chr bp logP sigma2 nalleles allele count estimate
1 9409036 4.016773e+00 4 8.757766e+01 0 A 1 3.421740e+01 1 A 185 -1.439091e+00 2 AA 20 -1.873148e+00 3 0 267 1.009279e+00
1 18363876 4.243719e+00 3 8.770200e+01 0 T 1 3.474778e+01 1 T 353 -6.947229e-01 2 C 119 1.768819e+00
1 18363903 4.243719e+00 3 8.770200e+01 0 AAACA 1 3.474778e+01 1 AAACA 353 -6.947229e-01 2 0 119 1.768819e+00
1 18364003 4.006840e+00 3 8.790579e+01 0 A 1 3.474778e+01 1 A 417 2.787563e-01 2 0 55 -2.745257e+00
2 9027230 4.289609e+00 3 8.766257e+01 0 0 1 3.057000e+01 1 0 439 -4.288056e-01 2 AAAATT 33 4.778050e+00
2 9027233 4.047755e+00 4 8.754985e+01 0 0 1 3.057000e+01 1 0 409 -5.820380e-01 2 CGAT 33 4.778050e+00 3 ATTTCAAAATTGA 30 1.660264e+00
2 10518423 4.046793e+00 3 8.787138e+01 0 A 1 3.421740e+01 1 A 404 -4.935576e-01 2 R 68 2.429116e+00
2 16527752 4.017292e+00 3 8.789679e+01 0 0 1 2.907082e+01 1 0 401 -6.133740e-01 2 AA 71 3.054819e+00
2 16527755 4.017292e+00 3 8.789679e+01 0 T 1 2.907082e+01 1 T 401 -6.133740e-01 2 G 71 3.054819e+00
2 16527762 4.017292e+00 3 8.789679e+01 0 A 1 2.907082e+01 1 A 401 -6.133740e-01 2 0 71 3.054819e+00
2 17927298 4.304251e+00 5 8.704471e+01 1 CAA 238 -1.148433e+00 2 CAAAA 140 2.548061e+00 3 C 41 -1.798536e+00 4 CAAA 34 -3.267821e+00 5 MAAA 20 5.072228e+00
2 19061000 4.164605e+00 3 8.777001e+01 1 T 369 2.816839e-01 2 Y 41 3.839750e+00 3 C 63 -4.148748e+00
2 19288376 4.073585e+00 2 8.828309e+01 1 A 205 -1.959135e+00 2 G 268 1.498592e+00
2 19556080 5.875449e+00 2 8.680955e+01 1 T 348 -1.257628e+00 2 0 125 3.501235e+00
2 19582887 4.535037e+00 2 8.790595e+01 1 GAT 248 1.733314e+00 2 0 225 -1.910497e+00
3 4872800 4.774704e+00 3 8.724689e+01 0 G 2 2.986875e+01 1 G 405 -3.708760e-01 2 C 66 1.370716e+00
3 4872912 5.678203e+00 3 8.647793e+01 0 A 2 2.986875e+01 1 A 225 9.860593e-01 2 G 246 -1.144719e+00
3 8597975 4.021642e+00 2 8.832550e+01 1 C 411 -6.606978e-01 2 T 62 4.379787e+00
3 10231178 4.011332e+00 2 8.833391e+01 1 C 401 -7.197674e-01 2 G 72 4.008705e+00
3 11744687 4.358689e+00 4 8.727167e+01 0 G 3 2.045492e+01 1 G 301 -1.015312e+00 2 A 149 1.755412e+00 3 R 20 -8.656086e-01
3 11744818 4.334582e+00 3 8.762395e+01 0 T 3 2.045492e+01 1 T 357 -7.243601e-01 2 G 113 1.745414e+00
3 11745400 4.102941e+00 3 8.782305e+01 0 A 1 3.474778e+01 1 A 449 -3.026252e-01 2 T 23 4.396997e+00
3 11745552 4.102941e+00 3 8.782305e+01 0 0 1 3.474778e+01 1 0 449 -3.026252e-01 2 TATGATTTTTTTGGATAG 23 4.396997e+00
