 12766290 trans Chr4 4766203 5923592 18.4891 12669563 12760588 4985838 5889331 2 0.0265151515152 0.0 0.0964782819801 0.174825174825 2 0.0 6.0 0.236763236763 3_wil.2_12662086_12_6 Chr3 12662086 12766290 trans Chr1 9470474 9888158 15.46631 12729479 12729530 9708166 9708217 1 0.0454545454545 0.0 0.00676515151515 0.024975024975 1 0.0 1.0 0.026973026973 3_can.0_14443175_11_7 Chr3 14443175 14528470 overlap Chr3 14494450 14511874 15.68942 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_can.0_14443175_11_7 Chr3 14443175 14528470 trans Chr4 3040818 3943122 11.19259 14443822 14505005 3127912 3886778 12 0.110025429116 0.0 0.1161671143 0.028971028971 9 0.0 7.0 0.014985014985 3_can.0_14443175_11_7 Chr3 14443175 14528470 trans Chr4 10453682 10453861 10.28973 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_hi.0_14864223_11_2 Chr5 14864223 15112049 overlap Chr5 14881776 15107666 50.54445 0 0 0 0 0 0 0 inf 1 0 0 inf 1 5_hi.0_14864223_11_2 Chr5 14864223 15112049 trans Chr5 8945484 14068970 25.2178 14865636 15080477 8958817 14064107 8 0.02475486068 0.0 0.121120279008 0.298701298701 7 0.0 8.0 0.04995004995 5_hi.0_14864223_11_2 Chr5 14864223 15112049 trans Chr5 15328786 16843082 25.12443 15003776 15048382 15518572 16705762 1 0.00275482093664 0.0 0.118497643319 0.84015984016 1 0.0 8.0 0.842157842158 3_ler.0_21693981_10_8 Chr3 21693981 21874301 trans Chr3 18085787 19850282 48.83033 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ler.0_21693981_10_8 Chr3 21693981 21874301 trans Chr3 20223904 21683372 47.19933 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ler.0_21693981_10_8 Chr3 21693981 21874301 trans Chr3 22467222 23371191 27.90511 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ws.0_4196767_32_28 Chr4 4196767 4333198 cis Chr4 176373 4195767 47.43701 4195717 4332411 212007 4195818 35 0.0568297443254 0.0 0.114604890822 0.0689310689311 23 0.0 19.0 0.013986013986 4_ws.0_4196767_32_28 Chr4 4196767 4333198 cis Chr4 4334198 4445731 47.43701 4255884 4297028 4382460 4442918 6 0.00901061432638 0.0 0.0924255829892 0.605394605395 5 0.0 17.0 0.342657342657 4_ws.0_4196767_32_28 Chr4 4196767 4333198 trans Chr4 4534340 7342620 26.99441 4199588 4331445 4540788 7326957 15 0.0217152345495 0.0 0.114169148512 0.263736263736 12 0.0 20.0 0.104895104895 4_ws.0_4196767_32_28 Chr4 4196767 4333198 trans Chr4 978 121344 10.07942 4294146 4294197 17429 17480 1 0.03125 0.0 0.046875 0.0639360639361 1 0.0 2.0 0.107892107892 1_edi.0_26707873_14_5 Chr1 26707873 26798902 cis Chr1 26138333 26706873 189.5372 26706843 26707068 26706454 26706871 11 0.345238095238 0.0 0.0776785714286 0.000999000999001 9 0.0 2.0 0.002997002997 1_edi.0_26707873_14_5 Chr1 26707873 26798902 cis Chr1 26799902 29266364 189.5372 26762270 26799950 26799918 29051517 8 0.0351548514142 0.0 0.140874317927 0.127872127872 6 0.0 8.025 0.0699300699301 1_edi.0_26707873_14_5 Chr1 26707873 26798902 trans Chr1 25465752 26138208 21.34187 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_edi.0_26707873_14_5 Chr1 26707873 26798902 trans Chr1 24303815 24693978 19.67003 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_oy.0_1261203_10_10 Chr2 1261203 1461134 cis Chr2 41625 1275313 33.02097 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_oy.0_1261203_10_10 Chr2 1261203 1461134 cis Chr2 1276312 2722935 29.33494 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_oy.0_1261203_10_10 Chr2 1261203 1461134 trans Chr2 3217892 4400712 21.13033 1299224 1437543 3762877 4323898 4 0.0190793650794 0.0 0.106675724638 0.264735264735 3 0.0 5.0 0.120879120879 4_zu.0_15201478_13_3 Chr4 15201478 15417469 trans Chr4 11767255 13527729 85.14774 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_zu.0_15201478_13_3 Chr4 15201478 15417469 trans Chr4 16440869 16626584 51.34661 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_zu.0_15201478_13_3 Chr4 15201478 15417469 trans Chr4 10660879 10935436 44.69709 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ws.0_9479583_12_2 Chr4 9479583 9579364 overlap Chr4 9480346 9488128 22.9104 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_ws.0_9479583_12_2 Chr4 9479583 9579364 cis Chr4 9568188 9680095 14.30405 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ws.0_9479583_12_2 Chr4 9479583 9579364 trans Chr4 8978200 9427899 13.76433 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_14444150_17_11 Chr3 14444150 14551708 overlap Chr3 14475204 14539643 29.16406 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_14444150_17_11 Chr3 14444150 14551708 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_14444150_17_11 Chr3 14444150 14551708 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_14246685_18_2 Chr3 14246685 14286771 cis Chr3 13206026 14245685 35.73432 14245646 14269523 13414024 14245720 13 0.0192697338308 0.0 0.125652323489 0.275724275724 10 0.0 11.025 0.041958041958 3_hi.0_14246685_18_2 Chr3 14246685 14286771 cis Chr3 14287771 14402837 35.73432 14261139 14287792 14287786 14394682 5 0.0130660669975 0.0 0.0962245325692 0.382617382617 4 0.0 9.025 0.191808191808 3_hi.0_14246685_18_2 Chr3 14246685 14286771 trans Chr3 14535059 17345084 22.41878 14246240 14272706 14556908 16431221 4 0.00679185254349 0.0 0.105633737912 0.593406593407 3 0.0 11.0 0.316683316683 3_hi.0_14246685_18_2 Chr3 14246685 14286771 trans Chr3 10252001 13198017 18.90715 14247750 14287217 11418826 12999302 4 0.00729850783577 0.0 0.113036335776 0.573426573427 4 0.0 11.0 0.228771228771 3_rsch.4_14251151_21_18 Chr3 14251151 14374252 cis Chr3 9626328 14354667 78.25771 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_rsch.4_14251151_21_18 Chr3 14251151 14374252 trans Chr3 14535040 18211067 59.19318 14255093 14375176 14571171 17640416 15 0.0635344319816 0.0 0.120365139842 0.0509490509491 10 0.0 14.0 0.0859140859141 3_rsch.4_14251151_21_18 Chr3 14251151 14374252 trans Chr3 18297192 18515096 11.14143 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_can.0_18951050_10_3 Chr1 18951050 19049229 cis Chr1 17220088 18962645 25.49032 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_can.0_18951050_10_3 Chr1 18951050 19049229 cis Chr1 18971094 19049433 23.4716 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_can.0_18951050_10_3 Chr1 18951050 19049229 trans Chr1 19049696 24175327 21.96884 18962138 19050269 19049710 23762414 27 0.110299950212 0.0 0.122310606061 0.028971028971 7 0.0 6.0 0.017982017982 4_sf.2_4189543_21_20 Chr4 4189543 4332891 cis Chr4 1305395 4315023 50.3846 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_sf.2_4189543_21_20 Chr4 4189543 4332891 trans Chr4 4448822 6100477 19.97667 4190341 4331595 4450791 5980406 10 0.0377274192147 0.0 0.109464721088 0.135864135864 9 0.0 13.0 0.0659340659341 4_sf.2_4189543_21_20 Chr4 4189543 4332891 trans Chr4 182436 1257869 14.9914 4311241 4311357 464467 617830 2 0.0555555555556 0.0 0.0873015873016 0.040959040959 2 0.0 2.025 0.047952047952 3_tsu.0_13916213_14_9 Chr3 13916213 14076466 overlap Chr3 13963300 13983576 19.72174 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_13916213_14_9 Chr3 13916213 14076466 overlap Chr3 13990591 14032513 7.556151 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_13916213_14_9 Chr3 13916213 14076466 trans Chr2 4997682 4997682 7.265191 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_oy.0_13803122_10_4 Chr3 13803122 13979579 trans Chr1 6013858 6701330 16.97454 13950952 13968043 6572312 6572665 1 0.00769230769231 0.0 0.0719702555509 0.58041958042 1 0.0 5.0 0.832167832168 3_oy.0_13803122_10_4 Chr3 13803122 13979579 trans Chr5 15053728 15055302 10.16646 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_oy.0_13803122_10_4 Chr3 13803122 13979579 trans Chr4 3727461 3729312 9.045325 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_edi.0_16476558_13_11 Chr1 16476558 16579531 overlap Chr1 16489026 16561336 35.9784 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_edi.0_16476558_13_11 Chr1 16476558 16579531 cis Chr1 16561648 16880820 10.01505 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_edi.0_16476558_13_11 Chr1 16476558 16579531 trans Chr1 16130429 16472780 9.252531 16520153 16571797 16180320 16212766 2 0.000959118666737 0.0 0.101026307057 0.809190809191 2 0.0 9.0 0.516483516484 4_tsu.0_2189638_19_18 Chr4 2189638 2417405 cis Chr4 978 2188638 124.2406 2188615 2409932 52274 2188615 9 0.0292362851573 0.0 0.095544486685 0.16983016983 6 0.0 10.0 0.120879120879 4_tsu.0_2189638_19_18 Chr4 2189638 2417405 cis Chr4 2418405 4366142 124.2406 2236216 2418428 2418419 4359559 10 0.0392547116016 0.0 0.105339674437 0.12987012987 6 0.0 11.0 0.132867132867 4_tsu.0_2189638_19_18 Chr4 2189638 2417405 trans Chr4 4552106 7081267 83.93648 2208289 2380019 4790083 7018873 6 0.011641731384 0.0 0.131908135677 0.523476523477 5 0.0 11.0 0.201798201798 4_tsu.0_2189638_19_18 Chr4 2189638 2417405 trans Chr2 52361 56315 19.40934 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_no.0_1011_10_6 Chr4 1011 125866 cis Chr4 978 125736 31.67312 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_no.0_1011_10_6 Chr4 1011 125866 trans Chr4 126589 1612704 29.90584 77130 126913 126592 1446946 17 