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R.version
search()
.libPaths()
options()
Sys.getenv()
Sys.info()
.Machine
.Platform

Attached Packages

Installed Packages

R.version

platform i486-pc-linux-gnu
arch i486
os linux-gnu
system i486, linux-gnu
status  
major 2
minor 5.1
year 2007
month 06
day 27
svn rev 42083
language R
version.string R version 2.5.1 (2007-06-27)


search()

.GlobalEnv
package:graphics
package:grDevices
package:datasets
package:stats
package:brew
package:utils
package:methods
Autoloads
package:base


.libPaths()

/usr/local/lib/R/site-library
/usr/lib/R/site-library
/usr/lib/R/library


options()

add.smooth TRUE
browser firefox
check.bounds FALSE
continue +
contrasts
unordered contr.treatment
ordered contr.poly
device X11
digits 7
dvipscmd /usr/bin/dvips
echo TRUE
editor vi
encoding native.enc
example.ask default
expressions 5000
help.try.all.packages FALSE
HTTPUserAgent R (2.5.1 i486-pc-linux-gnu i486 linux-gnu)
internet.info 2
keep.source TRUE
keep.source.pkgs FALSE
latexcmd /usr/bin/latex
locatorBell TRUE
mailer mailx
max.print 99999
menu.graphics TRUE
na.action na.omit
OutDec .
pager /usr/lib/R/bin/pager
papersize a4
par.ask.default FALSE
pdfviewer /usr/bin/open
pkgType source
printcmd /usr/bin/lpr
prompt >
repos _at_CRAN_at_
rl_word_breaks "\'`><=%;,|&{()}
scipen 0
show.coef.Pvalues TRUE
show.error.messages TRUE
show.signif.stars TRUE
str
strict.width no
digits.d 3
vec.len 4
stringsAsFactors TRUE
timeout 60
ts.eps 1e-05
ts.S.compat FALSE
unzip /usr/bin/unzip
verbose FALSE
warn 0
warnings.length 1000
width 80
X11colortype true
X11fonts
-adobe-helvetica-%s-%s-*-*-%d-*-*-*-*-*-*-*
-adobe-symbol-medium-r-*-*-%d-*-*-*-*-*-*-*


Sys.getenv()

