chr bp logP sigma2 nalleles allele count estimate
1 2961959 4.448403e+00 3 6.075767e+01 0 AAA 2 2.095194e+01 1 AAA 443 1.399455e-01 2 0 28 -3.710704e+00
1 2962485 4.448403e+00 3 6.075767e+01 0 T 2 2.095194e+01 1 T 443 1.399455e-01 2 C 28 -3.710704e+00
1 14915806 4.586122e+00 4 6.044038e+01 0 0 1 2.783151e+01 1 0 437 -3.832331e-01 2 CAAGCTTAGTCTCCTCGTACAACTTTCACCCCACAA 20 2.633478e+00 3 CAAG 15 5.798120e+00
1 14915808 4.575434e+00 3 6.068210e+01 0 0 1 2.783151e+01 1 0 457 -2.512107e-01 2 TAGTCTCCTCA 15 5.798120e+00
2 5104464 4.187660e+00 3 6.091310e+01 0 A 2 2.436175e+01 1 A 451 -7.758238e-02 2 0 20 -6.866923e-01
2 5104489 4.569134e+00 3 6.068584e+01 0 A 2 2.436175e+01 1 A 449 -2.123067e-01 2 T 22 2.118281e+00
2 5104499 4.175465e+00 3 6.092038e+01 0 T 2 2.436175e+01 1 T 415 -1.359348e-01 2 C 56 1.373113e-01
2 5104533 4.447067e+00 3 6.075847e+01 0 G 2 2.436175e+01 1 G 451 -1.901160e-01 2 R 20 1.850941e+00
2 5104549 4.164870e+00 3 6.092670e+01 0 G 2 2.436175e+01 1 G 444 -1.130302e-01 2 K 27 5.414498e-02
2 17812338 4.208643e+00 2 6.120644e+01 1 A 345 8.856808e-01 2 W 128 -2.387187e+00
2 17812342 4.208643e+00 2 6.120644e+01 1 G 345 8.856808e-01 2 R 128 -2.387187e+00
2 17812353 4.208643e+00 2 6.120644e+01 1 G 345 8.856808e-01 2 R 128 -2.387187e+00
2 19556080 4.213122e+00 2 6.120390e+01 1 T 348 -8.719806e-01 2 0 125 2.427594e+00
3 8597975 4.511404e+00 2 6.103464e+01 1 C 411 -5.871545e-01 2 T 62 3.892266e+00
3 10166650 4.091608e+00 3 6.097045e+01 0 A 1 2.573950e+01 1 A 405 -4.765973e-01 2 G 67 2.496752e+00
3 12811304 4.056701e+00 3 6.099131e+01 0 C 6 -8.553749e+00 1 C 345 8.471133e-01 2 0 122 -1.974849e+00
3 12969757 4.117822e+00 3 6.095479e+01 0 T 5 1.437789e+01 1 T 36 -2.013283e+00 2 A 432 1.362831e-03
3 12969759 4.117822e+00 3 6.095479e+01 0 T 5 1.437789e+01 1 T 36 -2.013283e+00 2 C 432 1.362831e-03
3 12969769 4.117822e+00 3 6.095479e+01 0 G 5 1.437789e+01 1 G 36 -2.013283e+00 2 A 432 1.362831e-03
3 12969775 4.007086e+00 3 6.102097e+01 0 C 5 1.437789e+01 1 C 443 -2.654745e-01 2 T 25 1.828630e+00
3 14521664 4.297595e+00 3 6.084752e+01 0 A 2 2.473640e+01 1 A 450 -9.517553e-02 2 R 21 -3.163720e-01
3 14521677 4.432765e+00 3 6.076698e+01 0 T 2 2.473640e+01 1 T 233 -3.952401e-01 2 A 238 1.790678e-01
3 14522041 4.358772e+00 3 6.081106e+01 0 G 3 1.902315e+01 1 G 271 -6.127740e-01 2 A 199 5.476999e-01
3 14522042 4.402032e+00 3 6.078529e+01 0 C 3 1.902315e+01 1 C 464 -1.891342e-01 2 M 6 5.114804e+00
3 14522101 4.109046e+00 4 6.073588e+01 0 C 3 1.902315e+01 1 C 271 4.901879e-01 2 M 42 -1.412396e+00 3 A 157 -8.317820e-01
