chr bp logP sigma2 nalleles allele count estimate
1 4422339 4.216262e+00 3 2.026081e+01 0 A 1 1.204623e+01 1 A 269 6.145140e-01 2 T 203 -8.736478e-01
1 7666279 4.321802e+00 2 2.034273e+01 1 0 177 1.100887e+00 2 A 296 -6.583007e-01
1 10295898 4.104947e+00 3 2.028292e+01 0 T 1 1.898059e+01 1 T 421 4.785145e-02 2 G 51 -7.671775e-01
1 10296057 4.025282e+00 3 2.029876e+01 0 T 1 1.898059e+01 1 T 456 9.320355e-04 2 0 16 -1.212850e+00
1 14335641 4.220029e+00 3 2.026006e+01 0 A 1 1.898059e+01 1 A 49 -9.057476e-01 2 G 423 6.004974e-02
1 14335771 4.415155e+00 4 2.014435e+01 0 A 1 1.898059e+01 1 A 403 1.448011e-01 2 T 26 -4.091803e-01 3 W 43 -1.551087e+00
1 14335785 4.415155e+00 4 2.014435e+01 0 C 1 1.898059e+01 1 C 403 1.448011e-01 2 T 26 -4.091803e-01 3 Y 43 -1.551087e+00
1 14335858 4.415155e+00 4 2.014435e+01 0 T 1 1.898059e+01 1 T 403 1.448011e-01 2 C 26 -4.091803e-01 3 Y 43 -1.551087e+00
1 14335892 4.069829e+00 3 2.028990e+01 0 0 1 1.898059e+01 1 0 16 -1.315542e+00 2 TCG 456 4.535269e-03
1 14336013 4.069829e+00 3 2.028990e+01 0 0 1 1.898059e+01 1 0 16 -1.315542e+00 2 TTG 456 4.535269e-03
1 14336143 4.354112e+00 3 2.023347e+01 0 G 1 1.898059e+01 1 G 344 -2.455086e-01 2 C 128 5.115186e-01
1 14336148 4.354112e+00 3 2.023347e+01 0 T 1 1.898059e+01 1 T 344 -2.455086e-01 2 C 128 5.115186e-01
1 14336219 4.521244e+00 3 2.020036e+01 0 C 1 1.898059e+01 1 C 375 -2.347025e-01 2 T 97 7.116787e-01
1 14336238 4.069829e+00 3 2.028990e+01 0 0 1 1.898059e+01 1 0 16 -1.315542e+00 2 C 456 4.535269e-03
1 14336324 4.896143e+00 3 2.012629e+01 0 G 1 1.898059e+01 1 G 422 1.212332e-01 2 A 50 -1.402820e+00
1 18363876 4.224338e+00 3 2.025921e+01 0 T 1 1.898059e+01 1 T 353 -2.120907e-01 2 C 119 4.696421e-01
1 18363903 4.224338e+00 3 2.025921e+01 0 AAACA 1 1.898059e+01 1 AAACA 353 -2.120907e-01 2 0 119 4.696421e-01
1 18363955 4.370728e+00 4 2.015349e+01 0 TAG 1 1.898059e+01 1 TAG 326 -3.335400e-01 2 TAC 118 4.321190e-01 3 0 28 1.384408e+00
1 18364002 4.418033e+00 3 2.022080e+01 0 0 1 1.898059e+01 1 0 385 1.284471e-01 2 C 87 -7.865831e-01
1 18364003 4.362090e+00 3 2.023188e+01 0 A 1 1.898059e+01 1 A 417 8.286067e-02 2 0 55 -9.733361e-01
1 22390476 4.166559e+00 2 2.037203e+01 1 T 181 1.059286e+00 2 G 292 -6.566121e-01
1 22390519 4.166559e+00 2 2.037203e+01 1 C 181 1.059286e+00 2 A 292 -6.566121e-01
1 22390773 4.166559e+00 2 2.037203e+01 1 0 181 1.059286e+00 2 T 292 -6.566121e-01
1 22390791 4.166559e+00 2 2.037203e+01 1 G 181 1.059286e+00 2 T 292 -6.566121e-01
1 22390796 4.166559e+00 2 2.037203e+01 1 0 181 1.059286e+00 2 T 292 -6.566121e-01