_ /usr/bin/R
AWK /usr/bin/awk
COLORTERM  
COLUMNS 109
DBUS_SESSION_BUS_ADDRESS unix:abstract=/tmp/dbus-a5GuEcBU6j,guid=2e4415081a439b1a0b19d20046c07833
DESKTOP_SESSION kde
DISPLAY :0.0
DM_CONTROL /var/run/xdmctl
EDITOR vi
EGREP /bin/grep -E
GS_LIB /home/hornerj/.fonts
GTK2_RC_FILES /home/hornerj/.gtkrc-2.0-kde:/home/hornerj/.kde/share/config/gtkrc-2.0
GTK_RC_FILES /etc/gtk/gtkrc:/home/hornerj/.gtkrc:/home/hornerj/.kde/share/config/gtkrc
HOME /home/hornerj
INPUTRC /home/hornerj/.inputrc
KDE_FULL_SESSION true
KDE_MULTIHEAD false
KONSOLE_DCOP DCOPRef(konsole-25719,konsole)
KONSOLE_DCOP_SESSION DCOPRef(konsole-25719,session-1)
LANG en_US.UTF-8
LD_LIBRARY_PATH /usr/lib/R/lib::/usr/lib/j2se/1.4/jre/lib/i386/client:/usr/lib/j2se/1.4/jre/lib/i386:/usr/lib/j2se/1.4/jre/../lib/i386::/usr/lib:/lib:/usr/lib/j2se/i386:/usr/lib/jni
LINES 77
LN_S ln -s
LOGNAME hornerj
LS_COLORS no=00:fi=00:di=01;34:ln=01;36:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:su=37;41:sg=30;43:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.gz=01;31:*.bz2=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.avi=01;35:*.fli=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.flac=01;35:*.mp3=01;35:*.mpc=01;35:*.ogg=01;35:*.wav=01;35:
MAKE make
OLDPWD /home/hornerj/DISCHARGE/PROJECTA
PAGER /usr/bin/pager
PATH /home/hornerj/bin:/home/hornerj/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/bin/X11:/usr/games
PERL /usr/bin/perl
PWD /home/hornerj/brew_rforge/trunk/inst
R_ARCH  
R_BROWSER sensible-browser
R_DOC_DIR /usr/share/R/doc
R_DVIPSCMD /usr/bin/dvips
R_HISTFILE /home/hornerj/.Rhistory
R_HOME /usr/lib/R
R_INCLUDE_DIR /usr/share/R/include
R_LATEXCMD /usr/bin/latex
R_LIBS_SITE /usr/local/lib/R/site-library:/usr/lib/R/site-library:/usr/lib/R/library
R_LIBS_USER ~/R/i486-pc-linux-gnu-library/2.5
R_MAKEINDEXCMD /usr/bin/makeindex
R_PAPERSIZE letter
R_PAPERSIZE_USER a4
R_PDFVIEWER /usr/bin/open
R_PLATFORM i486-pc-linux-gnu
R_PRINTCMD /usr/bin/lpr
R_RD4DVI ae
R_RD4PDF times,hyper
R_SESSION_TMPDIR /tmp/RtmpEI2P1C
R_SHARE_DIR /usr/share/R/share
R_UNZIPCMD /usr/bin/unzip
R_USE_AQUA_SUBDIRS no
R_ZIPCMD /usr/bin/zip
SESSION_MANAGER local/biostat028:/tmp/.ICE-unix/30462
SHELL /bin/bash
SHLVL 1
SSH_AGENT_PID 30393
SSH_AUTH_SOCK /tmp/ssh-qqVJQ30347/agent.30347
TAR tar
TERM xterm
USER hornerj
WINDOWID 33554439
XCURSOR_THEME kubuntu
XDM_MANAGED /var/run/xdmctl/xdmctl-:0,maysd,mayfn,sched,rsvd,method=classic


Sys.info()

sysname Linux
release 2.6.20-16-generic
version #2 SMP Thu Jun 7 20:19:32 UTC 2007
nodename biostat028
machine i686
login unknown
user hornerj


.Machine

double.eps 2.22044604925031e-16
double.neg.eps 1.11022302462516e-16
double.xmin 2.2250738585072e-308
double.xmax 1.79769313486232e+308
double.base 2
double.digits 53
double.rounding 5
double.guard 0
double.ulp.digits -52
double.neg.ulp.digits -53
double.exponent 11
double.min.exp -1022
double.max.exp 1024
integer.max 2147483647
sizeof.long 4
sizeof.longlong 8
sizeof.longdouble 12
sizeof.pointer 4


.Platform

OS.type unix
file.sep /
dynlib.ext .so
GUI X11
endian little
pkgType source
path.sep :
r_arch  


Attached Packages

graphics

Package graphics
Version 2.5.1
Priority base
Title The R Graphics Package
Author R Development Core Team and contributors worldwide
Maintainer R Core Team <R-core_at_r-project.org>
Description R functions for base graphics
Imports grDevices
License GPL Version 2 or later.
Built R 2.5.1; ; 2007-07-19 14:31:16; unix


grDevices

Package grDevices
Version 2.5.1
Priority base
Title The R Graphics Devices and Support for Colours and Fonts
Author R Development Core Team and contributors worldwide
Maintainer R Core Team <R-core_at_r-project.org>
Description Graphics devices and support for base and grid graphics
License GPL Version 2 or later.
Built R 2.5.1; i486-pc-linux-gnu; 2007-07-19 14:31:15; unix


