chr bp logP sigma2 nalleles allele count estimate
1 1137726 4.344990e+00 3 9.091021e+01 0 T 1 4.080342e+01 1 T 290 -5.889268e-01 2 0 182 7.142052e-01
1 1137741 4.006214e+00 3 9.121248e+01 0 C 1 4.080342e+01 1 C 450 -1.606651e-02 2 A 22 -1.526068e+00
1 1137807 4.402549e+00 3 9.085895e+01 0 A 1 4.080342e+01 1 A 272 4.909136e-01 2 C 200 -8.716596e-01
1 1137816 4.402549e+00 3 9.085895e+01 0 G 1 4.080342e+01 1 G 272 4.909136e-01 2 A 200 -8.716596e-01
1 1137818 4.402549e+00 3 9.085895e+01 0 A 1 4.080342e+01 1 A 272 4.909136e-01 2 T 200 -8.716596e-01
1 1137829 4.402549e+00 3 9.085895e+01 0 G 1 4.080342e+01 1 G 272 4.909136e-01 2 T 200 -8.716596e-01
1 1137850 4.344990e+00 3 9.091021e+01 0 A 1 4.080342e+01 1 A 290 -5.889268e-01 2 C 182 7.142052e-01
1 1137905 4.137188e+00 3 9.109550e+01 0 G 1 4.080342e+01 1 G 389 -3.020233e-01 2 C 83 9.238995e-01
1 7253222 4.026912e+00 3 9.119398e+01 0 C 1 4.080342e+01 1 C 422 -2.055582e-01 2 G 50 9.188426e-01
1 17811720 4.355305e+00 2 9.136457e+01 1 G 360 1.015319e+00 2 R 113 -3.234643e+00
1 17811725 4.355305e+00 2 9.136457e+01 1 G 360 1.015319e+00 2 R 113 -3.234643e+00
1 17812338 4.639905e+00 2 9.112308e+01 1 A 345 1.143547e+00 2 W 128 -3.082217e+00
1 17812342 4.639905e+00 2 9.112308e+01 1 G 345 1.143547e+00 2 R 128 -3.082217e+00
1 17812353 4.639905e+00 2 9.112308e+01 1 G 345 1.143547e+00 2 R 128 -3.082217e+00
1 19409047 4.195877e+00 4 9.070488e+01 0 T 1 3.227261e+01 1 T 412 4.702958e-01 2 A 28 -4.848477e+00 3 0 32 -2.821159e+00
1 19409059 4.086704e+00 3 9.114057e+01 0 A 1 3.227261e+01 1 A 390 4.925579e-01 2 C 82 -2.736222e+00
1 19556080 4.965772e+00 2 9.084645e+01 1 T 348 -1.168327e+00 2 0 125 3.252622e+00
2 2757890 4.095470e+00 3 9.113274e+01 0 C 1 3.227261e+01 1 C 449 -3.459647e-01 2 T 23 5.350675e+00
2 2757894 4.095470e+00 3 9.113274e+01 0 C 1 3.227261e+01 1 C 449 -3.459647e-01 2 T 23 5.350675e+00
2 2757983 4.095470e+00 3 9.113274e+01 0 G 1 3.227261e+01 1 G 449 -3.459647e-01 2 C 23 5.350675e+00
2 2758162 4.095470e+00 3 9.113274e+01 0 G 1 3.227261e+01 1 G 449 -3.459647e-01 2 T 23 5.350675e+00
2 2758184 4.095470e+00 3 9.113274e+01 0 0 1 3.227261e+01 1 0 449 -3.459647e-01 2 G 23 5.350675e+00
2 2758195 4.095470e+00 3 9.113274e+01 0 0 1 3.227261e+01 1 0 449 -3.459647e-01 2 T 23 5.350675e+00
2 2758657 4.095470e+00 3 9.113274e+01 0 G 1 3.227261e+01 1 G 449 -3.459647e-01 2 A 23 5.350675e+00
2 3017357 4.060271e+00 3 9.116418e+01 0 G 1 3.227261e+01 1 G 448 -3.492821e-01 2 0 24 5.175241e+00
2 3017732 4.060271e+00 3 9.116418e+01 0 G 1 3.227261e+01 1 G 448 -3.492821e-01 2 R 24 5.175241e+00