1 22390807 4.166559e+00 2 2.037203e+01 1 0 181 1.059286e+00 2 AACAAAAACA 292 -6.566121e-01
1 22390860 4.166559e+00 2 2.037203e+01 1 C 181 1.059286e+00 2 T 292 -6.566121e-01
1 22391004 4.166559e+00 2 2.037203e+01 1 G 181 1.059286e+00 2 T 292 -6.566121e-01
1 22391006 4.166559e+00 2 2.037203e+01 1 T 181 1.059286e+00 2 A 292 -6.566121e-01
1 22391021 4.166559e+00 2 2.037203e+01 1 0 181 1.059286e+00 2 A 292 -6.566121e-01
1 22391027 4.200926e+00 3 2.026386e+01 1 A 181 1.059286e+00 2 T 113 -1.278165e+00 3 C 179 -2.642353e-01
1 22391039 4.166559e+00 2 2.037203e+01 1 A 181 1.059286e+00 2 G 292 -6.566121e-01
1 22391049 4.166559e+00 2 2.037203e+01 1 C 181 1.059286e+00 2 A 292 -6.566121e-01
1 22391418 4.166559e+00 2 2.037203e+01 1 T 181 1.059286e+00 2 C 292 -6.566121e-01
1 22391582 4.166559e+00 2 2.037203e+01 1 G 181 1.059286e+00 2 A 292 -6.566121e-01
1 22391609 4.166559e+00 2 2.037203e+01 1 0 181 1.059286e+00 2 C 292 -6.566121e-01
1 22731019 4.091143e+00 2 2.038626e+01 1 C 257 -7.567509e-01 2 G 216 9.003935e-01
2 1183669 4.504776e+00 4 2.012592e+01 0 ATTT 1 1.898059e+01 1 ATTT 238 4.184485e-01 2 0 26 -1.396231e+00 3 AGTT 208 -3.955256e-01
2 1183677 4.479366e+00 4 2.013114e+01 0 0 1 1.898059e+01 1 0 238 4.184485e-01 2 T 125 -2.290143e-01 3 TTT 109 -8.251793e-01
2 1183681 4.865484e+00 3 2.013234e+01 0 G 1 1.898059e+01 1 G 238 4.184485e-01 2 T 234 -5.067151e-01
2 1183691 4.865484e+00 3 2.013234e+01 0 0 1 1.898059e+01 1 0 238 4.184485e-01 2 G 234 -5.067151e-01
2 5237988 4.080680e+00 3 2.028775e+01 0 0 2 1.313057e+01 1 0 449 -1.223960e-01 2 TGTTTCACA 22 1.304304e+00
2 5238181 4.080680e+00 3 2.028775e+01 0 0 2 1.313057e+01 1 0 449 -1.223960e-01 2 A 22 1.304304e+00
2 5238504 4.080680e+00 3 2.028775e+01 0 0 2 1.313057e+01 1 0 449 -1.223960e-01 2 CCCCTGCGCAGGCTTG 22 1.304304e+00
2 5238509 4.080680e+00 3 2.028775e+01 0 TTTTAG 2 1.313057e+01 1 TTTTAG 449 -1.223960e-01 2 0 22 1.304304e+00
2 5238515 4.080680e+00 3 2.028775e+01 0 0 2 1.313057e+01 1 0 449 -1.223960e-01 2 CTTGCTA 22 1.304304e+00
2 5238776 4.080680e+00 3 2.028775e+01 0 T 2 1.313057e+01 1 T 449 -1.223960e-01 2 0 22 1.304304e+00
2 5238795 4.080680e+00 3 2.028775e+01 0 T 2 1.313057e+01 1 T 449 -1.223960e-01 2 A 22 1.304304e+00
2 5238962 4.080680e+00 3 2.028775e+01 0 C 2 1.313057e+01 1 C 449 -1.223960e-01 2 T 22 1.304304e+00
2 5239015 4.096641e+00 3 2.028457e+01 0 0 2 1.313057e+01 1 0 436 3.101838e-02 2 AGTTT 35 -1.136718e+00
2 5239053 4.096641e+00 3 2.028457e+01 0 T 2 1.313057e+01 1 T 436 3.101838e-02 2 G 35 -1.136718e+00
