ID chr.segment start.segment end.segment qtl_type chr.full_qtl start.full_qtl end.full_qtl pval.full_qtl min_from_trans_start max_from_trans_end min_to_trans_start max_to_trans_end total_number_of_trans_reads mean_percentage_trans_reads perc_conf_interval_start perc_conf_interval_end perc_p_value num_lines_with_trans lines_conf_interval_start lines_conf_interval_end lines_p_value 4_wu.0_4685572_5_5 Chr4 4685572 4856747 trans Chr5 26729078 26824976 17.20129 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_4685572_5_5 Chr4 4685572 4856747 trans Chr4 714530 714542 10.52615 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_4685572_5_5 Chr4 4685572 4856747 trans Chr4 2489314 2507945 9.81048 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_hi.0_23523539_19_4 Chr5 23523539 23529846 cis Chr5 21351598 23518539 54.88035 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_hi.0_23523539_19_4 Chr5 23523539 23529846 cis Chr5 23534846 26333380 54.88035 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_hi.0_23523539_19_4 Chr5 23523539 23529846 trans Chr5 20430360 20942324 8.596297 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_hi.0_23523539_19_4 Chr5 23523539 23529846 trans Chr5 21121480 21302940 7.082359 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_po.0_5793265_5_2 Chr4 5793265 6123635 trans Chr4 1393501 1539607 32.08031 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_po.0_5793265_5_2 Chr4 5793265 6123635 trans Chr4 714530 714897 20.9721 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_po.0_5793265_5_2 Chr4 5793265 6123635 trans Chr4 2470204 2609906 19.62111 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_ct.1_8562148_5_3 Chr2 8562148 8566433 trans Chr4 3040818 3943122 17.22038 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_ct.1_8562148_5_3 Chr2 8562148 8566433 trans Chr1 5885969 6595316 16.34722 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_ct.1_8562148_5_3 Chr2 8562148 8566433 trans Chr4 8951841 8951841 15.34053 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_1751201_5_5 Chr4 1751201 2211214 cis Chr4 1459335 1761708 110.1161 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_1751201_5_5 Chr4 1751201 2211214 trans Chr4 2759517 2786710 19.00695 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_1751201_5_5 Chr4 1751201 2211214 trans Chr4 4741612 5123488 16.16864 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_bur.0_20299561_11_6 Chr5 20299561 20419703 cis Chr5 19521014 20294561 62.06938 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_bur.0_20299561_11_6 Chr5 20299561 20419703 cis Chr5 20424703 21878711 62.06938 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_bur.0_20299561_11_6 Chr5 20299561 20419703 trans Chr5 17930295 18890885 48.36747 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_bur.0_20299561_11_6 Chr5 20299561 20419703 trans Chr5 17756950 17929181 33.36303 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_sf.2_13570939_6_5 Chr3 13570939 14049531 overlap Chr3 13618639 13984254 17.85882 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_sf.2_13570939_6_5 Chr3 13570939 14049531 trans Chr4 17688113 17718890 13.45213 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_sf.2_13570939_6_5 Chr3 13570939 14049531 trans Chr4 16440869 16440869 13.19325 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_can.0_14443175_11_7 Chr3 14443175 14528470 overlap Chr3 14494450 14511874 15.68942 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_can.0_14443175_11_7 Chr3 14443175 14528470 trans Chr4 3040818 3943122 11.19259 14462543 14505005 3322941 3886778 13 0.011063499273 0.0 0.0 0.000999000999001 10 0.0 0.0 0.000999000999001 3_can.0_14443175_11_7 Chr3 14443175 14528470 trans Chr4 10453682 10453861 10.28973 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_edi.0_26707873_14_5 Chr1 26707873 26798902 cis Chr1 26138333 26702873 189.5372 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_edi.0_26707873_14_5 Chr1 26707873 26798902 cis Chr1 26803902 29266364 189.5372 26762270 26762321 29051466 29051517 1 0.0357142857143 0 0 1 1 0 0 1 1_edi.0_26707873_14_5 Chr1 26707873 26798902 trans Chr1 25465752 26138208 21.34187 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_edi.0_26707873_14_5 Chr1 26707873 26798902 trans Chr1 24303815 24693978 19.67003 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_4213101_5_2 Chr4 4213101 4310257 trans Chr1 14332939 15522198 15.92393 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_4213101_5_2 Chr4 4213101 4310257 trans Chr1 2818382 2818382 8.224145 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_4213101_5_2 Chr4 4213101 4310257 trans Chr4 17081445 17106022 7.289163 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_zu.0_15201478_13_3 Chr4 15201478 15417469 trans Chr4 11767255 13527729 85.14774 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_zu.0_15201478_13_3 Chr4 15201478 15417469 trans Chr4 16440869 16626584 51.34661 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_zu.0_15201478_13_3 Chr4 15201478 15417469 trans Chr4 10660879 10935436 44.69709 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_col.0_7733064_5_2 Chr1 7733064 7816247 trans Chr1 7179863 7431878 50.3038 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_col.0_7733064_5_2 Chr1 7733064 7816247 cis Chr1 7466217 7804984 36.76823 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_col.0_7733064_5_2 Chr1 7733064 7816247 trans Chr1 9260450 9470740 35.02837 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_14444150_17_11 Chr3 14444150 14551708 overlap Chr3 14475204 14539643 29.16406 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_14444150_17_11 Chr3 14444150 14551708 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_14444150_17_11 Chr3 14444150 14551708 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_edi.0_8538755_9_6 Chr2 8538755 8917363 cis Chr2 7229408 8533755 50.12127 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_edi.0_8538755_9_6 Chr2 8538755 8917363 cis Chr2 8922363 10638822 50.12127 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_edi.0_8538755_9_6 Chr2 8538755 8917363 trans Chr2 6273982 7158029 33.28025 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_edi.0_8538755_9_6 Chr2 8538755 8917363 trans Chr2 6220776 6273714 10.98621 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_po.0_13580504_7_7 Chr3 13580504 13979579 overlap Chr3 13616492 13935839 28.32321 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_po.0_13580504_7_7 Chr3 13580504 13979579 trans Chr5 23806433 23872444 10.63878 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_po.0_13580504_7_7 Chr3 13580504 13979579 trans Chr4 10257990 10304965 10.4481 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_rsch.4_6348079_8_4 Chr2 6348079 6450349 cis Chr2 6427893 6869707 80.52058 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_rsch.4_6348079_8_4 Chr2 6348079 6450349 trans Chr2 5612450 5885412 27.6876 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_rsch.4_6348079_8_4 Chr2 6348079 6450349 cis Chr2 6182478 6348079 20.60574 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_tsu.0_15165211_8_8 Chr1 15165211 15600537 cis Chr1 15198272 15652044 35.82563 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_tsu.0_15165211_8_8 Chr1 15165211 15600537 trans Chr1 13686391 14303701 16.10463 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_tsu.0_15165211_8_8 Chr1 15165211 15600537 trans Chr1 16119005 16564602 15.08479 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_13916213_14_9 Chr3 13916213 14076466 overlap Chr3 13963300 13983576 19.72174 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_13916213_14_9 Chr3 13916213 14076466 overlap Chr3 13990591 14032513 7.556151 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_13916213_14_9 Chr3 13916213 14076466 trans Chr2 4997682 4997682 7.265191 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_rsch.4_13978043_7_5 Chr3 13978043 14245371 trans Chr3 13213030 13649428 22.53347 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_rsch.4_13978043_7_5 Chr3 13978043 14245371 trans Chr3 10034392 13205067 22.44169 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_rsch.4_13978043_7_5 Chr3 13978043 14245371 overlap Chr3 13983403 14244407 21.31231 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_oy.0_13803122_10_4 Chr3 13803122 13979579 trans Chr1 6013858 6701330 16.97454 13950952 13951003 6572614 6572665 1 0.1 0 0 1 1 0 0 1 3_oy.0_13803122_10_4 Chr3 13803122 13979579 trans Chr5 15053728 15055302 10.16646 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_oy.0_13803122_10_4 Chr3 13803122 13979579 trans Chr4 3727461 3729312 9.045325 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_bur.0_12622819_5_5 Chr5 12622819 12790309 trans Chr4 3035 3035 15.12118 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_bur.0_12622819_5_5 Chr5 12622819 12790309 trans Chr4 183883 183883 15.05566 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_bur.0_12622819_5_5 Chr5 12622819 12790309 trans Chr3 265178 265178 6.995674 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_can.0_4266742_10_9 Chr4 4266742 4589204 overlap Chr4 4318405 4574480 59.99404 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_can.0_4266742_10_9 Chr4 4266742 4589204 cis Chr4 4588726 4589755 9.734819 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_can.0_4266742_10_9 Chr4 4266742 4589204 trans Chr1 13641599 13947626 7.154875 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_no.0_18154917_13_6 Chr5 18154917 18210719 trans Chr5 18240283 18879610 58.65856 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_no.0_18154917_13_6 Chr5 18154917 18210719 cis Chr5 15621230 18149917 55.66243 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_no.0_18154917_13_6 Chr5 18154917 18210719 cis Chr5 18215719 18225555 55.66243 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_no.0_18154917_13_6 Chr5 18154917 18210719 trans Chr5 19526648 21310848 26.14099 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_po.0_4595747_16_1 Chr4 4595747 4768224 overlap Chr4 4614417 4712227 34.11736 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_po.0_4595747_16_1 Chr4 4595747 4768224 trans Chr4 4253333 4253758 12.313 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_po.0_4595747_16_1 Chr4 4595747 4768224 trans Chr2 38423 38423 7.961435 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_ler.0_6319301_5_1 Chr2 6319301 6394203 cis Chr2 6393521 6797266 32.08031 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_ler.0_6319301_5_1 Chr2 6319301 6394203 trans Chr2 5660828 5943875 27.86428 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_ler.0_6319301_5_1 Chr2 6319301 6394203 trans Chr2 6810972 7131194 25.88992 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_zu.0_15652772_5_3 Chr1 15652772 15746940 trans Chr4 2844565 3943122 17.6437 15698109 15743239 3328408 3369582 2 0.00167152009319 0 0 1 2 0 0 1 1_zu.0_15652772_5_3 Chr1 15652772 15746940 trans Chr1 5885969 6591705 16.47925 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_zu.0_15652772_5_3 Chr1 15652772 15746940 trans Chr4 284713 284713 16.06684 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_zu.0_11433867_23_3 Chr1 11433867 11496377 cis Chr1 9200310 11428867 83.48887 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_zu.0_11433867_23_3 Chr1 11433867 11496377 cis Chr1 11501377 13591851 83.48887 11489152 11491739 12617345 13205267 2 0.0869565217391 0 0 1 2 0 0 1 1_zu.0_11433867_23_3 Chr1 11433867 11496377 trans Chr1 15589038 16089994 14.49889 11452261 11452312 16011502 16011553 1 0.0217391304348 0 0 1 1 0 0 1 1_zu.0_11433867_23_3 Chr1 11433867 11496377 trans Chr1 16110232 16942740 14.14536 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_mt.0_15986522_11_8 Chr1 15986522 16201051 trans Chr1 12709101 14212126 17.45087 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_mt.0_15986522_11_8 Chr1 15986522 16201051 trans Chr1 15758595 15986158 16.59794 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_mt.0_15986522_11_8 Chr1 15986522 16201051 trans Chr1 15586699 15716472 15.73288 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ler.0_13958513_5_5 Chr3 13958513 14340027 trans Chr3 22111240 22112935 17.20366 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ler.0_13958513_5_5 Chr3 13958513 14340027 trans Chr4 16185198 16252425 15.1885 14199596 14199647 16200728 16200779 1 0.000985221674877 0 0 1 1 0 0 1 3_ler.0_13958513_5_5 Chr3 13958513 14340027 trans Chr3 13420704 13614427 8.039034 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_no.0_1011_5_3 Chr4 1011 125866 cis Chr4 978 -3989 21.41793 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_no.0_1011_5_3 Chr4 1011 125866 cis Chr4 130866 398490 21.41793 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_no.0_1011_5_3 Chr4 1011 125866 trans Chr4 4219788 4229786 18.03629 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_no.0_1011_5_3 Chr4 1011 125866 trans Chr5 26029956 26054123 16.06197 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_10580434_9_3 Chr4 10580434 10703033 cis Chr4 9578424 10575434 inf inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_10580434_9_3 Chr4 10580434 10703033 cis Chr4 10708033 10935436 inf inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_10580434_9_3 Chr4 10580434 10703033 trans Chr4 8951841 9429380 99.1267 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_10580434_9_3 Chr4 10580434 10703033 trans Chr4 12004116 13527729 90.21374 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_rsch.4_12971010_11_7 Chr1 12971010 13213259 trans Chr1 13871539 14193518 41.23221 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_rsch.4_12971010_11_7 Chr1 12971010 13213259 cis Chr1 11069710 12966010 30.55974 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_rsch.4_12971010_11_7 Chr1 12971010 13213259 cis Chr1 13218259 13733234 30.55974 13068123 13164917 13257075 13384526 2 0.000271375228193 0 0 1 2 0 0 1 1_rsch.4_12971010_11_7 Chr1 12971010 13213259 trans Chr1 15818071 17294082 30.55974 13032250 13209623 15882137 17229198 3 0.00027031159297 0 0 1 3 0 0 1 4_mt.0_11021976_12_1 Chr4 11021976 11208368 cis Chr4 8279506 11148048 45.03604 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_mt.0_11021976_12_1 Chr4 11021976 11208368 cis Chr4 11148268 11755745 16.58857 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_mt.0_11021976_12_1 Chr4 11021976 11208368 trans Chr4 7913215 8279013 8.546238 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_tsu.0_15657846_5_1 Chr1 15657846 15758546 trans Chr4 8951841 8956220 16.20987 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_tsu.0_15657846_5_1 Chr1 15657846 15758546 trans Chr4 8854896 8924984 15.1117 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_tsu.0_15657846_5_1 Chr1 15657846 15758546 trans Chr4 8970917 9015403 15.06742 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_4292299_8_8 Chr4 4292299 4320308 trans Chr4 133911 133911 7.474386 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_4292299_8_8 Chr4 4292299 4320308 trans Chr4 133129 133129 7.465622 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_4292299_8_8 Chr4 4292299 4320308 trans Chr4 4321030 4328022 7.317253 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_rsch.4_13018491_6_2 Chr1 13018491 13211932 trans Chr1 5885969 6655570 15.80163 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_rsch.4_13018491_6_2 Chr1 13018491 13211932 trans Chr4 118032 118297 14.39825 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_rsch.4_13018491_6_2 Chr1 13018491 13211932 trans Chr2 40002 40002 13.86689 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_po.0_17758818_5_2 Chr5 17758818 18164309 overlap Chr5 17758860 18137986 41.1785 0 0 0 0 0 0 0 inf 1 0 0 inf 1 5_po.0_17758818_5_2 Chr5 17758818 18164309 trans Chr5 16797332 17033930 25.88992 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_po.0_17758818_5_2 Chr5 17758818 18164309 trans Chr5 17457640 17634459 21.41793 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_11420286_7_6 Chr4 11420286 11769238 cis Chr4 11433553 13520994 86.17536 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_11420286_7_6 Chr4 11420286 11769238 trans Chr4 10693139 10908862 59.55002 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_11420286_7_6 Chr4 11420286 11769238 trans Chr4 10164343 10581752 59.44346 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_13615323_5_1 Chr3 13615323 13672364 trans Chr4 263392 263392 18.47648 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_13615323_5_1 Chr3 13615323 13672364 trans Chr1 6592104 6701330 16.91053 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_13615323_5_1 Chr3 13615323 13672364 trans Chr1 24976528 25068711 16.77112 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_po.0_9249192_11_2 Chr2 9249192 9280263 overlap Chr2 9249841 9277521 32.27585 0 0 0 0 0 0 0 inf 1 0 0 inf 1 2_po.0_9249192_11_2 Chr2 9249192 9280263 trans Chr2 9291888 10400820 11.33194 9262043 9262094 9765497 9765548 1 0.0909090909091 0 0 1 1 0 0 1 2_po.0_9249192_11_2 Chr2 9249192 9280263 trans Chr2 8565590 9231599 10.04826 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_13141425_21_21 Chr3 13141425 13299223 overlap Chr3 13202284 13212768 32.5058 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_no.0_13141425_21_21 Chr3 13141425 13299223 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_13141425_21_21 Chr3 13141425 13299223 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_ct.1_17929327_8_7 Chr5 17929327 17980094 trans Chr5 17095820 17645029 37.92685 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_ct.1_17929327_8_7 Chr5 17929327 17980094 cis Chr5 17929391 18225209 37.92685 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_ct.1_17929327_8_7 Chr5 17929327 17980094 trans Chr5 17756950 17928855 32.42989 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_sf.2_13571314_9_5 Chr3 13571314 13983415 overlap Chr3 13664278 13922732 16.32163 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_sf.2_13571314_9_5 Chr3 13571314 13983415 trans Chr1 15200998 15519214 10.21881 13604361 13879859 15439744 15500324 2 0.000216254836551 0 0 1 2 0 0 1 3_sf.2_13571314_9_5 Chr3 13571314 13983415 trans Chr4 11812634 12075431 9.788901 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_oy.0_14170628_8_4 Chr1 14170628 14600582 trans Chr1 24122919 24217336 11.74715 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_oy.0_14170628_8_4 Chr1 14170628 14600582 trans Chr1 114979 114979 9.989099 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_oy.0_14170628_8_4 Chr1 14170628 14600582 cis Chr1 14596818 15163140 9.637736 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_zu.0_5578600_7_4 Chr1 5578600 5663416 trans Chr1 7231868 7431878 49.33196 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_zu.0_5578600_7_4 Chr1 5578600 5663416 trans Chr1 5294788 5470342 29.34892 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_zu.0_5578600_7_4 Chr1 5578600 5663416 overlap Chr1 5586347 5641266 21.82021 0 0 0 0 0 0 0 inf 1 0 0 inf 1 5_wu.0_12716155_21_1 Chr5 12716155 12792817 cis Chr5 8186738 12711155 50.93298 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_wu.0_12716155_21_1 Chr5 12716155 12792817 cis Chr5 12797817 17756950 50.93298 12729814 12789130 12926448 14935242 5 0.00047288118132 0.0 0.0 0.000999000999001 4 0.0 0.0 0.000999000999001 5_wu.0_12716155_21_1 Chr5 12716155 12792817 trans Chr5 18210729 18778114 8.525094 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_wu.0_12716155_21_1 Chr5 12716155 12792817 trans Chr5 17758406 18158589 7.799069 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_kn.0_18962127_12_9 Chr1 18962127 18970324 overlap Chr1 18962127 18967659 22.88752 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_kn.0_18962127_12_9 Chr1 18962127 18970324 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_kn.0_18962127_12_9 Chr1 18962127 18970324 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wil.2_4317214_12_8 Chr4 4317214 4571168 overlap Chr4 4353163 4504288 16.13113 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_wil.2_4317214_12_8 Chr4 4317214 4571168 overlap Chr4 4504346 4504354 8.707551 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_wil.2_4317214_12_8 Chr4 4317214 4571168 overlap Chr4 4504363 4504363 8.031171 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_sf.2_19024164_10_1 Chr1 19024164 19081523 cis Chr1 17214782 19019164 31.40417 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_sf.2_19024164_10_1 Chr1 19024164 19081523 cis Chr1 19086523 24175253 31.40417 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_sf.2_19024164_10_1 Chr1 19024164 19081523 trans Chr5 22288679 22360369 11.36303 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_sf.2_19024164_10_1 Chr1 19024164 19081523 trans Chr4 11765871 11766028 9.333848 