3 11745629 4.102941e+00 3 8.782305e+01 0 A 1 3.474778e+01 1 A 449 -3.026252e-01 2 C 23 4.396997e+00
3 12969537 4.982025e+00 3 8.706984e+01 0 T 4 2.239226e+01 1 T 446 -2.428301e-01 2 C 23 8.144867e-01
3 12969562 5.381826e+00 3 8.672943e+01 0 0 5 2.087313e+01 1 0 449 -2.007137e-01 2 TATATAAATATTAAAAAACTTAT 19 -7.497459e-01
3 12969563 4.768718e+00 4 8.690724e+01 0 0 5 2.087313e+01 1 0 427 -2.202742e-01 2 AAATTATAAATATTATGAATATTAAA 19 -7.497459e-01 3 ACAACCAACACAACT 22 1.789369e-01
3 12969565 5.377406e+00 3 8.673318e+01 0 0 5 2.087313e+01 1 0 446 -2.428301e-01 2 TGACGCAAATGTAAC 22 1.789369e-01
3 12969570 5.377406e+00 3 8.673318e+01 0 0 5 2.087313e+01 1 0 446 -2.428301e-01 2 GTTGTAGAGGATATT 22 1.789369e-01
3 12969571 5.377406e+00 3 8.673318e+01 0 0 5 2.087313e+01 1 0 446 -2.428301e-01 2 AAGCAAGACAAAGTAGATG 22 1.789369e-01
3 12969576 4.893362e+00 4 8.679697e+01 0 G 5 2.087313e+01 1 G 347 -9.217469e-02 2 A 87 -2.498374e-01 3 R 34 -1.489563e+00
3 12969588 5.381826e+00 3 8.672943e+01 0 A 5 2.087313e+01 1 A 449 -2.007137e-01 2 0 19 -7.497459e-01
3 12969600 5.275697e+00 4 8.646017e+01 0 G 5 2.087313e+01 1 G 47 2.954416e-01 2 C 303 1.540150e-01 3 S 118 -1.397610e+00
3 12969605 5.474949e+00 3 8.665033e+01 0 A 5 2.087313e+01 1 A 435 -1.398350e-01 2 C 33 -1.319315e+00
3 12969614 5.947336e+00 3 8.625019e+01 0 G 6 1.999653e+01 1 G 46 -3.756131e-02 2 T 421 -2.808822e-01
3 12969615 5.372461e+00 3 8.673738e+01 0 T 5 2.087313e+01 1 T 46 -3.756131e-02 2 G 422 -2.432176e-01
3 12969619 5.372461e+00 3 8.673738e+01 0 C 5 2.087313e+01 1 C 46 -3.756131e-02 2 T 422 -2.432176e-01
3 12969757 5.529292e+00 3 8.660420e+01 0 T 5 2.087313e+01 1 T 36 -1.507533e+00 2 A 432 -1.159593e-01
3 12969759 5.529292e+00 3 8.660420e+01 0 T 5 2.087313e+01 1 T 36 -1.507533e+00 2 C 432 -1.159593e-01
3 12969769 5.529292e+00 3 8.660420e+01 0 G 5 2.087313e+01 1 G 36 -1.507533e+00 2 A 432 -1.159593e-01
3 12969770 5.671028e+00 3 8.648401e+01 0 C 5 2.087313e+01 1 C 447 -1.128653e-01 2 Y 21 -2.567374e+00
3 12969775 5.902567e+00 3 8.628803e+01 0 C 5 2.087313e+01 1 C 443 -3.832487e-01 2 T 25 2.616541e+00
3 12969780 5.569398e+00 4 8.620284e+01 0 T 5 2.087313e+01 1 T 47 -4.756212e-01 2 A 342 2.344764e-01 3 W 79 -2.053195e+00
3 12969784 5.381826e+00 3 8.672943e+01 0 C 5 2.087313e+01 1 C 449 -2.007137e-01 2 T 19 -7.497459e-01