2 5239061 4.096641e+00 3 2.028457e+01 0 0 2 1.313057e+01 1 0 436 3.101838e-02 2 TTTTA 35 -1.136718e+00
2 5239078 4.096641e+00 3 2.028457e+01 0 G 2 1.313057e+01 1 G 436 3.101838e-02 2 T 35 -1.136718e+00
2 5239087 4.096641e+00 3 2.028457e+01 0 C 2 1.313057e+01 1 C 436 3.101838e-02 2 T 35 -1.136718e+00
2 5239096 4.096641e+00 3 2.028457e+01 0 T 2 1.313057e+01 1 T 436 3.101838e-02 2 C 35 -1.136718e+00
2 5239184 4.080680e+00 3 2.028775e+01 0 C 2 1.313057e+01 1 C 449 -1.223960e-01 2 T 22 1.304304e+00
2 5239186 4.096641e+00 3 2.028457e+01 0 C 2 1.313057e+01 1 C 436 3.101838e-02 2 T 35 -1.136718e+00
2 5239190 4.096641e+00 3 2.028457e+01 0 0 2 1.313057e+01 1 0 436 3.101838e-02 2 ATAATGCATTT 35 -1.136718e+00
2 5239787 4.096641e+00 3 2.028457e+01 0 T 2 1.313057e+01 1 T 436 3.101838e-02 2 C 35 -1.136718e+00
3 1951512 4.290470e+00 3 2.024609e+01 0 A 1 1.898059e+01 1 A 398 9.661963e-02 2 G 74 -7.761514e-01
3 1951528 4.148583e+00 3 2.027425e+01 0 GA 1 1.898059e+01 1 GA 452 1.648558e-02 2 0 20 -1.321604e+00
3 1951540 4.148583e+00 3 2.027425e+01 0 G 1 1.898059e+01 1 G 452 1.648558e-02 2 A 20 -1.321604e+00
3 1951544 4.148583e+00 3 2.027425e+01 0 C 1 1.898059e+01 1 C 452 1.648558e-02 2 G 20 -1.321604e+00
3 10657740 4.086766e+00 2 2.038708e+01 1 G 119 1.422849e+00 2 A 354 -4.783022e-01
3 10657789 4.086766e+00 2 2.038708e+01 1 C 119 1.422849e+00 2 A 354 -4.783022e-01
3 10658188 4.086766e+00 2 2.038708e+01 1 G 119 1.422849e+00 2 A 354 -4.783022e-01
3 10661541 4.086766e+00 2 2.038708e+01 1 A 119 1.422849e+00 2 G 354 -4.783022e-01
3 10662133 4.086766e+00 2 2.038708e+01 1 G 119 1.422849e+00 2 A 354 -4.783022e-01
3 10666669 4.357249e+00 2 2.033604e+01 1 A 77 1.939426e+00 2 G 396 -3.771107e-01
3 11744630 4.163139e+00 3 2.027136e+01 0 A 3 1.078208e+01 1 A 450 -1.345538e-01 2 R 20 1.410148e+00
3 11744637 4.163139e+00 3 2.027136e+01 0 G 3 1.078208e+01 1 G 450 -1.345538e-01 2 R 20 1.410148e+00
3 11744687 4.534336e+00 4 2.011984e+01 0 G 3 1.078208e+01 1 G 301 -4.515227e-01 2 A 149 5.057659e-01 3 R 20 1.410148e+00
3 11744711 4.163139e+00 3 2.027136e+01 0 0 3 1.078208e+01 1 0 450 -1.345538e-01 2 T 20 1.410148e+00
3 11744724 4.484305e+00 3 2.020767e+01 0 TAAACATG 3 1.078208e+01 1 TAAACATG 404 9.331000e-02 2 0 66 -1.061265e+00
3 11744749 4.163139e+00 3 2.027136e+01 0 T 3 1.078208e+01 1 T 450 -1.345538e-01 2 Y 20 1.410148e+00
3 11744751 4.163139e+00 3 2.027136e+01 0 T 3 1.078208e+01 1 T 450 -1.345538e-01 2 W 20 1.410148e+00
3 11744775 4.163139e+00 3 2.027136e+01 0 C 3 1.078208e+01 1 C 450 -1.345538e-01 2 S 20 1.410148e+00