datasets

Package datasets
Version 2.5.1
Priority base
Title The R Datasets Package
Author R Development Core Team and contributors worldwide
Maintainer R Core Team <R-core_at_r-project.org>
Description Base R datasets
License GPL Version 2 or later.
Built R 2.5.1; ; 2007-07-19 14:31:18; unix


stats

Package stats
Version 2.5.1
Priority base
Title The R Stats Package
Author R Development Core Team and contributors worldwide
Maintainer R Core Team <R-core_at_r-project.org>
Description R statistical functions
License GPL Version 2 or later.
Built R 2.5.1; i486-pc-linux-gnu; 2007-07-19 14:31:17; unix


brew

Package brew
Type Package
Title Templating Framework for Report Generation
Version 0.1-2
Date 2007-04-16
Author Jeffrey Horner
Maintainer Jeffrey Horner <jeff.horner_at_vanderbilt.edu>
Description brew implements a templating framework for mixing text and R code for report generation. brew template syntax is similar to PHP, Ruby's erb module, Java Server Pages, and Python's psp module.
License GPL 2.0
Built R 2.5.1; ; 2007-08-20 15:33:15; unix


utils

Package utils
Version 2.5.1
Priority base
Title The R Utils Package
Author R Development Core Team and contributors worldwide
Maintainer R Core Team <R-core_at_r-project.org>
Description R utility functions
License GPL Version 2 or later.
Built R 2.5.1; ; 2007-07-19 14:31:15; unix


methods

Package methods
Version 2.5.1
Priority base
Imports utils
Title Formal Methods and Classes
Author R Development Core Team
Maintainer R Core Team <R-core_at_r-project.org>
Description Formally defined methods and classes for R objects, plus other programming tools, as described in the reference
References ``Programming with Data'' (1998), John M. Chambers, Springer NY. http://www.omegahat.org/RSMethods/Intro.ps and .../Intro.pdf
License GPL Version 2 or later.
Built R 2.5.1; i486-pc-linux-gnu; 2007-07-19 14:31:21; unix


base

Package base
Version 2.5.1
Priority base
Title The R Base Package
Author R Development Core Team and contributors worldwide
Maintainer R Core Team <R-core_at_r-project.org>
Description Base R functions
License GPL Version 2 or later.
Built R 2.5.1; ; Thu Jul 19 14:31:13 EDT 2007; unix


Installed Packages

brew

Package brew
Type Package
Title Templating Framework for Report Generation
Version 0.1-2
Date 2007-04-16
Author Jeffrey Horner
Maintainer Jeffrey Horner <jeff.horner_at_vanderbilt.edu>
Description brew implements a templating framework for mixing text and R code for report generation. brew template syntax is similar to PHP, Ruby's erb module, Java Server Pages, and Python's psp module.
License GPL 2.0
Built R 2.5.1; ; 2007-08-20 15:33:15; unix


Cairo

Package Cairo
Version 1.3-5
Title R graphics device using cairo graphics library for creating high-quality bitmap (PNG, JPEG, TIFF), vector (PDF, SVG, PostScript) and display (X11 and Win32) output.
Author Simon Urbanek <Simon.Urbanek_at_r-project.org>, Jeffrey Horner <jeff.horner_at_vanderbilt.edu>
Maintainer Simon Urbanek <Simon.Urbanek_at_r-project.org>
Depends R (>= 1.9.0)
Description This package provides a Cairo graphics device that can be use to create high-quality vector (PDF, PostScript and SVG) and bitmap output (PNG,JPEG,TIFF), and high-quality rendering in displays (X11 and Win32). Since it uses the same back-end for all output, copying across formats is WYSIWYG. Files are created without the dependence on X11 or other external programs. This device supports alpha channel (semi-transparent drawing) and resulting images can contain transparent and semi-transparent regions. It is ideal for use in server environemnts (file output) and as a replacement for other devices that don't have Cairo's capabilities such as alpha support or anti-aliasing. Backends are modular such that any subset of backends is supported.
License GPL version 2
SystemRequirements cairo (>= 1.2 http://www.cairographics.org/)
URL http://www.rforge.net/Cairo/
Built R 2.5.0; i486-pc-linux-gnu; 2007-06-26 16:04:52; unix