3 12969799 5.463976e+00 3 8.665964e+01 0 0 5 2.087313e+01 1 0 425 -3.139895e-01 2 GGGCGATTCTCTCC 43 6.762766e-01
3 12969800 5.463976e+00 3 8.665964e+01 0 0 5 2.087313e+01 1 0 425 -3.139895e-01 2 GCATG 43 6.762766e-01
3 12969802 5.223804e+00 4 8.650576e+01 0 G 5 2.087313e+01 1 G 36 -1.507533e+00 2 T 408 1.849981e-02 3 K 24 -2.401765e+00
3 12969808 4.547527e+00 5 8.682084e+01 0 TCCTCAAACCGTC 5 2.087313e+01 1 TCCTCAAACCGTC 274 -6.691706e-01 2 CCCTCAAACCGTC 129 3.563614e-01 3 0 43 6.762766e-01 4 CCCTCAAACCGATTCTCTCCAGC 22 1.789369e-01
3 12969822 4.853290e+00 4 8.683240e+01 0 0 5 2.087313e+01 1 0 403 -3.408986e-01 2 GTTTGTTTTCTACTGCTTCA 43 6.762766e-01 3 GTTTCTTGATGTTTGTTTTCTACTGCTTCAAAATA 22 1.789369e-01
3 12969824 4.853290e+00 4 8.683240e+01 0 0 5 2.087313e+01 1 0 403 -3.408986e-01 2 ATAAATTCAGAGT 43 6.762766e-01 3 TTCAGAGT 22 1.789369e-01
3 13212957 4.754182e+00 3 8.726444e+01 0 A 4 2.057467e+01 1 A 451 -3.207623e-01 2 G 18 3.464729e+00
3 13212961 4.150762e+00 3 8.778191e+01 0 T 4 2.057467e+01 1 T 328 -2.419870e-01 2 C 141 -2.075858e-02
3 13212970 4.312721e+00 3 8.764272e+01 0 CT 4 2.057467e+01 1 CT 425 -3.000023e-01 2 0 44 1.027324e+00
3 13212979 4.162148e+00 3 8.777212e+01 0 0 4 2.057467e+01 1 0 402 -1.175913e-01 2 T 67 -5.227907e-01
3 13212994 4.338956e+00 3 8.762020e+01 0 0 4 2.057467e+01 1 0 363 4.886450e-02 2 C 106 -9.437406e-01
3 13213002 4.338498e+00 3 8.762059e+01 0 0 4 2.057467e+01 1 0 387 1.540464e-02 2 TTGCAACA 82 -1.076345e+00
3 13213005 4.145040e+00 3 8.778684e+01 0 0 4 2.057467e+01 1 0 445 -1.584775e-01 2 CAACATTGT 24 -4.906757e-01
3 13213006 4.338498e+00 3 8.762059e+01 0 0 4 2.057467e+01 1 0 387 1.540464e-02 2 G 82 -1.076345e+00
3 13624533 4.222693e+00 3 8.772007e+01 0 C 1 -2.491776e+01 1 C 436 -3.897238e-01 2 T 36 5.412148e+00
3 13624891 4.222693e+00 3 8.772007e+01 0 T 1 -2.491776e+01 1 T 436 -3.897238e-01 2 C 36 5.412148e+00
3 13624899 4.222693e+00 3 8.772007e+01 0 G 1 -2.491776e+01 1 G 436 -3.897238e-01 2 C 36 5.412148e+00
3 13625176 4.222693e+00 3 8.772007e+01 0 TCGCTT 1 -2.491776e+01 1 TCGCTT 436 -3.897238e-01 2 0 36 5.412148e+00
3 13627825 4.222693e+00 3 8.772007e+01 0 GGGTTGTGGTCGA 1 -2.491776e+01 1 GGGTTGTGGTCGA 436 -3.897238e-01 2 0 36 5.412148e+00
3 13628837 4.222693e+00 3 8.772007e+01 0 G 1 -2.491776e+01 1 G 436 -3.897238e-01 2 0 36 5.412148e+00
3 13628847 4.222693e+00 3 8.772007e+01 0 G 1 -2.491776e+01 1 G 436 -3.897238e-01 2 T 36 5.412148e+00