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_po.0_5621237_15_4 Chr2 5621237 5989439 cis Chr2 72719 5943875 121.0921 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_po.0_5621237_15_4 Chr2 5621237 5989439 trans Chr2 6180702 8087426 56.04784 5622616 5905289 6190271 7778940 8 0.000371854536838 0.0 0.0 0.000999000999001 6 0.0 0.0 0.000999000999001 2_po.0_5621237_15_4 Chr2 5621237 5989439 trans Chr2 5989647 6177312 7.810919 5731530 5986900 5996362 6113320 2 0.000151515151515 0 0 1 1 0 0 1 4_wu.0_4712292_49_26 Chr4 4712292 4782538 overlap Chr4 4760214 4768356 39.55334 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_4712292_49_26 Chr4 4712292 4782538 trans Chr2 1978499 5104464 8.228328 4712300 4774077 2134025 5002190 42 0.00185014110291 0.0 0.0 0.000999000999001 29 0.0 0.0 0.000999000999001 4_wu.0_4712292_49_26 Chr4 4712292 4782538 trans Chr2 5238111 5430389 7.520755 4724244 4725671 5366460 5377614 5 0.0231292517007 0.0 0.0 0.000999000999001 5 0.0 0.0 0.000999000999001 4_rsch.4_1454_5_3 Chr4 1454 491015 overlap Chr4 3035 3035 21.45171 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_1454_5_3 Chr4 1454 491015 trans Chr1 114764 114764 17.13205 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_1454_5_3 Chr4 1454 491015 trans Chr4 2058962 2187015 16.90871 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_wil.2_14284689_5_4 Chr3 14284689 14527716 overlap Chr3 14340236 14469010 15.42373 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_wil.2_14284689_5_4 Chr3 14284689 14527716 trans Chr1 7181778 7208709 7.797844 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_wil.2_14284689_5_4 Chr3 14284689 14527716 overlap Chr3 14328651 14340155 7.334909 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_rsch.4_14475909_10_2 Chr3 14475909 14541569 overlap Chr3 14476068 14534078 39.53362 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_rsch.4_14475909_10_2 Chr3 14475909 14541569 trans Chr2 5944392 5985516 12.26734 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_rsch.4_14475909_10_2 Chr3 14475909 14541569 trans Chr4 10398807 10423768 7.475921 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_4695206_6_3 Chr4 4695206 4772153 trans Chr3 21589968 21691733 6.848717 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_4695206_6_3 Chr4 4695206 4772153 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_4695206_6_3 Chr4 4695206 4772153 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_kn.0_4312101_8_8 Chr4 4312101 4625885 overlap Chr4 4358157 4590670 30.15447 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_kn.0_4312101_8_8 Chr4 4312101 4625885 trans Chr3 22112180 22112935 10.95782 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_kn.0_4312101_8_8 Chr4 4312101 4625885 trans Chr4 16185198 16252425 9.534381 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_hi.0_18209079_11_4 Chr4 18209079 18412791 cis Chr4 18182077 18204079 38.48946 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_hi.0_18209079_11_4 Chr4 18209079 18412791 cis Chr4 18417791 18519040 38.48946 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_hi.0_18209079_11_4 Chr4 18209079 18412791 trans Chr4 17141068 18009184 25.09139 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_hi.0_18209079_11_4 Chr4 18209079 18412791 trans Chr4 12147601 16645889 14.56825 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_oy.0_11026223_7_2 Chr1 11026223 11434195 cis Chr1 10652013 11030163 51.40862 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_oy.0_11026223_7_2 Chr1 11026223 11434195 trans Chr1 11496394 14269101 44.21265 11090402 11303395 11964187 12946342 3 0.000425874822372 0 0 1 2 0 0 1 1_oy.0_11026223_7_2 Chr1 11026223 11434195 trans Chr1 15581912 16089994 38.89551 11081949 11082000 16070213 16070264 1 0.142857142857 0 0 1 1 0 0 1 1_tsu.0_10246808_6_3 Chr1 10246808 10654575 trans Chr1 9115799 9536247 105.0791 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_tsu.0_10246808_6_3 Chr1 10246808 10654575 cis Chr1 10298140 11025424 49.65884 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_tsu.0_10246808_6_3 Chr1 10246808 10654575 trans Chr1 12481590 12924126 19.82141 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_tsu.0_16696935_6_1 Chr4 16696935 16734511 trans Chr4 16248891 16695895 178.0533 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_tsu.0_16696935_6_1 Chr4 16696935 16734511 trans Chr4 10453655 10582473 60.13146 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_tsu.0_16696935_6_1 Chr4 16696935 16734511 trans Chr4 10693279 10898246 38.18485 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_4550735_12_9 Chr4 4550735 4627281 overlap Chr4 4587607 4606058 10.04313 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_4550735_12_9 Chr4 4550735 4627281 trans Chr4 528694 714731 9.704518 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_4550735_12_9 Chr4 4550735 4627281 trans Chr4 1458275 1460183 9.498487 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ler.0_12934496_5_3 Chr3 12934496 13018800 trans Chr4 1251508 1257877 23.22189 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ler.0_12934496_5_3 Chr3 12934496 13018800 trans Chr3 3129249 3153959 17.88677 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ler.0_12934496_5_3 Chr3 12934496 13018800 trans Chr3 9829739 9852764 12.43783 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ler.0_2557840_5_4 Chr4 2557840 2788186 trans Chr3 115855 115855 19.39744 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ler.0_2557840_5_4 Chr4 2557840 2788186 trans Chr4 16185198 16252425 16.49367 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ler.0_2557840_5_4 Chr4 2557840 2788186 trans Chr3 22112180 22112935 15.78555 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ler.0_13956520_9_9 Chr3 13956520 14425631 overlap Chr3 13983269 14329554 20.02717 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_ler.0_13956520_9_9 Chr3 13956520 14425631 trans Chr3 14622054 15028316 20.02717 14247663 14375851 14697011 14919182 5 0.000823580679455 0.0 0.0 0.000999000999001 4 0.0 0.0 0.000999000999001 3_ler.0_13956520_9_9 Chr3 13956520 14425631 trans Chr3 13106013 13584410 19.04815 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_14238624_13_10 Chr3 14238624 14284644 trans Chr3 12785193 13955473 49.19243 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_14238624_13_10 Chr3 14238624 14284644 cis Chr3 14255403 17035376 39.46996 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_14238624_13_10 Chr3 14238624 14284644 cis Chr3 13980619 14245383 36.03283 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ler.0_14486922_10_5 Chr3 14486922 14552165 overlap Chr3 14498048 14534452 24.83343 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_ler.0_14486922_10_5 Chr3 14486922 14552165 trans Chr1 8352744 9115133 12.61001 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ler.0_14486922_10_5 Chr3 14486922 14552165 trans Chr1 15536209 16460678 11.73635 14520005 14535153 15730488 15730715 4 0.0038315696649 0 0 1 3 0 0 1 5_edi.0_10016472_9_5 Chr5 10016472 10089502 overlap Chr5 10046102 10064726 40.51198 0 0 0 0 0 0 0 inf 1 0 0 inf 1 5_edi.0_10016472_9_5 Chr5 10016472 10089502 trans Chr4 17688113 17718890 8.019086 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_edi.0_10016472_9_5 Chr5 10016472 10089502 trans Chr4 16440869 16440869 7.307834 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_can.0_3724275_14_8 Chr4 3724275 3729322 cis Chr4 3722888 3719275 71.51981 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_can.0_3724275_14_8 Chr4 3724275 3729322 cis Chr4 3734322 3729614 71.51981 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_can.0_3724275_14_8 Chr4 3724275 3729322 trans Chr2 689645 7327479 33.81608 3725885 3729080 1108750 6461537 8 0.00451651564896 0.0 0.0 0.000999000999001 5 0.0 0.0 0.000999000999001 4_can.0_3724275_14_8 Chr4 3724275 3729322 trans Chr2 1173 182250 8.478676 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_wil.2_14444678_20_6 Chr3 14444678 14539826 overlap Chr3 14484545 14532971 23.26309 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_wil.2_14444678_20_6 Chr3 14444678 14539826 trans Chr4 133852 4314689 21.24213 14446939 14510269 2220285 4216467 27 0.00853141534697 0.0 0.0 0.000999000999001 14 0.0 0.0 0.000999000999001 3_wil.2_14444678_20_6 Chr3 14444678 14539826 trans Chr4 4767258 6253391 19.60739 14462308 14523483 4789396 5557912 2 0.000591347125817 0 0 1 2 0 0 1 2_tsu.0_2546247_7_7 Chr2 2546247 2724586 trans Chr2 3766925 4497334 33.33056 2706853 2717119 4040415 4165819 3 0.00934319673815 0 0 1 3 0 0 1 2_tsu.0_2546247_7_7 Chr2 2546247 2724586 trans Chr2 6432547 6869707 26.11472 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_tsu.0_2546247_7_7 Chr2 2546247 2724586 trans Chr2 5612450 5885412 20.49031 2580997 2581103 5875975 5876026 2 0.0833333333333 0 0 1 2 0 0 1 4_wu.0_12697584_6_5 Chr4 12697584 12852936 cis Chr4 12075354 12692584 77.13139 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_12697584_6_5 Chr4 12697584 12852936 cis Chr4 12857936 13520994 77.13139 12814727 12814778 12997603 12997654 1 0.166666666667 0 0 1 1 0 0 1 4_wu.0_12697584_6_5 Chr4 12697584 12852936 trans Chr4 10453861 10582473 64.79266 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_12697584_6_5 Chr4 12697584 12852936 trans Chr4 10692738 10905069 47.77962 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_can.0_14285354_18_16 Chr3 14285354 14538449 overlap Chr3 14326765 14522311 79.77266 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_can.0_14285354_18_16 Chr3 14285354 14538449 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_can.0_14285354_18_16 Chr3 14285354 14538449 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_13551447_5_5 Chr3 13551447 14044906 trans Chr4 17812305 18103258 19.52556 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_13551447_5_5 Chr3 13551447 14044906 trans Chr4 198469 201432 16.22096 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_13551447_5_5 Chr3 13551447 14044906 trans Chr4 1379085 1380038 7.775265 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wil.2_1025_6_1 Chr4 1025 215285 trans Chr4 553383 553383 19.53722 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wil.2_1025_6_1 Chr4 1025 215285 trans Chr4 583740 583740 19.03675 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wil.2_1025_6_1 Chr4 1025 215285 overlap Chr4 157013 157562 16.99106 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_zu.0_23019788_5_2 Chr3 23019788 23459126 trans Chr1 9421994 9888158 42.32963 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_zu.0_23019788_5_2 Chr3 23019788 23459126 overlap Chr3 23020583 23371191 36.15279 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_zu.0_23019788_5_2 Chr3 23019788 23459126 trans Chr1 6592104 6701330 18.90561 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_1874210_6_5 Chr4 1874210 2203229 cis Chr4 1751201 1886924 35.39893 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_1874210_6_5 Chr4 1874210 2203229 trans Chr4 2487874 2618017 24.05314 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_1874210_6_5 Chr4 1874210 2203229 trans Chr4 855958 1235006 17.85882 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_can.0_14267895_6_5 Chr3 14267895 14340872 overlap Chr3 14274034 14284644 18.2645 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_can.0_14267895_6_5 Chr3 14267895 14340872 trans Chr4 128705 128816 13.5155 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_can.0_14267895_6_5 Chr3 14267895 14340872 trans Chr4 129800 129800 13.5155 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_kn.0_4439905_5_4 Chr4 4439905 4627198 trans Chr2 37283 37283 15.35359 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_kn.0_4439905_5_4 Chr4 4439905 4627198 trans Chr2 38391 38391 15.35359 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_kn.0_4439905_5_4 Chr4 4439905 4627198 trans Chr2 38517 38517 15.35359 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ct.1_1011_17_4 Chr4 1011 197666 cis Chr4 978 -3989 61.71947 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ct.1_1011_17_4 Chr4 1011 197666 cis Chr4 202666 4234878 61.71947 56023 185379 558254 3649761 11 0.000878532557095 0.0 0.0 0.000999000999001 7 0.0 0.0 0.000999000999001 4_ct.1_1011_17_4 Chr4 1011 197666 trans Chr4 4635016 4763257 23.06147 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ct.1_1011_17_4 Chr4 1011 197666 trans Chr4 4768358 7193037 19.81368 77079 184366 6074615 7139583 3 0.00031210038631 0 0 1 3 0 0 1 3_edi.0_23019788_8_2 Chr3 23019788 23459126 overlap Chr3 23019788 23371191 61.83931 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_edi.0_23019788_8_2 Chr3 23019788 23459126 trans Chr3 18204240 23019105 55.22245 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_edi.0_23019788_8_2 Chr3 23019788 23459126 trans Chr3 14942879 16113921 10.29931 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_13717699_10_5 Chr1 13717699 13825404 cis Chr1 13491348 13745060 40.8118 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_13717699_10_5 Chr1 13717699 13825404 trans Chr1 13827683 14043218 10.36184 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_13717699_10_5 Chr1 13717699 13825404 trans Chr1 13168652 13372626 10.07706 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_tsu.0_15691316_5_5 Chr1 15691316 15819899 trans Chr4 8951841 8951841 15.80511 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_tsu.0_15691316_5_5 Chr1 15691316 15819899 trans Chr1 24175639 24175645 8.081715 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_tsu.0_15691316_5_5 Chr1 15691316 15819899 trans Chr1 15681487 15690537 6.921047 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_no.0_1011_10_6 Chr4 1011 125866 cis Chr4 978 125736 31.67312 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_no.0_1011_10_6 Chr4 1011 125866 trans Chr4 126589 1612704 29.90584 79018 124987 566387 660476 3 0.000655272184354 0 0 1 2 0 0 1 4_no.0_1011_10_6 Chr4 1011 125866 trans Chr4 2330469 2782540 14.53418 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_no.0_15142872_6_6 Chr1 15142872 15651648 trans Chr4 2507927 2551516 18.77929 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_no.0_15142872_6_6 Chr1 15142872 15651648 trans Chr4 2418575 2489314 18.76252 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_no.0_15142872_6_6 Chr1 15142872 15651648 trans Chr4 182432 182432 12.23034 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_ler.0_16679269_5_3 Chr1 16679269 16702037 trans Chr1 9551008 9939335 18.49931 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_ler.0_16679269_5_3 Chr1 16679269 16702037 trans Chr1 8352744 9199758 18.06977 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_ler.0_16679269_5_3 Chr1 16679269 16702037 trans Chr1 6592104 6701330 17.61454 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_4423212_5_1 Chr4 4423212 4538778 trans Chr1 139124 224534 20.1603 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_4423212_5_1 Chr4 4423212 4538778 trans Chr3 21854649 21873661 10.97029 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_4423212_5_1 Chr4 4423212 4538778 trans Chr3 338703 338703 9.613516 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_mt.0_16927521_9_4 Chr1 16927521 17145695 cis Chr1 17143962 18391910 67.84825 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_mt.0_16927521_9_4 Chr1 16927521 17145695 trans Chr1 16114740 16918108 55.01782 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_mt.0_16927521_9_4 Chr1 16927521 17145695 trans Chr1 15584330 16077766 28.31082 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_can.0_16038527_6_5 Chr4 16038527 16223614 trans Chr4 16445920 16695895 31.56197 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_can.0_16038527_6_5 Chr4 16038527 16223614 trans Chr4 10581829 10582473 14.46843 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_can.0_16038527_6_5 Chr4 16038527 16223614 overlap Chr4 16116019 16170775 13.41513 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_14326026_13_9 Chr3 14326026 14539312 overlap Chr3 14328111 14510270 67.61949 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_14326026_13_9 Chr3 14326026 14539312 trans Chr2 6728385 7504861 34.81341 14329496 14329547 6898471 6898522 1 0.0769230769231 0 0 1 1 0 0 1 3_hi.0_14326026_13_9 Chr3 14326026 14539312 trans Chr2 6276144 6393521 20.3279 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_can.0_6009619_11_8 Chr1 6009619 6074949 trans Chr1 11830247 18962607 54.60733 6013804 6014063 16465129 16465573 4 0.121464646465 0 0 1 4 0 0 1 1_can.0_6009619_11_8 Chr1 6009619 6074949 cis Chr1 6000509 6015130 43.82358 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_can.0_6009619_11_8 Chr1 6009619 6074949 trans Chr1 19049266 20514579 15.31167 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_16098681_7_6 Chr4 16098681 16155489 trans Chr4 11812634 12696559 25.6001 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_16098681_7_6 Chr4 16098681 16155489 trans Chr4 12835632 13520994 21.15149 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_16098681_7_6 Chr4 16098681 16155489 trans Chr1 14539642 15436322 15.83988 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_sf.2_14328742_27_25 Chr3 14328742 14544490 overlap Chr3 14340007 14528339 61.56946 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_sf.2_14328742_27_25 Chr3 14328742 14544490 overlap Chr3 14337273 14337879 6.287299 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_sf.2_14328742_27_25 Chr3 14328742 14544490 overlap Chr3 14530411 14530738 6.220648 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_14878680_9_8 Chr4 14878680 15200849 trans Chr4 12820770 13527729 72.94956 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_14878680_9_8 Chr4 14878680 15200849 trans Chr4 12126896 12709137 56.4061 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_14878680_9_8 Chr4 14878680 15200849 trans Chr4 16248036 16612821 51.43046 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_ct.1_6044930_8_8 Chr2 6044930 6188321 trans Chr2 6450742 6869707 50.59733 6094805 6094861 6648913 6648964 2 0.15625 0 0 1 2 0 0 1 2_ct.1_6044930_8_8 Chr2 6044930 6188321 trans Chr2 7043882 7490803 16.56955 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_ct.1_6044930_8_8 Chr2 6044930 6188321 trans Chr2 5653875 5738491 15.90217 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_zu.0_14050321_9_3 Chr5 14050321 14128828 trans Chr5 20808019 20808987 14.01593 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_zu.0_14050321_9_3 Chr5 14050321 14128828 trans Chr5 13791106 14030932 12.24325 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_zu.0_14050321_9_3 Chr5 14050321 14128828 trans Chr5 14035802 14049701 10.90373 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_22107508_9_9 Chr3 22107508 22178870 cis Chr3 20223904 22142472 73.30001 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_22107508_9_9 Chr3 22107508 22178870 trans Chr3 18085762 19850216 57.5095 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_22107508_9_9 Chr3 22107508 22178870 trans Chr3 22650943 23371191 33.05181 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_can.0_12847183_7_5 Chr1 12847183 13001135 trans Chr1 16113390 16937155 22.22358 12900230 12900281 16379241 16379292 1 0.142857142857 0 0 1 1 0 0 1 1_can.0_12847183_7_5 Chr1 12847183 13001135 trans Chr1 17144956 17529671 19.9164 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_can.0_12847183_7_5 Chr1 12847183 13001135 cis Chr1 12973049 14270760 19.26523 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_18365715_7_5 Chr4 18365715 18584862 cis Chr4 18201386 18365715 11.77694 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_18365715_7_5 Chr4 18365715 18584862 trans Chr4 263392 263392 11.03216 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_18365715_7_5 Chr4 18365715 18584862 trans Chr4 17470463 17814042 9.801624 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_sf.2_14494529_5_3 Chr1 14494529 14602144 trans Chr5 15019018 15055305 23.16354 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_sf.2_14494529_5_3 Chr1 14494529 14602144 trans Chr4 182432 182432 16.90348 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_sf.2_14494529_5_3 Chr1 14494529 14602144 trans Chr4 194935 194935 16.89003 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ws.0_4207737_5_5 Chr4 4207737 4406616 overlap Chr4 4317407 4369967 25.88992 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_ws.0_4207737_5_5 Chr4 4207737 4406616 trans Chr4 174306 174306 19.0408 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ws.0_4207737_5_5 Chr4 4207737 4406616 trans Chr4 118032 118297 16.48778 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_tsu.0_15509587_5_5 Chr1 15509587 15603505 trans Chr4 4314690 4459515 26.24347 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_tsu.0_15509587_5_5 