Hmisc

Package Hmisc
Version 3.4-2
Date 2007-5-02
Title Harrell Miscellaneous
Author Frank E Harrell Jr <f.harrell_at_vanderbilt.edu>, with contributions from many other users.
Maintainer Charles Dupont <charles.dupont_at_vanderbilt.edu>
Depends R (>= 2.4.0), methods
Imports lattice, cluster
Suggests lattice, grid, nnet, foreign, survival, chron, acepack, TeachingDemos, Design, cluster
Description The Hmisc library contains many functions useful for data analysis, high-level graphics, utility operations, functions for computing sample size and power, importing datasets, imputing missing values, advanced table making, variable clustering, character string manipulation, conversion of S objects to LaTeX code, and recoding variables. Please submit bug reports to 'http://biostat.mc.vanderbilt.edu/trac/Hmisc'.
License GPL version 2 or newer
URL http://biostat.mc.vanderbilt.edu/s/Hmisc, http://biostat.mc.vanderbilt.edu/twiki/pub/Main/RS/sintro.pdf, http://biostat.mc.vanderbilt.edu/twiki/pub/Main/StatReport/summary.pdf, http://biostat.mc.vanderbilt.edu/trac/Hmisc
Packaged Tue Jul 3 10:20:33 2007; dupontct
Built R 2.5.1; i486-pc-linux-gnu; 2007-08-06 14:10:50; unix


lattice

Package lattice
Version 0.16-2
Date 2007/07/19
Priority recommended
Title Lattice Graphics
Author Deepayan Sarkar <deepayan.sarkar_at_r-project.org>
Maintainer Deepayan Sarkar <deepayan.sarkar_at_r-project.org>
Description Implementation of Trellis Graphics. See ?Lattice for a brief introduction
Depends R (>= 2.5.0)
Suggests grid
Imports grid, grDevices, graphics, stats, utils
Enhances chron
LazyLoad yes
LazyData yes
License GPL version 2 or later
Packaged Thu Jul 19 16:59:51 2007; dsarkar
Built R 2.5.1; i486-pc-linux-gnu; 2007-08-06 14:09:52; unix


RColorBrewer

Package RColorBrewer
Version 0.2-3
Date 2005-04-16
Title ColorBrewer palettes
Author Erich Neuwirth <erich.neuwirth_at_univie.ac.at>
Maintainer Erich Neuwirth <erich.neuwirth_at_univie.ac.at>
Depends R (>= 1.7.0)
Description The packages provides palettes for drawing nice maps shaded according to a variable.
License Apache-Style Software License
Packaged Sun Apr 17 11:31:50 2005; neuwirth
Built R 2.5.0; ; 2007-06-25 16:56:52; unix


xtable

Package xtable
Version 1.4-6
Date 2007/05/21
Title Export tables to LaTeX or HTML
Author David B. Dahl <dahl_at_stat.tamu.edu> with contributions from many others
Maintainer David B. Dahl <dahl_at_stat.tamu.edu>
Description Coerce data to LaTeX and HTML tables
Depends  
License GPL version 2 or later
Packaged Mon May 21 10:51:03 2007; dahl
Built R 2.5.1; ; 2007-07-24 10:50:18; unix


brew

Package brew
Type Package
Title Templating Framework for Report Generation
Version 0.1-2
Date 2007-04-16
Author Jeffrey Horner
Maintainer Jeffrey Horner <jeff.horner_at_vanderbilt.edu>
Description brew implements a templating framework for mixing text and R code for report generation. brew template syntax is similar to PHP, Ruby's erb module, Java Server Pages, and Python's psp module.
License GPL 2.0
Built R 2.5.1; ; 2007-08-20 15:33:15; unix