3 13628866 4.222693e+00 3 8.772007e+01 0 A 1 -2.491776e+01 1 A 436 -3.897238e-01 2 G 36 5.412148e+00
3 17510087 4.071133e+00 2 8.828509e+01 1 A 318 -1.195856e+00 2 C 155 2.453433e+00
3 17510093 4.071133e+00 2 8.828509e+01 1 G 318 -1.195856e+00 2 T 155 2.453433e+00
3 17510121 4.071133e+00 2 8.828509e+01 1 0 318 -1.195856e+00 2 T 155 2.453433e+00
3 17510133 4.071133e+00 2 8.828509e+01 1 0 318 -1.195856e+00 2 T 155 2.453433e+00
3 17945366 4.070617e+00 2 8.828551e+01 1 G 182 -2.165740e+00 2 A 291 1.354518e+00
3 21242249 4.170881e+00 3 8.776461e+01 0 G 1 3.421740e+01 1 G 448 1.767533e-01 2 C 24 -4.725120e+00
3 21242302 4.170881e+00 3 8.776461e+01 0 T 1 3.421740e+01 1 T 448 1.767533e-01 2 G 24 -4.725120e+00
4 1258676 4.037350e+00 3 8.787951e+01 0 G 1 3.474778e+01 1 G 441 -3.344167e-01 2 T 31 3.636452e+00
4 11351362 4.228111e+00 3 8.771541e+01 0 A 1 2.616468e+01 1 A 398 -7.009323e-01 2 G 74 3.416302e+00
4 11351370 4.228111e+00 3 8.771541e+01 0 0 1 2.616468e+01 1 0 398 -7.009323e-01 2 TTATTAGTA 74 3.416302e+00
4 11351378 4.228111e+00 3 8.771541e+01 0 A 1 2.616468e+01 1 A 398 -7.009323e-01 2 T 74 3.416302e+00
4 11351380 4.228111e+00 3 8.771541e+01 0 C 1 2.616468e+01 1 C 398 -7.009323e-01 2 A 74 3.416302e+00
4 11351382 4.228111e+00 3 8.771541e+01 0 G 1 2.616468e+01 1 G 398 -7.009323e-01 2 C 74 3.416302e+00
4 15551444 4.030148e+00 3 8.788572e+01 0 AGAGAGACAAAAAAAGT 1 2.616468e+01 1 AGAGAGACAAAAAAAGT 427 4.117914e-01 2 0 45 -4.488880e+00
4 15906673 4.615056e+00 3 8.738348e+01 0 C 1 -3.242952e+01 1 C 450 3.647079e-01 2 T 22 -5.985865e+00
4 18316080 4.332730e+00 3 8.762554e+01 0 A 2 2.702122e+01 1 A 234 -9.436692e-01 2 T 237 7.036969e-01
4 18316140 4.034363e+00 4 8.756187e+01 0 T 2 2.702122e+01 1 T 192 -2.804782e-01 2 G 209 7.162165e-01 3 C 70 -2.141141e+00
4 18316144 4.183884e+00 3 8.775343e+01 0 T 2 2.702122e+01 1 T 262 -7.776018e-01 2 G 209 7.162165e-01
4 18316182 4.430979e+00 3 8.754123e+01 0 T 2 2.651149e+01 1 T 211 -1.153263e+00 2 C 260 7.319825e-01
4 18316186 4.430979e+00 3 8.754123e+01 0 T 2 2.651149e+01 1 T 211 -1.153263e+00 2 A 260 7.319825e-01
4 18316203 4.430979e+00 3 8.754123e+01 0 C 2 2.651149e+01 1 C 211 -1.153263e+00 2 T 260 7.319825e-01
5 12220358 4.074676e+00 3 8.784738e+01 0 G 1 3.357281e+01 1 G 313 -8.420707e-01 2 T 159 1.446511e+00
5 16406485 4.082992e+00 3 8.784022e+01 1 C 213 -1.738750e+00 2 A 247 1.101987e+00 3 M 13 7.550995e+00