Chr1 15509587 15603505 trans Chr4 257597 257597 16.74305 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_tsu.0_15509587_5_5 Chr1 15509587 15603505 trans Chr4 124761 124761 9.221231 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ws.0_3862361_5_4 Chr4 3862361 4318873 cis Chr4 1026598 3914587 29.2817 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ws.0_3862361_5_4 Chr4 3862361 4318873 trans Chr4 4760259 6932510 28.7152 3962176 3962227 4964008 4964059 1 0.1 0 0 1 1 0 0 1 4_ws.0_3862361_5_4 Chr4 3862361 4318873 trans Chr4 708405 1005493 16.30464 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_4573507_9_6 Chr4 4573507 4763976 trans Chr4 3729614 4209299 18.11433 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_4573507_9_6 Chr4 4573507 4763976 overlap Chr4 4614414 4692131 13.04406 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_4573507_9_6 Chr4 4573507 4763976 trans Chr5 11411815 11428508 9.360563 4618751 4618802 11412765 11412816 1 0.111111111111 0 0 1 1 0 0 1 3_no.0_14328998_8_5 Chr3 14328998 14475873 overlap Chr3 14394553 14468880 15.65231 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_no.0_14328998_8_5 Chr3 14328998 14475873 trans Chr1 24976528 25068711 9.746575 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_14328998_8_5 Chr3 14328998 14475873 trans Chr4 263392 263392 8.469034 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_513136_5_3 Chr3 513136 551222 trans Chr3 506817 510122 24.44938 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_513136_5_3 Chr3 513136 551222 trans Chr4 135406 135406 15.23007 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_513136_5_3 Chr3 513136 551222 trans Chr3 555652 915555 13.5493 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_po.0_1391271_5_1 Chr4 1391271 1761788 overlap Chr4 1459335 1761708 110.1161 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_po.0_1391271_5_1 Chr4 1391271 1761788 trans Chr4 2759517 2786710 19.00695 1612379 1612530 2782489 2782575 2 0.133333333333 0 0 1 1 0 0 1 4_po.0_1391271_5_1 Chr4 1391271 1761788 trans Chr4 4741612 5123488 16.16864 1749836 1749887 4997932 4997983 1 0.2 0 0 1 1 0 0 1 1_no.0_15649461_7_3 Chr1 15649461 15866039 trans Chr4 4314690 4367689 17.95911 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_no.0_15649461_7_3 Chr1 15649461 15866039 overlap Chr1 15730704 15815041 15.33252 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_no.0_15649461_7_3 Chr1 15649461 15866039 trans Chr4 121237 121344 11.42911 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_hi.0_14886533_6_1 Chr5 14886533 15011848 trans Chr5 15344008 18700751 11.04557 14886651 14949148 16747364 18657727 4 0.0015332406037 0 0 1 4 0 0 1 5_hi.0_14886533_6_1 Chr5 14886533 15011848 overlap Chr5 14909578 15005129 10.95233 0 0 0 0 0 0 0 inf 1 0 0 inf 1 5_hi.0_14886533_6_1 Chr5 14886533 15011848 trans Chr5 14083303 14542418 10.5261 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_14246685_18_2 Chr3 14246685 14286771 cis Chr3 13206026 14241685 35.73432 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_14246685_18_2 Chr3 14246685 14286771 cis Chr3 14291771 14402837 35.73432 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_14246685_18_2 Chr3 14246685 14286771 trans Chr3 14535059 17345084 22.41878 14248248 14266823 14556908 15492119 3 0.00169500503205 0 0 1 3 0 0 1 3_hi.0_14246685_18_2 Chr3 14246685 14286771 trans Chr3 10252001 13198017 18.90715 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ct.1_12676141_7_5 Chr3 12676141 12845744 trans Chr1 22028410 22083094 11.59808 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ct.1_12676141_7_5 Chr3 12676141 12845744 trans Chr3 14375869 14471270 10.64297 12710178 12710229 14395027 14395078 1 0.142857142857 0 0 1 1 0 0 1 3_ct.1_12676141_7_5 Chr3 12676141 12845744 trans Chr4 284713 284713 9.981378 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_can.0_18951050_10_3 Chr1 18951050 19049229 cis Chr1 17220088 18962645 25.49032 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_can.0_18951050_10_3 Chr1 18951050 19049229 cis Chr1 18971094 19049433 23.4716 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_can.0_18951050_10_3 Chr1 18951050 19049229 trans Chr1 19049696 24175327 21.96884 18962297 19029431 22316828 23755938 3 0.000566221218395 0 0 1 3 0 0 1 4_sf.2_4189543_21_20 Chr4 4189543 4332891 cis Chr4 1305395 4315023 50.3846 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_sf.2_4189543_21_20 Chr4 4189543 4332891 trans Chr4 4448822 6100477 19.97667 4206841 4314358 4544557 5421810 12 0.00133259322059 0.0 0.0 0.000999000999001 9 0.0 0.0 0.000999000999001 4_sf.2_4189543_21_20 Chr4 4189543 4332891 trans Chr4 182436 1257869 14.9914 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ler.0_12068868_5_2 Chr4 12068868 12134282 trans Chr4 9160040 9297543 42.42755 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ler.0_12068868_5_2 Chr4 12068868 12134282 cis Chr4 12127946 12709137 41.1785 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ler.0_12068868_5_2 Chr4 12068868 12134282 trans Chr4 12820770 13520994 32.46673 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_1608464_7_4 Chr4 1608464 1909303 trans Chr2 73297 401828 18.72906 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_1608464_7_4 Chr4 1608464 1909303 trans Chr2 646083 882361 17.44318 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_1608464_7_4 Chr4 1608464 1909303 trans Chr4 739934 740397 14.61222 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_14303544_24_15 Chr3 14303544 14475356 overlap Chr3 14340805 14438950 26.58509 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_14303544_24_15 Chr3 14303544 14475356 trans Chr3 14255728 14259888 6.813877 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_14303544_24_15 Chr3 14303544 14475356 trans Chr3 14284296 14284644 6.286853 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ct.1_8951527_9_1 Chr3 8951527 9099953 trans Chr4 4253906 4260063 22.70817 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ct.1_8951527_9_1 Chr3 8951527 9099953 trans Chr4 4533872 4590897 17.54933 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ct.1_8951527_9_1 Chr3 8951527 9099953 trans Chr4 5571006 8488146 16.76949 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_14476476_9_5 Chr3 14476476 14539978 overlap Chr3 14484562 14535059 24.82552 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_14476476_9_5 Chr3 14476476 14539978 trans Chr2 72730 72730 10.9544 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_14476476_9_5 Chr3 14476476 14539978 trans Chr2 482162 482882 8.61188 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_oy.0_12531079_5_1 Chr2 12531079 12795828 trans Chr2 11599724 12523862 23.48617 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_oy.0_12531079_5_1 Chr2 12531079 12795828 trans Chr1 19435502 19619304 16.93887 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_oy.0_12531079_5_1 Chr2 12531079 12795828 trans Chr2 16703023 17722205 16.61932 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_kn.0_9879_5_3 Chr2 9879 435141 trans Chr4 139326 139326 16.96864 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_kn.0_9879_5_3 Chr2 9879 435141 overlap Chr2 387753 387753 9.598673 0 0 0 0 0 0 0 inf 1 0 0 inf 1 2_kn.0_9879_5_3 Chr2 9879 435141 overlap Chr2 58233 382229 9.039879 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_no.0_14438409_6_3 Chr3 14438409 14535068 trans Chr5 14083595 14088002 11.84708 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_14438409_6_3 Chr3 14438409 14535068 trans Chr4 123594 123594 11.33572 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_14438409_6_3 Chr3 14438409 14535068 trans Chr2 188207 188207 6.573345 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_po.0_1388900_9_2 Chr2 1388900 1392883 trans Chr5 13 1159118 12.38251 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_po.0_1388900_9_2 Chr2 1388900 1392883 trans Chr5 2300379 2409237 8.569983 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_po.0_1388900_9_2 Chr2 1388900 1392883 overlap Chr2 1389477 1392128 8.12099 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_ct.1_1241304_11_3 Chr4 1241304 1390878 trans Chr4 1391168 1653170 41.71588 1311197 1318555 1473660 1478869 6 0.0159498341317 0.0 0.0 0.000999000999001 3 0.0 0.0 0.000999000999001 4_ct.1_1241304_11_3 Chr4 1241304 1390878 trans Chr4 2411208 2614904 25.30911 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ct.1_1241304_11_3 Chr4 1241304 1390878 trans Chr4 978 1235006 25.11516 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_mt.0_15092715_8_8 Chr5 15092715 15372172 cis Chr5 15328873 17177600 18.53717 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_mt.0_15092715_8_8 Chr5 15092715 15372172 cis Chr5 14910119 15092715 12.55258 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_mt.0_15092715_8_8 Chr5 15092715 15372172 trans Chr1 114979 114979 9.842389 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_ler.0_9879_5_1 Chr2 9879 412755 trans Chr4 263392 263392 15.58156 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_ler.0_9879_5_1 Chr2 9879 412755 overlap Chr2 69808 358343 8.519481 0 0 0 0 0 0 0 inf 1 0 0 inf 1 2_ler.0_9879_5_1 Chr2 9879 412755 overlap Chr2 41712 41712 7.211702 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_mt.0_24173134_121_29 Chr1 24173134 24182065 cis Chr1 19836813 24168134 125.4571 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_mt.0_24173134_121_29 Chr1 24173134 24182065 cis Chr1 24187065 27408532 125.4571 24177115 24177166 25330725 25330776 1 0.00826446280992 0 0 1 1 0 0 1 1_mt.0_24173134_121_29 Chr1 24173134 24182065 trans Chr1 19608699 19809292 6.926407 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_mt.0_24173134_121_29 Chr1 24173134 24182065 trans Chr1 19586421 19590257 6.72534 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_oy.0_13612284_17_14 Chr3 13612284 13983577 overlap Chr3 13664439 13957094 21.02586 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_oy.0_13612284_17_14 Chr3 13612284 13983577 overlap Chr3 13958172 13959530 6.085838 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_oy.0_13612284_17_14 Chr3 13612284 13983577 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_14374281_12_7 Chr3 14374281 14532707 trans Chr1 9481241 9592909 12.69408 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_14374281_12_7 Chr3 14374281 14532707 trans Chr1 6592104 6655570 11.54077 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_14374281_12_7 Chr3 14374281 14532707 trans Chr5 270391 271084 10.027 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_mt.0_17035475_14_5 Chr5 17035475 17096546 cis Chr5 16723527 17030475 71.51981 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_mt.0_17035475_14_5 Chr5 17035475 17096546 cis Chr5 17101546 17645029 71.51981 17088670 17088791 17326966 17327058 3 0.125 0 0 1 3 0 0 1 5_mt.0_17035475_14_5 Chr5 17035475 17096546 trans Chr5 17755778 18167016 34.66789 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_mt.0_17035475_14_5 Chr5 17035475 17096546 trans Chr5 15643009 16335502 22.11835 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_zu.0_14285354_7_4 Chr3 14285354 14374491 trans Chr3 10914297 13663960 33.33056 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_zu.0_14285354_7_4 Chr3 14285354 14374491 trans Chr3 14540908 17590172 33.33056 14346842 14374273 14919092 15132285 3 0.0263157894737 0 0 1 2 0 0 1 3_zu.0_14285354_7_4 Chr3 14285354 14374491 overlap Chr3 14289899 14329554 24.88091 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_14274965_11_10 Chr3 14274965 14586250 overlap Chr3 14340229 14532301 59.28133 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_14274965_11_10 Chr3 14274965 14586250 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_14274965_11_10 Chr3 14274965 14586250 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_4715884_11_4 Chr4 4715884 4763305 trans Chr5 14049842 14067675 15.06954 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_4715884_11_4 Chr4 4715884 4763305 trans Chr4 182432 182432 7.561657 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_4715884_11_4 Chr4 4715884 4763305 trans Chr4 194935 194935 7.457195 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_ler.0_6378068_11_10 Chr2 6378068 6799160 cis Chr2 71470 6785908 71.13339 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_ler.0_6378068_11_10 Chr2 6378068 6799160 cis Chr2 6788096 8527798 30.95298 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_ler.0_6378068_11_10 Chr2 6378068 6799160 trans Chr2 9298375 10618210 23.72782 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_hi.0_7353435_5_3 Chr4 7353435 7454311 trans Chr4 9160040 9297543 41.87652 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_hi.0_7353435_5_3 Chr4 7353435 7454311 trans Chr4 10579815 10581983 24.03593 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_hi.0_7353435_5_3 Chr4 7353435 7454311 trans Chr5 25316240 26245996 16.57602 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_15985622_11_11 Chr1 15985622 16113157 cis Chr1 15581912 16080255 88.24562 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_15985622_11_11 Chr1 15985622 16113157 trans Chr1 16113390 16942740 88.24562 16061272 16080441 16114779 16607577 2 0.00264611136677 0 0 1 2 0 0 1 1_bur.0_15985622_11_11 Chr1 15985622 16113157 trans Chr1 12481225 14303701 79.63742 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_zu.0_2584051_23_22 Chr4 2584051 2785838 cis Chr4 978 2579051 190.0369 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_zu.0_2584051_23_22 Chr4 2584051 2785838 cis Chr4 2790838 4378310 190.0369 2584064 2728107 3493003 4310390 2 7.79834106129e-05 0 0 1 2 0 0 1 4_zu.0_2584051_23_22 Chr4 2584051 2785838 trans Chr4 4550735 6291338 73.73288 2598412 2768947 5297450 6215293 6 0.000261781434826 0.0 0.0 0.000999000999001 5 0.0 0.0 0.000999000999001 4_zu.0_2584051_23_22 Chr4 2584051 2785838 trans Chr2 52366 55486 11.06083 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_14247351_11_5 Chr3 14247351 14285284 overlap Chr3 14273109 14285144 27.53541 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_14247351_11_5 Chr3 14247351 14285284 trans Chr3 21056198 23371191 24.99882 14248252 14273232 22239845 23089224 6 0.00219987031813 0.0 0.0 0.000999000999001 5 0.0 0.0 0.000999000999001 3_tsu.0_14247351_11_5 Chr3 14247351 14285284 trans Chr3 20068242 20902076 10.01314 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_9479583_11_1 Chr4 9479583 9581314 overlap Chr4 9576692 9581005 23.49362 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_9479583_11_1 Chr4 9479583 9581314 trans Chr4 10359466 10423768 15.54264 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_9479583_11_1 Chr4 9479583 9581314 cis Chr4 8928831 9480346 15.38702 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_po.0_1459259_5_2 Chr4 1459259 1539793 overlap Chr4 1539607 1539607 32.54031 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_po.0_1459259_5_2 Chr4 1459259 1539793 trans Chr4 2489550 2596469 19.62111 1531413 1531464 2580580 2580631 1 0.2 0 0 1 1 0 0 1 4_po.0_1459259_5_2 Chr4 1459259 1539793 cis Chr4 1457071 1536459 18.04697 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wil.2_4269837_7_7 Chr4 4269837 4574808 trans Chr4 132681 132681 12.38493 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wil.2_4269837_7_7 Chr4 4269837 4574808 overlap Chr4 4492751 4527891 10.82456 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_wil.2_4269837_7_7 Chr4 4269837 4574808 trans Chr3 2719878 2737782 9.972054 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ct.1_21552617_5_2 Chr3 21552617 21716088 trans Chr3 20226663 21549780 47.53463 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ct.1_21552617_5_2 Chr3 21552617 21716088 trans Chr3 18021031 19850282 39.8421 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ct.1_21552617_5_2 Chr3 21552617 21716088 trans Chr3 21807612 21875620 36.2113 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ws.0_14328742_46_35 Chr3 14328742 14540862 overlap Chr3 14340453 14507303 86.1942 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_ws.0_14328742_46_35 Chr3 14328742 14540862 overlap Chr3 14511874 14528325 8.112737 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_ws.0_14328742_46_35 Chr3 14328742 14540862 overlap Chr3 14532767 14532857 6.742604 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_wil.2_18949309_7_1 Chr3 18949309 19050136 trans Chr3 19432105 19953383 13.93991 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_wil.2_18949309_7_1 Chr3 18949309 19050136 trans Chr3 20223904 21253043 9.805422 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_wil.2_18949309_7_1 Chr3 18949309 19050136 trans Chr4 183883 183883 9.630396 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_13603222_8_6 Chr3 13603222 13962348 overlap Chr3 13664773 13919575 16.59698 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_no.0_13603222_8_6 Chr3 13603222 13962348 trans Chr4 4256710 4260063 10.43778 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_13603222_8_6 Chr3 13603222 13962348 trans Chr5 14083595 14088002 8.293591 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_wu.0_9879_5_2 Chr2 9879 70102 cis Chr2 1173 67795 25.62123 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_wu.0_9879_5_2 Chr2 9879 70102 trans Chr4 139326 139326 18.03425 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_wu.0_9879_5_2 Chr2 9879 70102 trans Chr4 1274611 1306840 15.99091 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_ler.0_8378482_43_41 Chr5 8378482 8451217 overlap Chr5 8448428 8451180 51.3141 0 0 0 0 0 0 0 inf 1 0 0 inf 1 5_ler.0_8378482_43_41 Chr5 8378482 8451217 trans Chr1 12448569 16911960 15.83202 8404278 8446187 13408026 16406495 4 0.000371778648297 0 0 1 3 0 0 1 5_ler.0_8378482_43_41 Chr5 8378482 8451217 overlap Chr5 8445839 8445839 7.81316 0 0 0 0 0 0 0 inf 1 0 0 inf 1 5_tsu.0_17921632_5_2 Chr5 17921632 17938504 trans Chr5 17457691 17645355 23.40766 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_tsu.0_17921632_5_2 Chr5 17921632 17938504 cis Chr5 17755964 17921632 23.40766 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_tsu.0_17921632_5_2 Chr5 17921632 17938504 trans Chr5 17945963 18138395 16.65774 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_mt.0_6716905_10_6 Chr2 6716905 6729453 overlap Chr2 6718317 6725841 42.4058 0 0 0 0 0 0 0 inf 1 0 0 inf 1 2_mt.0_6716905_10_6 Chr2 6716905 6729453 trans Chr3 13202124 13204296 6.884009 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_mt.0_6716905_10_6 Chr2 6716905 6729453 trans Chr3 11196940 11238031 6.526046 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_can.0_10824780_6_5 Chr4 10824780 10933521 trans Chr4 10423617 10582473 104.3553 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_can.0_10824780_6_5 Chr4 10824780 10933521 trans Chr4 9174443 9429380 67.9163 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_can.0_10824780_6_5 Chr4 10824780 10933521 trans Chr4 9582539 10423529 64.69978 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_wil.2_13447513_6_6 Chr1 13447513 13917855 cis Chr1 13879985 14193754 42.9245 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_wil.2_13447513_6_6 Chr1 13447513 13917855 cis Chr1 13202022 13491496 24.05314 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_wil.2_13447513_6_6 Chr1 13447513 13917855 trans Chr1 15508807 15747660 15.58575 13493535 13653621 15513163 15680632 4 0.000725051760905 0 0 1 4 0 0 1 3_can.0_1724927_5_1 Chr3 1724927 1864135 trans Chr3 1056791 1507076 9.366539 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_can.0_1724927_5_1 Chr3 1724927 1864135 trans Chr3 981127 981936 7.24456 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_can.0_1724927_5_1 Chr3 1724927 1864135 trans Chr5 14067592 14067675 6.488564 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_edi.0_9879_6_5 Chr2 9879 131903 cis Chr2 1173 57080 14.22738 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_edi.0_9879_6_5 Chr2 9879 131903 trans Chr1 5294788 5295459 12.98432 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_edi.0_9879_6_5 Chr2 9879 131903 trans Chr1 5469475 5470342 12.69218 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_4699956_12_8 Chr4 4699956 4781195 overlap Chr4 4739069 4768617 44.27315 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_4699956_12_8 Chr4 4699956 4781195 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_4699956_12_8 Chr4 4699956 4781195 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_col.0_19995870_8_4 Chr3 19995870 20223145 trans Chr3 17534822 19935599 94.43777 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_col.0_19995870_8_4 Chr3 19995870 20223145 trans Chr3 20223904 21554741 68.17998 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_col.0_19995870_8_4 Chr3 19995870 20223145 trans Chr3 22052895 22116332 25.95472 