3 11744796 4.163139e+00 3 2.027136e+01 0 T 3 1.078208e+01 1 T 450 -1.345538e-01 2 Y 20 1.410148e+00
3 11744807 4.163139e+00 3 2.027136e+01 0 T 3 1.078208e+01 1 T 450 -1.345538e-01 2 Y 20 1.410148e+00
3 11744818 4.095301e+00 3 2.028484e+01 0 T 3 1.078208e+01 1 T 357 -2.316253e-01 2 G 113 4.455221e-01
3 11744843 4.163139e+00 3 2.027136e+01 0 A 3 1.078208e+01 1 A 450 -1.345538e-01 2 R 20 1.410148e+00
3 11744846 4.163139e+00 3 2.027136e+01 0 T 3 1.078208e+01 1 T 450 -1.345538e-01 2 Y 20 1.410148e+00
3 11744864 5.726411e+00 3 1.996322e+01 0 G 3 1.078208e+01 1 G 450 6.540062e-02 2 C 20 -3.088826e+00
3 11744888 4.273467e+00 3 2.024946e+01 0 T 2 1.270249e+01 1 T 429 -1.852034e-01 2 A 42 1.286840e+00
3 11745223 4.743680e+00 6 1.995179e+01 0 ACCAAAAGAAAAAAAAATTCATATTGAATAGTACCCTGAAGATTTTATATAT 1 1.898059e+01 1 ACCAAAAGAAAAAAAAATTCATATTGAATAGTACCCTGAAGATTTTATATAT 333 1.623166e-01 2 0 70 -4.713952e-01 3 ACCAAAAGAAAAAACAATTCATATTGAATAGTACCCTGAAGATTTTATATAT 24 1.122541e+00 4 ACCAAAAGAAAAAAAAAATTCATATTGAATAGTACCCTGAAGATTTTATATAT 25 -2.079530e-01 5 ACCAAAAAAAAAAAAAAATTCATATTGAATAGTACCCTGAAGATTTTATATAT 20 -3.088826e+00
3 11745315 4.147447e+00 3 2.027448e+01 0 G 1 1.898059e+01 1 G 448 -1.025035e-01 2 A 24 1.122541e+00
3 11745400 4.249970e+00 3 2.025412e+01 0 A 1 1.898059e+01 1 A 449 -1.091223e-01 2 T 23 1.305015e+00
3 11745403 4.026082e+00 3 2.029860e+01 0 T 1 1.898059e+01 1 T 52 5.850686e-01 2 A 420 -1.176289e-01
3 11745552 4.249970e+00 3 2.025412e+01 0 0 1 1.898059e+01 1 0 449 -1.091223e-01 2 TATGATTTTTTTGGATAG 23 1.305015e+00
3 11745555 4.382650e+00 5 2.008686e+01 0 TGCGTTTTATTTGTTATG 1 1.898059e+01 1 TGCGTTTTATTTGTTATG 31 1.608016e+00 2 TGCGTTTTATTCGTTATG 398 -1.867031e-01 3 0 23 1.305015e+00 4 TGTTTTATTCGTTATG 20 -1.226829e+00
3 11745576 4.652114e+00 3 2.017447e+01 0 G 1 1.898059e+01 1 G 430 -1.698322e-01 2 A 42 1.286840e+00
3 11745578 4.338313e+00 3 2.023660e+01 0 G 1 1.898059e+01 1 G 438 5.225506e-02 2 C 34 -1.231421e+00
3 11745592 4.338313e+00 3 2.023660e+01 0 G 1 1.898059e+01 1 G 438 5.225506e-02 2 0 34 -1.231421e+00
3 11745629 4.249970e+00 3 2.025412e+01 0 A 1 1.898059e+01 1 A 449 -1.091223e-01 2 C 23 1.305015e+00
3 11745643 4.338313e+00 3 2.023660e+01 0 A 1 1.898059e+01 1 A 438 5.225506e-02 2 T 34 -1.231421e+00
3 11745645 4.147447e+00 3 2.027448e+01 0 T 1 1.898059e+01 1 T 448 -1.025035e-01 2 A 24 1.122541e+00
3 11745682 4.096275e+00 3 2.028465e+01 0 T 1 1.898059e+01 1 T 452 1.229202e-02 2 A 20 -1.226829e+00
3 11745699 4.871385e+00 3 2.013117e+01 0 G 1 1.898059e+01 1 G 196 5.101794e-01 2 A 276 -4.310716e-01