mapdata

Package mapdata
Title Extra Map Databases
Version 2.0-17
Date 2005-12-20
Author Original S code by Richard A. Becker and Allan R. Wilks. R version by Ray Brownrigg <Ray.Brownrigg_at_mcs.vuw.ac.nz>
Depends R (>= 1.7.0), maps (>= 2.0-7)
Description Supplement to maps package, providing the larger and/or higher-resolution databases.
License GPL2
Maintainer Ray Brownrigg <Ray.Brownrigg_at_mcs.vuw.ac.nz>
Packaged Tue Dec 20 22:29:07 2005; ray
Built R 2.2.1; i486-pc-linux-gnu; 2006-01-12 03:10:12; unix


mapproj

Package mapproj
Title Map Projections
Version 1.1-7.1
Date 2005-04-26
Author Doug McIlroy. Packaged for R by Ray Brownrigg and Thomas P Minka.
Description Converts latitude/longitude into projected coordinates.
Depends maps
License Distribution and use for non-commercial purposes only.
Maintainer Thomas P Minka <tpminka_at_media.mit.edu>
Packaged Tue Apr 26 11:03:59 2005; hornik
Built R 2.1.0; i386-pc-linux-gnu; 2005-06-02 17:18:58; unix


maps

Package maps
Title Draw Geographical Maps
Version 2.0-32
Date 2006-09-26
Author Original S code by Richard A. Becker and Allan R. Wilks. R version by Ray Brownrigg <Ray.Brownrigg_at_mcs.vuw.ac.nz> Enhancements by Thomas P Minka <surname_at_stat.cmu.edu>
Description Display of maps. Projection code and larger maps are in separate packages (mapproj and mapdata).
Depends R (>= 1.7.0)
Suggests mapproj
License GPL2
Maintainer Ray Brownrigg <Ray.Brownrigg_at_mcs.vuw.ac.nz>
Packaged Tue Sep 26 15:24:36 2006; ray
Built R 2.3.1; i486-pc-linux-gnu; 2006-11-10 03:07:02; unix


base

Package base
Version 2.5.1
Priority base
Title The R Base Package
Author R Development Core Team and contributors worldwide
Maintainer R Core Team <R-core_at_r-project.org>
Description Base R functions
License GPL Version 2 or later.
Built R 2.5.1; ; Thu Jul 19 14:31:13 EDT 2007; unix


cluster

Package cluster
Version 1.11.7
Date 2007-06-05
Priority recommended
Author Martin Maechler, based on S original by Peter Rousseeuw <rousse_at_uia.ua.ac.be>, Anja.Struyf_at_uia.ua.ac.be and Mia.Hubert_at_uia.ua.ac.be, and initial R port by Kurt.Hornik_at_R-project.org
Maintainer Martin Maechler <maechler_at_stat.math.ethz.ch>
Title Cluster Analysis Extended Rousseeuw et al.
Description Cluster Analysis, extended original from Peter Rousseeuw, Anja Struyf and Mia Hubert.
Depends R (>= 2.2.1), stats, graphics, utils
LazyLoad yes
LazyData yes
License GPL version 2 or later
Packaged Tue Jun 5 14:44:06 2007; maechler
Built R 2.5.0; i486-pc-linux-gnu; 2007-06-06 12:10:01; unix


datasets

Package datasets
Version 2.5.1
Priority base
Title The R Datasets Package
Author R Development Core Team and contributors worldwide
Maintainer R Core Team <R-core_at_r-project.org>
Description Base R datasets
License GPL Version 2 or later.
Built R 2.5.1; ; 2007-07-19 14:31:18; unix


graphics

Package graphics
Version 2.5.1
Priority base
Title The R Graphics Package
Author R Development Core Team and contributors worldwide
Maintainer R Core Team <R-core_at_r-project.org>
Description R functions for base graphics
Imports grDevices
License GPL Version 2 or later.
Built R 2.5.1; ; 2007-07-19 14:31:16; unix