3 14522143 4.011318e+00 4 6.079674e+01 0 TTCA 3 1.902315e+01 1 TTCA 368 1.212350e-01 2 TACA 82 -1.537466e+00 3 0 20 1.219415e+00
3 14522150 4.374201e+00 3 6.080186e+01 0 G 3 1.902315e+01 1 G 231 4.699052e-01 2 T 239 -6.929605e-01
3 14525445 4.092421e+00 3 6.096997e+01 0 C 4 1.663432e+01 1 C 412 -1.315443e-02 2 S 57 -1.072240e+00
3 14586107 4.161834e+00 3 6.092851e+01 0 T 1 2.922874e+01 1 T 171 -1.180923e+00 2 0 301 5.737841e-01
3 14586112 4.118256e+00 4 6.073015e+01 0 A 1 2.922874e+01 1 A 109 -1.484781e+00 2 T 346 5.309971e-01 3 G 17 -3.006626e+00
3 14586123 4.102891e+00 3 6.096371e+01 0 T 1 2.922874e+01 1 T 412 2.519082e-01 2 C 60 -2.216915e+00
4 12112433 4.798473e+00 3 6.054963e+01 0 T 1 2.922874e+01 1 T 415 -4.486082e-01 2 0 57 2.753397e+00
4 12147646 4.325943e+00 4 6.060121e+01 0 C 1 2.922874e+01 1 C 407 -4.221247e-01 2 G 53 2.955592e+00 3 S 12 -1.172527e+00
4 13107403 4.047091e+00 4 6.077445e+01 0 T 1 -2.978429e+01 1 T 410 -3.031996e-01 2 G 52 2.716982e+00 3 K 10 1.281307e+00
4 13107440 4.006310e+00 3 6.102143e+01 0 0 1 -2.978429e+01 1 0 382 -2.966188e-01 2 A 90 1.589918e+00
4 13186139 4.298789e+00 4 6.061804e+01 0 T 1 2.922874e+01 1 T 316 -8.030056e-01 2 A 122 1.614575e+00 3 W 34 8.100840e-01
4 15424989 4.548569e+00 3 6.069807e+01 0 T 2 2.040760e+01 1 T 160 -1.470024e+00 2 A 311 6.250439e-01
4 15425022 4.859496e+00 3 6.051344e+01 0 G 2 2.040760e+01 1 G 274 -1.003354e+00 2 T 197 1.188344e+00
4 15906641 4.714096e+00 3 6.059971e+01 0 0 1 -2.978429e+01 1 0 445 -1.793913e-01 2 G 27 4.059757e+00
4 15906673 4.322601e+00 3 6.083261e+01 0 C 1 -2.978429e+01 1 C 450 2.529526e-01 2 T 22 -3.820199e+00
4 15906751 4.282916e+00 3 6.085627e+01 0 C 1 -2.978429e+01 1 C 450 2.498947e-01 2 A 22 -3.757651e+00
4 18316080 4.632769e+00 3 6.064802e+01 0 A 2 2.107634e+01 1 A 234 -1.052791e+00 2 T 237 8.616053e-01
4 18316140 4.148812e+00 4 6.071115e+01 0 T 2 2.107634e+01 1 T 192 -6.722671e-01 2 G 209 9.620461e-01 3 C 70 -1.630644e+00
4 18316144 4.575227e+00 3 6.068222e+01 0 T 2 2.107634e+01 1 T 262 -9.283218e-01 2 G 209 9.620461e-01
5 18448535 4.180634e+00 2 6.122233e+01 1 T 436 -4.219964e-01 2 Y 37 4.972714e+00
5 18448536 4.180634e+00 2 6.122233e+01 1 C 436 -4.219964e-01 2 M 37 4.972714e+00
5 20303016 4.065061e+00 4 6.076325e+01 0 T 1 -2.978429e+01 1 T 401 -3.103537e-01 2 A 48 2.857424e+00 3 W 23 7.425987e-01
5 20419237 4.222109e+00 3 6.089254e+01 0 CTG 2 1.161961e+01 1 CTG 409 -5.986750e-01 2 0 62 3.574498e+00
5 26098266 4.312680e+00 3 6.083853e+01 0 0 1 2.922874e+01 1 0 435 -3.229385e-01 2 A 37 3.006743e+00