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_8510844_6_5 Chr4 8510844 8607021 cis Chr4 8520833 8927430 178.0533 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_8510844_6_5 Chr4 8510844 8607021 trans Chr4 8951841 9545838 165.1203 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_8510844_6_5 Chr4 8510844 8607021 trans Chr4 9568188 10257058 76.93935 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_sf.2_4449400_5_4 Chr4 4449400 4604104 trans Chr3 90464 90464 16.77499 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_sf.2_4449400_5_4 Chr4 4449400 4604104 trans Chr4 4763683 4768334 10.69093 4565183 4565234 4764609 4764660 1 0.2 0 0 1 1 0 0 1 4_sf.2_4449400_5_4 Chr4 4449400 4604104 trans Chr3 814312 814312 6.411534 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_zu.0_18521583_5_3 Chr5 18521583 18633060 trans Chr4 17812305 18103258 20.81023 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_zu.0_18521583_5_3 Chr5 18521583 18633060 trans Chr3 221392 221392 11.39758 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_zu.0_18521583_5_3 Chr5 18521583 18633060 trans Chr3 470835 470835 11.39758 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_sf.2_9297386_6_4 Chr2 9297386 9318126 trans Chr1 554872 554872 12.69077 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_sf.2_9297386_6_4 Chr2 9297386 9318126 trans Chr4 4534340 4534513 12.1283 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_sf.2_9297386_6_4 Chr2 9297386 9318126 trans Chr2 9319445 10504273 11.35093 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_edi.0_9854085_5_4 Chr5 9854085 10059519 trans Chr5 10069840 11659431 36.15279 10023418 10023469 10924287 10924338 1 0.0666666666667 0 0 1 1 0 0 1 5_edi.0_9854085_5_4 Chr5 9854085 10059519 overlap Chr5 9935278 10050877 28.7152 0 0 0 0 0 0 0 inf 1 0 0 inf 1 5_edi.0_9854085_5_4 Chr5 9854085 10059519 trans Chr5 12063981 14066345 19.62111 9868418 10019877 12275437 13642816 3 0.000608959051179 0 0 1 3 0 0 1 3_edi.0_9011499_7_5 Chr3 9011499 9017115 cis Chr3 9011914 9017257 14.19526 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_edi.0_9011499_7_5 Chr3 9011499 9017115 trans Chr2 31397 31397 10.98584 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_edi.0_9011499_7_5 Chr3 9011499 9017115 trans Chr2 37283 37283 10.98584 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_wu.0_13147272_5_5 Chr3 13147272 13208696 trans Chr4 2816356 3943122 41.13125 13162163 13162214 3341994 3342045 1 0.1 0 0 1 1 0 0 1 3_wu.0_13147272_5_5 Chr3 13147272 13208696 trans Chr4 4314690 4367689 16.88281 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_wu.0_13147272_5_5 Chr3 13147272 13208696 trans Chr1 5885969 6591705 15.87102 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ler.0_13866739_6_4 Chr4 13866739 14008187 trans Chr4 12825842 13522478 122.9879 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ler.0_13866739_6_4 Chr4 13866739 14008187 trans Chr4 8978200 9173967 59.74205 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ler.0_13866739_6_4 Chr4 13866739 14008187 trans Chr4 10692648 10908862 48.74366 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_wu.0_11674215_5_5 Chr3 11674215 11693052 trans Chr4 8951841 8956267 16.84928 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_wu.0_11674215_5_5 Chr3 11674215 11693052 trans Chr4 1037571 1037911 7.968495 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_wu.0_11674215_5_5 Chr3 11674215 11693052 trans Chr4 9173967 9174429 6.50278 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_po.0_2414277_20_2 Chr4 2414277 2617691 cis Chr4 978 2409277 141.9313 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_po.0_2414277_20_2 Chr4 2414277 2617691 cis Chr4 2622691 4367511 141.9313 2588648 2589286 2718425 2719538 2 0.0145833333333 0 0 1 2 0 0 1 4_po.0_2414277_20_2 Chr4 2414277 2617691 trans Chr4 4550735 7081255 95.41578 2598412 2598463 5969211 5969262 1 0.05 0 0 1 1 0 0 1 4_po.0_2414277_20_2 Chr4 2414277 2617691 trans Chr2 52366 55486 11.41061 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_can.0_4595661_10_7 Chr4 4595661 4685479 overlap Chr4 4617840 4634606 35.89998 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_can.0_4595661_10_7 Chr4 4595661 4685479 trans Chr2 16686900 16686937 10.45398 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_can.0_4595661_10_7 Chr4 4595661 4685479 trans Chr1 5885969 6591705 7.275172 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ler.0_4696358_16_6 Chr4 4696358 4768660 trans Chr5 20814458 20815457 9.363324 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ler.0_4696358_16_6 Chr4 4696358 4768660 trans Chr3 763281 763281 7.820254 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ler.0_4696358_16_6 Chr4 4696358 4768660 trans Chr4 3646914 3778796 7.746555 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_4209623_25_25 Chr4 4209623 4358207 cis Chr4 151500 4204623 103.5983 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_4209623_25_25 Chr4 4209623 4358207 cis Chr4 4363207 7768297 103.5983 4209737 4345836 4445984 6079157 21 0.00106545527935 0.0 0.0 0.000999000999001 12 0.0 0.0 0.000999000999001 4_wu.0_4209623_25_25 Chr4 4209623 4358207 trans Chr4 129553 129553 7.095265 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_4209623_25_25 Chr4 4209623 4358207 trans Chr4 7947806 8012099 6.412716 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_mt.0_15880246_7_7 Chr1 15880246 16124937 cis Chr1 16118477 17269143 13.42056 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_mt.0_15880246_7_7 Chr1 15880246 16124937 trans Chr1 13753752 13827683 10.77439 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_mt.0_15880246_7_7 Chr1 15880246 16124937 trans Chr4 72640 72640 10.67226 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_mt.0_13979661_8_8 Chr3 13979661 14245377 trans Chr3 12810616 13664923 37.92685 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_mt.0_13979661_8_8 Chr3 13979661 14245377 trans Chr3 14255403 16725456 30.15447 14082385 14245270 14476188 16293349 5 2.8954240764e-05 0.0 0.0 0.000999000999001 3 0.0 0.0 0.000999000999001 3_mt.0_13979661_8_8 Chr3 13979661 14245377 cis Chr3 13983378 14245383 28.12674 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ct.1_13891093_11_7 Chr3 13891093 14005267 overlap Chr3 13916050 13965194 10.70044 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_ct.1_13891093_11_7 Chr3 13891093 14005267 trans Chr4 182432 182432 8.527401 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ct.1_13891093_11_7 Chr3 13891093 14005267 trans Chr4 194935 194935 8.503252 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_13890947_6_4 Chr3 13890947 13965682 overlap Chr3 13955337 13958172 8.432126 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_no.0_13890947_6_4 Chr3 13890947 13965682 trans Chr4 4766334 4766334 6.562895 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_13890947_6_4 Chr3 13890947 13965682 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_oy.0_13554998_13_10 Chr3 13554998 13983322 overlap Chr3 13580848 13923082 21.27154 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_oy.0_13554998_13_10 Chr3 13554998 13983322 trans Chr3 14374502 14474953 11.31831 13827433 13961824 14386289 14431855 3 0.000460454016939 0 0 1 2 0 0 1 3_oy.0_13554998_13_10 Chr3 13554998 13983322 trans Chr3 14475219 14475365 6.967863 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_kn.0_4454535_11_8 Chr4 4454535 4589018 trans Chr4 2840429 3943122 14.52284 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_kn.0_4454535_11_8 Chr4 4454535 4589018 overlap Chr4 4505447 4506174 6.55313 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_kn.0_4454535_11_8 Chr4 4454535 4589018 trans Chr1 5950385 5979374 6.315442 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_13757353_9_3 Chr4 13757353 13806117 trans Chr4 11312091 13527729 212.6443 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_13757353_9_3 Chr4 13757353 13806117 trans Chr4 10660879 10935436 74.04806 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_13757353_9_3 Chr4 13757353 13806117 trans Chr4 10486852 10582473 52.70949 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_ct.1_9879_6_2 Chr2 9879 379654 trans Chr4 10398635 10423768 14.41888 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_ct.1_9879_6_2 Chr2 9879 379654 trans Chr5 26729078 26824976 13.87485 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_ct.1_9879_6_2 Chr2 9879 379654 trans Chr1 9260872 9470091 10.3586 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_26881725_14_7 Chr1 26881725 26991702 cis Chr1 26745783 26876725 80.02128 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_26881725_14_7 Chr1 26881725 26991702 cis Chr1 26996702 29266364 80.02128 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_26881725_14_7 Chr1 26881725 26991702 trans Chr1 26331434 26742674 42.86896 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_26881725_14_7 Chr1 26881725 26991702 trans Chr1 26138333 26280567 15.21884 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_rsch.4_13960094_5_5 Chr3 13960094 14340872 trans Chr3 9501614 13567502 25.88992 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_rsch.4_13960094_5_5 Chr3 13960094 14340872 overlap Chr3 13982461 14325531 23.48617 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_rsch.4_13960094_5_5 Chr3 13960094 14340872 trans Chr3 15000663 17838473 19.62111 14035320 14265256 15109459 17507164 6 3.82674724785e-05 0.0 0.0 0.000999000999001 3 0.0 0.0 0.000999000999001 4_sf.2_13520350_6_6 Chr4 13520350 13648145 cis Chr4 12835632 13515350 77.47378 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_sf.2_13520350_6_6 Chr4 13520350 13648145 cis Chr4 13653145 13757718 77.47378 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_sf.2_13520350_6_6 Chr4 13520350 13648145 trans Chr4 10660879 10935436 33.72038 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_sf.2_13520350_6_6 Chr4 13520350 13648145 trans Chr4 8951841 8981341 32.80519 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_po.0_4319643_10_8 Chr4 4319643 4722200 cis Chr4 4319642 4314643 90.52377 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_po.0_4319643_10_8 Chr4 4319643 4722200 cis Chr4 4727200 4763095 90.52377 4541899 4541950 4735025 4735076 1 0.1 0 0 1 1 0 0 1 4_po.0_4319643_10_8 Chr4 4319643 4722200 trans Chr4 4768088 6180365 14.4293 4325363 4714785 4839503 6036154 9 0.000732876231178 0.0 0.0 0.000999000999001 7 0.0 0.0 0.000999000999001 4_po.0_4319643_10_8 Chr4 4319643 4722200 trans Chr4 1653418 4233417 13.61827 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_sf.2_4313471_8_8 Chr4 4313471 4604382 overlap Chr4 4332819 4579913 17.48193 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_sf.2_4313471_8_8 Chr4 4313471 4604382 trans Chr4 4255124 4260063 12.70511 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_sf.2_4313471_8_8 Chr4 4313471 4604382 trans Chr1 15795996 15799211 8.543141 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_no.0_15419437_6_6 Chr1 15419437 15613469 trans Chr5 24442112 25315595 12.82634 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_no.0_15419437_6_6 Chr1 15419437 15613469 overlap Chr1 15501857 15594311 9.228836 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_no.0_15419437_6_6 Chr1 15419437 15613469 trans Chr1 14270940 14887870 7.200914 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_tsu.0_7454875_8_3 Chr4 7454875 7604294 cis Chr4 5794071 7449875 61.83931 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_tsu.0_7454875_8_3 Chr4 7454875 7604294 cis Chr4 7609294 8539521 61.83931 7509625 7524785 8050334 8144573 2 0.00327278677794 0 0 1 2 0 0 1 4_tsu.0_7454875_8_3 Chr4 7454875 7604294 trans Chr4 9583133 10397893 60.48412 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_tsu.0_7454875_8_3 Chr4 7454875 7604294 trans Chr4 9160040 9429380 42.45536 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_bur.0_17390673_13_4 Chr5 17390673 17491190 cis Chr5 17097371 17385673 60.26216 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_bur.0_17390673_13_4 Chr5 17390673 17491190 cis Chr5 17496190 18156746 60.26216 17412839 17412890 18112621 18112672 1 0.025641025641 0 0 1 1 0 0 1 5_bur.0_17390673_13_4 Chr5 17390673 17491190 trans Chr5 16503919 17034541 36.73376 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_bur.0_17390673_13_4 Chr5 17390673 17491190 trans Chr5 18240505 18597053 23.907 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_oy.0_15652906_6_2 Chr1 15652906 15821159 trans Chr4 284713 284713 15.31285 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_oy.0_15652906_6_2 Chr1 15652906 15821159 trans Chr1 23144138 23163969 10.10643 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_oy.0_15652906_6_2 Chr1 15652906 15821159 trans Chr1 22529922 22801175 9.913685 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_ler.0_14014243_5_4 Chr5 14014243 14067733 trans Chr5 14253050 15097567 110.1161 14015468 14015519 15052297 15052348 1 0.1 0 0 1 1 0 0 1 5_ler.0_14014243_5_4 Chr5 14014243 14067733 cis Chr5 13773490 14031622 39.48132 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_ler.0_14014243_5_4 Chr5 14014243 14067733 trans Chr5 15217875 15344031 39.24167 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_13147272_10_6 Chr3 13147272 13247287 overlap Chr3 13206266 13212650 9.847087 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_13147272_10_6 Chr3 13147272 13247287 trans Chr5 256010 256010 8.704357 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_13147272_10_6 Chr3 13147272 13247287 trans Chr5 259377 259377 8.686677 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_bur.0_12680497_14_2 Chr5 12680497 12786242 cis Chr5 12229336 12692928 18.03814 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_bur.0_12680497_14_2 Chr5 12680497 12786242 overlap Chr5 12744965 12763281 11.14575 0 0 0 0 0 0 0 inf 1 0 0 inf 1 5_bur.0_12680497_14_2 Chr5 12680497 12786242 trans Chr5 17663145 17754916 10.78634 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_zu.0_9605779_6_2 Chr3 9605779 9635635 trans Chr4 198469 198533 12.83113 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_zu.0_9605779_6_2 Chr3 9605779 9635635 trans Chr4 201432 201432 12.81694 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_zu.0_9605779_6_2 Chr3 9605779 9635635 overlap Chr3 9613920 9624824 8.822866 0 0 0 0 0 0 0 inf 1 0 0 inf 1 2_rsch.4_9879_9_4 Chr2 9879 69905 trans Chr3 15028316 19921562 31.78996 67004 69932 15033932 17241079 2 0.0082304526749 0 0 1 1 0 0 1 2_rsch.4_9879_9_4 Chr2 9879 69905 trans Chr2 69911 70108 20.02657 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_rsch.4_9879_9_4 Chr2 9879 69905 trans Chr3 13982461 14274690 17.95715 10163 10214 14201677 14201728 1 0.000888888888889 0 0 1 1 0 0 1 5_zu.0_10020036_15_10 Chr5 10020036 10115500 cis Chr5 5667247 10082052 29.45921 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_zu.0_10020036_15_10 Chr5 10020036 10115500 trans Chr5 11659431 13977258 16.88424 10075828 10075879 12674875 12674926 1 0.0357142857143 0 0 1 1 0 0 1 5_zu.0_10020036_15_10 Chr5 10020036 10115500 cis Chr5 10087527 11629255 15.50451 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_zu.0_15584330_7_7 Chr1 15584330 15921802 trans Chr1 12416027 14923470 30.66097 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_zu.0_15584330_7_7 Chr1 15584330 15921802 cis Chr1 15619814 16713581 30.66097 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_zu.0_15584330_7_7 Chr1 15584330 15921802 trans Chr1 22028410 22083094 12.03009 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_1712344_6_1 Chr3 1712344 1860932 trans Chr3 3153995 6970653 60.86854 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_1712344_6_1 Chr3 1712344 1860932 trans Chr3 2094670 3106731 47.74761 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_1712344_6_1 Chr3 1712344 1860932 trans Chr3 98 1702550 22.09723 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_po.0_17456077_12_2 Chr5 17456077 17643447 cis Chr5 16550406 17451077 67.48215 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_po.0_17456077_12_2 Chr5 17456077 17643447 cis Chr5 17648447 18169709 67.48215 17532115 17532166 17864082 17864133 1 0.0277777777778 0 0 1 1 0 0 1 5_po.0_17456077_12_2 Chr5 17456077 17643447 trans Chr5 18212011 18879013 37.49549 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_po.0_17456077_12_2 Chr5 17456077 17643447 trans Chr5 16381358 16461843 13.02004 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_wu.0_12928786_5_5 Chr3 12928786 13204452 trans Chr4 17812305 18103258 16.74566 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_wu.0_12928786_5_5 Chr3 12928786 13204452 overlap Chr3 12995749 13171780 14.32124 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_wu.0_12928786_5_5 Chr3 12928786 13204452 trans Chr3 14534250 14539505 14.25415 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_13892198_5_5 Chr3 13892198 14343041 trans Chr3 9760471 11924806 19.62111 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_13892198_5_5 Chr3 13892198 14343041 trans Chr3 12019880 13580848 19.62111 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_13892198_5_5 Chr3 13892198 14343041 overlap Chr3 13979661 14337295 19.62111 0 0 0 0 0 0 0 inf 1 0 0 inf 1 5_wu.0_19949605_7_3 Chr5 19949605 20104928 cis Chr5 19526648 19952293 33.33056 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_wu.0_19949605_7_3 Chr5 19949605 20104928 trans Chr5 17665354 17926748 26.45945 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_wu.0_19949605_7_3 Chr5 19949605 20104928 trans Chr5 18138330 18164731 22.5479 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_ws.0_12603649_12_1 Chr1 12603649 12666813 overlap Chr1 12659798 12660199 27.86854 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_ws.0_12603649_12_1 Chr1 12603649 12666813 cis Chr1 12660454 12735241 8.797642 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_ws.0_12603649_12_1 Chr1 12603649 12666813 overlap Chr1 12607967 12659024 8.507154 0 0 0 0 0 0 0 inf 1 0 0 inf 1 2_can.0_1801382_9_2 Chr2 1801382 1824993 trans Chr5 10060211 20069323 212.6443 1804080 1810227 10853665 14670454 4 0.0134722222222 0 0 1 3 0 0 1 2_can.0_1801382_9_2 Chr2 1801382 1824993 trans Chr5 9494370 10050032 23.10057 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_can.0_1801382_9_2 Chr2 1801382 1824993 overlap Chr2 1801701 1821287 20.02717 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_ct.1_14374491_10_1 Chr3 14374491 14483419 overlap Chr3 14379490 14475575 38.82118 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_ct.1_14374491_10_1 Chr3 14374491 14483419 trans Chr5 26729078 26732448 6.848098 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ct.1_14374491_10_1 Chr3 14374491 14483419 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_15711235_10_2 Chr3 15711235 15821944 overlap Chr3 15711361 15726863 22.35832 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_15711235_10_2 Chr3 15711235 15821944 trans Chr1 8589462 11206737 15.68496 15711223 15726580 11178328 11178940 5 0.00263688675726 0.0 0.0 0.000999000999001 3 0.0 0.0 0.000999000999001 3_hi.0_15711235_10_2 Chr3 15711235 15821944 trans Chr1 6984029 7466217 6.854586 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_kn.0_23542260_12_2 Chr5 23542260 23680611 cis Chr5 20954362 23537260 41.62062 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_kn.0_23542260_12_2 Chr5 23542260 23680611 cis Chr5 23685611 26938137 41.62062 23593484 23593535 26350997 26351048 1 0.0277777777778 0 0 1 1 0 0 1 5_kn.0_23542260_12_2 Chr5 23542260 23680611 trans Chr5 20807146 20807292 12.13149 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_kn.0_23542260_12_2 Chr5 23542260 23680611 trans Chr5 18633377 18988524 10.02049 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_can.0_9251168_25_12 Chr2 9251168 9319678 cis Chr2 7213526 9246168 29.77679 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_can.0_9251168_25_12 Chr2 9251168 9319678 cis Chr2 9324678 10582229 29.77679 9269647 9282168 9330550 9681019 10 0.00387829562546 0.0 0.0 0.000999000999001 9 0.0 0.0 0.000999000999001 2_can.0_9251168_25_12 Chr2 9251168 9319678 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_can.0_9251168_25_12 Chr2 9251168 9319678 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_tsu.0_13770649_13_8 Chr5 13770649 14094464 cis Chr5 5666136 13765649 47.61895 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_tsu.0_13770649_13_8 Chr5 13770649 14094464 cis Chr5 14099464 15092715 47.61895 13829190 14092653 14101115 15052663 17 0.000641391406458 0.0 0.0 0.000999000999001 10 0.0 0.0 0.000999000999001 5_tsu.0_13770649_13_8 Chr5 13770649 14094464 trans Chr5 15328462 17258012 19.86233 13898812 14065572 15905962 16981727 20 0.00116429702355 0.0 0.0 0.000999000999001 9 0.0 0.0 0.000999000999001 5_tsu.0_13770649_13_8 Chr5 13770649 14094464 trans Chr5 5279639 5665738 