0.0597631298723 0.0 0.120696289975 0.0709290709291 6 0.0 7.0 0.0529470529471 4_no.0_1011_10_6 Chr4 1011 125866 trans Chr4 2330469 2782540 14.53418 50584 50763 2363262 2708411 2 0.0458333333333 0.0 0.130083333333 0.0739260739261 2 0.0 2.0 0.03996003996 4_can.0_4266742_10_9 Chr4 4266742 4589204 overlap Chr4 4318405 4574480 59.99404 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_can.0_4266742_10_9 Chr4 4266742 4589204 cis Chr4 4588726 4589755 9.734819 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_can.0_4266742_10_9 Chr4 4266742 4589204 trans Chr1 13641599 13947626 7.154875 4328375 4581261 13644576 13916693 3 0.0166533466533 0.0 0.122271465937 0.320679320679 3 0.0 7.0 0.147852147852 5_no.0_18154917_13_6 Chr5 18154917 18210719 trans Chr5 18240283 18879610 58.65856 18182748 18182799 18300561 18300612 1 0.0208333333333 0.0 0.0833333333333 0.0699300699301 1 0.0 1.0 0.0719280719281 5_no.0_18154917_13_6 Chr5 18154917 18210719 cis Chr5 15621230 18153917 55.66243 18153923 18184151 18116877 18153873 17 0.0804552360351 0.0 0.115094714473 0.041958041958 10 0.0 8.0 0.015984015984 5_no.0_18154917_13_6 Chr5 18154917 18210719 cis Chr5 18211719 18225555 55.66243 18211548 18211767 18211746 18211910 3 0.0541666666667 0.0 0.104340277778 0.102897102897 2 0.0 2.0 0.0569430569431 5_no.0_18154917_13_6 Chr5 18154917 18210719 trans Chr5 19526648 21310848 26.14099 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_po.0_4595747_16_1 Chr4 4595747 4768224 overlap Chr4 4614417 4712227 34.11736 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_po.0_4595747_16_1 Chr4 4595747 4768224 trans Chr4 4253333 4253758 12.313 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_po.0_4595747_16_1 Chr4 4595747 4768224 trans Chr2 38423 38423 7.961435 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ws.0_14328742_46_35 Chr3 14328742 14540862 overlap Chr3 14340453 14507303 86.1942 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_ws.0_14328742_46_35 Chr3 14328742 14540862 overlap Chr3 14511874 14528325 8.112737 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_ws.0_14328742_46_35 Chr3 14328742 14540862 overlap Chr3 14532767 14532857 6.742604 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_mt.0_24173134_121_29 Chr1 24173134 24182065 cis Chr1 19836813 24172134 125.4571 24172087 24172468 24171775 24172185 57 0.218634395907 0.0 0.071605930609 0.000999000999001 43 0.0 20.0 0.00599400599401 1_mt.0_24173134_121_29 Chr1 24173134 24182065 cis Chr1 24183065 27408532 125.4571 24177115 24183115 24183065 25330776 75 0.0316147603944 0.00495277259595 0.159606771561 0.161838161838 53 6.0 77.0 0.0839160839161 1_mt.0_24173134_121_29 Chr1 24173134 24182065 trans Chr1 19608699 19809292 6.926407 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_mt.0_24173134_121_29 Chr1 24173134 24182065 trans Chr1 19586421 19590257 6.72534 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_zu.0_11433867_23_3 Chr1 11433867 11496377 cis Chr1 9200310 11432867 83.48887 11432824 11495353 9449715 11432910 14 0.0246873915332 0.0 0.11353526565 0.214785214785 10 0.0 13.0 0.0659340659341 1_zu.0_11433867_23_3 Chr1 11433867 11496377 cis Chr1 11497377 13591851 83.48887 11465016 11497405 11497451 13205267 5 0.017372521933 0.0 0.142998249846 0.370629370629 5 0.0 13.025 0.242757242757 1_zu.0_11433867_23_3 Chr1 11433867 11496377 trans Chr1 15589038 16089994 14.49889 11452261 11452312 16011502 16011553 1 0.0217391304348 0.0 0.0434782608696 0.0699300699301 1 0.0 1.0 0.0729270729271 1_zu.0_11433867_23_3 Chr1 11433867 11496377 trans Chr1 16110232 16942740 14.14536 11493760 11493811 16723759 16723810 1 0.0434782608696 0.0 0.0434782608696 0.040959040959 1 0.0 1.0 0.0639360639361 1_mt.0_15986522_11_8 Chr1 15986522 16201051 trans Chr1 12709101 14212126 17.45087 15986786 16193506 12816913 14210518 6 0.028946810765 0.0 0.136789457385 0.215784215784 5 0.0 7.0 0.0869130869131 1_mt.0_15986522_11_8 Chr1 15986522 16201051 trans Chr1 15758595 15986158 16.59794 15985532 16158399 15763381 15986153 39 0.235533910534 0.0 0.111359810306 0.00699300699301 9 0.0 6.0 0.00799200799201 1_mt.0_15986522_11_8 Chr1 15986522 16201051 trans Chr1 15586699 15716472 15.73288 16012322 16190856 15594976 15714953 2 0.0212514757969 0.0 0.136393212859 0.291708291708 2 0.0 6.025 0.411588411588 5_hi.0_10018836_10_4 Chr5 10018836 10089502 trans Chr1 103963 103963 8.162233 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_hi.0_10018836_10_4 Chr5 10018836 10089502 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_hi.0_10018836_10_4 Chr5 10018836 10089502 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_ct.1_24175755_33_1 Chr1 24175755 24241560 cis Chr1 24172029 24182275 70.42499 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_ct.1_24175755_33_1 Chr1 24175755 24241560 cis Chr1 24183845 24386813 8.104223 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_ct.1_24175755_33_1 Chr1 24175755 24241560 trans Chr1 23785350 24168546 7.481409 24203952 24223193 24138893 24165260 4 0.00664478890285 0.0 0.103751665174 0.745254745255 3 0.0 16.025 0.579420579421 1_rsch.4_12971010_11_7 Chr1 12971010 13213259 trans Chr1 13871539 14193518 41.23221 13057947 13057998 13905229 13905280 1 0.0909090909091 0.0 0.0606060606061 0.021978021978 1 0.0 1.0 0.046953046953 1_rsch.4_12971010_11_7 Chr1 12971010 13213259 cis Chr1 11069710 12970010 30.55974 12969997 13204101 11076613 12970051 10 0.0419650682491 0.0 0.126280517317 0.150849150849 7 0.0 8.0 0.043956043956 1_rsch.4_12971010_11_7 Chr1 12971010 13213259 cis Chr1 13214259 13733234 30.55974 13068123 13214303 13214314 13432389 6 0.0249301476076 0.0 0.106469306837 0.234765234765 4 0.0 6.0 0.121878121878 1_rsch.4_12971010_11_7 Chr1 12971010 13213259 trans Chr1 15818071 17294082 30.55974 13032250 13210900 15882137 17229198 2 0.0117776959882 0.0 0.161544766603 0.486513486513 2 0.0 8.0 0.468531468531 4_mt.0_11021976_12_1 Chr4 11021976 11208368 cis Chr4 8279506 11148048 45.03604 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_mt.0_11021976_12_1 Chr4 11021976 11208368 cis Chr4 11148268 11755745 16.58857 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_mt.0_11021976_12_1 Chr4 11021976 11208368 trans Chr4 7913215 8279013 8.546238 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ct.1_1241304_11_3 Chr4 1241304 1390878 trans Chr4 1391168 1653170 41.71588 1311157 1391924 1391168 1478869 52 0.244251320144 0.0 0.128270302484 0.00799200799201 10 0.0 7.0 0.011988011988 4_ct.1_1241304_11_3 Chr4 1241304 1390878 trans Chr4 2411208 2614904 25.30911 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ct.1_1241304_11_3 Chr4 1241304 1390878 trans Chr4 978 1235006 25.11516 1270626 1343010 426739 1007086 2 0.0040354767184 0.0 0.133884938591 0.778221778222 2 0.0 8.0 0.497502497502 3_oy.0_13612284_17_14 Chr3 13612284 13983577 overlap Chr3 13664439 13957094 21.02586 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_oy.0_13612284_17_14 Chr3 13612284 13983577 overlap Chr3 13958172 13959530 6.085838 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_oy.0_13612284_17_14 Chr3 13612284 13983577 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_14374281_12_7 Chr3 14374281 14532707 trans Chr1 9481241 9592909 12.69408 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_14374281_12_7 Chr3 14374281 14532707 trans Chr1 6592104 6655570 11.54077 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_14374281_12_7 Chr3 14374281 14532707 trans Chr5 270391 271084 10.027 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_mt.0_19850543_12_1 Chr3 19850543 19991329 trans Chr3 16867032 19702752 237.9534 19880002 19883293 17010919 18841595 1 0.00925925925926 0.0 0.110484242659 0.595404595405 1 0.0 7.0 0.821178821179 3_mt.0_19850543_12_1 Chr3 19850543 19991329 cis Chr3 19963316 22140656 235.109 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_mt.0_19850543_12_1 Chr3 19850543 19991329 cis Chr3 19843816 19953383 233.5062 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_mt.0_17035475_14_5 Chr5 17035475 17096546 cis Chr5 16723527 17034475 71.51981 17034486 17034613 17034362 17034413 5 0.22619047619 0.0 0.0714285714286 0.000999000999001 4 0.0 1.0 0.001998001998 5_mt.0_17035475_14_5 Chr5 17035475 17096546 cis Chr5 17097546 17645029 71.51981 17088645 17097591 17097598 17327058 9 0.0286874417652 0.0 0.100481465531 0.165834165834 7 0.0 10.0 0.0649350649351 5_mt.0_17035475_14_5 Chr5 17035475 17096546 trans Chr5 17755778 18167016 34.66789 17087493 17087544 17885709 17885760 1 0.0714285714286 0.0 0.047619047619 0.023976023976 1 0.0 1.0 0.0519480519481 5_mt.0_17035475_14_5 Chr5 17035475 17096546 trans Chr5 15643009 16335502 22.11835 17043816 17043867 16031310 16031361 1 0.0357142857143 0.0 0.0714285714286 0.0559440559441 1 0.0 1.0 0.0579420579421 3_tsu.0_13140729_15_8 Chr3 13140729 13213517 overlap Chr3 13203918 13212106 19.03335 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_13140729_15_8 Chr3 13140729 13213517 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_13140729_15_8 Chr3 13140729 13213517 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_17454522_24_1 Chr3 17454522 17535108 cis Chr3 16122840 