2 3017735 4.060271e+00 3 9.116418e+01 0 T 1 3.227261e+01 1 T 448 -3.492821e-01 2 K 24 5.175241e+00
2 3017835 4.060271e+00 3 9.116418e+01 0 C 1 3.227261e+01 1 C 448 -3.492821e-01 2 S 24 5.175241e+00
2 3017836 4.060271e+00 3 9.116418e+01 0 T 1 3.227261e+01 1 T 448 -3.492821e-01 2 W 24 5.175241e+00
2 3017921 4.060271e+00 3 9.116418e+01 0 T 1 3.227261e+01 1 T 448 -3.492821e-01 2 W 24 5.175241e+00
2 3018076 4.060271e+00 3 9.116418e+01 0 G 1 3.227261e+01 1 G 448 -3.492821e-01 2 K 24 5.175241e+00
2 3018240 4.323452e+00 3 9.092940e+01 0 T 1 3.227261e+01 1 T 425 -5.028252e-01 2 K 47 3.860173e+00
2 3018241 4.323452e+00 3 9.092940e+01 0 C 1 3.227261e+01 1 C 425 -5.028252e-01 2 S 47 3.860173e+00
2 3018259 4.259833e+00 4 9.064553e+01 0 T 1 3.227261e+01 1 T 232 1.594278e-01 2 W 47 3.860173e+00 3 Y 193 -1.298901e+00
2 3018409 4.060271e+00 3 9.116418e+01 0 T 1 3.227261e+01 1 T 448 -3.492821e-01 2 K 24 5.175241e+00
2 3761119 4.002930e+00 3 9.121541e+01 0 0 1 3.227261e+01 1 0 74 2.697095e+00 2 A 398 -5.825569e-01
2 4872912 5.111073e+00 3 9.023037e+01 0 A 2 2.837473e+01 1 A 225 1.020446e+00 2 G 246 -1.164023e+00
2 10240742 4.091049e+00 3 9.113669e+01 0 T 1 4.080342e+01 1 T 425 5.337619e-02 2 C 47 -1.350815e+00
2 10241787 4.062237e+00 3 9.116242e+01 0 A 1 4.080342e+01 1 A 445 9.321845e-03 2 C 27 -1.664876e+00
2 10242037 4.107400e+00 3 9.112209e+01 0 T 1 4.080342e+01 1 T 333 1.961528e-01 2 C 139 -7.634697e-01
2 12383147 4.131205e+00 3 9.110084e+01 0 C 2 2.509142e+01 1 C 419 -4.710482e-01 2 T 52 2.830507e+00
2 12969770 4.093335e+00 3 9.113465e+01 0 C 5 1.743626e+01 1 C 447 -3.886491e-02 2 Y 21 -3.324223e+00
2 12969775 4.273662e+00 3 9.097377e+01 0 C 5 1.743626e+01 1 C 443 -3.739646e-01 2 T 25 3.139402e+00
2 13200988 4.497221e+00 3 9.077471e+01 0 T 1 4.080342e+01 1 T 446 9.052314e-02 2 0 26 -3.122182e+00
2 13200995 4.282983e+00 3 9.096546e+01 0 G 1 4.080342e+01 1 G 457 -1.932150e-01 2 A 15 3.166388e+00
2 13201063 4.132047e+00 3 9.110009e+01 0 T 1 4.080342e+01 1 T 446 2.504584e-02 2 C 26 -1.998995e+00
2 13201117 4.147117e+00 3 9.108664e+01 0 C 1 4.080342e+01 1 C 414 -2.646337e-01 2 T 58 1.185430e+00
2 13201136 4.026319e+00 3 9.119451e+01 0 T 1 4.080342e+01 1 T 388 -2.470998e-01 2 C 84 6.556107e-01
2 13201228 4.116763e+00 3 9.111373e+01 0 C 1 4.080342e+01 1 C 451 9.969801e-03 2 A 21 -2.157133e+00
2 13201241 4.116763e+00 3 9.111373e+01 0 G 1 4.080342e+01 1 G 451 9.969801e-03 2 A 21 -2.157133e+00
