2011-05-19 15:51:07,383 - INFO - Generating QC metrics for BAM File ['WTCHG_11728.bam']
2011-05-19 15:51:07,383 - INFO - Output will go to WTCHG_11728.qc.txt.tmp
2011-05-19 15:51:07,383 - INFO - Reading GC Map from file /data/Genomes/gcMap/Mouse37.gcMap.gz
2011-05-19 15:53:29,602 - INFO - Finished reading GC Map
2011-05-19 15:53:29,616 - INFO - Reading CDS from exon definition file /data/Genomes/annotation/Mouse37.refGene.txt.gz
2011-05-19 15:53:31,970 - INFO - Read 382138 exons (33804740 nucleotides) for 32 chromosomes
2011-05-19 15:53:31,971 - INFO - Computing coverage cut-off
2011-05-19 15:53:31,971 - INFO - Retrieving BAM file coverage info from samtools pileup
2011-05-19 15:53:38,231 - INFO - Processed 1000000 pile-up sites
2011-05-19 15:53:43,093 - INFO - Processed 2000000 pile-up sites
2011-05-19 15:53:47,981 - INFO - Processed 3000000 pile-up sites
2011-05-19 15:53:53,114 - INFO - Processed 4000000 pile-up sites
2011-05-19 15:53:58,591 - INFO - Processed 5000000 pile-up sites
2011-05-19 15:54:04,331 - INFO - Processed 6000000 pile-up sites
2011-05-19 15:54:09,473 - INFO - Processed 7000000 pile-up sites
2011-05-19 15:54:14,539 - INFO - Processed 8000000 pile-up sites
2011-05-19 15:54:20,040 - INFO - Processed 9000000 pile-up sites
2011-05-19 15:54:22,893 - INFO - Processed 10000000 pile-up sites
2011-05-19 15:54:27,034 - INFO - Processed 11000000 pile-up sites
2011-05-19 15:54:32,034 - INFO - Processed 12000000 pile-up sites
2011-05-19 15:54:35,036 - INFO - Processed 13000000 pile-up sites
2011-05-19 15:54:38,841 - INFO - Processed 14000000 pile-up sites
2011-05-19 15:54:43,462 - INFO - Processed 15000000 pile-up sites
2011-05-19 15:54:47,156 - INFO - Processed 16000000 pile-up sites
2011-05-19 15:54:52,146 - INFO - Processed 17000000 pile-up sites
2011-05-19 15:54:56,997 - INFO - Processed 18000000 pile-up sites
2011-05-19 15:55:01,720 - INFO - Processed 19000000 pile-up sites
2011-05-19 15:55:06,271 - INFO - Processed 20000000 pile-up sites
2011-05-19 15:55:10,321 - INFO - Processed 21000000 pile-up sites
2011-05-19 15:55:14,246 - INFO - Processed 22000000 pile-up sites
2011-05-19 15:55:19,619 - INFO - Processed 23000000 pile-up sites
2011-05-19 15:55:25,166 - INFO - Processed 24000000 pile-up sites
2011-05-19 15:55:30,356 - INFO - Processed 25000000 pile-up sites
2011-05-19 15:55:34,920 - INFO - Processed 26000000 pile-up sites
2011-05-19 15:55:39,816 - INFO - Processed 27000000 pile-up sites
2011-05-19 15:55:44,615 - INFO - Processed 28000000 pile-up sites
2011-05-19 15:55:49,802 - INFO - Processed 29000000 pile-up sites
2011-05-19 15:55:55,561 - INFO - Processed 30000000 pile-up sites
2011-05-19 15:56:01,119 - INFO - Processed 31000000 pile-up sites
2011-05-19 15:56:06,424 - INFO - Processed 32000000 pile-up sites
2011-05-19 15:56:11,187 - INFO - Processed 33000000 pile-up sites
2011-05-19 15:56:17,043 - INFO - Processed 34000000 pile-up sites
2011-05-19 15:56:22,964 - INFO - Processed 35000000 pile-up sites
2011-05-19 15:56:27,573 - INFO - Processed 36000000 pile-up sites
2011-05-19 15:56:33,598 - INFO - Processed 37000000 pile-up sites
2011-05-19 15:56:38,343 - INFO - Processed 38000000 pile-up sites
2011-05-19 15:56:44,095 - INFO - Processed 39000000 pile-up sites
2011-05-19 15:56:46,747 - INFO - Finished processing pile-up on 39507905 sites (200000002 nucleotides)
2011-05-19 15:56:46,747 - INFO - Coverage cut-off value is 33
2011-05-19 15:56:46,747 - INFO - Loading data into QC data manager
2011-05-19 15:56:46,893 - WARNING - Found RG tag 'SM' (value: 227) duplicated in CO field (value: 035/11) -- ignoring CO value
2011-05-19 15:56:46,893 - WARNING - Found RG tag 'ID' (value: WTCHG_11728) duplicated in CO field (value: 035/11) -- ignoring CO value
2011-05-19 15:56:46,894 - WARNING - Found RG tag 'SM' (value: 227) duplicated in CO field (value: 035/11) -- ignoring CO value
2011-05-19 15:56:46,894 - WARNING - Found RG tag 'ID' (value: WTCHG_11728) duplicated in CO field (value: 035/11) -- ignoring CO value
2011-05-19 15:56:46,894 - WARNING - Found RG tag 'SM' (value: 227) duplicated in CO field (value: 035/11) -- ignoring CO value
2011-05-19 15:56:46,894 - WARNING - Found RG tag 'ID' (value: WTCHG_11728) duplicated in CO field (value: 035/11) -- ignoring CO value
2011-05-19 15:56:46,894 - WARNING - Found RG tag 'SM' (value: 227) duplicated in CO field (value: 035/11) -- ignoring CO value