17453522 57.30831 17453482 17530138 16209685 17453563 20 0.0376119119838 0.0 0.102786427341 0.112887112887 14 0.0 14.0 0.032967032967 3_bur.0_17454522_24_1 Chr3 17454522 17535108 cis Chr3 17536108 18978676 57.30831 17477677 17536150 17536116 18358916 11 0.025073571996 0.0 0.110385781141 0.212787212787 9 0.0 15.0 0.0989010989011 3_bur.0_17454522_24_1 Chr3 17454522 17535108 trans Chr3 16038336 16109030 7.945672 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_17454522_24_1 Chr3 17454522 17535108 trans Chr5 16997342 17210640 7.752436 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_hi.0_4504316_16_12 Chr4 4504316 4614412 trans Chr2 1827628 6716612 18.13895 4504498 4613907 2106204 6555924 14 0.165397102897 0.0 0.12785467296 0.013986013986 11 0.0 10.0 0.020979020979 4_hi.0_4504316_16_12 Chr4 4504316 4614412 overlap Chr4 4595758 4604109 17.94437 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_hi.0_4504316_16_12 Chr4 4504316 4614412 overlap Chr4 4604402 4604464 14.20824 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_14274965_11_10 Chr3 14274965 14586250 overlap Chr3 14340229 14532301 59.28133 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_14274965_11_10 Chr3 14274965 14586250 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_14274965_11_10 Chr3 14274965 14586250 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_tsu.0_9879_10_4 Chr2 9879 293854 cis Chr2 1173 41926 23.03792 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_tsu.0_9879_10_4 Chr2 9879 293854 overlap Chr2 56424 57080 11.61914 0 0 0 0 0 0 0 inf 1 0 0 inf 1 2_tsu.0_9879_10_4 Chr2 9879 293854 trans Chr1 22009275 23602878 9.499513 41573 261288 22319405 22731504 3 0.0108931288032 0.0 0.132569421995 0.507492507493 3 0.0 7.0 0.181818181818 1_wil.2_18962350_14_13 Chr1 18962350 18972047 overlap Chr1 18962842 18970804 26.94121 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_wil.2_18962350_14_13 Chr1 18962350 18972047 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_wil.2_18962350_14_13 Chr1 18962350 18972047 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_4715884_11_4 Chr4 4715884 4763305 trans Chr5 14049842 14067675 15.06954 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_4715884_11_4 Chr4 4715884 4763305 trans Chr4 182432 182432 7.561657 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_4715884_11_4 Chr4 4715884 4763305 trans Chr4 194935 194935 7.457195 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_ler.0_6378068_11_10 Chr2 6378068 6799160 cis Chr2 71470 6785908 71.13339 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_ler.0_6378068_11_10 Chr2 6378068 6799160 cis Chr2 6788096 8527798 30.95298 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_ler.0_6378068_11_10 Chr2 6378068 6799160 trans Chr2 9298375 10618210 23.72782 6410714 6758117 9330598 10351381 2 0.0117647058824 0.0 0.142258975815 0.521478521479 2 0.0 7.0 0.466533466533 1_bur.0_15985622_11_11 Chr1 15985622 16113157 cis Chr1 15581912 16080255 88.24562 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_15985622_11_11 Chr1 15985622 16113157 trans Chr1 16113390 16942740 88.24562 15995080 16114206 16113392 16745795 29 0.153972427858 0.0 0.111298651299 0.017982017982 10 0.0 6.0 0.00599400599401 1_bur.0_15985622_11_11 Chr1 15985622 16113157 trans Chr1 12481225 14303701 79.63742 15985336 16114157 12602329 14210518 4 0.0139716126785 0.0 0.112442088181 0.415584415584 3 0.0 6.025 0.201798201798 4_zu.0_2584051_23_22 Chr4 2584051 2785838 cis Chr4 978 2583051 190.0369 2586041 2782937 50598 2582209 23 0.0897402660601 0.0 0.116382140818 0.037962037962 15 0.0 13.0 0.017982017982 4_zu.0_2584051_23_22 Chr4 2584051 2785838 cis Chr4 2786838 4378310 190.0369 2583999 2786887 2786857 4348786 33 0.0485936790779 0.0 0.113994178948 0.11988011988 17 0.0 14.0 0.010989010989 4_zu.0_2584051_23_22 Chr4 2584051 2785838 trans Chr4 4550735 6291338 73.73288 2593235 2779976 4579015 6215293 5 0.00859231136691 0.0 0.128577376761 0.679320679321 4 0.0 13.025 0.421578421578 4_zu.0_2584051_23_22 Chr4 2584051 2785838 trans Chr2 52366 55486 11.06083 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_po.0_9249192_11_2 Chr2 9249192 9280263 overlap Chr2 9249841 9277521 32.27585 0 0 0 0 0 0 0 inf 1 0 0 inf 1 2_po.0_9249192_11_2 Chr2 9249192 9280263 trans Chr2 9291888 10400820 11.33194 9262043 9262094 9765497 9765548 1 0.0909090909091 0.0 0.0613636363636 0.025974025974 1 0.0 1.0 0.047952047952 2_po.0_9249192_11_2 Chr2 9249192 9280263 trans Chr2 8565590 9231599 10.04826 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_14247351_11_5 Chr3 14247351 14285284 overlap Chr3 14273109 14285144 27.53541 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_14247351_11_5 Chr3 14247351 14285284 trans Chr3 21056198 23371191 24.99882 14248252 14285383 21233162 23089224 4 0.00740320051466 0.0 0.115524464571 0.607392607393 4 0.0 7.0 0.132867132867 3_tsu.0_14247351_11_5 Chr3 14247351 14285284 trans Chr3 20068242 20902076 10.01314 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_13141425_21_21 Chr3 13141425 13299223 overlap Chr3 13202284 13212768 32.5058 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_no.0_13141425_21_21 Chr3 13141425 13299223 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_13141425_21_21 Chr3 13141425 13299223 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_9479583_11_1 Chr4 9479583 9581314 overlap Chr4 9576692 9581005 23.49362 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_9479583_11_1 Chr4 9479583 9581314 trans Chr4 10359466 10423768 15.54264 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_9479583_11_1 Chr4 9479583 9581314 cis Chr4 8928831 9480346 15.38702 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_po.0_15584330_10_7 Chr1 15584330 15988533 cis Chr1 15585439 16078066 82.5622 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_po.0_15584330_10_7 Chr1 15584330 15988533 trans Chr1 12435217 14303701 73.49759 15586254 15986858 12677693 14260080 6 0.0216272422155 0.0 0.102046962593 0.277722277722 4 0.0 5.025 0.0799200799201 1_po.0_15584330_10_7 Chr1 15584330 15988533 trans Chr1 16113390 16942740 66.12316 15671679 15917110 16113621 16626183 2 0.0309523809524 0.0 0.119240539452 0.190809190809 2 0.0 6.0 0.307692307692 3_bur.0_21870955_10_10 Chr3 21870955 22048627 trans Chr3 17838473 19850282 148.2512 21943180 21943231 18265725 18265776 1 0.1 0.0 0.0666666666667 0.017982017982 1 0.0 1.0 0.047952047952 3_bur.0_21870955_10_10 Chr3 21870955 22048627 cis Chr3 19995870 21869955 118.3845 21870021 22043857 20271779 21869898 3 0.0147869674185 0.0 0.140007783883 0.435564435564 3 0.0 8.0 0.254745254745 3_bur.0_21870955_10_10 Chr3 21870955 22048627 cis Chr3 22049627 22349052 118.3845 22049482 22049641 22049634 22049865 4 0.32 0.0 0.1 0.000999000999001 4 0.0 1.0 0.002997002997 3_bur.0_21870955_10_10 Chr3 21870955 22048627 trans Chr3 22466444 23371191 28.65756 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_wu.0_12716155_21_1 Chr5 12716155 12792817 cis Chr5 8186738 12715155 50.93298 12715106 12793859 8440572 12715192 31 0.0380832599886 0.0 0.140350435345 0.150849150849 12 0.0 14.025 0.046953046953 5_wu.0_12716155_21_1 Chr5 12716155 12792817 cis Chr5 12793817 17756950 50.93298 12716338 12793849 12793935 16931889 7 0.00811438574351 0.0 0.114421154317 0.686313686314 6 0.0 13.0 0.188811188811 5_wu.0_12716155_21_1 Chr5 12716155 12792817 trans Chr5 18210729 18778114 8.525094 12733384 12733435 18520921 18520972 1 0.0238095238095 0.0 0.047619047619 0.0809190809191 1 0.0 2.0 0.0849150849151 5_wu.0_12716155_21_1 Chr5 12716155 12792817 trans Chr5 17758406 18158589 7.799069 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_6907428_12_2 Chr4 6907428 7103401 cis Chr4 5789131 6906428 67.34992 6906386 7034339 6065488 6906470 8 0.0305611785875 0.0 0.0993065799689 0.205794205794 4 0.0 7.0 0.177822177822 4_wu.0_6907428_12_2 Chr4 6907428 7103401 cis Chr4 7104401 8450259 67.34992 6943929 7104448 7104430 8421434 11 0.0432678597005 0.0 0.111077099596 0.121878121878 8 0.0 8.0 0.03996003996 4_wu.0_6907428_12_2 Chr4 6907428 7103401 trans Chr4 5123342 5779401 19.015 6974531 7034020 5360986 5645081 2 0.0119565217391 0.0 0.140233391336 0.515484515485 2 0.0 9.0 0.57042957043 4_wu.0_6907428_12_2 Chr4 6907428 7103401 trans Chr4 9585571 10161502 16.93625 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_ct.1_26118057_11_1 Chr1 26118057 26214654 cis Chr1 24695005 26117057 47.03917 26117026 26117278 26116846 26117051 9 0.328282828283 0.0 0.104924242424 0.002997002997 5 0.0 2.0 0.00599400599401 1_ct.1_26118057_11_1 Chr1 26118057 26214654 cis Chr1 26215654 26921601 47.03917 26215501 26215683 26215663 26215870 9 0.35 0.0 0.0909090909091 0.000999000999001 5 0.0 1.0 0.004995004995 1_ct.1_26118057_11_1 Chr1 26118057 26214654 trans Chr1 26921629 29858357 30.31737 26196065 26196116 28337472 28337523 1 0.0454545454545 0.0 0.0606060606061 0.036963036963 1 0.0 1.0 0.040959040959 1_ct.1_26118057_11_1 Chr1 26118057 26214654 trans Chr1 24549269 24694485 12.03273 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ler.0_14486922_10_5 Chr3 14486922 14552165 overlap Chr3 14498048 14534452 