2 13201252 4.147117e+00 3 9.108664e+01 0 C 1 4.080342e+01 1 C 414 -2.646337e-01 2 T 58 1.185430e+00
2 13201270 4.116763e+00 3 9.111373e+01 0 G 1 4.080342e+01 1 G 451 9.969801e-03 2 T 21 -2.157133e+00
2 13201522 4.639616e+00 3 9.064815e+01 0 C 1 4.080342e+01 1 C 445 -2.870544e-01 2 A 27 3.219844e+00
2 13201524 4.116763e+00 3 9.111373e+01 0 G 1 4.080342e+01 1 G 451 9.969801e-03 2 T 21 -2.157133e+00
2 13201649 4.282983e+00 3 9.096546e+01 0 A 1 4.080342e+01 1 A 457 -1.932150e-01 2 0 15 3.166388e+00
2 13212571 4.392800e+00 3 9.086763e+01 0 C 1 4.080342e+01 1 C 429 1.246788e-01 2 T 43 -2.192805e+00
2 13955155 4.517774e+00 4 9.040691e+01 0 G 4 2.208775e+01 1 G 356 -2.715637e-01 2 C 72 1.094907e+00 3 S 41 -1.719699e+00
2 13955161 4.172998e+00 4 9.072612e+01 0 A 4 2.208775e+01 1 A 392 -2.854542e-02 2 T 56 -8.246022e-01 3 W 21 -1.475403e+00
2 14521664 4.719744e+00 3 9.057701e+01 0 A 2 3.153307e+01 1 A 450 -9.186842e-02 2 R 21 -1.034541e+00
2 14521677 4.699852e+00 3 9.059466e+01 0 T 2 3.153307e+01 1 T 233 -2.776695e-01 2 A 238 6.852307e-03
2 14522041 4.043303e+00 3 9.117934e+01 0 G 3 2.281940e+01 1 G 271 -6.451681e-01 2 A 199 5.345847e-01
2 14522042 4.062729e+00 3 9.116198e+01 0 C 3 2.281940e+01 1 C 464 -2.136132e-01 2 M 6 5.109722e+00
2 14522101 4.319298e+00 4 9.059042e+01 0 C 3 2.281940e+01 1 C 271 7.489280e-01 2 M 42 -1.892286e+00 3 A 157 -1.222559e+00
2 14522150 4.259068e+00 3 9.098678e+01 0 G 3 2.281940e+01 1 G 231 5.964933e-01 2 T 239 -8.629630e-01
2 14525445 4.410201e+00 3 9.085214e+01 0 C 4 2.032839e+01 1 C 412 8.053728e-02 2 S 57 -2.008683e+00
2 14527267 4.945226e+00 3 9.037711e+01 0 A 2 3.165730e+01 1 A 392 6.825988e-02 2 T 79 -1.140158e+00
2 14527276 4.737266e+00 3 9.056146e+01 0 C 2 3.165730e+01 1 C 445 -1.003317e-01 2 Y 26 -7.179606e-01
2 14527280 4.717328e+00 3 9.057915e+01 0 C 2 3.165730e+01 1 C 459 -1.420776e-01 2 M 12 1.582506e-01
2 14527281 4.307630e+00 4 9.060123e+01 0 AT 2 3.165730e+01 1 AT 382 2.970492e-02 2 0 42 -2.582004e-01 3 ATAT 47 -1.357818e+00
2 14527295 4.808963e+00 3 9.049786e+01 0 G 2 3.165730e+01 1 G 443 -2.070117e-01 2 C 28 1.013984e+00
2 14527300 4.246359e+00 4 9.065803e+01 0 G 2 3.165730e+01 1 G 443 -2.070117e-01 2 R 12 1.582506e-01 3 A 16 1.655785e+00
2 14527316 4.717328e+00 3 9.057915e+01 0 G 2 3.165730e+01 1 G 459 -1.420776e-01 2 R 12 1.582506e-01
2 14527326 4.727013e+00 3 9.057056e+01 0 A 2 3.165730e+01 1 A 311 -5.982920e-02 2 C 160 -2.794233e-01
2 14527342 5.009568e+00 3 9.032015e+01 0 G 2 3.165730e+01 1 G 430 2.323233e-02 2 A 41 -1.787915e+00