5 16406969 4.082992e+00 3 8.784022e+01 1 C 213 -1.738750e+00 2 T 247 1.101987e+00 3 Y 13 7.550995e+00
5 16406973 4.082992e+00 3 8.784022e+01 1 C 213 -1.738750e+00 2 T 247 1.101987e+00 3 Y 13 7.550995e+00
5 16407013 4.082992e+00 3 8.784022e+01 1 A 213 -1.738750e+00 2 G 247 1.101987e+00 3 R 13 7.550995e+00
5 16407331 4.082992e+00 3 8.784022e+01 1 T 213 -1.738750e+00 2 C 247 1.101987e+00 3 Y 13 7.550995e+00
5 16407435 4.082992e+00 3 8.784022e+01 1 C 213 -1.738750e+00 2 T 247 1.101987e+00 3 Y 13 7.550995e+00
5 16795740 4.222268e+00 3 8.772043e+01 0 G 1 2.616468e+01 1 G 455 -3.444715e-01 2 A 17 7.680579e+00
5 17594492 4.090109e+00 2 8.826959e+01 1 0 195 -2.050551e+00 2 C 278 1.438336e+00
5 17594494 4.090109e+00 2 8.826959e+01 1 A 195 -2.050551e+00 2 C 278 1.438336e+00
5 17684209 4.044918e+00 2 8.830649e+01 1 0 364 -9.339116e-01 2 GAG 109 3.118751e+00
5 18152863 4.026742e+00 2 8.832133e+01 1 T 343 -1.048005e+00 2 C 130 2.765121e+00
5 18153507 4.026742e+00 2 8.832133e+01 1 0 343 -1.048005e+00 2 C 130 2.765121e+00
5 18605749 4.074170e+00 4 8.752615e+01 1 TA 341 -7.870470e-01 2 AA 73 2.601156e+00 3 TT 31 -2.793023e+00 4 TGGGAGGAATTTGTTTGTTTTTTTTTTAA 28 5.895797e+00
5 18605753 4.586737e+00 2 8.786366e+01 1 T 372 -9.542116e-01 2 C 101 3.514522e+00
5 18605768 4.586737e+00 2 8.786366e+01 1 T 372 -9.542116e-01 2 C 101 3.514522e+00
5 18605783 4.586737e+00 2 8.786366e+01 1 T 372 -9.542116e-01 2 C 101 3.514522e+00
5 18605799 4.586737e+00 2 8.786366e+01 1 G 372 -9.542116e-01 2 T 101 3.514522e+00
5 18605871 4.226374e+00 3 8.771690e+01 1 T 355 -1.021044e+00 2 G 64 4.434128e+00 3 K 54 1.457154e+00
5 18606011 4.320013e+00 2 8.808176e+01 1 0 355 -1.021044e+00 2 T 118 3.071784e+00
5 18606014 4.586737e+00 2 8.786366e+01 1 C 372 -9.542116e-01 2 A 101 3.514522e+00
5 18606021 4.586737e+00 2 8.786366e+01 1 A 372 -9.542116e-01 2 G 101 3.514522e+00
5 18606079 4.320013e+00 2 8.808176e+01 1 C 355 -1.021044e+00 2 T 118 3.071784e+00
5 18606121 4.586737e+00 2 8.786366e+01 1 TGAGAAGGTATAAGACACTGAACGATCAGAGTCTGCTT 372 -9.542116e-01 2 TGAGAAGTTA 101 3.514522e+00
5 18606331 4.320013e+00 2 8.808176e+01 1 A 355 -1.021044e+00 2 0 118 3.071784e+00
5 18606473 4.320013e+00 2 8.808176e+01 1 TA 355 -1.021044e+00 2 0 118 3.071784e+00
5 18606627 4.320013e+00 2 8.808176e+01 1 A 355 -1.021044e+00 2 T 118 3.071784e+00
5 18606924 4.586737e+00 2 8.786366e+01 1 A 372 -9.542116e-01 2 C 101 3.514522e+00