24.83343 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_ler.0_14486922_10_5 Chr3 14486922 14552165 trans Chr1 8352744 9115133 12.61001 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ler.0_14486922_10_5 Chr3 14486922 14552165 trans Chr1 15536209 16460678 11.73635 14489133 14550947 15576568 16396719 4 0.0299465240642 0.0 0.116384324824 0.180819180819 2 0.0 6.025 0.396603396603 3_rsch.4_14475909_10_2 Chr3 14475909 14541569 overlap Chr3 14476068 14534078 39.53362 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_rsch.4_14475909_10_2 Chr3 14475909 14541569 trans Chr2 5944392 5985516 12.26734 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_rsch.4_14475909_10_2 Chr3 14475909 14541569 trans Chr4 10398807 10423768 7.475921 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_ler.0_8378482_43_41 Chr5 8378482 8451217 overlap Chr5 8448428 8451180 51.3141 0 0 0 0 0 0 0 inf 1 0 0 inf 1 5_ler.0_8378482_43_41 Chr5 8378482 8451217 trans Chr1 12448569 16911960 15.83202 8388489 8451267 12621113 16598162 37 0.00513977707686 0.00256303773746 0.114230099198 0.89010989011 22 1.0 24.0 0.036963036963 5_ler.0_8378482_43_41 Chr5 8378482 8451217 overlap Chr5 8445839 8445839 7.81316 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_kn.0_18962127_12_9 Chr1 18962127 18970324 overlap Chr1 18962127 18967659 22.88752 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_kn.0_18962127_12_9 Chr1 18962127 18970324 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_kn.0_18962127_12_9 Chr1 18962127 18970324 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_sf.2_19024164_10_1 Chr1 19024164 19081523 cis Chr1 17214782 19023164 31.40417 19023154 19041195 17476439 19023184 6 0.0267883022774 0.0 0.1098539328 0.267732267732 5 0.0 6.025 0.0809190809191 1_sf.2_19024164_10_1 Chr1 19024164 19081523 cis Chr1 19082523 24175253 31.40417 19027002 19082556 19082533 20679089 8 0.0393942577031 0.0 0.130656011017 0.146853146853 5 0.0 7.0 0.0809190809191 1_sf.2_19024164_10_1 Chr1 19024164 19081523 trans Chr5 22288679 22360369 11.36303 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_sf.2_19024164_10_1 Chr1 19024164 19081523 trans Chr4 11765871 11766028 9.333848 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_11966690_11_2 Chr4 11966690 12118544 cis Chr4 11440394 11965690 230.2479 11965781 11965922 11965579 11965716 4 0.143939393939 0.0 0.0909090909091 0.00799200799201 3 0.0 1.0 0.00599400599401 4_edi.0_11966690_11_2 Chr4 11966690 12118544 cis Chr4 12119544 13527729 230.2479 12117766 12119580 12119573 12148637 12 0.107030747031 0.0 0.130741505969 0.042957042957 7 0.0 5.025 0.014985014985 4_edi.0_11966690_11_2 Chr4 11966690 12118544 trans Chr4 10660879 10935436 93.06443 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_11966690_11_2 Chr4 11966690 12118544 trans Chr4 10423617 10582473 55.53639 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_po.0_5621237_15_4 Chr2 5621237 5989439 cis Chr2 72719 5943875 121.0921 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_po.0_5621237_15_4 Chr2 5621237 5989439 trans Chr2 6180702 8087426 56.04784 5622140 5971486 6190271 7854847 9 0.0285766945855 0.0 0.0959628055646 0.138861138861 6 0.0 8.0 0.0579420579421 2_po.0_5621237_15_4 Chr2 5621237 5989439 trans Chr2 5989647 6177312 7.810919 5731530 5990487 5989650 6124600 51 0.212655502468 0.0 0.129740750047 0.00799200799201 13 0.0 9.025 0.010989010989 2_mt.0_6716905_10_6 Chr2 6716905 6729453 overlap Chr2 6718317 6725841 42.4058 0 0 0 0 0 0 0 inf 1 0 0 inf 1 2_mt.0_6716905_10_6 Chr2 6716905 6729453 trans Chr3 13202124 13204296 6.884009 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_mt.0_6716905_10_6 Chr2 6716905 6729453 trans Chr3 11196940 11238031 6.526046 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_4712292_49_26 Chr4 4712292 4782538 overlap Chr4 4760214 4768356 39.55334 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_4712292_49_26 Chr4 4712292 4782538 trans Chr2 1978499 5104464 8.228328 4711951 4782124 2052065 5104371 55 0.00954946263799 0.00225591817187 0.124305656155 0.637362637363 26 1.975 28.0 0.031968031968 4_wu.0_4712292_49_26 Chr4 4712292 4782538 trans Chr2 5238111 5430389 7.520755 4716968 4779189 5241863 5380214 12 0.0260721134332 0.00185234666989 0.0850915707398 0.178821178821 10 1.0 23.025 0.207792207792 3_edi.0_1429685_14_7 Chr3 1429685 1456264 cis Chr3 98 1428685 50.75274 1428638 1429095 1428476 1428723 6 0.0837301587302 0.0 0.0833333333333 0.024975024975 4 0.0 3.0 0.015984015984 3_edi.0_1429685_14_7 Chr3 1429685 1456264 cis Chr3 1457264 7911530 50.75274 1444900 1457233 1457271 7274739 5 0.0381673881674 0.0 0.12263204271 0.133866133866 4 0.0 9.0 0.176823176823 3_edi.0_1429685_14_7 Chr3 1429685 1456264 trans Chr3 8198146 8714889 9.735919 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_edi.0_1429685_14_7 Chr3 1429685 1456264 trans Chr3 7944702 7997918 7.145382 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_sf.2_26921629_26_7 Chr1 26921629 26923228 cis Chr1 24181436 26920629 180.5699 26920583 26920910 26920094 26920667 25 0.356868131868 0.0 0.0690064102564 0.000999000999001 18 0.0 4.0 0.001998001998 1_sf.2_26921629_26_7 Chr1 26921629 26923228 cis Chr1 26924228 30393001 180.5699 26923985 26924278 26924255 26924578 13 0.172435897436 0.0 0.0769230769231 0.00599400599401 11 0.0 4.0 0.002997002997 1_sf.2_26921629_26_7 Chr1 26921629 26923228 trans Chr1 23653574 24172153 9.019642 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_sf.2_26921629_26_7 Chr1 26921629 26923228 trans Chr1 22477992 22627566 7.112926 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_4699956_12_8 Chr4 4699956 4781195 overlap Chr4 4739069 4768617 44.27315 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_4699956_12_8 Chr4 4699956 4781195 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_4699956_12_8 Chr4 4699956 4781195 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_sf.2_1025_13_6 Chr4 1025 126052 cis Chr4 978 25 101.1984 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_sf.2_1025_13_6 Chr4 1025 126052 cis Chr4 127052 126057 101.1984 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_sf.2_1025_13_6 Chr4 1025 126052 trans Chr4 130641 1463256 24.5996 35441 124995 660412 691588 1 0.003663003663 0.0 0.112979198089 0.822177822178 1 0.0 6.0 0.831168831169 4_sf.2_1025_13_6 Chr4 1025 126052 trans Chr4 128432 128489 10.21882 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ler.0_4489862_10_5 Chr4 4489862 4587621 overlap Chr4 4523244 4571011 8.683446 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_ler.0_4489862_10_5 Chr4 4489862 4587621 trans Chr4 11766028 11766028 8.254649 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ler.0_4489862_10_5 Chr4 4489862 4587621 trans Chr3 21866749 21873661 7.298414 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wil.2_4288786_17_15 Chr4 4288786 4377333 trans Chr4 4604382 5579463 24.74484 4289718 4373014 4730074 5567432 10 0.00917698079636 0.0 0.112253466031 0.631368631369 6 0.0 11.0 0.124875124875 4_wil.2_4288786_17_15 Chr4 4288786 4377333 cis Chr4 1679257 4319671 23.90267 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wil.2_4288786_17_15 Chr4 4288786 4377333 trans Chr4 1261675 1653929 10.85017 4309874 4311512 1540771 1541301 10 0.00760653994819 0.0 0.0938945497248 0.529470529471 7 0.0 6.025 0.025974025974 4_hi.0_18209079_11_4 Chr4 18209079 18412791 cis Chr4 18182077 18208079 38.48946 18208030 18208426 18207819 18208126 7 0.170454545455 0.0 0.0909090909091 0.00699300699301 4 0.0 2.0 0.00699300699301 4_hi.0_18209079_11_4 Chr4 18209079 18412791 cis Chr4 18413791 18519040 38.48946 18413761 18413832 18413907 18413993 2 0.136363636364 0.0 0.0606060606061 0.003996003996 2 0.0 1.0 0.010989010989 4_hi.0_18209079_11_4 Chr4 18209079 18412791 trans Chr4 17141068 18009184 25.09139 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_hi.0_18209079_11_4 Chr4 18209079 18412791 trans Chr4 12147601 16645889 14.56825 18232443 18268459 12809166 16055123 5 0.0206193806194 0.0 0.124575801121 0.324675324675 3 0.0 7.0 0.222777222777 1_no.0_15651990_14_12 Chr1 15651990 15758689 overlap Chr1 15662233 15747940 18.43229 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_no.0_15651990_14_12 Chr1 15651990 15758689 trans Chr2 5511144 8528873 17.9758 15682283 15754768 5577700 7692210 2 0.107142857143 0.0 0.116709401651 0.036963036963 2 0.0 8.0 0.563436563437 1_no.0_15651990_14_12 Chr1 15651990 15758689 trans Chr2 8983613 9566083 10.53614 15663474 15740531 9025943 9313029 1 0.00396825396825 0.0 0.112263930842 0.776223776224 1 0.0 8.0 0.813186813187 4_wu.0_2393103_22_8 Chr4 2393103 2495982 cis Chr4 978 2392103 143.0829 2392074 2464322 2176898 2392132 19 0.0547000172332 0.0 0.122041893622 0.0969030969031 12 0.0 13.0 0.034965034965 4_wu.0_2393103_22_8 Chr4 2393103 2495982 cis Chr4 2496982 7081255 143.0829 2430808 2497027 2496996 6985214 16 0.0462279447028 0.0 0.10560139412 0.0869130869131 11 0.0 13.0 0.04995004995 4_wu.0_2393103_22_8 Chr4 2393103 2495982 trans Chr4 7081793 7143890 11.45939 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_2393103_22_8 Chr4 2393103 2495982 trans Chr2 52366 55486 