2 14527347 4.714942e+00 3 9.058127e+01 0 A 2 3.165730e+01 1 A 417 -1.303818e-01 2 0 54 -1.656558e-01
2 14527351 4.717328e+00 3 9.057915e+01 0 C 2 3.165730e+01 1 C 459 -1.420776e-01 2 T 12 1.582506e-01
2 14527361 4.907798e+00 3 9.041026e+01 0 A 2 3.165730e+01 1 A 439 -2.459958e-01 2 0 32 1.396174e+00
2 14527362 5.050417e+00 3 9.028401e+01 0 0 2 3.165730e+01 1 0 423 -3.179308e-01 2 C 48 1.482711e+00
2 14527368 4.925612e+00 3 9.039448e+01 0 A 2 3.165730e+01 1 A 418 1.935621e-02 2 G 53 -1.347274e+00
2 14527391 4.842127e+00 3 9.046846e+01 0 0 2 3.165730e+01 1 0 455 -1.973784e-01 2 TT 16 1.655785e+00
2 14527395 4.842127e+00 3 9.046846e+01 0 AA 2 3.165730e+01 1 AA 455 -1.973784e-01 2 0 16 1.655785e+00
2 14527403 5.009568e+00 3 9.032015e+01 0 C 2 3.165730e+01 1 C 430 2.323233e-02 2 A 41 -1.787915e+00
2 14527405 5.056583e+00 3 9.027856e+01 0 G 2 3.165730e+01 1 G 447 -7.047547e-03 2 A 24 -2.506848e+00
2 14527406 5.009568e+00 3 9.032015e+01 0 G 2 3.165730e+01 1 G 430 2.323233e-02 2 A 41 -1.787915e+00
2 14527409 4.951509e+00 4 9.000811e+01 0 A 2 3.165730e+01 1 A 262 3.935426e-01 2 C 159 -1.337759e+00 3 M 50 9.256190e-01
2 14527442 5.009568e+00 3 9.032015e+01 0 C 2 3.165730e+01 1 C 430 2.323233e-02 2 G 41 -1.787915e+00
2 14527448 4.246546e+00 5 9.037376e+01 0 A 2 3.165730e+01 1 A 130 1.873232e-01 2 C 132 5.966375e-01 3 W 91 2.255136e-03 4 T 118 -1.412102e+00
2 14527454 4.950045e+00 3 9.037285e+01 0 G 2 3.165730e+01 1 G 339 -4.190878e-01 2 T 132 5.966375e-01
2 14527460 4.946858e+00 3 9.037567e+01 0 G 2 3.165730e+01 1 G 351 -3.993497e-01 2 T 120 6.404762e-01
2 14527465 5.009568e+00 3 9.032015e+01 0 G 2 3.165730e+01 1 G 430 2.323233e-02 2 A 41 -1.787915e+00
2 14527502 4.737266e+00 3 9.056146e+01 0 G 2 3.165730e+01 1 G 445 -1.003317e-01 2 R 26 -7.179606e-01
2 14527509 5.009568e+00 3 9.032015e+01 0 T 2 3.165730e+01 1 T 430 2.323233e-02 2 G 41 -1.787915e+00
2 14527516 5.009568e+00 3 9.032015e+01 0 T 2 3.165730e+01 1 T 430 2.323233e-02 2 G 41 -1.787915e+00
2 14527520 4.946858e+00 3 9.037567e+01 0 C 2 3.165730e+01 1 C 351 -3.993497e-01 2 0 120 6.404762e-01
2 14527523 4.716935e+00 3 9.057950e+01 0 A 2 3.165730e+01 1 A 284 -1.697192e-01 2 T 187 -8.082534e-02
2 14527535 5.056583e+00 3 9.027856e+01 0 TT 2 3.165730e+01 1 TT 447 -7.047547e-03 2 0 24 -2.506848e+00
2 14527541 5.009568e+00 3 9.032015e+01 0 G 2 3.165730e+01 1 G 430 2.323233e-02 2 0 41 -1.787915e+00
2 14527548 4.775489e+00 3 9.052755e+01 0 C 2 3.165730e+01 1 C 240 9.299142e-02 2 G 231 -3.707037e-01
2 14527563 4.907798e+00 3 9.041026e+01 0 CA 2 3.165730e+01 1 CA 439 -2.459958e-01 2 0 32 1.396174e+00