11.33092 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_oy.0_4571011_12_3 Chr4 4571011 4635113 overlap Chr4 4590558 4604683 18.41389 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_oy.0_4571011_12_3 Chr4 4571011 4635113 overlap Chr4 4627051 4630142 15.03823 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_oy.0_4571011_12_3 Chr4 4571011 4635113 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wil.2_13798574_6_3 Chr4 13798574 13867374 trans Chr4 12825842 13522478 122.9879 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wil.2_13798574_6_3 Chr4 13798574 13867374 trans Chr4 8978200 9173967 59.74205 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wil.2_13798574_6_3 Chr4 13798574 13867374 trans Chr4 10692648 10908862 48.74366 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_ws.0_13469040_6_2 Chr1 13469040 13493772 trans Chr4 183883 183883 12.26933 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_ws.0_13469040_6_2 Chr1 13469040 13493772 overlap Chr1 13473202 13473202 9.237755 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_ws.0_13469040_6_2 Chr1 13469040 13493772 trans Chr1 15649579 15650952 6.466148 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_can.0_22842788_5_1 Chr1 22842788 22855934 trans Chr1 22856104 24175168 20.11362 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_can.0_22842788_5_1 Chr1 22842788 22855934 trans Chr5 20808019 20808987 15.62736 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_can.0_22842788_5_1 Chr1 22842788 22855934 trans Chr1 24179931 24694809 10.89223 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_ws.0_15098530_11_1 Chr5 15098530 15217844 overlap Chr5 15108607 15198900 54.60733 0 0 0 0 0 0 0 inf 1 0 0 inf 1 5_ws.0_15098530_11_1 Chr5 15098530 15217844 trans Chr5 20808019 20808987 10.4053 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_ws.0_15098530_11_1 Chr5 15098530 15217844 trans Chr5 13773920 13792294 7.683007 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_14474955_6_3 Chr3 14474955 14587499 trans Chr4 18315540 18358665 16.98454 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_14474955_6_3 Chr3 14474955 14587499 trans Chr4 17688113 17718890 13.59162 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_14474955_6_3 Chr3 14474955 14587499 trans Chr4 16440869 16440869 12.18984 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_sf.2_6190763_5_5 Chr1 6190763 6330348 trans Chr1 7179863 7431878 86.58909 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_sf.2_6190763_5_5 Chr1 6190763 6330348 trans Chr1 5294788 5470342 42.31675 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_sf.2_6190763_5_5 Chr1 6190763 6330348 trans Chr4 10581829 10582473 17.03176 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_4309953_6_5 Chr4 4309953 4594916 trans Chr5 11296095 11431660 16.92186 4358162 4360045 11412600 11412775 4 0.0780423280423 0 0 1 3 0 0 1 4_wu.0_4309953_6_5 Chr4 4309953 4594916 trans Chr5 13 150227 13.8965 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_4309953_6_5 Chr4 4309953 4594916 trans Chr1 9260872 9470091 9.774827 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_can.0_5214597_5_1 Chr1 5214597 5296858 trans Chr1 4302943 4855774 22.30823 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_can.0_5214597_5_1 Chr1 5214597 5296858 cis Chr1 5294788 5470342 22.04481 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_can.0_5214597_5_1 Chr1 5214597 5296858 trans Chr1 5125823 5186968 17.12081 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_po.0_7604761_9_2 Chr4 7604761 7688098 trans Chr4 5789880 7523060 55.42668 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_po.0_7604761_9_2 Chr4 7604761 7688098 cis Chr4 7601347 7599761 49.26702 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_po.0_7604761_9_2 Chr4 7604761 7688098 cis Chr4 7693098 8539521 49.26702 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_po.0_7604761_9_2 Chr4 7604761 7688098 trans Chr4 9585571 10308926 30.93897 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_1626434_7_4 Chr4 1626434 1767894 cis Chr4 1612602 1621434 21.31231 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_1626434_7_4 Chr4 1626434 1767894 cis Chr4 1772894 1767956 21.31231 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_1626434_7_4 Chr4 1626434 1767894 trans Chr4 4604387 4712227 11.39426 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_1626434_7_4 Chr4 1626434 1767894 trans Chr1 15795996 15799211 10.46644 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_mt.0_15052937_5_1 Chr5 15052937 15111967 cis Chr5 14279999 15053728 63.29863 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_mt.0_15052937_5_1 Chr5 15052937 15111967 cis Chr5 15098791 15344031 50.35486 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_mt.0_15052937_5_1 Chr5 15052937 15111967 trans Chr5 13879550 14067675 42.4013 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wil.2_1261_9_3 Chr4 1261 423239 overlap Chr4 421592 422453 23.43426 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_wil.2_1261_9_3 Chr4 1261 423239 cis Chr4 978 421063 17.76287 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wil.2_1261_9_3 Chr4 1261 423239 trans Chr4 423249 425264 14.76535 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_edi.0_16476558_13_11 Chr1 16476558 16579531 overlap Chr1 16489026 16561336 35.9784 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_edi.0_16476558_13_11 Chr1 16476558 16579531 cis Chr1 16561648 16880820 10.01505 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_edi.0_16476558_13_11 Chr1 16476558 16579531 trans Chr1 16130429 16472780 9.252531 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_oy.0_1337447_10_1 Chr2 1337447 1448608 cis Chr2 584455 1379823 11.38979 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_oy.0_1337447_10_1 Chr2 1337447 1448608 cis Chr2 1403945 1568117 11.17861 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_oy.0_1337447_10_1 Chr2 1337447 1448608 overlap Chr2 1387427 1392457 10.36184 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_22643031_5_1 Chr3 22643031 22711374 trans Chr3 20772235 21253043 20.95796 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_22643031_5_1 Chr3 22643031 22711374 trans Chr3 22719328 23286873 17.15891 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_22643031_5_1 Chr3 22643031 22711374 trans Chr4 11308676 11309961 15.85254 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_hi.0_13204774_6_1 Chr1 13204774 13379884 trans Chr1 11069710 12992137 15.63383 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_hi.0_13204774_6_1 Chr1 13204774 13379884 trans Chr2 31397 41299 15.26657 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_hi.0_13204774_6_1 Chr1 13204774 13379884 trans Chr1 16114833 16410192 12.99425 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_po.0_6810704_5_3 Chr2 6810704 7163176 overlap Chr2 6812141 7131194 25.88992 0 0 0 0 0 0 0 inf 1 0 0 inf 1 2_po.0_6810704_5_3 Chr2 6810704 7163176 trans Chr2 6393468 6797266 16.08667 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_po.0_6810704_5_3 Chr2 6810704 7163176 trans Chr5 15019018 15053728 15.45239 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_po.0_26267878_5_2 Chr1 26267878 26733820 overlap Chr1 26280593 26724252 110.1161 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_po.0_26267878_5_2 Chr1 26267878 26733820 trans Chr1 26800835 26882288 23.54651 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_po.0_26267878_5_2 Chr1 26267878 26733820 trans Chr1 26980254 29266364 14.79038 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_tsu.0_5470498_8_3 Chr1 5470498 5611681 trans Chr1 7231868 7431878 40.09059 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_tsu.0_5470498_8_3 Chr1 5470498 5611681 trans Chr1 5294788 5470342 24.12843 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_tsu.0_5470498_8_3 Chr1 5470498 5611681 cis Chr1 5586347 5641266 19.0198 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_13140729_15_8 Chr3 13140729 13213517 overlap Chr3 13203918 13212106 19.03335 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_13140729_15_8 Chr3 13140729 13213517 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_13140729_15_8 Chr3 13140729 13213517 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_17454522_24_1 Chr3 17454522 17535108 cis Chr3 16122840 17449522 57.30831 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_17454522_24_1 Chr3 17454522 17535108 cis Chr3 17540108 18978676 57.30831 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_17454522_24_1 Chr3 17454522 17535108 trans Chr3 16038336 16109030 7.945672 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_17454522_24_1 Chr3 17454522 17535108 trans Chr5 16997342 17210640 7.752436 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_tsu.0_9879_10_4 Chr2 9879 293854 cis Chr2 1173 41926 23.03792 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_tsu.0_9879_10_4 Chr2 9879 293854 overlap Chr2 56424 57080 11.61914 0 0 0 0 0 0 0 inf 1 0 0 inf 1 2_tsu.0_9879_10_4 Chr2 9879 293854 trans Chr1 22009275 23602878 9.499513 41573 41946 22620078 22620187 2 0.111111111111 0 0 1 2 0 0 1 1_wil.2_18962350_14_13 Chr1 18962350 18972047 overlap Chr1 18962842 18970804 26.94121 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_wil.2_18962350_14_13 Chr1 18962350 18972047 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_wil.2_18962350_14_13 Chr1 18962350 18972047 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_rsch.4_15504886_5_5 Chr1 15504886 16054404 cis Chr1 15989074 16114319 20.83979 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_rsch.4_15504886_5_5 Chr1 15504886 16054404 trans Chr4 227851 227851 16.93442 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_rsch.4_15504886_5_5 Chr1 15504886 16054404 trans Chr1 13528324 13537387 10.21906 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_edi.0_5641896_6_5 Chr1 5641896 5953923 trans Chr1 7179863 7431878 63.65571 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_edi.0_5641896_6_5 Chr1 5641896 5953923 trans Chr1 5294788 5470342 33.9945 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_edi.0_5641896_6_5 Chr1 5641896 5953923 trans Chr1 6322449 6861681 20.56021 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_zu.0_13965657_9_9 Chr3 13965657 14339320 trans Chr3 14539278 17590172 50.12127 13988518 14235284 14912879 17507285 17 6.93998669658e-05 0.0 0.0 0.000999000999001 8 0.0 0.0 0.000999000999001 3_zu.0_13965657_9_9 Chr3 13965657 14339320 trans Chr3 10914346 13605493 45.93716 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_zu.0_13965657_9_9 Chr3 13965657 14339320 cis Chr3 14287043 14340333 45.71635 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_hi.0_13170042_7_4 Chr1 13170042 13491500 overlap Chr1 13205235 13491496 28.32321 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_hi.0_13170042_7_4 Chr1 13170042 13491500 trans Chr1 16053662 16645459 22.31285 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_hi.0_13170042_7_4 Chr1 13170042 13491500 trans Chr1 15008690 15914259 18.144 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_po.0_15584330_10_7 Chr1 15584330 15988533 cis Chr1 15585439 16078066 82.5622 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_po.0_15584330_10_7 Chr1 15584330 15988533 trans Chr1 12435217 14303701 73.49759 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_po.0_15584330_10_7 Chr1 15584330 15988533 trans Chr1 16113390 16942740 66.12316 15817158 15917110 16113834 16558178 3 0.000879307253549 0 0 1 3 0 0 1 1_po.0_24360430_7_1 Chr1 24360430 24699537 cis Chr1 23830126 24694809 134.3393 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_po.0_24360430_7_1 Chr1 24360430 24699537 trans Chr1 23263534 23753847 74.90496 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_po.0_24360430_7_1 Chr1 24360430 24699537 trans Chr1 19314783 19424966 52.19451 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_mt.0_5913037_5_1 Chr2 5913037 5991491 trans Chr4 182432 182432 18.19491 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_mt.0_5913037_5_1 Chr2 5913037 5991491 trans Chr4 194935 194935 18.19491 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_mt.0_5913037_5_1 Chr2 5913037 5991491 trans Chr1 22028410 22083094 17.98381 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_rsch.4_9642354_5_5 Chr1 9642354 9949796 cis Chr1 9115799 9642354 163.0643 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_rsch.4_9642354_5_5 Chr1 9642354 9949796 trans Chr1 10625401 11025424 67.15197 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_rsch.4_9642354_5_5 Chr1 9642354 9949796 trans Chr1 12481590 14200512 25.88992 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_6907428_12_2 Chr4 6907428 7103401 cis Chr4 5789131 6902428 67.34992 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_6907428_12_2 Chr4 6907428 7103401 cis Chr4 7108401 8450259 67.34992 7027749 7027800 7273655 7273706 1 0.0833333333333 0 0 1 1 0 0 1 4_wu.0_6907428_12_2 Chr4 6907428 7103401 trans Chr4 5123342 5779401 19.015 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_6907428_12_2 Chr4 6907428 7103401 trans Chr4 9585571 10161502 16.93625 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_1801341_5_1 Chr3 1801341 2065822 trans Chr3 98 1797415 36.15279 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_1801341_5_1 Chr3 1801341 2065822 trans Chr4 2844565 3943122 18.93925 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_tsu.0_1801341_5_1 Chr3 1801341 2065822 overlap Chr3 1801893 2059255 18.40829 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_21870955_10_10 Chr3 21870955 22048627 trans Chr3 17838473 19850282 148.2512 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_21870955_10_10 Chr3 21870955 22048627 cis Chr3 19995870 21865955 118.3845 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_21870955_10_10 Chr3 21870955 22048627 cis Chr3 22053627 22349052 118.3845 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_21870955_10_10 Chr3 21870955 22048627 trans Chr3 22466444 23371191 28.65756 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_po.0_14067993_5_5 Chr3 14067993 14381162 trans Chr4 523764 523764 21.98398 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_po.0_14067993_5_5 Chr3 14067993 14381162 overlap Chr3 14076474 14328538 21.41793 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_po.0_14067993_5_5 Chr3 14067993 14381162 trans Chr4 2844270 3943122 20.15826 14158469 14158520 3473645 3473696 1 0.0666666666667 0 0 1 1 0 0 1 4_kn.0_16714932_9_2 Chr4 16714932 16895709 trans Chr4 16248036 16696603 137.6275 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_kn.0_16714932_9_2 Chr4 16714932 16895709 trans Chr4 10486852 10582473 51.15971 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_kn.0_16714932_9_2 Chr4 16714932 16895709 trans Chr4 10692738 10899006 39.84376 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_po.0_18210207_6_5 Chr5 18210207 18598071 overlap Chr5 18240633 18595556 22.22254 0 0 0 0 0 0 0 inf 1 0 0 inf 1 5_po.0_18210207_6_5 Chr5 18210207 18598071 trans Chr5 17457640 17636293 21.47425 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_po.0_18210207_6_5 Chr5 18210207 18598071 trans Chr5 15707691 16298343 21.25174 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_12694775_9_7 Chr3 12694775 12812758 trans Chr1 9470474 9888158 22.11072 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_12694775_9_7 Chr3 12694775 12812758 trans Chr1 224178 224178 11.4716 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_12694775_9_7 Chr3 12694775 12812758 trans Chr4 182432 182432 9.418922 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_11966690_11_2 Chr4 11966690 12118544 cis Chr4 11440394 11961690 230.2479 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_11966690_11_2 Chr4 11966690 12118544 cis Chr4 12123544 13527729 230.2479 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_11966690_11_2 Chr4 11966690 12118544 trans Chr4 10660879 10935436 93.06443 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_11966690_11_2 Chr4 11966690 12118544 trans Chr4 10423617 10582473 55.53639 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_kn.0_9400943_5_2 Chr1 9400943 9674561 cis Chr1 9115799 9642354 64.53797 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_kn.0_9400943_5_2 Chr1 9400943 9674561 trans Chr1 10625401 11014726 33.67303 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_kn.0_9400943_5_2 Chr1 9400943 9674561 trans Chr1 9888623 10246959 27.28894 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_4207240_8_6 Chr4 4207240 4367374 overlap Chr4 4210476 4319997 37.52175 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_4207240_8_6 Chr4 4207240 4367374 trans Chr4 257597 257597 8.16922 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_4207240_8_6 Chr4 4207240 4367374 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_can.0_4718923_7_5 Chr4 4718923 4773572 overlap Chr4 4763179 4768186 12.01812 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_can.0_4718923_7_5 Chr4 4718923 4773572 trans Chr1 22028410 22083094 11.28006 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_can.0_4718923_7_5 Chr4 4718923 4773572 trans Chr4 182432 182432 10.22915 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wil.2_4288786_17_15 Chr4 4288786 4377333 trans Chr4 4604382 5579463 24.74484 4306523 4373014 4738690 5485513 9 0.00112873142084 0.0 0.0 0.000999000999001 7 0.0 0.0 0.000999000999001 4_wil.2_4288786_17_15 Chr4 4288786 4377333 cis Chr4 1679257 4319671 23.90267 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wil.2_4288786_17_15 Chr4 4288786 4377333 trans Chr4 1261675 1653929 10.85017 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_wil.2_8513691_6_1 Chr2 8513691 8591565 trans Chr1 5885969 6655570 15.44264 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_wil.2_8513691_6_1 Chr2 8513691 8591565 trans Chr4 3040818 3943122 13.26595 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_wil.2_8513691_6_1 Chr2 8513691 8591565 trans Chr4 8951841 8951841 12.88491 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_zu.0_13567502_6_2 Chr3 13567502 13960525 overlap Chr3 13663954 13955480 34.5052 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_zu.0_13567502_6_2 Chr3 13567502 13960525 trans Chr1 14244726 14594057 12.26077 13656799 13656850 14474424 14474475 1 0.0333333333333 0 0 1 1 0 0 1 3_zu.0_13567502_6_2 Chr3 13567502 13960525 trans Chr2 10332690 10332909 11.79143 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_sf.2_7158029_13_8 Chr2 7158029 7253306 cis Chr2 6207554 7153029 44.75793 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_sf.2_7158029_13_8 Chr2 7158029 7253306 cis Chr2 7258306 8422824 44.75793 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_sf.2_7158029_13_8 Chr2 7158029 7253306 trans Chr2 5651640 5905815 14.46161 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_sf.2_7158029_13_8 Chr2 7158029 7253306 trans Chr2 2724556 2729969 7.254938 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_4588628_24_15 Chr4 4588628 4741601 overlap Chr4 4606735 4712292 32.97482 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_4588628_24_15 Chr4 4588628 4741601 cis Chr4 4740277 4763095 9.627244 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_4588628_24_15 Chr4 4588628 4741601 trans Chr4 1245029 1303649 9.611357 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_hi.0_14864223_11_2 Chr5 14864223 15112049 overlap Chr5 14881776 15107666 50.54445 0 0 0 0 0 0 0 inf 1 0 0 inf 1 5_hi.0_14864223_11_2 Chr5 14864223 15112049 trans Chr5 8945484 14068970 25.2178 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_hi.0_14864223_11_2 Chr5 14864223 15112049 trans Chr5 15328786 16843082 25.12443 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ws.0_4196767_32_28 Chr4 4196767 4333198 cis Chr4 176373 4191767 47.43701 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ws.0_4196767_32_28 Chr4 4196767 4333198 cis Chr4 4338198 4445731 47.43701 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ws.0_4196767_32_28 Chr4 4196767 4333198 trans Chr4 4534340 7342620 26.99441 4212564 4319657 4600168 5624156 24 0.00175337509519 0.0 0.0 0.000999000999001 15 0.0 0.0 0.000999000999001 4_ws.0_4196767_32_28 Chr4 4196767 4333198 trans Chr4 978 121344 10.07942 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_ct.1_26118057_11_1 Chr1 26118057 26214654 cis Chr1 24695005 26113057 47.03917 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_ct.1_26118057_11_1 Chr1 26118057 26214654 cis Chr1 26219654 26921601 47.03917 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_ct.1_26118057_11_1 Chr1 26118057 26214654 trans Chr1 26921629 29858357 30.31737 26196065 26196116 28337472 28337523 1 0.0454545454545 0 0 1 1 0 0 1 1_ct.1_26118057_11_1 Chr1 26118057 26214654 trans Chr1 24549269 24694485 12.03273 