9.758598 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_14328742_29_17 Chr3 14328742 14540187 overlap Chr3 14340229 14524563 49.23725 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_14328742_29_17 Chr3 14328742 14540187 trans Chr4 713659 713710 7.001989 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_14328742_29_17 Chr3 14328742 14540187 overlap Chr3 14528325 14528325 6.016574 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_4588628_24_15 Chr4 4588628 4741601 overlap Chr4 4606735 4712292 32.97482 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_4588628_24_15 Chr4 4588628 4741601 cis Chr4 4740277 4763095 9.627244 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_4588628_24_15 Chr4 4588628 4741601 trans Chr4 1245029 1303649 9.611357 4663645 4738840 1287732 1288044 2 0.00438034188034 0.0 0.0713766221497 0.695304695305 2 0.0 12.0 0.58041958042 4_wu.0_4550735_12_9 Chr4 4550735 4627281 overlap Chr4 4587607 4606058 10.04313 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_4550735_12_9 Chr4 4550735 4627281 trans Chr4 528694 714731 9.704518 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_4550735_12_9 Chr4 4550735 4627281 trans Chr4 1458275 1460183 9.498487 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_18962190_10_4 Chr1 18962190 19049695 cis Chr1 18309921 19049234 19.44516 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_18962190_10_4 Chr1 18962190 19049695 trans Chr1 19050522 21038305 11.98491 18998382 19050625 19050522 20278196 7 0.0394997986893 0.0 0.107919803686 0.124875124875 6 0.0 5.0 0.024975024975 1_bur.0_18962190_10_4 Chr1 18962190 19049695 trans Chr4 8634469 8645372 9.963048 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_14303544_24_15 Chr3 14303544 14475356 overlap Chr3 14340805 14438950 26.58509 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_14303544_24_15 Chr3 14303544 14475356 trans Chr3 14255728 14259888 6.813877 14455236 14461517 14257972 14258808 2 0.00330132052821 0.00148744256475 0.0902519698701 0.867132867133 2 1.0 14.0 0.818181818182 3_tsu.0_14303544_24_15 Chr3 14303544 14475356 trans Chr3 14284296 14284644 6.286853 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_bur.0_12680497_14_2 Chr5 12680497 12786242 cis Chr5 12229336 12692928 18.03814 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_bur.0_12680497_14_2 Chr5 12680497 12786242 overlap Chr5 12744965 12763281 11.14575 0 0 0 0 0 0 0 inf 1 0 0 inf 1 5_bur.0_12680497_14_2 Chr5 12680497 12786242 trans Chr5 17663145 17754916 10.78634 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_bur.0_1383644_16_6 Chr2 1383644 1392752 cis Chr2 627041 1382644 92.75768 1382615 1393618 896282 1382663 15 0.053939052541 0.0 0.101552979346 0.0839160839161 11 0.0 10.0 0.016983016983 2_bur.0_1383644_16_6 Chr2 1383644 1392752 cis Chr2 1393752 1618413 92.75768 1388652 1393793 1393767 1614813 21 0.031538735425 0.0 0.10370087241 0.173826173826 13 0.0 10.0 0.00999000999001 2_bur.0_1383644_16_6 Chr2 1383644 1392752 trans Chr4 16632369 16632369 8.646579 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_bur.0_1383644_16_6 Chr2 1383644 1392752 trans Chr2 1934180 2069878 6.964311 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_14238624_13_10 Chr3 14238624 14284644 trans Chr3 12785193 13955473 49.19243 14237905 14270306 12996701 13947121 5 0.010949517534 0.0 0.137364251668 0.55044955045 4 0.0 10.0 0.175824175824 3_no.0_14238624_13_10 Chr3 14238624 14284644 cis Chr3 14255403 17035376 39.46996 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_14238624_13_10 Chr3 14238624 14284644 cis Chr3 13980619 14245383 36.03283 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_tsu.0_10018836_16_9 Chr5 10018836 10087202 overlap Chr5 10028302 10077106 25.968 0 0 0 0 0 0 0 inf 1 0 0 inf 1 5_tsu.0_10018836_16_9 Chr5 10018836 10087202 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_tsu.0_10018836_16_9 Chr5 10018836 10087202 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_can.0_3724275_14_8 Chr4 3724275 3729322 cis Chr4 3722888 3723275 71.51981 3723291 3723481 3722989 3723286 9 0.297619047619 0.0 0.0833928571429 0.001998001998 5 0.0 2.0 0.004995004995 4_can.0_3724275_14_8 Chr4 3724275 3729322 cis Chr4 3730322 3729614 71.51981 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_can.0_3724275_14_8 Chr4 3724275 3729322 trans Chr2 689645 7327479 33.81608 3725820 3729321 1108309 6461641 18 0.0333203883975 0.0 0.103646861364 0.207792207792 9 0.0 7.0 0.015984015984 4_can.0_3724275_14_8 Chr4 3724275 3729322 trans Chr2 1173 182250 8.478676 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_wil.2_14444678_20_6 Chr3 14444678 14539826 overlap Chr3 14484545 14532971 23.26309 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_wil.2_14444678_20_6 Chr3 14444678 14539826 trans Chr4 133852 4314689 21.24213 14444031 14540818 1549538 4295115 28 0.0926506132756 0.0 0.118400661603 0.037962037962 15 0.0 13.0 0.016983016983 3_wil.2_14444678_20_6 Chr3 14444678 14539826 trans Chr4 4767258 6253391 19.60739 14444694 14538129 4780054 6209142 5 0.0445238095238 0.0 0.104486003737 0.0919080919081 5 0.0 12.0 0.185814185814 4_po.0_2414277_20_2 Chr4 2414277 2617691 cis Chr4 978 2413277 141.9313 2413237 2617054 606899 2413325 15 0.044108202965 0.0 0.110546366668 0.100899100899 8 0.0 12.0 0.0829170829171 4_po.0_2414277_20_2 Chr4 2414277 2617691 cis Chr4 2618691 4367511 141.9313 2469414 2618721 2618702 4348786 7 0.0197082697686 0.0 0.122720601712 0.316683316683 7 0.0 12.025 0.0989010989011 4_po.0_2414277_20_2 Chr4 2414277 2617691 trans Chr4 4550735 7081255 95.41578 2430808 2613711 4645559 6985214 2 0.0375 0.0 0.106884518421 0.13986013986 2 0.0 11.0 0.717282717283 4_po.0_2414277_20_2 Chr4 2414277 2617691 trans Chr2 52366 55486 11.41061 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_hi.0_6145286_18_13 Chr2 6145286 6393882 cis Chr2 6174916 8451105 64.27178 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_hi.0_6145286_18_13 Chr2 6145286 6393882 trans Chr2 2305758 4785297 36.45444 6153577 6390597 2306229 4751296 6 0.124202957536 0.0 0.108020262463 0.017982017982 5 0.0 10.0 0.160839160839 2_hi.0_6145286_18_13 Chr2 6145286 6393882 trans Chr2 5006039 5952810 27.64973 6177356 6389721 5015772 5824293 7 0.0231477586911 0.0 0.124577899484 0.182817182817 6 0.0 12.0 0.118881118881 2_po.0_9879_28_7 Chr2 9879 72727 cis Chr2 1173 68063 60.62478 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_po.0_9879_28_7 Chr2 9879 72727 trans Chr4 506463 6714903 56.61946 9097 72734 1543508 6535825 33 0.00165952301387 0.0 0.113936046327 0.951048951049 16 0.0 17.0 0.036963036963 2_po.0_9879_28_7 Chr2 9879 72727 trans Chr4 6728727 7230125 13.16701 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_can.0_14285354_18_16 Chr3 14285354 14538449 overlap Chr3 14326765 14522311 79.77266 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_can.0_14285354_18_16 Chr3 14285354 14538449 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_can.0_14285354_18_16 Chr3 14285354 14538449 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_hi.0_9483855_19_16 Chr4 9483855 9580501 cis Chr4 7784839 9482855 47.47193 9482809 9556098 8319251 9482889 19 0.0545818581161 0.0 0.136798273893 0.0949050949051 10 0.0 12.0 0.044955044955 4_hi.0_9483855_19_16 Chr4 9483855 9580501 cis Chr4 9581501 11520649 47.47193 9483717 9581530 9581527 10923054 4 0.0210053319573 0.0 0.101005674526 0.325674325674 4 0.0 11.0 0.300699300699 4_hi.0_9483855_19_16 Chr4 9483855 9580501 trans Chr4 4721893 4722659 9.125621 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_hi.0_9483855_19_16 Chr4 9483855 9580501 trans Chr4 4720602 4721762 7.003105 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wil.2_4317214_12_8 Chr4 4317214 4571168 overlap Chr4 4353163 4504288 16.13113 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_wil.2_4317214_12_8 Chr4 4317214 4571168 overlap Chr4 4504346 4504354 8.707551 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_wil.2_4317214_12_8 Chr4 4317214 4571168 overlap Chr4 4504363 4504363 8.031171 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_can.0_4595661_10_7 Chr4 4595661 4685479 overlap Chr4 4617840 4634606 35.89998 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_can.0_4595661_10_7 Chr4 4595661 4685479 trans Chr2 16686900 16686937 10.45398 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_can.0_4595661_10_7 Chr4 4595661 4685479 trans Chr1 5885969 6591705 7.275172 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ct.1_4591718_13_7 Chr4 4591718 4763745 overlap Chr4 4598000 4763106 47.61895 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_ct.1_4591718_13_7 Chr4 4591718 4763745 trans Chr4 4768520 6721900 25.50046 4599150 4759811 4778600 6531773 8 0.025733098508 0.0 0.130654232847 0.250749250749 7 0.0 9.0 0.0729270729271 4_ct.1_4591718_13_7 Chr4 4591718 4763745 trans Chr4 1270812 4234878 18.69816 4592623 4764183 1287893 4234617 24 0.0935216579623 0.0 0.113936639574 0.03996003996 10 0.0 9.0 0.023976023976 5_po.0_8409069_87_8 Chr5 8409069 8488878 overlap Chr5 8439267 8451240 120.4531 0 0 0 0 0 0 0 inf 1 0 0 inf 1 5_po.0_8409069_87_8 Chr5 