3 11745705 4.338313e+00 3 2.023660e+01 0 G 1 1.898059e+01 1 G 438 5.225506e-02 2 A 34 -1.231421e+00
3 11745714 4.641322e+00 3 2.017661e+01 0 G 1 1.898059e+01 1 G 149 5.666465e-01 2 A 323 -3.201576e-01
3 11745718 5.105833e+00 4 2.000305e+01 0 A 1 1.898059e+01 1 A 385 2.544851e-01 2 T 67 -1.379415e+00 3 C 20 -1.226829e+00
3 11745753 4.748460e+00 3 2.015544e+01 0 T 1 1.898059e+01 1 T 31 1.608016e+00 2 C 441 -1.560750e-01
3 11745777 4.790084e+00 4 2.006744e+01 0 T 1 1.898059e+01 1 T 405 1.813338e-01 2 W 21 -7.656675e-01 3 A 46 -1.659604e+00
3 11745838 4.652114e+00 3 2.017447e+01 0 G 1 1.898059e+01 1 G 430 -1.698322e-01 2 A 42 1.286840e+00
3 11745864 4.375830e+00 4 2.015244e+01 0 T 1 1.898059e+01 1 T 124 6.293633e-01 2 G 250 -4.809891e-01 3 0 98 2.369963e-01
3 11745878 4.652114e+00 3 2.017447e+01 0 0 1 1.898059e+01 1 0 430 -1.698322e-01 2 T 42 1.286840e+00
3 11745907 4.891970e+00 3 2.012711e+01 0 A 1 1.898059e+01 1 A 277 3.525823e-01 2 0 195 -5.981840e-01
3 11745908 4.096275e+00 3 2.028465e+01 0 0 1 1.898059e+01 1 0 452 1.229202e-02 2 AT 20 -1.226829e+00
3 11745913 4.096275e+00 3 2.028465e+01 0 A 1 1.898059e+01 1 A 452 1.229202e-02 2 G 20 -1.226829e+00
3 11746300 4.216011e+00 3 2.026086e+01 0 A 1 1.898059e+01 1 A 302 1.797939e-01 2 G 170 -4.310491e-01
3 11746371 4.216011e+00 3 2.026086e+01 0 A 1 1.898059e+01 1 A 302 1.797939e-01 2 G 170 -4.310491e-01
3 11746423 4.748460e+00 3 2.015544e+01 0 G 1 1.898059e+01 1 G 31 1.608016e+00 2 C 441 -1.560750e-01
3 11746427 4.147447e+00 3 2.027448e+01 0 T 1 1.898059e+01 1 T 448 -1.025035e-01 2 C 24 1.122541e+00
3 11746527 4.099455e+00 3 2.028401e+01 0 0 1 1.898059e+01 1 0 81 5.109558e-01 2 TC 391 -1.543939e-01
3 11746531 4.229208e+00 3 2.025824e+01 0 TCAAT 1 1.898059e+01 1 TCAAT 400 -1.664952e-01 2 0 72 6.613539e-01
3 11871042 4.465447e+00 2 2.031561e+01 1 A 235 8.725363e-01 2 G 238 -8.615380e-01
3 12056125 4.420304e+00 3 2.022035e+01 1 C 190 1.089473e+00 2 T 238 -9.023642e-01 3 A 45 1.725052e-01
3 12068242 4.614769e+00 4 2.010334e+01 1 M 31 1.878891e+00 2 C 230 -1.020035e+00 3 A 133 8.604237e-01 4 Y 79 7.838751e-01
3 12075833 4.373312e+00 3 2.022966e+01 1 G 280 7.023927e-01 2 R 172 -7.972692e-01 3 A 21 -2.835222e+00
3 12128719 4.435961e+00 3 2.021724e+01 1 T 210 8.951922e-01 2 C 237 -9.380099e-01 3 Y 26 1.319922e+00
3 12367337 4.190073e+00 3 2.026601e+01 1 G 216 8.240091e-01 2 R 176 -1.173679e+00 3 A 81 3.528590e-01
3 12493848 5.237591e+00 2 2.016972e+01 1 T 288 7.590769e-01 2 G 185 -1.181698e+00