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_can.0_9555146_6_1 Chr4 9555146 9582520 overlap Chr4 9576390 9580904 19.15499 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_can.0_9555146_6_1 Chr4 9555146 9582520 cis Chr4 9581536 9656578 11.84377 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_can.0_9555146_6_1 Chr4 9555146 9582520 trans Chr4 10618480 10842286 8.713344 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_wu.0_13960881_8_8 Chr3 13960881 14471529 trans Chr3 11040808 13580813 30.15447 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_wu.0_13960881_8_8 Chr3 13960881 14471529 overlap Chr3 13983760 14425640 24.67064 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_wu.0_13960881_8_8 Chr3 13960881 14471529 trans Chr3 14538837 16561618 24.67064 13998530 14462618 14565502 16194382 20 8.16034177867e-05 0.0 0.0 0.000999000999001 7 0.0 0.0 0.000999000999001 2_hi.0_6145286_18_13 Chr2 6145286 6393882 cis Chr2 6174916 8451105 64.27178 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_hi.0_6145286_18_13 Chr2 6145286 6393882 trans Chr2 2305758 4785297 36.45444 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_hi.0_6145286_18_13 Chr2 6145286 6393882 trans Chr2 5006039 5952810 27.64973 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_hi.0_9483855_19_16 Chr4 9483855 9580501 cis Chr4 7784839 9478855 47.47193 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_hi.0_9483855_19_16 Chr4 9483855 9580501 cis Chr4 9585501 11520649 47.47193 9561667 9561718 10627067 10627118 1 0.0263157894737 0 0 1 1 0 0 1 4_hi.0_9483855_19_16 Chr4 9483855 9580501 trans Chr4 4721893 4722659 9.125621 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_hi.0_9483855_19_16 Chr4 9483855 9580501 trans Chr4 4720602 4721762 7.003105 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_sf.2_4504329_11_7 Chr4 4504329 4635890 overlap Chr4 4552962 4596081 18.25709 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_sf.2_4504329_11_7 Chr4 4504329 4635890 trans Chr5 11483246 11642917 10.10463 4505016 4505067 11535371 11535422 1 0.030303030303 0 0 1 1 0 0 1 4_sf.2_4504329_11_7 Chr4 4504329 4635890 trans Chr5 272102 272102 8.545232 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_hi.0_13905617_8_2 Chr1 13905617 14206263 cis Chr1 13895553 14191807 70.04484 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_hi.0_13905617_8_2 Chr1 13905617 14206263 trans Chr1 13202022 13733234 20.60574 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_hi.0_13905617_8_2 Chr1 13905617 14206263 trans Chr1 12690429 12995596 18.43896 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_sf.2_14443842_29_15 Chr3 14443842 14539881 overlap Chr3 14519998 14531020 12.87271 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_sf.2_14443842_29_15 Chr3 14443842 14539881 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_sf.2_14443842_29_15 Chr3 14443842 14539881 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_rsch.4_15604622_5_2 Chr1 15604622 15797152 trans Chr4 230711 230711 17.29389 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_rsch.4_15604622_5_2 Chr1 15604622 15797152 trans Chr5 26729078 26824976 15.68112 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_rsch.4_15604622_5_2 Chr1 15604622 15797152 trans Chr3 391260 391260 6.16735 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_ler.0_5928579_11_11 Chr2 5928579 6272369 cis Chr2 6207877 7159821 89.69676 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_ler.0_5928579_11_11 Chr2 5928579 6272369 trans Chr2 5542391 5915177 48.43226 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_ler.0_5928579_11_11 Chr2 5928579 6272369 trans Chr2 1827794 5002947 41.34342 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_14484545_21_16 Chr3 14484545 14620672 overlap Chr3 14522522 14551916 38.46495 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_no.0_14484545_21_16 Chr3 14484545 14620672 trans Chr5 17755150 17755324 6.561121 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_14484545_21_16 Chr3 14484545 14620672 overlap Chr3 14521351 14521678 6.293015 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_ws.0_12941409_13_10 Chr3 12941409 13161942 overlap Chr3 12979893 13107060 20.96092 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_ws.0_12941409_13_10 Chr3 12941409 13161942 trans Chr4 2844565 2983457 11.00055 13025098 13025149 2852779 2852830 1 0.0769230769231 0 0 1 1 0 0 1 3_ws.0_12941409_13_10 Chr3 12941409 13161942 trans Chr3 7882060 7900885 10.1319 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_oy.0_4699641_31_10 Chr4 4699641 4778553 overlap Chr4 4763040 4768088 44.8839 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_oy.0_4699641_31_10 Chr4 4699641 4778553 trans Chr3 13573360 13806015 9.258562 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_oy.0_4699641_31_10 Chr4 4699641 4778553 trans Chr3 13208806 13213030 7.820368 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ws.0_9479583_12_2 Chr4 9479583 9579364 overlap Chr4 9480346 9488128 22.9104 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_ws.0_9479583_12_2 Chr4 9479583 9579364 cis Chr4 9568188 9680095 14.30405 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ws.0_9479583_12_2 Chr4 9479583 9579364 trans Chr4 8978200 9427899 13.76433 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_tsu.0_4380363_5_2 Chr4 4380363 4486638 trans Chr4 2844565 3943122 24.96385 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_tsu.0_4380363_5_2 Chr4 4380363 4486638 trans Chr1 22028410 22083094 22.4109 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_tsu.0_4380363_5_2 Chr4 4380363 4486638 trans Chr1 5885969 6655570 21.39045 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ws.0_14438409_49_11 Chr3 14438409 14551935 overlap Chr3 14474884 14486026 26.18563 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_ws.0_14438409_49_11 Chr3 14438409 14551935 trans Chr3 14375077 14425640 8.526383 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ws.0_14438409_49_11 Chr3 14438409 14551935 overlap Chr3 14486842 14494450 8.200173 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_hi.0_8897148_5_1 Chr1 8897148 9251865 trans Chr1 9260438 9470740 64.91081 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_hi.0_8897148_5_1 Chr1 8897148 9251865 trans Chr1 10644678 10964573 33.38256 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_hi.0_8897148_5_1 Chr1 8897148 9251865 trans Chr1 8293876 8395867 32.66993 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_hi.0_14073589_11_9 Chr5 14073589 14540455 cis Chr5 8584317 14068589 34.15305 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_hi.0_14073589_11_9 Chr5 14073589 14540455 cis Chr5 14545455 15092715 34.15305 14095703 14095754 15003801 15003852 1 0.0227272727273 0 0 1 1 0 0 1 5_hi.0_14073589_11_9 Chr5 14073589 14540455 trans Chr5 15354623 17177600 18.95112 14104145 14232775 15956761 17114257 3 0.000290633364403 0 0 1 3 0 0 1 5_hi.0_14073589_11_9 Chr5 14073589 14540455 trans Chr5 15188689 15254475 8.063733 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_wil.2_13970256_10_10 Chr3 13970256 14340231 overlap Chr3 14285318 14328717 27.73284 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_wil.2_13970256_10_10 Chr3 13970256 14340231 trans Chr3 10419623 13581021 24.91542 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_wil.2_13970256_10_10 Chr3 13970256 14340231 overlap Chr3 13983280 14272331 24.91542 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_no.0_10472449_10_7 Chr3 10472449 10485433 overlap Chr3 10479068 10483280 11.96693 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_no.0_10472449_10_7 Chr3 10472449 10485433 trans Chr2 57700 57700 9.71715 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_10472449_10_7 Chr3 10472449 10485433 trans Chr2 2344989 2344989 6.686893 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_po.0_6666263_10_2 Chr2 6666263 6797495 overlap Chr2 6691968 6795275 35.00048 0 0 0 0 0 0 0 inf 1 0 0 inf 1 2_po.0_6666263_10_2 Chr2 6666263 6797495 trans Chr2 5660828 5908503 11.46769 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_po.0_6666263_10_2 Chr2 6666263 6797495 trans Chr2 6350706 6350706 7.510674 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_can.0_13128112_9_8 Chr3 13128112 13234079 trans Chr4 3040818 3943122 9.700701 13158287 13172431 3122046 3920479 3 0.0045715732139 0 0 1 3 0 0 1 3_can.0_13128112_9_8 Chr3 13128112 13234079 trans Chr4 284713 284713 8.857422 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_can.0_13128112_9_8 Chr3 13128112 13234079 trans Chr3 12977620 13127736 7.952531 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_po.0_813470_12_1 Chr4 813470 1261744 cis Chr4 714624 1253923 75.88689 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_po.0_813470_12_1 Chr4 813470 1261744 trans Chr4 1396166 1675614 32.0819 953901 953952 1650574 1650625 1 0.0277777777778 0 0 1 1 0 0 1 4_po.0_813470_12_1 Chr4 813470 1261744 trans Chr4 2487648 2782540 28.37254 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_13983322_6_6 Chr3 13983322 14376858 trans Chr5 12759997 12769598 11.67746 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_13983322_6_6 Chr3 13983322 14376858 trans Chr3 11210710 12720289 11.57891 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_no.0_13983322_6_6 Chr3 13983322 14376858 overlap Chr3 14254541 14339536 10.95233 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_oy.0_1610574_9_6 Chr4 1610574 1767755 overlap Chr4 1632700 1766113 12.70722 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_oy.0_1610574_9_6 Chr4 1610574 1767755 trans Chr4 135406 135406 8.444715 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_oy.0_1610574_9_6 Chr4 1610574 1767755 trans Chr5 14083595 14088002 7.764183 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_zu.0_112644_22_1 Chr4 112644 126478 cis Chr4 978 107644 67.6771 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_zu.0_112644_22_1 Chr4 112644 126478 cis Chr4 131478 641324 67.6771 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_zu.0_112644_22_1 Chr4 112644 126478 trans Chr4 658436 737506 7.417929 119636 124936 660409 660463 2 0.00350122850123 0 0 1 2 0 0 1 4_zu.0_112644_22_1 Chr4 112644 126478 trans Chr4 746973 747677 6.144528 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_mt.0_4317315_6_4 Chr4 4317315 4574589 cis Chr4 4318261 4574684 64.78163 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_mt.0_4317315_6_4 Chr4 4317315 4574589 trans Chr4 112505 112505 11.73465 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_mt.0_4317315_6_4 Chr4 4317315 4574589 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ws.0_12936289_7_1 Chr3 12936289 12995358 trans Chr4 230370 230370 12.28701 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ws.0_12936289_7_1 Chr3 12936289 12995358 trans Chr4 12215373 13023192 10.01931 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ws.0_12936289_7_1 Chr3 12936289 12995358 trans Chr4 13180789 13223909 6.477759 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_13603936_9_3 Chr3 13603936 13897919 trans Chr1 22880027 24173991 27.15516 13668016 13668278 23751543 23751594 2 0.12962962963 0 0 1 2 0 0 1 3_bur.0_13603936_9_3 Chr3 13603936 13897919 trans Chr1 24177357 24548619 23.62138 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_13603936_9_3 Chr3 13603936 13897919 trans Chr1 24174435 24175168 14.58466 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_8294912_5_3 Chr1 8294912 8392270 trans Chr1 9260438 9470740 64.91081 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_8294912_5_3 Chr1 8294912 8392270 trans Chr1 10644678 10964573 33.38256 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_8294912_5_3 Chr1 8294912 8392270 cis Chr1 8293876 8289912 32.66993 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_8294912_5_3 Chr1 8294912 8392270 cis Chr1 8397270 8395867 32.66993 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_po.0_14238624_5_3 Chr3 14238624 14340660 overlap Chr3 14281250 14284644 12.43783 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_po.0_14238624_5_3 Chr3 14238624 14340660 trans Chr4 423675 423675 6.428767 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_po.0_14238624_5_3 Chr3 14238624 14340660 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_can.0_14287014_7_2 Chr3 14287014 14397434 trans Chr1 9470091 9888158 25.79615 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_can.0_14287014_7_2 Chr3 14287014 14397434 trans Chr1 5885969 6701330 25.56108 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_can.0_14287014_7_2 Chr3 14287014 14397434 trans Chr1 24976528 25068711 12.90767 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_po.0_1559437_6_3 Chr4 1559437 1675273 trans Chr4 1539607 1539607 24.76755 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_po.0_1559437_6_3 Chr4 1559437 1675273 trans Chr4 2844565 3943122 17.30499 1609774 1654927 3516247 3678069 2 0.000658127254394 0 0 1 2 0 0 1 4_po.0_1559437_6_3 Chr4 1559437 1675273 trans Chr4 2489550 2592121 14.91048 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_oy.0_14468102_27_13 Chr3 14468102 14552325 overlap Chr3 14483383 14533787 33.09577 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_oy.0_14468102_27_13 Chr3 14468102 14552325 trans Chr2 1859413 6720491 17.11818 14469466 14551523 1897224 5522383 74 0.0111284015231 0.0 0.0 0.000999000999001 23 0.0 0.0 0.000999000999001 3_oy.0_14468102_27_13 Chr3 14468102 14552325 trans Chr4 4590735 4604348 11.59608 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_sf.2_4314627_5_3 Chr4 4314627 4521571 trans Chr1 15498252 15531855 16.92669 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_sf.2_4314627_5_3 Chr4 4314627 4521571 trans Chr2 40396 40396 15.0998 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_sf.2_4314627_5_3 Chr4 4314627 4521571 trans Chr2 38517 38517 15.08944 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_zu.0_15139096_7_7 Chr1 15139096 15596665 cis Chr1 12001415 15162016 22.78649 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_zu.0_15139096_7_7 Chr1 15139096 15596665 overlap Chr1 15163520 15577747 15.73935 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_zu.0_15139096_7_7 Chr1 15139096 15596665 trans Chr1 15747094 17289110 12.48605 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_16435661_12_2 Chr1 16435661 16485339 cis Chr1 11456833 16430661 88.29102 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_16435661_12_2 Chr1 16435661 16485339 cis Chr1 16490339 22174775 88.29102 16472761 16472812 17536020 17536071 1 0.0416666666667 0 0 1 1 0 0 1 1_bur.0_16435661_12_2 Chr1 16435661 16485339 trans Chr1 9747887 11440812 24.30508 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_16435661_12_2 Chr1 16435661 16485339 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_hi.0_23143596_6_2 Chr1 23143596 23266966 trans Chr1 20423319 20423319 inf inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_hi.0_23143596_6_2 Chr1 23143596 23266966 trans Chr1 20817099 21111946 inf inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_hi.0_23143596_6_2 Chr1 23143596 23266966 trans Chr1 21211757 21353040 178.0533 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_kn.0_9604375_15_6 Chr3 9604375 9688913 overlap Chr3 9613342 9624810 21.39538 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_kn.0_9604375_15_6 Chr3 9604375 9688913 trans Chr1 7179863 7180305 8.131083 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_kn.0_9604375_15_6 Chr3 9604375 9688913 trans Chr1 10623174 10761043 6.623563 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_bur.0_16616187_16_1 Chr2 16616187 16708427 cis Chr2 13877562 16611187 65.88904 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_bur.0_16616187_16_1 Chr2 16616187 16708427 cis Chr2 16713427 19634846 65.88904 16685268 16685319 17289555 17289606 1 0.0769230769231 0 0 1 1 0 0 1 2_bur.0_16616187_16_1 Chr2 16616187 16708427 trans Chr2 12548359 13876707 12.13377 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_bur.0_16616187_16_1 Chr2 16616187 16708427 trans Chr2 10335054 11939474 10.45609 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_can.0_4442401_8_7 Chr4 4442401 4537378 trans Chr4 2816356 3943122 22.17871 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_can.0_4442401_8_7 Chr4 4442401 4537378 trans Chr1 5885969 6591705 10.08234 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_can.0_4442401_8_7 Chr4 4442401 4537378 trans Chr1 22028410 22083094 9.609781 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_989755_7_4 Chr3 989755 1052691 cis Chr3 1033674 1056029 71.36787 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_989755_7_4 Chr3 989755 1052691 trans Chr4 198469 198533 11.08292 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_989755_7_4 Chr3 989755 1052691 trans Chr4 201432 201432 11.08292 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_17992357_12_9 Chr4 17992357 18213300 cis Chr4 16769443 17987357 39.3055 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_17992357_12_9 Chr4 17992357 18213300 cis Chr4 18218300 18519040 39.3055 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_17992357_12_9 Chr4 17992357 18213300 trans Chr4 12147716 16645889 11.85598 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_17992357_12_9 Chr4 17992357 18213300 trans Chr2 12329618 13368725 9.85001 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ct.1_14520257_7_4 Chr3 14520257 14670946 trans Chr5 3715046 3715046 11.45096 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ct.1_14520257_7_4 Chr3 14520257 14670946 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ct.1_14520257_7_4 Chr3 14520257 14670946 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_14454399_36_12 Chr3 14454399 14552351 overlap Chr3 14471552 14532767 19.21823 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_14454399_36_12 Chr3 14454399 14552351 trans Chr4 1324082 1380038 7.256574 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_14454399_36_12 Chr3 14454399 14552351 overlap Chr3 14534635 14534635 6.953823 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_17443107_6_4 Chr4 17443107 17539763 trans Chr4 16440869 16632369 64.43763 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_17443107_6_4 Chr4 17443107 17539763 trans Chr4 9160040 9188805 41.35142 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_17443107_6_4 Chr4 17443107 17539763 trans Chr4 17688113 17795051 34.22627 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_can.0_1261_5_1 Chr4 1261 125853 trans Chr4 126423 7370796 163.0643 69094 124935 660404 5076434 4 0.00293641311562 0 0 1 2 0 0 1 4_can.0_1261_5_1 Chr4 1261 125853 cis Chr4 978 -3739 111.0341 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_can.0_1261_5_1 Chr4 1261 125853 cis Chr4 130853 125866 111.0341 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_can.0_1261_5_1 Chr4 1261 125853 trans Chr4 7373222 9833199 13.06664 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_4572469_13_1 Chr4 4572469 4715788 overlap Chr4 4626755 4635918 47.30492 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_4572469_13_1 Chr4 4572469 4715788 overlap Chr4 4636605 4637056 10.32206 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_4572469_13_1 Chr4 4572469 4715788 overlap Chr4 4625885 4625885 6.717666 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_wil.2_12662086_12_6 Chr3 12662086 12766290 trans Chr4 978 4315339 20.39977 12702219 12746900 1245100 3433541 2 0.00139101549321 0 0 1 2 0 0 1 3_wil.2_12662086_12_6 Chr3 12662086 12766290 trans Chr4 4766203 5923592 18.4891 12670268 12760542 5205036 5398039 2 0.00059136218832 0 0 1 2 0 0 1 3_wil.2_12662086_12_6 Chr3 12662086 12766290 trans Chr1 9470474 9888158 15.46631 12729479 12729530 9708166 9708217 1 0.0454545454545 0 0 1 1 0 0 1 3_ler.0_21693981_10_8 Chr3 21693981 21874301 trans Chr3 18085787 19850282 48.83033 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ler.0_21693981_10_8 Chr3 21693981 21874301 trans Chr3 20223904 21683372 47.19933 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ler.0_21693981_10_8 Chr3 21693981 21874301 trans Chr3 22467222 23371191 27.90511 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_oy.0_1261203_10_10 Chr2 1261203 1461134 cis Chr2 41625 1275313 33.02097 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_oy.0_1261203_10_10 Chr2 1261203 1461134 cis Chr2 1276312 2722935 29.33494 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_oy.0_1261203_10_10 Chr2 1261203 1461134 trans Chr2 3217892 4400712 21.13033 1328862 1437543 3790148 4323898 3 0.000485331168606 0 0 1 2 0 0 1 4_rsch.4_4320322_5_5 Chr4 4320322 4606054 trans Chr3 13214119 13896469 24.3027 4528404 4528455 13436718 13436769 1 0.2 0 0 1 1 0 0 1 4_rsch.4_4320322_5_5 Chr4 4320322 4606054 trans Chr5 26729078 26824976 15.52878 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_4320322_5_5 Chr4 4320322 4606054 overlap