8409069 8488878 trans Chr1 11147801 18962754 49.2317 8410840 8488502 11472729 18833063 94 0.00473692024558 0.00376661982488 0.105871225084 0.952047952048 51 4.0 52.0 0.028971028971 5_po.0_8409069_87_8 Chr5 8409069 8488878 trans Chr1 10930436 11146675 7.675546 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_sf.2_4504329_11_7 Chr4 4504329 4635890 overlap Chr4 4552962 4596081 18.25709 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_sf.2_4504329_11_7 Chr4 4504329 4635890 trans Chr5 11483246 11642917 10.10463 4503565 4567079 11528639 11587850 8 0.0474450314576 0.0 0.112299926188 0.106893106893 7 0.0 7.0 0.034965034965 4_sf.2_4504329_11_7 Chr4 4504329 4635890 trans Chr5 272102 272102 8.545232 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_4209623_25_25 Chr4 4209623 4358207 cis Chr4 151500 4208623 103.5983 4208586 4357330 464461 4208597 19 0.0914506604507 0.0 0.133860136759 0.041958041958 14 0.0 15.025 0.040959040959 4_wu.0_4209623_25_25 Chr4 4209623 4358207 cis Chr4 4359207 7768297 103.5983 4209737 4359257 4359229 6479633 16 0.0344921484201 0.0 0.105827003391 0.142857142857 13 0.0 15.0 0.043956043956 4_wu.0_4209623_25_25 Chr4 4209623 4358207 trans Chr4 129553 129553 7.095265 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_4209623_25_25 Chr4 4209623 4358207 trans Chr4 7947806 8012099 6.412716 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_tsu.0_4570950_13_5 Chr4 4570950 4642805 trans Chr4 8674620 10599945 10.69544 4633760 4636486 9404143 10427325 2 0.025 0.0 0.123625375616 0.25974025974 2 0.0 9.0 0.578421578422 4_tsu.0_4570950_13_5 Chr4 4570950 4642805 overlap Chr4 4633681 4633834 9.016178 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_tsu.0_4570950_13_5 Chr4 4570950 4642805 trans Chr4 10621629 10621630 6.032535 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_sf.2_14443842_29_15 Chr3 14443842 14539881 overlap Chr3 14519998 14531020 12.87271 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_sf.2_14443842_29_15 Chr3 14443842 14539881 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_sf.2_14443842_29_15 Chr3 14443842 14539881 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_ler.0_5928579_11_11 Chr2 5928579 6272369 cis Chr2 6207877 7159821 89.69676 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_ler.0_5928579_11_11 Chr2 5928579 6272369 trans Chr2 5542391 5915177 48.43226 5946757 6270522 5579920 5865929 8 0.0297472019111 0.0 0.116770901479 0.22977022977 7 0.0 7.0 0.028971028971 2_ler.0_5928579_11_11 Chr2 5928579 6272369 trans Chr2 1827794 5002947 41.34342 5945288 6272412 1849118 4969218 8 0.0289877311821 0.0 0.141034684278 0.236763236763 4 0.0 7.0 0.158841158841 3_no.0_14484545_21_16 Chr3 14484545 14620672 overlap Chr3 14522522 14551916 38.46495 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_no.0_14484545_21_16 Chr3 14484545 14620672 trans Chr5 17755150 17755324 6.561121 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_14484545_21_16 Chr3 14484545 14620672 overlap Chr3 14521351 14521678 6.293015 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_ws.0_12941409_13_10 Chr3 12941409 13161942 overlap Chr3 12979893 13107060 20.96092 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_ws.0_12941409_13_10 Chr3 12941409 13161942 trans Chr4 2844565 2983457 11.00055 12946341 13122314 2852644 2979257 6 0.0819685690653 0.0 0.117564282209 0.0519480519481 5 0.0 9.0 0.107892107892 3_ws.0_12941409_13_10 Chr3 12941409 13161942 trans Chr3 7882060 7900885 10.1319 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_can.0_23019131_20_2 Chr3 23019131 23019491 cis Chr3 19826026 23018131 60.83889 23018082 23018370 23017654 23018158 25 0.411388888889 0.0 0.0866666666667 0.000999000999001 16 0.0 4.0 0.001998001998 3_can.0_23019131_20_2 Chr3 23019131 23019491 cis Chr3 23020491 23371191 60.83889 23020243 23020529 23020501 23020738 12 0.2375 0.0 0.1 0.002997002997 9 0.0 3.0 0.003996003996 3_can.0_23019131_20_2 Chr3 23019131 23019491 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_can.0_23019131_20_2 Chr3 23019131 23019491 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_oy.0_4699641_31_10 Chr4 4699641 4778553 overlap Chr4 4763040 4768088 44.8839 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_oy.0_4699641_31_10 Chr4 4699641 4778553 trans Chr3 13573360 13806015 9.258562 4706625 4779111 13583998 13806055 19 0.0118712933836 0.00143291257597 0.0912339405386 0.498501498501 12 1.0 17.025 0.0789210789211 4_oy.0_4699641_31_10 Chr4 4699641 4778553 trans Chr3 13208806 13213030 7.820368 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ct.1_13891093_11_7 Chr3 13891093 14005267 overlap Chr3 13916050 13965194 10.70044 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_ct.1_13891093_11_7 Chr3 13891093 14005267 trans Chr4 182432 182432 8.527401 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ct.1_13891093_11_7 Chr3 13891093 14005267 trans Chr4 194935 194935 8.503252 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_sf.2_7158029_13_8 Chr2 7158029 7253306 cis Chr2 6207554 7157029 44.75793 7156994 7234361 6621436 7157043 5 0.0164348734091 0.0 0.126647160372 0.358641358641 4 0.0 8.0 0.15984015984 2_sf.2_7158029_13_8 Chr2 7158029 7253306 cis Chr2 7254306 8422824 44.75793 7176807 7254318 7254313 8019491 5 0.0341302841303 0.0 0.122286212444 0.160839160839 4 0.0 8.0 0.17982017982 2_sf.2_7158029_13_8 Chr2 7158029 7253306 trans Chr2 5651640 5905815 14.46161 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_sf.2_7158029_13_8 Chr2 7158029 7253306 trans Chr2 2724556 2729969 7.254938 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_14326026_13_9 Chr3 14326026 14539312 overlap Chr3 14328111 14510270 67.61949 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_14326026_13_9 Chr3 14326026 14539312 trans Chr2 6728385 7504861 34.81341 14329496 14329547 6898471 6898522 1 0.0769230769231 0.0 0.0519230769231 0.025974025974 1 0.0 1.0 0.047952047952 3_hi.0_14326026_13_9 Chr3 14326026 14539312 trans Chr2 6276144 6393521 20.3279 14473642 14473693 6329052 6329103 1 0.0769230769231 0.0 0.0769230769231 0.033966033966 1 0.0 1.0 0.047952047952 2_can.0_9251168_25_12 Chr2 9251168 9319678 cis Chr2 7213526 9250168 29.77679 9250139 9262098 7521770 9250208 24 0.0455031653017 0.0 0.10940339252 0.0739260739261 17 0.0 16.0 0.024975024975 2_can.0_9251168_25_12 Chr2 9251168 9319678 cis Chr2 9320678 10582229 29.77679 9269647 9320727 9320682 9681019 23 0.032553751732 0.0 0.123020588408 0.135864135864 15 0.0 15.0 0.026973026973 2_can.0_9251168_25_12 Chr2 9251168 9319678 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_can.0_9251168_25_12 Chr2 9251168 9319678 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_kn.0_714731_18_7 Chr4 714731 823210 cis Chr4 978 713731 68.49217 713696 792906 16707 713772 8 0.0244528679554 0.0 0.0942737728427 0.238761238761 7 0.0 11.0 0.100899100899 4_kn.0_714731_18_7 Chr4 714731 823210 cis Chr4 824210 1252957 68.49217 754101 824241 824220 968973 8 0.01881667715 0.0 0.0908684237362 0.35964035964 7 0.0 11.0 0.114885114885 4_kn.0_714731_18_7 Chr4 714731 823210 trans Chr4 1391168 1675607 38.83524 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_kn.0_714731_18_7 Chr4 714731 823210 trans Chr4 2419084 2782540 33.98751 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ws.0_14438409_49_11 Chr3 14438409 14551935 overlap Chr3 14474884 14486026 26.18563 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_ws.0_14438409_49_11 Chr3 14438409 14551935 trans Chr3 14375077 14425640 8.526383 14440030 14552077 14406575 14422019 2 0.00151565255732 0.00282557189257 0.0962987424743 0.993006993007 2 2.0 29.0 0.983016983017 3_ws.0_14438409_49_11 Chr3 14438409 14551935 overlap Chr3 14486842 14494450 8.200173 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_oy.0_13554998_13_10 Chr3 13554998 13983322 overlap Chr3 13580848 13923082 21.27154 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_oy.0_13554998_13_10 Chr3 13554998 13983322 trans Chr3 14374502 14474953 11.31831 13556277 13972908 14382100 14474836 4 0.0211148500622 0.0 0.0958970027144 0.263736263736 4 0.0 8.0 0.16983016983 3_oy.0_13554998_13_10 Chr3 13554998 13983322 trans Chr3 14475219 14475365 6.967863 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_tsu.0_18876821_18_13 Chr5 18876821 19304459 cis Chr5 15990823 18875821 127.1076 18875784 19273042 16665201 18875841 11 0.0327677683112 0.0 0.107944003145 0.14985014985 9 0.0 11.0 0.045954045954 5_tsu.0_18876821_18_13 Chr5 18876821 19304459 cis Chr5 19305459 19304889 127.1076 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_tsu.0_18876821_18_13 Chr5 18876821 19304459 trans Chr5 19306171 22084990 93.52445 18891418 19286222 19447711 21837339 4 0.0156822344322 0.0 0.109834439122 0.35964035964 4 0.0 11.0 0.230769230769 5_tsu.0_18876821_18_13 Chr5 18876821 19304459 trans Chr5 15098513 15099450 11.98979 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_hi.0_14073589_11_9 Chr5 14073589 14540455 cis Chr5 8584317 14072589 34.15305 14072544 14524101 9042349 14072557 6 0.026483320601 0.0 0.106507167084 0.217782217782 4 0.0 8.0 0.198801198801 5_hi.0_14073589_11_9 Chr5 14073589 