3 12585928 4.990748e+00 2 2.021636e+01 1 T 216 1.005981e+00 2 C 257 -8.454942e-01
3 12848198 4.498317e+00 3 2.020490e+01 0 T 1 8.344760e+00 1 T 308 6.179410e-01 2 C 164 -1.211406e+00
3 13428033 4.619337e+00 2 2.028654e+01 1 C 376 4.487714e-01 2 T 97 -1.739568e+00
3 13480879 4.065817e+00 4 2.021648e+01 1 A 356 5.300192e-01 2 R 18 -1.422652e+00 3 G 78 -1.327429e+00 4 0 21 -2.835222e+00
3 14280628 4.323990e+00 3 2.023944e+01 0 G 1 1.138149e+01 1 G 440 1.842882e-01 2 R 32 -2.889635e+00
3 14280882 4.323990e+00 3 2.023944e+01 0 C 1 1.138149e+01 1 C 440 1.842882e-01 2 M 32 -2.889635e+00
3 14280984 4.323990e+00 3 2.023944e+01 0 C 1 1.138149e+01 1 C 440 1.842882e-01 2 Y 32 -2.889635e+00
3 14923307 4.348354e+00 2 2.033772e+01 1 C 325 5.764520e-01 2 T 148 -1.265858e+00
3 16714615 4.016466e+00 3 2.030052e+01 0 0 1 1.898059e+01 1 0 456 1.806290e-04 2 T 16 -1.191435e+00
3 17758703 4.160019e+00 3 2.027198e+01 0 C 5 8.853428e+00 1 C 38 -1.773022e-01 2 0 430 -8.727827e-02
3 17758708 4.160019e+00 3 2.027198e+01 0 0 5 8.853428e+00 1 0 38 -1.773022e-01 2 C 430 -8.727827e-02
3 17758711 4.160019e+00 3 2.027198e+01 0 T 5 8.853428e+00 1 T 38 -1.773022e-01 2 G 430 -8.727827e-02
3 17758713 4.160019e+00 3 2.027198e+01 0 A 5 8.853428e+00 1 A 38 -1.773022e-01 2 T 430 -8.727827e-02
4 1258086 4.470013e+00 3 2.021050e+01 0 A 1 1.898059e+01 1 A 319 2.153133e-01 2 C 153 -5.729774e-01
4 1258089 4.045779e+00 3 2.029469e+01 0 T 1 1.898059e+01 1 T 91 4.277619e-01 2 C 381 -1.519867e-01
4 1258676 4.454298e+00 3 2.021361e+01 0 G 1 1.898059e+01 1 G 441 -1.369176e-01 2 T 31 1.335486e+00
4 1258683 4.369521e+00 3 2.023041e+01 0 T 1 1.898059e+01 1 T 20 1.581082e+00 2 C 452 -1.119518e-01
4 4367812 4.387253e+00 3 2.022690e+01 0 C 1 1.898059e+01 1 C 453 3.067494e-02 2 T 19 -1.730334e+00
4 4367828 4.001470e+00 3 2.030350e+01 0 T 1 1.898059e+01 1 T 411 4.016672e-02 2 A 61 -5.817887e-01
4 4367866 4.387253e+00 3 2.022690e+01 0 G 1 1.898059e+01 1 G 453 3.067494e-02 2 T 19 -1.730334e+00
4 4367881 4.387253e+00 3 2.022690e+01 0 G 1 1.898059e+01 1 G 453 3.067494e-02 2 A 19 -1.730334e+00
4 4367884 4.387253e+00 3 2.022690e+01 0 G 1 1.898059e+01 1 G 453 3.067494e-02 2 K 19 -1.730334e+00
4 4367912 4.387253e+00 3 2.022690e+01 0 A 1 1.898059e+01 1 A 453 3.067494e-02 2 R 19 -1.730334e+00
4 4367935 4.387253e+00 3 2.022690e+01 0 G 1 1.898059e+01 1 G 453 3.067494e-02 2 A 19 -1.730334e+00
4 4367973 4.387253e+00 3 2.022690e+01 0 T 1 1.898059e+01 1 T 453 3.067494e-02 2 C 19 -1.730334e+00
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