Chr4 4343797 4546341 12.43783 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_zu.0_4326473_8_7 Chr4 4326473 4524294 overlap Chr4 4336307 4523239 68.26086 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_zu.0_4326473_8_7 Chr4 4326473 4524294 trans Chr5 13881985 14068089 9.76217 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_zu.0_4326473_8_7 Chr4 4326473 4524294 trans Chr5 15115571 15836646 8.325749 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_po.0_9436685_6_1 Chr4 9436685 9545976 trans Chr4 8951841 9429081 163.0643 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_po.0_9436685_6_1 Chr4 9436685 9545976 trans Chr4 9568188 10581983 163.0643 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_po.0_9436685_6_1 Chr4 9436685 9545976 overlap Chr4 9437289 9482452 110.1161 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_rsch.4_14251151_21_18 Chr3 14251151 14374252 cis Chr3 9626328 14354667 78.25771 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_rsch.4_14251151_21_18 Chr3 14251151 14374252 trans Chr3 14535040 18211067 59.19318 14255621 14374283 14571171 17071065 10 0.000526892915597 0.0 0.0 0.000999000999001 9 0.0 0.0 0.000999000999001 3_rsch.4_14251151_21_18 Chr3 14251151 14374252 trans Chr3 18297192 18515096 11.14143 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ws.0_15183823_5_3 Chr3 15183823 15390093 trans Chr3 15390664 17389075 11.62843 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ws.0_15183823_5_3 Chr3 15183823 15390093 overlap Chr3 15278532 15384989 10.89223 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_ws.0_15183823_5_3 Chr3 15183823 15390093 trans Chr3 13983322 14244391 8.375553 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_can.0_6110834_10_9 Chr2 6110834 6178199 cis Chr2 979210 6105834 54.81278 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_can.0_6110834_10_9 Chr2 6110834 6178199 cis Chr2 6183199 6393521 54.81278 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_can.0_6110834_10_9 Chr2 6110834 6178199 trans Chr2 6870655 7270343 8.727507 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_can.0_6110834_10_9 Chr2 6110834 6178199 trans Chr2 8800897 8982552 8.680485 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_hi.0_10991944_9_2 Chr4 10991944 11120845 trans Chr4 11147720 12080107 13.67114 11009628 11009692 11290902 11291030 2 0.0833333333333 0 0 1 2 0 0 1 4_hi.0_10991944_9_2 Chr4 10991944 11120845 trans Chr4 4256710 4260063 9.901094 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_hi.0_10991944_9_2 Chr4 10991944 11120845 trans Chr1 21721969 21722055 9.806877 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_no.0_19304889_7_6 Chr5 19304889 19527739 trans Chr5 19540348 20675932 49.26702 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_no.0_19304889_7_6 Chr5 19304889 19527739 trans Chr5 17758818 18912315 39.67717 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_no.0_19304889_7_6 Chr5 19304889 19527739 trans Chr5 16917527 17386362 19.20182 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_4317176_7_7 Chr4 4317176 4630173 overlap Chr4 4354304 4588658 16.66339 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_4317176_7_7 Chr4 4317176 4630173 trans Chr3 7179499 7465130 11.00125 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_4317176_7_7 Chr4 4317176 4630173 trans Chr4 183883 183883 9.09628 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_12118940_6_5 Chr4 12118940 12132145 cis Chr4 12126896 13527729 64.78163 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_12118940_6_5 Chr4 12118940 12132145 trans Chr4 9160040 9311228 60.16493 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_12118940_6_5 Chr4 12118940 12132145 trans Chr4 9583133 10304965 38.97159 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_tsu.0_4589114_7_5 Chr4 4589114 4768822 trans Chr4 4256710 4260063 13.68109 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_tsu.0_4589114_7_5 Chr4 4589114 4768822 overlap Chr4 4642866 4753564 7.021662 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_tsu.0_4589114_7_5 Chr4 4589114 4768822 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_edi.0_23129353_6_3 Chr5 23129353 23191767 trans Chr5 23806433 23921285 16.7475 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_edi.0_23129353_6_3 Chr5 23129353 23191767 trans Chr5 23992015 24438575 7.842322 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_edi.0_23129353_6_3 Chr5 23129353 23191767 overlap Chr5 23166782 23166782 6.418765 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_oy.0_14478392_7_4 Chr3 14478392 14650995 trans Chr4 182432 182432 9.577939 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_oy.0_14478392_7_4 Chr3 14478392 14650995 trans Chr4 194935 194935 9.57708 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_oy.0_14478392_7_4 Chr3 14478392 14650995 trans Chr1 22028410 22083094 9.089799 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_2381890_8_4 Chr4 2381890 2417405 trans Chr4 1390215 1673734 41.28766 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_2381890_8_4 Chr4 2381890 2417405 trans Chr4 2481859 2782540 41.28766 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_2381890_8_4 Chr4 2381890 2417405 trans Chr4 506463 1037911 25.67589 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_hi.0_2321934_8_8 Chr2 2321934 2603683 trans Chr2 3651495 4497334 41.28766 2364791 2386937 3725117 3802383 2 0.00100806451613 0 0 1 1 0 0 1 2_hi.0_2321934_8_8 Chr2 2321934 2603683 trans Chr2 6432547 6869707 36.69188 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_hi.0_2321934_8_8 Chr2 2321934 2603683 trans Chr2 5612450 5904062 28.69325 2580982 2581103 5875923 5876026 3 0.114583333333 0 0 1 3 0 0 1 4_tsu.0_2189638_19_18 Chr4 2189638 2417405 cis Chr4 978 2184638 124.2406 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_tsu.0_2189638_19_18 Chr4 2189638 2417405 cis Chr4 2422405 4366142 124.2406 2271732 2342319 2582471 4359439 7 0.000555058825324 0.0 0.0 0.000999000999001 4 0.0 0.0 0.000999000999001 4_tsu.0_2189638_19_18 Chr4 2189638 2417405 trans Chr4 4552106 7081267 83.93648 2221854 2348873 4990941 6702131 17 0.00103361742746 0.0 0.0 0.000999000999001 11 0.0 0.0 0.000999000999001 4_tsu.0_2189638_19_18 Chr4 2189638 2417405 trans Chr2 52361 56315 19.40934 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_rsch.4_13957881_6_5 Chr3 13957881 14104247 trans Chr1 22028410 22083094 15.32868 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_rsch.4_13957881_6_5 Chr3 13957881 14104247 trans Chr4 3040818 3943122 13.66753 13978130 14054576 3135842 3920125 8 0.0049318627907 0.0 0.0 0.000999000999001 5 0.0 0.0 0.000999000999001 3_rsch.4_13957881_6_5 Chr3 13957881 14104247 trans Chr1 5885969 6591705 12.7295 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_11285195_5_2 Chr4 11285195 11481356 trans Chr4 10660879 10935436 90.61719 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_11285195_5_2 Chr4 11285195 11481356 trans Chr4 12005013 12709137 55.83393 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_11285195_5_2 Chr4 11285195 11481356 trans Chr4 12820770 13520994 55.83393 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ler.0_4354425_5_1 Chr4 4354425 4587621 trans Chr4 1258086 1380038 17.11145 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ler.0_4354425_5_1 Chr4 4354425 4587621 overlap Chr4 4366004 4492751 8.519481 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_ler.0_4354425_5_1 Chr4 4354425 4587621 trans Chr2 17903159 18477173 7.095295 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_hi.0_10018836_10_4 Chr5 10018836 10089502 trans Chr1 103963 103963 8.162233 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_hi.0_10018836_10_4 Chr5 10018836 10089502 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_hi.0_10018836_10_4 Chr5 10018836 10089502 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_ct.1_24175755_33_1 Chr1 24175755 24241560 cis Chr1 24172029 24182275 70.42499 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_ct.1_24175755_33_1 Chr1 24175755 24241560 cis Chr1 24183845 24386813 8.104223 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_ct.1_24175755_33_1 Chr1 24175755 24241560 trans Chr1 23785350 24168546 7.481409 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_zu.0_14049701_6_6 Chr5 14049701 14280443 cis Chr5 14068162 16303411 178.0533 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_zu.0_14049701_6_6 Chr5 14049701 14280443 trans Chr5 13144241 14048730 49.71048 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_zu.0_14049701_6_6 Chr5 14049701 14280443 trans Chr5 9525823 11092793 20.3056 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_sf.2_26248032_8_2 Chr1 26248032 26354690 cis Chr1 26257812 26739202 61.83931 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_sf.2_26248032_8_2 Chr1 26248032 26354690 trans Chr1 26802173 26883247 31.20064 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_sf.2_26248032_8_2 Chr1 26248032 26354690 trans Chr1 26957141 28148140 25.34849 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_oy.0_12891503_5_5 Chr5 12891503 13209090 trans Chr4 10398635 10423768 18.59068 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_oy.0_12891503_5_5 Chr5 12891503 13209090 trans Chr5 3715046 3715046 15.42368 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_oy.0_12891503_5_5 Chr5 12891503 13209090 trans Chr4 10608134 10608134 8.079137 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_rsch.4_15490632_7_7 Chr1 15490632 15733325 trans Chr1 14177684 14191807 14.28729 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_rsch.4_15490632_7_7 Chr1 15490632 15733325 trans Chr5 20808019 20808987 11.33776 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_rsch.4_15490632_7_7 Chr1 15490632 15733325 trans Chr4 3040818 3943122 9.984462 15534248 15730442 3151460 3813354 2 0.000339357829663 0 0 1 2 0 0 1 3_ct.1_9304970_9_4 Chr3 9304970 9615220 overlap Chr3 9305016 9613527 39.16023 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_ct.1_9304970_9_4 Chr3 9304970 9615220 trans Chr3 9625363 13664926 36.37747 9362211 9607725 9625554 13132436 4 0.000270309604965 0 0 1 4 0 0 1 3_ct.1_9304970_9_4 Chr3 9304970 9615220 trans Chr3 8257828 9301331 15.51664 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_kn.0_17161261_7_5 Chr4 17161261 17289183 trans Chr4 16441543 16695895 50.07787 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_kn.0_17161261_7_5 Chr4 17161261 17289183 trans Chr4 17722075 17795051 22.25561 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_kn.0_17161261_7_5 Chr4 17161261 17289183 trans Chr4 10562770 10581752 16.82292 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_mt.0_19850543_12_1 Chr3 19850543 19991329 trans Chr3 16867032 19702752 237.9534 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_mt.0_19850543_12_1 Chr3 19850543 19991329 cis Chr3 19963316 22140656 235.109 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_mt.0_19850543_12_1 Chr3 19850543 19991329 cis Chr3 19843816 19953383 233.5062 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ws.0_17268185_6_4 Chr3 17268185 17506367 trans Chr3 17538858 19407929 22.22254 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ws.0_17268185_6_4 Chr3 17268185 17506367 trans Chr3 13312990 13605404 20.60079 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ws.0_17268185_6_4 Chr3 17268185 17506367 trans Chr3 14539566 17251087 20.60079 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_1317096_7_5 Chr4 1317096 1508831 cis Chr4 1458786 1559318 17.51247 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_1317096_7_5 Chr4 1317096 1508831 trans Chr4 2489583 2610207 17.49038 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_1317096_7_5 Chr4 1317096 1508831 trans Chr4 1633050 1635264 17.00328 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_mt.0_58_5_1 Chr5 58 492291 trans Chr5 23992015 26028925 17.53372 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_mt.0_58_5_1 Chr5 58 492291 trans Chr5 26729078 26824976 15.74269 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_mt.0_58_5_1 Chr5 58 492291 trans Chr5 23875681 23921285 6.763163 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_hi.0_4504316_16_12 Chr4 4504316 4614412 trans Chr2 1827628 6716612 18.13895 4505713 4613845 2330540 5985517 11 0.00124437708384 0.0 0.0 0.000999000999001 8 0.0 0.0 0.000999000999001 4_hi.0_4504316_16_12 Chr4 4504316 4614412 overlap Chr4 4595758 4604109 17.94437 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_hi.0_4504316_16_12 Chr4 4504316 4614412 overlap Chr4 4604402 4604464 14.20824 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_13922826_6_1 Chr3 13922826 13982789 trans Chr4 3035 3035 13.04365 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_13922826_6_1 Chr3 13922826 13982789 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_13922826_6_1 Chr3 13922826 13982789 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_edi.0_8528202_8_6 Chr2 8528202 8802307 trans Chr2 6789885 8441304 25.637 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_edi.0_8528202_8_6 Chr2 8528202 8802307 cis Chr2 8800897 9669771 24.65399 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_edi.0_8528202_8_6 Chr2 8528202 8802307 trans Chr2 5005992 5694689 16.13482 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_1250605_9_8 Chr4 1250605 1460599 cis Chr4 733972 1245605 102.0384 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_1250605_9_8 Chr4 1250605 1460599 cis Chr4 1465599 1675614 102.0384 1311049 1318699 1473167 1478895 5 0.0188054721388 0.0 0.0 0.000999000999001 3 0.0 0.0 0.000999000999001 4_rsch.4_1250605_9_8 Chr4 1250605 1460599 trans Chr4 4766445 5771487 23.83966 1342266 1342317 5650348 5650399 1 0.111111111111 0 0 1 1 0 0 1 4_rsch.4_1250605_9_8 Chr4 1250605 1460599 trans Chr4 2482271 2983457 23.32279 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_oy.0_15555544_6_1 Chr3 15555544 15563493 trans Chr4 121237 121344 11.48978 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_oy.0_15555544_6_1 Chr3 15555544 15563493 trans Chr4 123214 123214 11.48978 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_oy.0_15555544_6_1 Chr3 15555544 15563493 trans Chr4 123603 124737 11.48978 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ct.1_14245427_8_8 Chr3 14245427 14295471 trans Chr3 11281521 13205067 20.11377 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ct.1_14245427_8_8 Chr3 14245427 14295471 trans Chr3 14044834 14245291 18.721 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ct.1_14245427_8_8 Chr3 14245427 14295471 trans Chr3 13213030 13649428 18.46473 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_wil.2_13895992_9_3 Chr3 13895992 14039100 trans Chr1 5885969 6701330 18.47047 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_wil.2_13895992_9_3 Chr3 13895992 14039100 trans Chr1 8352744 9115133 9.724237 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_wil.2_13895992_9_3 Chr3 13895992 14039100 trans Chr1 9602848 9888158 8.849545 13959724 13959788 9657526 9657580 2 0.166666666667 0 0 1 2 0 0 1 5_can.0_6433995_9_7 Chr5 6433995 6438560 overlap Chr5 6437439 6438114 29.48279 0 0 0 0 0 0 0 inf 1 0 0 inf 1 5_can.0_6433995_9_7 Chr5 6433995 6438560 trans Chr1 66902 66902 7.800072 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_can.0_6433995_9_7 Chr5 6433995 6438560 trans Chr3 19995870 19995870 7.229059 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_ws.0_26135582_15_15 Chr1 26135582 26284496 cis Chr1 24803965 26130582 257.8615 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_ws.0_26135582_15_15 Chr1 26135582 26284496 cis Chr1 26289496 29266364 257.8615 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_ws.0_26135582_15_15 Chr1 26135582 26284496 trans Chr1 24303815 24699228 27.37494 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_ws.0_26135582_15_15 Chr1 26135582 26284496 trans Chr1 23483343 23753847 14.20566 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_tsu.0_4316122_6_5 Chr4 4316122 4628824 overlap Chr4 4319340 4359509 16.62301 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_tsu.0_4316122_6_5 Chr4 4316122 4628824 trans Chr4 118032 118032 13.17744 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_tsu.0_4316122_6_5 Chr4 4316122 4628824 trans Chr4 133129 133129 12.60975 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_zu.0_10161502_5_3 Chr4 10161502 10274214 trans Chr4 10304987 10581983 163.0643 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_zu.0_10161502_5_3 Chr4 10161502 10274214 trans Chr4 10665469 10908862 110.1161 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_zu.0_10161502_5_3 Chr4 10161502 10274214 trans Chr4 8951841 9427899 82.11384 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_no.0_16609305_6_4 Chr4 16609305 16709282 cis Chr4 16248891 16696603 78.22716 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_no.0_16609305_6_4 Chr4 16609305 16709282 trans Chr4 9160040 9175236 31.61256 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_no.0_16609305_6_4 Chr4 16609305 16709282 trans Chr4 17688113 17795051 25.77503 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_mt.0_15013763_5_2 Chr5 15013763 15256184 cis Chr5 15249569 15756683 16.65774 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_mt.0_15013763_5_2 Chr5 15013763 15256184 trans Chr5 14542933 14647827 14.83578 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_mt.0_15013763_5_2 Chr5 15013763 15256184 trans Chr5 14910355 15012139 9.604972 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_sf.2_26921629_26_7 Chr1 26921629 26923228 cis Chr1 24181436 26916629 180.5699 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_sf.2_26921629_26_7 Chr1 26921629 26923228 cis Chr1 26928228 30393001 180.5699 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_sf.2_26921629_26_7 Chr1 26921629 26923228 trans Chr1 23653574 24172153 9.019642 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_sf.2_26921629_26_7 Chr1 26921629 26923228 trans Chr1 22477992 22627566 7.112926 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ws.0_12786168_6_6 Chr3 12786168 12995250 trans Chr3 14539971 15722825 14.67307 12815894 12815945 15508840 15508891 1 0.166666666667 0 0 1 1 0 0 1 3_ws.0_12786168_6_6 Chr3 12786168 12995250 cis Chr3 12982602 13656133 12.99425 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ws.0_12786168_6_6 Chr3 12786168 12995250 overlap Chr3 12813180 12969679 12.25746 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_sf.2_1025_13_6 Chr4 1025 126052 cis Chr4 978 -3975 101.1984 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_sf.2_1025_13_6 Chr4 1025 126052 cis Chr4 131052 126057 101.1984 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_sf.2_1025_13_6 Chr4 1025 126052 trans Chr4 130641 1463256 24.5996 119636 119687 660412 660463 1 0.025641025641 0 0 1 1 0 0 1 4_sf.2_1025_13_6 Chr4 1025 126052 trans Chr4 128432 128489 10.21882 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_sf.2_8827998_5_1 Chr4 8827998 8852215 trans Chr4 8861005 9480998 30.4098 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_sf.2_8827998_5_1 Chr4 8827998 8852215 trans Chr4 9578308 9580708 22.41468 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_sf.2_8827998_5_1 Chr4 8827998 8852215 cis Chr4 8851559 8859305 17.09868 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ler.0_4489862_10_5 Chr4 4489862 4587621 overlap Chr4 4523244 4571011 8.683446 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_ler.0_4489862_10_5 Chr4 4489862 4587621 trans Chr4 11766028 11766028 8.254649 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ler.0_4489862_10_5 Chr4 4489862 4587621 trans Chr3 21866749 21873661 7.298414 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_edi.0_1429685_14_7 Chr3 1429685 1456264 cis Chr3 98 1424685 50.75274 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_edi.0_1429685_14_7 Chr3 1429685 1456264 cis Chr3 1461264 7911530 50.75274 1447460 1447511 1549686 1549737 1 0.0714285714286 0 0 1 1 0 0 1 3_edi.0_1429685_14_7 Chr3 1429685 1456264 trans Chr3 8198146 8714889 9.735919 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_edi.0_1429685_14_7 Chr3 1429685 1456264 trans Chr3 7944702 7997918 7.145382 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_no.0_15651990_14_12 Chr1 15651990 15758689 overlap Chr1 15662233 15747940 18.43229 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_no.0_15651990_14_12 Chr1 15651990 15758689 trans Chr2 5511144 8528873 17.9758 15689887 15689938 6168844 6168895 1 0.0714285714286 0 0 1 1 0 0 1 1_no.0_15651990_14_12 Chr1 15651990 15758689 trans Chr2 8983613 9566083 10.53614 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_2393103_22_8 Chr4 2393103 2495982 cis Chr4 978 2388103 143.0829 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_2393103_22_8 Chr4 2393103 2495982 cis Chr4 2500982 7081255 143.0829 