14540455 cis Chr5 14541455 15092715 34.15305 14095703 14541492 14541482 15088950 10 0.0325325882217 0.0 0.107605321683 0.140859140859 7 0.0 8.0 0.0559440559441 5_hi.0_14073589_11_9 Chr5 14073589 14540455 trans Chr5 15354623 17177600 18.95112 14102624 14523948 15362368 17114257 3 0.0224416106769 0.0 0.114111899248 0.256743256743 3 0.0 8.0 0.328671328671 5_hi.0_14073589_11_9 Chr5 14073589 14540455 trans Chr5 15188689 15254475 8.063733 14399443 14519685 15198103 15207781 2 0.0204545454545 0.0 0.0998924701665 0.291708291708 2 0.0 7.025 0.566433566434 4_ct.1_1011_17_4 Chr4 1011 197666 cis Chr4 978 11 61.71947 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ct.1_1011_17_4 Chr4 1011 197666 cis Chr4 198666 4234878 61.71947 51535 198694 198667 3649761 10 0.0304092513737 0.0 0.0881408469306 0.16983016983 8 0.0 9.0 0.0679320679321 4_ct.1_1011_17_4 Chr4 1011 197666 trans Chr4 4635016 4763257 23.06147 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ct.1_1011_17_4 Chr4 1011 197666 trans Chr4 4768358 7193037 19.81368 3171 193577 4957627 7139642 4 0.029159467983 0.0 0.119530665545 0.192807192807 4 0.0 11.0 0.277722277722 1_ws.0_26135582_15_15 Chr1 26135582 26284496 cis Chr1 24803965 26134582 257.8615 26134550 26247944 24843380 26134585 13 0.075266955267 0.0 0.125682070942 0.048951048951 9 0.0 9.0 0.028971028971 1_ws.0_26135582_15_15 Chr1 26135582 26284496 cis Chr1 26285496 29266364 257.8615 26285238 26285511 26285496 26285757 6 0.194444444444 0.0 0.0666666666667 0.001998001998 4 0.0 2.0 0.00599400599401 1_ws.0_26135582_15_15 Chr1 26135582 26284496 trans Chr1 24303815 24699228 27.37494 26149813 26150654 24497611 24497711 2 0.0888888888889 0.0 0.0711111111111 0.021978021978 2 0.0 3.0 0.0849150849151 1_ws.0_26135582_15_15 Chr1 26135582 26284496 trans Chr1 23483343 23753847 14.20566 26285211 26285262 23729492 23729543 1 0.0666666666667 0.0 0.0666666666667 0.033966033966 1 0.0 1.0 0.0549450549451 4_kn.0_4454535_11_8 Chr4 4454535 4589018 trans Chr4 2840429 3943122 14.52284 4459889 4572896 2888295 3922058 6 0.0926295926296 0.0 0.124902211523 0.042957042957 4 0.0 7.025 0.154845154845 4_kn.0_4454535_11_8 Chr4 4454535 4589018 overlap Chr4 4505447 4506174 6.55313 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_kn.0_4454535_11_8 Chr4 4454535 4589018 trans Chr1 5950385 5979374 6.315442 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_wil.2_13970256_10_10 Chr3 13970256 14340231 overlap Chr3 14285318 14328717 27.73284 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_wil.2_13970256_10_10 Chr3 13970256 14340231 trans Chr3 10419623 13581021 24.91542 13971572 14339113 10860075 13553524 8 0.000176379675227 0.0 0.134708683473 0.749250749251 2 0.0 7.0 0.427572427572 3_wil.2_13970256_10_10 Chr3 13970256 14340231 overlap Chr3 13983280 14272331 24.91542 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_26881725_14_7 Chr1 26881725 26991702 cis Chr1 26745783 26880725 80.02128 26880689 26881024 26880508 26880746 4 0.192857142857 0.0 0.0714285714286 0.001998001998 4 0.0 2.0 0.00699300699301 1_bur.0_26881725_14_7 Chr1 26881725 26991702 cis Chr1 26992702 29266364 80.02128 26992462 26992746 26992714 26993006 5 0.255952380952 0.0 0.0714285714286 0.002997002997 5 0.0 2.0 0.003996003996 1_bur.0_26881725_14_7 Chr1 26881725 26991702 trans Chr1 26331434 26742674 42.86896 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_26881725_14_7 Chr1 26881725 26991702 trans Chr1 26138333 26280567 15.21884 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_10472449_10_7 Chr3 10472449 10485433 overlap Chr3 10479068 10483280 11.96693 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_no.0_10472449_10_7 Chr3 10472449 10485433 trans Chr2 57700 57700 9.71715 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_10472449_10_7 Chr3 10472449 10485433 trans Chr2 2344989 2344989 6.686893 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_po.0_4319643_10_8 Chr4 4319643 4722200 cis Chr4 4319642 4318643 90.52377 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_po.0_4319643_10_8 Chr4 4319643 4722200 cis Chr4 4723200 4763095 90.52377 4385001 4723244 4723229 4748011 4 0.103333333333 0.0 0.114764940813 0.02997002997 4 0.0 5.025 0.0799200799201 4_po.0_4319643_10_8 Chr4 4319643 4722200 trans Chr4 4768088 6180365 14.4293 4323135 4717712 4769213 6165519 4 0.00983585858586 0.0 0.114594040777 0.55044955045 4 0.0 6.0 0.0929070929071 4_po.0_4319643_10_8 Chr4 4319643 4722200 trans Chr4 1653418 4233417 13.61827 4320843 4710856 1658917 4219202 10 0.0432107072718 0.0 0.119139690925 0.13986013986 6 0.0 7.0 0.043956043956 2_po.0_6666263_10_2 Chr2 6666263 6797495 overlap Chr2 6691968 6795275 35.00048 0 0 0 0 0 0 0 inf 1 0 0 inf 1 2_po.0_6666263_10_2 Chr2 6666263 6797495 trans Chr2 5660828 5908503 11.46769 6733037 6779923 5827125 5904799 1 0.00260416666667 0.0 0.119230219666 0.746253746254 1 0.0 5.0 0.746253746254 2_po.0_6666263_10_2 Chr2 6666263 6797495 trans Chr2 6350706 6350706 7.510674 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_7647783_14_6 Chr4 7647783 7768694 cis Chr4 4839085 7646783 148.3952 7646746 7762664 5343160 7646771 5 0.0167705177309 0.0 0.140984634627 0.423576423576 5 0.0 10.0 0.152847152847 4_edi.0_7647783_14_6 Chr4 7647783 7768694 cis Chr4 7769694 8539521 148.3952 7769510 7769710 7769735 7769844 6 0.214285714286 0.0 0.0714285714286 0.002997002997 5 0.0 2.0 0.003996003996 4_edi.0_7647783_14_6 Chr4 7647783 7768694 trans Chr4 9585571 10307488 17.56948 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_7647783_14_6 Chr4 7647783 7768694 trans Chr4 8774209 8926347 13.06288 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_13717699_10_5 Chr1 13717699 13825404 cis Chr1 13491348 13745060 40.8118 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_13717699_10_5 Chr1 13717699 13825404 trans Chr1 13827683 14043218 10.36184 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_13717699_10_5 Chr1 13717699 13825404 trans Chr1 13168652 13372626 10.07706 13784620 13784671 13299466 13299517 1 0.1 0.0 0.1 0.026973026973 1 0.0 1.0 0.047952047952 5_bur.0_17390673_13_4 Chr5 17390673 17491190 cis Chr5 17097371 17389673 60.26216 17389679 17438369 17342026 17389692 9 0.0265399088929 0.0 0.131159433515 0.198801198801 5 0.0 9.0 0.144855144855 5_bur.0_17390673_13_4 Chr5 17390673 17491190 cis Chr5 17492190 18156746 60.26216 17412804 17492217 17492199 18112663 11 0.0306334063887 0.0 0.124047671725 0.176823176823 7 0.0 9.0 0.0769230769231 5_bur.0_17390673_13_4 Chr5 17390673 17491190 trans Chr5 16503919 17034541 36.73376 17444077 17444128 16703862 16703913 1 0.0769230769231 0.0 0.0769230769231 0.031968031968 1 0.0 1.0 0.0679320679321 5_bur.0_17390673_13_4 Chr5 17390673 17491190 trans Chr5 18240505 18597053 23.907 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_po.0_813470_12_1 Chr4 813470 1261744 cis Chr4 714624 1253923 75.88689 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_po.0_813470_12_1 Chr4 813470 1261744 trans Chr4 1396166 1675614 32.0819 953901 953952 1650574 1650625 1 0.0277777777778 0.0 0.0833333333333 0.0519480519481 1 0.0 1.0 0.0559440559441 4_po.0_813470_12_1 Chr4 813470 1261744 trans Chr4 2487648 2782540 28.37254 848244 1234731 2505858 2781900 4 0.0230463980464 0.0 0.109893892501 0.288711288711 3 0.0 8.0 0.296703296703 3_ct.1_14374491_10_1 Chr3 14374491 14483419 overlap Chr3 14379490 14475575 38.82118 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_ct.1_14374491_10_1 Chr3 14374491 14483419 trans Chr5 26729078 26732448 6.848098 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ct.1_14374491_10_1 Chr3 14374491 14483419 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_13147272_10_6 Chr3 13147272 13247287 overlap Chr3 13206266 13212650 9.847087 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_13147272_10_6 Chr3 13147272 13247287 trans Chr5 256010 256010 8.704357 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_13147272_10_6 Chr3 13147272 13247287 trans Chr5 259377 259377 8.686677 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ler.0_4696358_16_6 Chr4 4696358 4768660 trans Chr5 20814458 20815457 9.363324 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ler.0_4696358_16_6 Chr4 4696358 4768660 trans Chr3 763281 763281 7.820254 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ler.0_4696358_16_6 Chr4 4696358 4768660 trans Chr4 3646914 3778796 7.746555 4700753 4768575 3658503 3747155 2 0.00657051282051 0.0 0.0996389768945 0.702297702298 2 0.0 9.0 0.682317682318 4_zu.0_112644_22_1 Chr4 112644 126478 cis Chr4 978 111644 67.6771 111644 113276 104165 111683 9 0.0310273100106 0.0 0.107192558903 0.162837162837 7 0.0 10.0 0.0639360639361 4_zu.0_112644_22_1 Chr4 112644 126478 cis Chr4 127478 641324 67.6771 127251 127520 127478 127821 11 0.331060606061 0.0 0.0757575757576 0.000999000999001 11 0.0 2.0 0.000999000999001 4_zu.0_112644_22_1 Chr4 112644 126478 trans Chr4 658436 737506 7.417929 119636 124936 660409 660485 2 0.00358851674641 0.0 0.0424192158851 0.655344655345 2 0.0 8.0 0.347652347652 4_zu.0_112644_22_1 Chr4 112644 126478 trans Chr4 746973 747677 6.144528 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_can.0_6110834_10_9 