#!/bin/csh

gcc -g -o reconstruction beta_distribution.c  gamma_function.c	 ln_gamma_function.c beta_function.c 	 reconstruction.c f_distribution.c     ln_beta_function.c  reconstruction_lib.c dictionary.c -lm

gcc -g -o simulate_seq_call beta_distribution.c  gamma_function.c	 ln_gamma_function.c beta_function.c 	simulate_seq_call.c f_distribution.c     ln_beta_function.c  reconstruction_lib.c dictionary.c -lm

gcc -g -o backcross beta_distribution.c  gamma_function.c	 ln_gamma_function.c beta_function.c 	 backcross.c f_distribution.c     ln_beta_function.c  reconstruction_lib.c dictionary.c -lm

gcc -g -o convert_alleles beta_distribution.c  gamma_function.c	 ln_gamma_function.c beta_function.c 	convert_alleles.c f_distribution.c     ln_beta_function.c  reconstruction_lib.c dictionary.c -lm

gcc -g -O -o genome_scan rnorm.c beta_distribution.c  gamma_function.c	 ln_gamma_function.c beta_function.c 	 genome_scan.c scan.c f_distribution.c     ln_beta_function.c  reconstruction_lib.c dictionary.c -lm

gcc -g -O -o variant_count variant_count.c dictionary.c -lm -lz