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_2393103_22_8 Chr4 2393103 2495982 trans Chr4 7081793 7143890 11.45939 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wu.0_2393103_22_8 Chr4 2393103 2495982 trans Chr2 52366 55486 9.758598 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_mt.0_16880273_8_7 Chr4 16880273 17184537 trans Chr4 16243397 16695895 89.25879 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_mt.0_16880273_8_7 Chr4 16880273 17184537 trans Chr4 8981887 9167398 37.56215 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_mt.0_16880273_8_7 Chr4 16880273 17184537 trans Chr4 10486852 10582473 31.13486 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_oy.0_14177684_6_4 Chr1 14177684 14509726 cis Chr1 13918674 14178039 12.93534 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_oy.0_14177684_6_4 Chr1 14177684 14509726 trans Chr1 14509788 14919153 9.141348 14487276 14507718 14509806 14509879 3 0.0016081871345 0 0 1 2 0 0 1 1_oy.0_14177684_6_4 Chr1 14177684 14509726 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_no.0_17529117_7_2 Chr4 17529117 17686936 cis Chr4 17560341 18314303 77.60595 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_no.0_17529117_7_2 Chr4 17529117 17686936 trans Chr4 16440869 16626584 37.91609 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_no.0_17529117_7_2 Chr4 17529117 17686936 trans Chr4 18315540 18519040 34.43566 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_rsch.4_13916522_5_5 Chr3 13916522 13983577 overlap Chr3 13922732 13982144 18.24918 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_rsch.4_13916522_5_5 Chr3 13916522 13983577 trans Chr5 23806433 23872444 15.52477 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_rsch.4_13916522_5_5 Chr3 13916522 13983577 trans Chr5 15107407 15115712 9.487856 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_hi.0_10962048_7_6 Chr4 10962048 11256412 trans Chr4 13520344 13527729 18.51824 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_hi.0_10962048_7_6 Chr4 10962048 11256412 trans Chr4 10905069 10935436 16.70729 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_hi.0_10962048_7_6 Chr4 10962048 11256412 trans Chr4 10660879 10692969 15.89452 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_mt.0_4315580_5_2 Chr4 4315580 4358153 overlap Chr4 4315580 4319421 28.4884 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_mt.0_4315580_5_2 Chr4 4315580 4358153 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_mt.0_4315580_5_2 Chr4 4315580 4358153 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_14329739_6_1 Chr3 14329739 14399230 trans Chr4 284713 284713 26.21608 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_14329739_6_1 Chr3 14329739 14399230 trans Chr1 22028410 22083094 25.43724 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_hi.0_14329739_6_1 Chr3 14329739 14399230 trans Chr4 194935 194935 24.11133 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_18962190_10_4 Chr1 18962190 19049695 cis Chr1 18309921 19049234 19.44516 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_18962190_10_4 Chr1 18962190 19049695 trans Chr1 19050522 21038305 11.98491 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_bur.0_18962190_10_4 Chr1 18962190 19049695 trans Chr4 8634469 8645372 9.963048 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_bur.0_1383644_16_6 Chr2 1383644 1392752 cis Chr2 627041 1378644 92.75768 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_bur.0_1383644_16_6 Chr2 1383644 1392752 cis Chr2 1397752 1618413 92.75768 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_bur.0_1383644_16_6 Chr2 1383644 1392752 trans Chr4 16632369 16632369 8.646579 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_bur.0_1383644_16_6 Chr2 1383644 1392752 trans Chr2 1934180 2069878 6.964311 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_col.0_16242819_9_4 Chr4 16242819 16437816 cis Chr4 16243312 16632369 42.51406 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_col.0_16242819_9_4 Chr4 16242819 16437816 trans Chr4 11769243 12700250 34.76538 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_col.0_16242819_9_4 Chr4 16242819 16437816 trans Chr4 8981887 9167398 31.6435 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_tsu.0_10018836_16_9 Chr5 10018836 10087202 overlap Chr5 10028302 10077106 25.968 0 0 0 0 0 0 0 inf 1 0 0 inf 1 5_tsu.0_10018836_16_9 Chr5 10018836 10087202 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_tsu.0_10018836_16_9 Chr5 10018836 10087202 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_po.0_9879_28_7 Chr2 9879 72727 cis Chr2 1173 68063 60.62478 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_po.0_9879_28_7 Chr2 9879 72727 trans Chr4 506463 6714903 56.61946 10053 72734 2995538 6265244 17 0.000480285115687 0.0 0.0 0.000999000999001 14 0.0 0.0 0.000999000999001 2_po.0_9879_28_7 Chr2 9879 72727 trans Chr4 6728727 7230125 13.16701 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ct.1_4591718_13_7 Chr4 4591718 4763745 overlap Chr4 4598000 4763106 47.61895 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_ct.1_4591718_13_7 Chr4 4591718 4763745 trans Chr4 4768520 6721900 25.50046 4623826 4745183 4854354 6062547 11 0.0019123675226 0.0 0.0 0.000999000999001 8 0.0 0.0 0.000999000999001 4_ct.1_4591718_13_7 Chr4 4591718 4763745 trans Chr4 1270812 4234878 18.69816 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_wu.0_7070580_8_4 Chr3 7070580 7515806 cis Chr3 3158146 7065580 94.43777 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_wu.0_7070580_8_4 Chr3 7070580 7515806 cis Chr3 7520806 9613352 94.43777 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_wu.0_7070580_8_4 Chr3 7070580 7515806 trans Chr3 2167372 3125562 56.98447 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_wu.0_7070580_8_4 Chr3 7070580 7515806 trans Chr3 911574 1714475 15.17922 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_po.0_8409069_87_8 Chr5 8409069 8488878 overlap Chr5 8439267 8451240 120.4531 0 0 0 0 0 0 0 inf 1 0 0 inf 1 5_po.0_8409069_87_8 Chr5 8409069 8488878 trans Chr1 11147801 18962754 49.2317 8410840 8486761 11472729 18628195 49 0.000683542461969 0.0 0.0 0.000999000999001 39 0.0 0.0 0.000999000999001 5_po.0_8409069_87_8 Chr5 8409069 8488878 trans Chr1 10930436 11146675 7.675546 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_wil.2_12676086_5_2 Chr3 12676086 12829730 trans Chr4 4506539 4763177 12.43783 12793353 12793404 4617688 4617739 1 0.1 0 0 1 1 0 0 1 3_wil.2_12676086_5_2 Chr3 12676086 12829730 trans Chr4 157532 157532 10.7925 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_wil.2_12676086_5_2 Chr3 12676086 12829730 trans Chr4 523764 1613705 8.519481 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_can.0_23019131_20_2 Chr3 23019131 23019491 cis Chr3 19826026 23014131 60.83889 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_can.0_23019131_20_2 Chr3 23019131 23019491 cis Chr3 23024491 23371191 60.83889 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_can.0_23019131_20_2 Chr3 23019131 23019491 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_can.0_23019131_20_2 Chr3 23019131 23019491 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_tsu.0_4570950_13_5 Chr4 4570950 4642805 trans Chr4 8674620 10599945 10.69544 4633760 4633811 9404143 9404194 1 0.0769230769231 0 0 1 1 0 0 1 4_tsu.0_4570950_13_5 Chr4 4570950 4642805 overlap Chr4 4633681 4633834 9.016178 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_tsu.0_4570950_13_5 Chr4 4570950 4642805 trans Chr4 10621629 10621630 6.032535 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_zu.0_7810200_6_1 Chr1 7810200 7902702 trans Chr1 9260438 9470740 48.09054 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_zu.0_7810200_6_1 Chr1 7810200 7902702 trans Chr1 7179863 7431878 40.07649 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_zu.0_7810200_6_1 Chr1 7810200 7902702 overlap Chr1 7812004 7884910 29.08446 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_kn.0_4631149_8_3 Chr4 4631149 4763633 overlap Chr4 4631926 4739990 44.4499 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_kn.0_4631149_8_3 Chr4 4631149 4763633 trans Chr4 4617774 4617774 9.285461 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_kn.0_4631149_8_3 Chr4 4631149 4763633 trans Chr4 4614374 4615654 7.112728 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_tsu.0_16077820_6_6 Chr1 16077820 16166224 trans Chr1 23731116 23753847 13.12268 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_tsu.0_16077820_6_6 Chr1 16077820 16166224 trans Chr1 24699228 24699228 13.01056 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_tsu.0_16077820_6_6 Chr1 16077820 16166224 trans Chr5 124075 124157 11.51762 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_4528569_6_6 Chr4 4528569 4760256 trans Chr4 127234 128493 12.98162 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_4528569_6_6 Chr4 4528569 4760256 trans Chr5 3715046 3715046 12.59489 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_4528569_6_6 Chr4 4528569 4760256 trans Chr4 1008597 1009588 11.30997 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_ws.0_18138395_6_1 Chr5 18138395 18160611 trans Chr5 17457640 17645029 28.51936 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_ws.0_18138395_6_1 Chr5 18138395 18160611 trans Chr5 17097208 17391919 24.05314 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_ws.0_18138395_6_1 Chr5 18138395 18160611 cis Chr5 17758860 18153821 24.05314 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_14328742_29_17 Chr3 14328742 14540187 overlap Chr3 14340229 14524563 49.23725 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_14328742_29_17 Chr3 14328742 14540187 trans Chr4 713659 713710 7.001989 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_14328742_29_17 Chr3 14328742 14540187 overlap Chr3 14528325 14528325 6.016574 0 0 0 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_1743851_6_3 Chr4 1743851 1818936 trans Chr1 22028410 22083094 16.43558 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_1743851_6_3 Chr4 1743851 1818936 trans Chr4 182432 182432 15.93819 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_1743851_6_3 Chr4 1743851 1818936 trans Chr4 194935 194935 15.89717 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ws.0_13099973_7_4 Chr3 13099973 13163998 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ws.0_13099973_7_4 Chr3 13099973 13163998 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_ws.0_13099973_7_4 Chr3 13099973 13163998 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_can.0_15669591_9_4 Chr1 15669591 15813457 overlap Chr1 15727924 15758382 22.74465 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_can.0_15669591_9_4 Chr1 15669591 15813457 trans Chr4 11308676 11309961 8.901603 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_can.0_15669591_9_4 Chr1 15669591 15813457 trans Chr4 8951841 8951841 7.856964 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_9482113_5_2 Chr4 9482113 9585552 cis Chr4 9175452 9545838 81.97975 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_9482113_5_2 Chr4 9482113 9585552 cis Chr4 9581005 10139155 24.3027 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_rsch.4_9482113_5_2 Chr4 9482113 9585552 trans Chr4 8756234 8920602 21.11758 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_kn.0_714731_18_7 Chr4 714731 823210 cis Chr4 978 709731 68.49217 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_kn.0_714731_18_7 Chr4 714731 823210 cis Chr4 828210 1252957 68.49217 754101 760096 839622 962429 3 0.0025382025382 0 0 1 2 0 0 1 4_kn.0_714731_18_7 Chr4 714731 823210 trans Chr4 1391168 1675607 38.83524 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_kn.0_714731_18_7 Chr4 714731 823210 trans Chr4 2419084 2782540 33.98751 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_tsu.0_18876821_18_13 Chr5 18876821 19304459 cis Chr5 15990823 18871821 127.1076 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_tsu.0_18876821_18_13 Chr5 18876821 19304459 cis Chr5 19309459 19304889 127.1076 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_tsu.0_18876821_18_13 Chr5 18876821 19304459 trans Chr5 19306171 22084990 93.52445 18891418 19286222 20089779 21058310 5 0.000115006579402 0.0 0.0 0.000999000999001 5 0.0 0.0 0.000999000999001 5_tsu.0_18876821_18_13 Chr5 18876821 19304459 trans Chr5 15098513 15099450 11.98979 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_kn.0_13915833_6_6 Chr3 13915833 14046406 trans Chr3 852840 852840 17.84744 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_kn.0_13915833_6_6 Chr3 13915833 14046406 trans Chr3 22112180 22112935 13.90915 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_kn.0_13915833_6_6 Chr3 13915833 14046406 trans Chr4 16185198 16252425 13.40448 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_3961589_9_3 Chr3 3961589 4046063 cis Chr3 3153995 3956589 212.6443 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_3961589_9_3 Chr3 3961589 4046063 cis Chr3 4051063 7062557 212.6443 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_3961589_9_3 Chr3 3961589 4046063 trans Chr3 2094650 3122126 122.36 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_bur.0_3961589_9_3 Chr3 3961589 4046063 trans Chr3 98 1714475 50.82305 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ws.0_4312245_5_1 Chr4 4312245 4406616 trans Chr5 20808019 20808987 16.0875 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ws.0_4312245_5_1 Chr4 4312245 4406616 trans Chr1 22028410 22083094 15.63911 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ws.0_4312245_5_1 Chr4 4312245 4406616 trans Chr4 284713 284713 14.9022 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_sf.2_13103368_9_2 Chr3 13103368 13171764 overlap Chr3 13105122 13107388 16.4449 0 0 0 0 0 0 0 inf 1 0 0 inf 1 3_sf.2_13103368_9_2 Chr3 13103368 13171764 trans Chr4 227851 227851 7.671656 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_sf.2_13103368_9_2 Chr3 13103368 13171764 trans Chr1 5885969 6591705 7.557401 13105149 13108634 6009836 6013691 5 0.0435621542724 0.0 0.0 0.000999000999001 5 0.0 0.0 0.000999000999001 2_rsch.4_6870655_6_3 Chr2 6870655 7043850 cis Chr2 7042130 7504628 28.51936 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_rsch.4_6870655_6_3 Chr2 6870655 7043850 trans Chr2 6470247 6795311 27.71184 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_rsch.4_6870655_6_3 Chr2 6870655 7043850 trans Chr2 7690586 7976098 18.43993 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_po.0_16893094_9_1 Chr5 16893094 17056851 overlap Chr5 16917527 17034541 36.37747 0 0 0 0 0 0 0 inf 1 0 0 inf 1 5_po.0_16893094_9_1 Chr5 16893094 17056851 trans Chr5 17097511 17391792 31.70203 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_po.0_16893094_9_1 Chr5 16893094 17056851 trans Chr5 17457691 17631849 10.95295 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_7647783_14_6 Chr4 7647783 7768694 cis Chr4 4839085 7642783 148.3952 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_7647783_14_6 Chr4 7647783 7768694 cis Chr4 7773694 8539521 148.3952 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_7647783_14_6 Chr4 7647783 7768694 trans Chr4 9585571 10307488 17.56948 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_edi.0_7647783_14_6 Chr4 7647783 7768694 trans Chr4 8774209 8926347 13.06288 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_rsch.4_19304889_9_1 Chr5 19304889 19527739 cis Chr5 19304889 21722643 87.51192 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_rsch.4_19304889_9_1 Chr5 19304889 19527739 trans Chr5 18155253 18164498 15.30388 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_rsch.4_19304889_9_1 Chr5 19304889 19527739 trans Chr5 18614769 18879610 14.53926 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_kn.0_13962889_6_4 Chr3 13962889 14055165 trans Chr1 5885969 6701330 33.14022 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_kn.0_13962889_6_4 Chr3 13962889 14055165 trans Chr1 8352744 9115133 14.02306 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 3_kn.0_13962889_6_4 Chr3 13962889 14055165 trans Chr4 3040818 3943122 13.45473 13971371 14026946 3135842 3619933 3 0.00429409481134 0 0 1 3 0 0 1 4_po.0_10661114_5_1 Chr4 10661114 10938171 cis Chr4 10660879 10935436 163.0643 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_po.0_10661114_5_1 Chr4 10661114 10938171 trans Chr4 10453655 10582473 91.23934 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_po.0_10661114_5_1 Chr4 10661114 10938171 trans Chr4 12005013 13527729 64.3465 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_mt.0_17806374_16_5 Chr4 17806374 18034051 cis Chr4 11268278 17801374 64.04828 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_mt.0_17806374_16_5 Chr4 17806374 18034051 cis Chr4 18039051 18519040 64.04828 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_mt.0_17806374_16_5 Chr4 17806374 18034051 trans Chr4 10639842 10999276 8.629079 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_mt.0_17806374_16_5 Chr4 17806374 18034051 trans Chr4 72640 72640 8.349957 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_sf.2_18962573_14_12 Chr1 18962573 18971290 overlap Chr1 18962754 18971094 36.7169 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_sf.2_18962573_14_12 Chr1 18962573 18971290 trans Chr4 4316672 4318801 7.996939 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_sf.2_18962573_14_12 Chr1 18962573 18971290 trans Chr1 18971499 18971499 6.513295 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_tsu.0_1011_14_6 Chr4 1011 126044 cis Chr4 978 125676 48.51671 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_tsu.0_1011_14_6 Chr4 1011 126044 trans Chr4 126646 1003563 39.30658 75454 119618 281478 660460 2 0.000628555515774 0 0 1 2 0 0 1 4_tsu.0_1011_14_6 Chr4 1011 126044 trans Chr4 1086748 1331317 12.79465 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_10392622_7_5 Chr4 10392622 10454628 cis Chr4 10359466 10387622 191.0219 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_10392622_7_5 Chr4 10392622 10454628 cis Chr4 10459628 10456248 191.0219 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_10392622_7_5 Chr4 10392622 10454628 trans Chr4 10473703 10658704 191.0219 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_bur.0_10392622_7_5 Chr4 10392622 10454628 trans Chr4 9578424 10309291 184.2113 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_tsu.0_5953923_10_4 Chr1 5953923 6026269 overlap Chr1 6009913 6013593 10.10028 0 0 0 0 0 0 0 inf 1 0 0 inf 1 1_tsu.0_5953923_10_4 Chr1 5953923 6026269 trans Chr1 4586992 4849192 9.523049 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 1_tsu.0_5953923_10_4 Chr1 5953923 6026269 trans Chr5 3715046 3715046 8.497638 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_ct.1_5927281_5_3 Chr2 5927281 5977134 trans Chr2 6469784 6717120 28.49866 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_ct.1_5927281_5_3 Chr2 5927281 5977134 trans Chr4 15284220 15288740 16.86876 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_ct.1_5927281_5_3 Chr2 5927281 5977134 trans Chr2 5654256 5885412 16.41425 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_ler.0_5239816_5_3 Chr2 5239816 5302842 trans Chr2 10335054 10335054 6.719453 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_ler.0_5239816_5_3 Chr2 5239816 5302842 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 2_ler.0_5239816_5_3 Chr2 5239816 5302842 trans NA NA NA NA inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ct.1_4703112_6_1 Chr4 4703112 4764246 trans Chr4 230370 230370 18.36057 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ct.1_4703112_6_1 Chr4 4703112 4764246 trans Chr5 3714747 3715046 16.80953 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_ct.1_4703112_6_1 Chr4 4703112 4764246 trans Chr5 1878974 3139976 13.84153 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wil.2_4692194_5_3 Chr4 4692194 4768590 trans Chr1 224178 224178 22.36596 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wil.2_4692194_5_3 Chr4 4692194 4768590 trans Chr4 284713 284713 15.978 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 4_wil.2_4692194_5_3 Chr4 4692194 4768590 trans Chr4 182432 182432 15.89307 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_wu.0_14486019_14_12 Chr5 14486019 14909641 cis Chr5 8783283 14481019 50.75274 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1 5_wu.0_14486019_14_12 Chr5 14486019 14909641 cis Chr5 14914641 15111875 50.75274 14624374 14845726 14995640 15099690 12 0.000417343148039 0.0 0.0 0.000999000999001 7 0.0 0.0 0.000999000999001 5_wu.0_14486019_14_12 Chr5 14486019 14909641 trans Chr5 15188689 18575792 30.449 14798410 14846362 15290995 16719956 3 0.000580840911469 0 0 1 3 0 0 1 5_wu.0_14486019_14_12 Chr5 14486019 14909641 trans Chr5 15120649 15172351 6.949391 inf 0 inf 0 0 0 0 inf 1 0 0 inf 1