2 14527571 4.821290e+00 3 9.048693e+01 0 T 2 3.165730e+01 1 T 456 -7.874089e-02 2 W 15 -1.827250e+00
2 14527576 4.166815e+00 4 9.073187e+01 0 A 2 3.165730e+01 1 A 306 1.620594e-03 2 R 12 1.582506e-01 3 G 153 -4.294739e-01
2 14527582 4.604098e+00 4 9.032730e+01 0 T 2 3.165730e+01 1 T 250 4.048366e-01 2 G 180 -5.067737e-01 3 C 41 -1.787915e+00
2 14527588 4.962753e+00 3 9.036159e+01 0 T 2 3.165730e+01 1 T 265 2.784921e-01 2 G 206 -6.656068e-01
2 14527595 4.753564e+00 3 9.054700e+01 0 G 2 3.165730e+01 1 G 306 1.620594e-03 2 A 165 -3.867303e-01
2 14527619 4.864241e+00 3 9.044886e+01 0 T 2 3.165730e+01 1 T 362 6.513173e-02 2 G 109 -7.971770e-01
2 14527624 4.475950e+00 4 9.044553e+01 0 A 2 3.165730e+01 1 A 403 -1.233916e-01 2 G 36 -1.618482e+00 3 T 32 1.396174e+00
2 14527626 4.310322e+00 4 9.059874e+01 0 C 2 3.165730e+01 1 C 427 -2.573564e-01 2 M 12 1.582506e-01 3 A 32 1.396174e+00
2 14527648 5.009568e+00 3 9.032015e+01 0 A 2 3.165730e+01 1 A 430 2.323233e-02 2 T 41 -1.787915e+00
2 14527654 4.821290e+00 3 9.048693e+01 0 G 2 3.165730e+01 1 G 456 -7.874089e-02 2 S 15 -1.827250e+00
2 14527670 4.715050e+00 3 9.058117e+01 0 A 2 3.165730e+01 1 A 255 -1.481452e-01 2 G 216 -1.182295e-01
2 14527671 5.009568e+00 3 9.032015e+01 0 T 2 3.165730e+01 1 T 430 2.323233e-02 2 A 41 -1.787915e+00
2 14527716 4.821689e+00 3 9.048658e+01 0 T 2 3.165730e+01 1 T 335 6.156337e-02 2 C 136 -6.171936e-01
2 14527722 4.985695e+00 3 9.034128e+01 0 T 2 3.165730e+01 1 T 431 1.469408e-02 2 C 40 -1.741194e+00
2 14527726 4.798305e+00 3 9.050731e+01 0 C 2 3.165730e+01 1 C 328 4.510196e-02 2 T 143 -5.462101e-01
2 14527729 4.798305e+00 3 9.050731e+01 0 A 2 3.165730e+01 1 A 328 4.510196e-02 2 T 143 -5.462101e-01
2 14527746 5.162401e+00 3 9.018500e+01 0 G 3 2.648268e+01 1 G 422 -2.837395e-02 2 C 48 -1.405713e+00
2 14527764 5.019596e+00 3 9.031128e+01 0 A 3 2.648268e+01 1 A 406 -2.557311e-01 2 R 64 3.809184e-01
2 14527769 5.068168e+00 3 9.026831e+01 0 G 3 2.648268e+01 1 G 455 -1.143720e-01 2 R 15 -1.827250e+00
2 14527780 5.019596e+00 3 9.031128e+01 0 G 3 2.648268e+01 1 G 406 -2.557311e-01 2 R 64 3.809184e-01
2 14527790 5.021210e+00 3 9.030985e+01 0 C 3 2.648268e+01 1 C 324 -2.028410e-02 2 T 146 -4.991506e-01
2 14527801 5.163494e+00 3 9.018404e+01 0 C 3 2.648268e+01 1 C 421 -3.117234e-01 2 Y 49 1.056888e+00
2 14527836 5.001854e+00 3 9.032698e+01 0 G 3 2.648268e+01 1 G 423 -2.286450e-01 2 0 47 3.674214e-01
2 14527840 5.162401e+00 3 9.018500e+01 0 C 3 2.648268e+01 1 C 422 -2.837395e-02 2 A 48 -1.405713e+00