Chr2 6110834 6178199 cis Chr2 979210 6109834 54.81278 6109834 6177685 1078920 6109820 9 0.266349206349 0.0 0.103382410963 0.004995004995 7 0.0 6.025 0.025974025974 2_can.0_6110834_10_9 Chr2 6110834 6178199 cis Chr2 6179199 6393521 54.81278 6167783 6179201 6179213 6182058 8 0.0288502996902 0.0 0.104202108073 0.167832167832 5 0.0 6.0 0.0569430569431 2_can.0_6110834_10_9 Chr2 6110834 6178199 trans Chr2 6870655 7270343 8.727507 6173578 6176076 6877513 7032639 2 0.00293865293865 0.0 0.101823069088 0.727272727273 2 0.0 6.0 0.413586413586 2_can.0_6110834_10_9 Chr2 6110834 6178199 trans Chr2 8800897 8982552 8.680485 6167870 6167921 8812867 8812918 1 0.05 0.0 0.0666666666667 0.035964035964 1 0.0 1.0 0.041958041958 5_zu.0_10020036_15_10 Chr5 10020036 10115500 cis Chr5 5667247 10082052 29.45921 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_zu.0_10020036_15_10 Chr5 10020036 10115500 trans Chr5 11659431 13977258 16.88424 10019153 10112340 11665053 13633449 7 0.0079705689785 0.0 0.124448650826 0.641358641359 7 0.0 10.0 0.0689310689311 5_zu.0_10020036_15_10 Chr5 10020036 10115500 cis Chr5 10087527 11629255 15.50451 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_mt.0_17806374_16_5 Chr4 17806374 18034051 cis Chr4 11268278 17805374 64.04828 17805340 17951214 11506745 17805388 15 0.0721478216297 0.0 0.126549239067 0.0629370629371 9 0.0 10.0 0.042957042957 4_mt.0_17806374_16_5 Chr4 17806374 18034051 cis Chr4 18035051 18519040 64.04828 18034747 18035053 18035087 18035257 8 0.148958333333 0.0 0.0781684027778 0.00699300699301 5 0.0 3.0 0.011988011988 4_mt.0_17806374_16_5 Chr4 17806374 18034051 trans Chr4 10639842 10999276 8.629079 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_mt.0_17806374_16_5 Chr4 17806374 18034051 trans Chr4 72640 72640 8.349957 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_sf.2_18962573_14_12 Chr1 18962573 18971290 overlap Chr1 18962754 18971094 36.7169 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_sf.2_18962573_14_12 Chr1 18962573 18971290 trans Chr4 4316672 4318801 7.996939 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_sf.2_18962573_14_12 Chr1 18962573 18971290 trans Chr1 18971499 18971499 6.513295 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_tsu.0_1011_14_6 Chr4 1011 126044 cis Chr4 978 125676 48.51671 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_tsu.0_1011_14_6 Chr4 1011 126044 trans Chr4 126646 1003563 39.30658 75454 127051 126657 660460 27 0.0769918335311 0.0 0.0990148242773 0.041958041958 10 0.0 8.0 0.014985014985 4_tsu.0_1011_14_6 Chr4 1011 126044 trans Chr4 1086748 1331317 12.79465 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_po.0_17456077_12_2 Chr5 17456077 17643447 cis Chr5 16550406 17455077 67.48215 17455057 17455652 17454871 17455108 15 0.132822039072 0.0 0.0944791666667 0.010989010989 6 0.0 3.0 0.00599400599401 5_po.0_17456077_12_2 Chr5 17456077 17643447 cis Chr5 17644447 18169709 67.48215 17532115 17644464 17644458 17864133 7 0.032956048581 0.0 0.121809271303 0.142857142857 6 0.0 8.0 0.0789210789211 5_po.0_17456077_12_2 Chr5 17456077 17643447 trans Chr5 18212011 18879013 37.49549 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_po.0_17456077_12_2 Chr5 17456077 17643447 trans Chr5 16381358 16461843 13.02004 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_oy.0_14468102_27_13 Chr3 14468102 14552325 overlap Chr3 14483383 14533787 33.09577 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_oy.0_14468102_27_13 Chr3 14468102 14552325 trans Chr2 1859413 6720491 17.11818 14467584 14553154 1896995 6575128 38 0.0351462725051 0.0 0.103288832455 0.151848151848 18 0.0 15.025 0.015984015984 3_oy.0_14468102_27_13 Chr3 14468102 14552325 trans Chr4 4590735 4604348 11.59608 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_tsu.0_5953923_10_4 Chr1 5953923 6026269 overlap Chr1 6009913 6013593 10.10028 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_tsu.0_5953923_10_4 Chr1 5953923 6026269 trans Chr1 4586992 4849192 9.523049 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_tsu.0_5953923_10_4 Chr1 5953923 6026269 trans Chr5 3715046 3715046 8.497638 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_can.0_6009619_11_8 Chr1 6009619 6074949 trans Chr1 11830247 18962607 54.60733 6009345 6047533 15997786 17070344 9 0.0286003380663 0.0 0.121558993394 0.267732267732 7 0.0 7.0 0.037962037962 1_can.0_6009619_11_8 Chr1 6009619 6074949 cis Chr1 6000509 6015130 43.82358 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_can.0_6009619_11_8 Chr1 6009619 6074949 trans Chr1 19049266 20514579 15.31167 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_sf.2_14328742_27_25 Chr3 14328742 14544490 overlap Chr3 14340007 14528339 61.56946 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_sf.2_14328742_27_25 Chr3 14328742 14544490 overlap Chr3 14337273 14337879 6.287299 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_sf.2_14328742_27_25 Chr3 14328742 14544490 overlap Chr3 14530411 14530738 6.220648 0 0 0 0 0 0 0 inf 1 0 0 inf 1 5_wu.0_14486019_14_12 Chr5 14486019 14909641 cis Chr5 8783283 14485019 50.75274 14485009 14904386 8875438 14485015 7 0.0072950329416 0.0 0.109332934024 0.673326673327 4 0.0 10.0 0.231768231768 5_wu.0_14486019_14_12 Chr5 14486019 14909641 cis Chr5 14910641 15111875 50.75274 14499081 14910691 14910647 15099690 14 0.0524455936221 0.0 0.0953957431716 0.0899100899101 8 0.0 9.0 0.046953046953 5_wu.0_14486019_14_12 Chr5 14486019 14909641 trans Chr5 15188689 18575792 30.449 14500681 14880302 15207313 18556256 4 0.0154500671742 0.0 0.12407901062 0.408591408591 3 0.0 10.0 0.386613386613 5_wu.0_14486019_14_12 Chr5 14486019 14909641 trans Chr5 15120649 15172351 6.949391 14499410 14499461 15146975 15147026 1 0.0714285714286 0.0 0.0714285714286 0.033966033966 1 0.0 1.0 0.0679320679321 1_ws.0_12603649_12_1 Chr1 12603649 12666813 overlap Chr1 12659798 12660199 27.86854 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_ws.0_12603649_12_1 Chr1 12603649 12666813 cis Chr1 12660454 12735241 8.797642 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_ws.0_12603649_12_1 Chr1 12603649 12666813 overlap Chr1 12607967 12659024 8.507154 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_16435661_12_2 Chr1 16435661 16485339 cis Chr1 11456833 16434661 88.29102 16434611 16478550 11704010 16434654 18 0.053604121557 0.0 0.13837577007 0.0809190809191 9 0.0 8.0 0.021978021978 1_bur.0_16435661_12_2 Chr1 16435661 16485339 cis Chr1 16486339 22174775 88.29102 16449897 16486372 16486350 19598360 9 0.0247772410091 0.0 0.105146352401 0.222777222777 7 0.0 8.0 0.0549450549451 1_bur.0_16435661_12_2 Chr1 16435661 16485339 trans Chr1 9747887 11440812 24.30508 16477882 16477933 10983890 10983941 1 0.0833333333333 0.0 0.0833333333333 0.031968031968 1 0.0 1.0 0.0679320679321 1_bur.0_16435661_12_2 Chr1 16435661 16485339 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_15711235_10_2 Chr3 15711235 15821944 overlap Chr3 15711361 15726863 22.35832 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_15711235_10_2 Chr3 15711235 15821944 trans Chr1 8589462 11206737 15.68496 15710637 15755003 9311550 11178940 4 0.0111111111111 0.0 0.108516061433 0.501498501499 3 0.0 7.0 0.245754245754 3_hi.0_15711235_10_2 Chr3 15711235 15821944 trans Chr1 6984029 7466217 6.854586 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_kn.0_23542260_12_2 Chr5 23542260 23680611 cis Chr5 20954362 23541260 41.62062 23541229 23659058 21144278 23541271 9 0.028298041512 0.0 0.115477091573 0.182817182817 8 0.0 7.0 0.023976023976 5_kn.0_23542260_12_2 Chr5 23542260 23680611 cis Chr5 23681611 26938137 41.62062 23593484 23681620 23681624 26351048 5 0.0282242063492 0.0 0.0942476514455 0.175824175824 4 0.0 7.0 0.147852147852 5_kn.0_23542260_12_2 Chr5 23542260 23680611 trans Chr5 20807146 20807292 12.13149 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_kn.0_23542260_12_2 Chr5 23542260 23680611 trans Chr5 18633377 18988524 10.02049 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_kn.0_9604375_15_6 Chr3 9604375 9688913 overlap Chr3 9613342 9624810 21.39538 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_kn.0_9604375_15_6 Chr3 9604375 9688913 trans Chr1 7179863 7180305 8.131083 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_kn.0_9604375_15_6 Chr3 9604375 9688913 trans Chr1 10623174 10761043 6.623563 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_bur.0_16616187_16_1 Chr2 16616187 16708427 cis Chr2 13877562 16615187 65.88904 16615142 16637367 15565959 16615212 11 0.081924232987 0.0 0.101813695791 0.045954045954 8 0.0 7.0 0.023976023976 2_bur.0_16616187_16_1 Chr2 16616187 16708427 cis Chr2 16709427 19634846 65.88904 16685268 16709434 16709441 17289606 5 0.0171411082286 0.0 0.110542195714 0.338661338661 4 0.0 8.0 0.130869130869 2_bur.0_16616187_16_1 Chr2 16616187 16708427 trans Chr2 12548359 13876707 12.13377 16650799 16650850 13102121 13102172 1 0.0769230769231 0.0 0.0384615384615 0.018981018981 1 0.0 1.0 0.031968031968 2_bur.0_16616187_16_1 Chr2 16616187 16708427 trans Chr2 10335054 11939474 10.45609 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1