grDevices

Package grDevices
Version 2.5.1
Priority base
Title The R Graphics Devices and Support for Colours and Fonts
Author R Development Core Team and contributors worldwide
Maintainer R Core Team <R-core_at_r-project.org>
Description Graphics devices and support for base and grid graphics
License GPL Version 2 or later.
Built R 2.5.1; i486-pc-linux-gnu; 2007-07-19 14:31:15; unix


grid

Package grid
Version 2.5.1
Priority base
Title The Grid Graphics Package
Author Paul Murrell <paul_at_stat.auckland.ac.nz>
Maintainer R Core Team <R-core_at_r-project.org>
Description A rewrite of the graphics layout capabilities, plus some support for interaction
Imports grDevices
Suggests lattice
License GPL Version 2 or later.
Built R 2.5.1; i486-pc-linux-gnu; 2007-07-19 14:31:21; unix


methods

Package methods
Version 2.5.1
Priority base
Imports utils
Title Formal Methods and Classes
Author R Development Core Team
Maintainer R Core Team <R-core_at_r-project.org>
Description Formally defined methods and classes for R objects, plus other programming tools, as described in the reference
References ``Programming with Data'' (1998), John M. Chambers, Springer NY. http://www.omegahat.org/RSMethods/Intro.ps and .../Intro.pdf
License GPL Version 2 or later.
Built R 2.5.1; i486-pc-linux-gnu; 2007-07-19 14:31:21; unix


splines

Package splines
Version 2.5.1
Priority base
Imports graphics, stats
Title Regression Spline Functions and Classes
Author Douglas M. Bates <bates_at_stat.wisc.edu> and William N. Venables <Bill.Venables_at_cmis.csiro.au>
Maintainer R Core Team <R-core_at_r-project.org>
Description Regression spline functions and classes
License GPL Version 2 or later.
Built R 2.5.1; i486-pc-linux-gnu; 2007-07-19 14:31:22; unix


stats

Package stats
Version 2.5.1
Priority base
Title The R Stats Package
Author R Development Core Team and contributors worldwide
Maintainer R Core Team <R-core_at_r-project.org>
Description R statistical functions
License GPL Version 2 or later.
Built R 2.5.1; i486-pc-linux-gnu; 2007-07-19 14:31:17; unix


stats4

Package stats4
Title Statistical Functions using S4 Classes
Version 2.5.1
Priority base
Author R Development Core Team and contributors worldwide
Description Statistical Functions using S4 classes
Maintainer R Core Team <R-core_at_r-project.org>
Depends graphics, stats, methods
SaveImage yes
License GPL Version 2 or later.
Built R 2.5.1; ; 2007-07-19 14:31:23; unix


tcltk

Package tcltk
Version 2.5.1
Priority base
Title Tcl/Tk Interface
Author R Development Core Team
Maintainer R Core Team <R-core_at_r-project.org>
Description Interface and language bindings to Tcl/Tk GUI elements
License GPL Version 2 or later.
Built R 2.5.1; i486-pc-linux-gnu; 2007-07-19 14:31:23; unix


tools

Package tools
Version 2.5.1
Priority base
Title Tools for Package Development
Author Kurt Hornik and Friedrich Leisch
Maintainer R Core Team <R-core_at_r-project.org>
Description Tools for package development, administration and documentation
License GPL Version 2 or later.
Built R 2.5.1; i486-pc-linux-gnu; 2007-07-19 14:31:14; unix


utils

Package utils
Version 2.5.1
Priority base
Title The R Utils Package
Author R Development Core Team and contributors worldwide
Maintainer R Core Team <R-core_at_r-project.org>
Description R utility functions
License GPL Version 2 or later.
Built R 2.5.1; ; 2007-07-19 14:31:15; unix