2 14527852 5.373529e+00 3 8.999863e+01 0 T 3 2.648268e+01 1 T 464 -2.372982e-01 2 G 6 5.109722e+00
2 14528325 4.719832e+00 3 9.057693e+01 0 A 2 3.165730e+01 1 A 236 -2.010445e-01 2 G 235 -6.752378e-02
2 15367534 4.050402e+00 3 9.117300e+01 0 T 1 3.227261e+01 1 T 367 5.788594e-01 2 G 105 -2.330610e+00
2 17344211 4.452089e+00 3 9.081486e+01 0 T 1 3.227261e+01 1 T 280 -1.185763e+00 2 C 192 1.561151e+00
2 17344230 4.452089e+00 3 9.081486e+01 0 C 1 3.227261e+01 1 C 280 -1.185763e+00 2 T 192 1.561151e+00
3 5635589 4.026880e+00 3 9.119401e+01 0 G 1 4.080342e+01 1 G 452 -1.592284e-01 2 A 20 1.558390e+00
3 5635691 4.079680e+00 3 9.114684e+01 0 C 1 4.080342e+01 1 C 389 1.021360e-01 2 Y 83 -9.702931e-01
3 5635696 4.057197e+00 3 9.116693e+01 0 G 1 4.080342e+01 1 G 415 5.549152e-02 2 A 57 -1.119867e+00
3 5635779 4.031512e+00 3 9.118987e+01 0 T 1 4.080342e+01 1 T 424 -2.048493e-01 2 A 48 9.594312e-01
3 5635805 4.031512e+00 3 9.118987e+01 0 G 1 4.080342e+01 1 G 424 -2.048493e-01 2 A 48 9.594312e-01
3 8565263 4.649654e+00 3 9.063923e+01 0 T 2 2.802313e+01 1 T 419 -4.470488e-01 2 G 52 2.524369e+00
3 8565264 4.649654e+00 3 9.063923e+01 0 C 2 2.802313e+01 1 C 419 -4.470488e-01 2 A 52 2.524369e+00
3 11351362 4.038197e+00 3 9.118390e+01 0 A 1 3.227261e+01 1 A 398 -5.881995e-01 2 G 74 2.727443e+00
3 11351370 4.038197e+00 3 9.118390e+01 0 0 1 3.227261e+01 1 0 398 -5.881995e-01 2 TTATTAGTA 74 2.727443e+00
3 11351378 4.038197e+00 3 9.118390e+01 0 A 1 3.227261e+01 1 A 398 -5.881995e-01 2 T 74 2.727443e+00
3 11351380 4.038197e+00 3 9.118390e+01 0 C 1 3.227261e+01 1 C 398 -5.881995e-01 2 A 74 2.727443e+00
3 11351382 4.038197e+00 3 9.118390e+01 0 G 1 3.227261e+01 1 G 398 -5.881995e-01 2 C 74 2.727443e+00
3 15424155 4.029686e+00 3 9.119150e+01 0 0 1 4.080342e+01 1 0 326 1.475001e-01 2 T 146 -6.088250e-01
3 15424180 4.006175e+00 3 9.121251e+01 0 0 1 4.080342e+01 1 0 434 -1.806208e-01 2 T 38 9.891056e-01
3 15424305 4.064675e+00 3 9.116025e+01 0 A 1 4.080342e+01 1 A 430 3.593190e-02 2 C 42 -1.339384e+00
3 15424308 4.417950e+00 3 9.084524e+01 0 A 1 4.080342e+01 1 A 423 1.461401e-01 2 0 49 -2.094300e+00
3 15424351 4.417950e+00 3 9.084524e+01 0 T 1 4.080342e+01 1 T 423 1.461401e-01 2 G 49 -2.094300e+00
3 15424391 4.323729e+00 3 9.092915e+01 0 T 1 4.080342e+01 1 T 417 -3.113370e-01 2 A 55 1.618620e+00
3 15424476 4.394099e+00 3 9.086648e+01 0 T 1 4.080342e+01 1 T 185 -9.181240e-01 2 C 287 4.496499e-01
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