5 18606931 4.138387e+00 3 8.779256e+01 1 A 348 -1.104160e+00 2 T 101 3.514522e+00 3 W 24 1.220044e+00
5 18607004 4.320013e+00 2 8.808176e+01 1 C 355 -1.021044e+00 2 A 118 3.071784e+00
5 18607017 4.320013e+00 2 8.808176e+01 1 T 355 -1.021044e+00 2 A 118 3.071784e+00
5 18607056 4.320013e+00 2 8.808176e+01 1 G 355 -1.021044e+00 2 C 118 3.071784e+00
5 18607096 4.320013e+00 2 8.808176e+01 1 G 355 -1.021044e+00 2 C 118 3.071784e+00
5 18607215 4.320013e+00 2 8.808176e+01 1 C 355 -1.021044e+00 2 T 118 3.071784e+00
5 18607236 4.320013e+00 2 8.808176e+01 1 C 355 -1.021044e+00 2 A 118 3.071784e+00
5 18607264 4.320013e+00 2 8.808176e+01 1 T 355 -1.021044e+00 2 A 118 3.071784e+00
5 18607313 4.203853e+00 3 8.773626e+01 1 0 372 -9.542116e-01 2 GGCGTGTTAT 64 4.434128e+00 3 GGCGTGTTATTCGTTTATGAT 37 1.923853e+00
5 18607377 4.586737e+00 2 8.786366e+01 1 0 372 -9.542116e-01 2 AAACAACT 101 3.514522e+00
5 18607392 4.005928e+00 4 8.758740e+01 1 G 372 -9.542116e-01 2 TGATGACTAATTGA 41 5.609286e+00 3 TGA 37 1.923853e+00 4 TGATGG 23 2.339280e+00
5 18607540 4.320013e+00 2 8.808176e+01 1 T 355 -1.021044e+00 2 0 118 3.071784e+00
5 18607569 4.320013e+00 2 8.808176e+01 1 AAAAG 355 -1.021044e+00 2 0 118 3.071784e+00
5 18607598 4.586737e+00 2 8.786366e+01 1 G 372 -9.542116e-01 2 A 101 3.514522e+00
5 18607605 4.320013e+00 2 8.808176e+01 1 A 355 -1.021044e+00 2 T 118 3.071784e+00
5 18607863 4.359914e+00 2 8.804914e+01 1 T 371 -9.333997e-01 2 A 102 3.395013e+00
5 18607935 4.359914e+00 2 8.804914e+01 1 A 371 -9.333997e-01 2 G 102 3.395013e+00
5 18607943 4.117118e+00 2 8.824754e+01 1 0 354 -9.994211e-01 2 G 119 2.973068e+00
5 18607948 4.359914e+00 2 8.804914e+01 1 A 371 -9.333997e-01 2 C 102 3.395013e+00
5 18607953 4.359914e+00 2 8.804914e+01 1 C 371 -9.333997e-01 2 T 102 3.395013e+00
5 18607982 4.359914e+00 2 8.804914e+01 1 G 371 -9.333997e-01 2 T 102 3.395013e+00
5 18607987 4.359914e+00 2 8.804914e+01 1 G 371 -9.333997e-01 2 C 102 3.395013e+00
5 18607992 4.117118e+00 2 8.824754e+01 1 0 354 -9.994211e-01 2 AACG 119 2.973068e+00
5 18609719 4.117118e+00 2 8.824754e+01 1 TAG 354 -9.994211e-01 2 0 119 2.973068e+00
5 18610555 4.117118e+00 2 8.824754e+01 1 C 354 -9.994211e-01 2 A 119 2.973068e+00
5 18611795 4.117118e+00 2 8.824754e+01 1 0 354 -9.994211e-01 2 T 119 2.973068e+00
5 18613430 4.117118e+00 2 8.824754e+01 1 A 354 -9.994211e-01 2 C 119 2.973068e+00
5 18613527 4.117118e+00 2 8.824754e+01 1 T 354 -9.994211e-01 2 C 119 2.973068e+00