2011-05-19 15:56:46,894 - WARNING - Found RG tag 'ID' (value: WTCHG_11728) duplicated in CO field (value: 035/11) -- ignoring CO value
2011-05-19 15:56:46,945 - WARNING - Found RG tag 'SM' (value: 227) duplicated in CO field (value: 035/11) -- ignoring CO value
2011-05-19 15:56:46,946 - WARNING - Found RG tag 'ID' (value: WTCHG_11728) duplicated in CO field (value: 035/11) -- ignoring CO value
2011-05-19 15:56:46,946 - WARNING - Found RG tag 'SM' (value: 227) duplicated in CO field (value: 035/11) -- ignoring CO value
2011-05-19 15:56:46,946 - WARNING - Found RG tag 'ID' (value: WTCHG_11728) duplicated in CO field (value: 035/11) -- ignoring CO value
2011-05-19 15:56:46,946 - WARNING - Found RG tag 'SM' (value: 227) duplicated in CO field (value: 035/11) -- ignoring CO value
2011-05-19 15:56:46,946 - WARNING - Found RG tag 'ID' (value: WTCHG_11728) duplicated in CO field (value: 035/11) -- ignoring CO value
2011-05-19 15:56:46,946 - WARNING - Found RG tag 'SM' (value: 227) duplicated in CO field (value: 035/11) -- ignoring CO value
2011-05-19 15:56:46,946 - WARNING - Found RG tag 'ID' (value: WTCHG_11728) duplicated in CO field (value: 035/11) -- ignoring CO value
2011-05-19 15:56:46,955 - INFO - Reading data from BAM file WTCHG_11728.bam. All reads in file will be read
2011-05-19 15:56:47,009 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:2990014-23010014
2011-05-19 15:57:01,542 - INFO - Processed 100000 reads so far
2011-05-19 15:57:14,228 - INFO - Processed 200000 reads so far
2011-05-19 15:57:25,529 - INFO - Processed 300000 reads so far
2011-05-19 15:57:40,561 - INFO - Processed 400000 reads so far
2011-05-19 15:57:53,131 - INFO - Processed 500000 reads so far
2011-05-19 15:58:05,230 - INFO - Processed 600000 reads so far
2011-05-19 15:58:16,532 - INFO - Processed 700000 reads so far
2011-05-19 15:58:27,888 - INFO - Processed 800000 reads so far
2011-05-19 15:58:39,259 - INFO - Processed 900000 reads so far
2011-05-19 15:58:49,992 - INFO - Processed 1000000 reads so far
2011-05-19 15:58:50,945 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:22990019-43010019
2011-05-19 15:59:01,529 - INFO - Processed 1100000 reads so far
2011-05-19 15:59:12,701 - INFO - Processed 1200000 reads so far
2011-05-19 15:59:25,011 - INFO - Processed 1300000 reads so far
2011-05-19 15:59:36,335 - INFO - Processed 1400000 reads so far
2011-05-19 15:59:47,753 - INFO - Processed 1500000 reads so far
2011-05-19 15:59:59,150 - INFO - Processed 1600000 reads so far
2011-05-19 16:00:10,484 - INFO - Processed 1700000 reads so far
2011-05-19 16:00:21,799 - INFO - Processed 1800000 reads so far
2011-05-19 16:00:33,211 - INFO - Processed 1900000 reads so far
2011-05-19 16:00:39,443 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:42990026-63010026
2011-05-19 16:00:45,047 - INFO - Processed 2000000 reads so far
2011-05-19 16:00:57,532 - INFO - Processed 2100000 reads so far
2011-05-19 16:01:11,411 - INFO - Processed 2200000 reads so far
2011-05-19 16:01:24,788 - INFO - Processed 2300000 reads so far
2011-05-19 16:01:38,344 - INFO - Processed 2400000 reads so far
2011-05-19 16:01:49,392 - INFO - Processed 2500000 reads so far
2011-05-19 16:02:01,403 - INFO - Processed 2600000 reads so far
2011-05-19 16:02:11,977 - INFO - Processed 2700000 reads so far
2011-05-19 16:02:24,697 - INFO - Processed 2800000 reads so far
2011-05-19 16:02:38,573 - INFO - Processed 2900000 reads so far
2011-05-19 16:02:40,871 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:62990054-83010054
2011-05-19 16:02:50,610 - INFO - Processed 3000000 reads so far
2011-05-19 16:03:03,477 - INFO - Processed 3100000 reads so far
2011-05-19 16:03:15,270 - INFO - Processed 3200000 reads so far
2011-05-19 16:03:28,193 - INFO - Processed 3300000 reads so far
2011-05-19 16:03:40,506 - INFO - Processed 3400000 reads so far
2011-05-19 16:03:52,328 - INFO - Processed 3500000 reads so far
2011-05-19 16:04:07,635 - INFO - Processed 3600000 reads so far
2011-05-19 16:04:20,474 - INFO - Processed 3700000 reads so far
2011-05-19 16:04:33,920 - INFO - Processed 3800000 reads so far
2011-05-19 16:04:46,164 - INFO - Processed 3900000 reads so far
2011-05-19 16:04:48,609 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:82990061-103010061
2011-05-19 16:04:57,880 - INFO - Processed 4000000 reads so far
2011-05-19 16:05:10,120 - INFO - Processed 4100000 reads so far
2011-05-19 16:05:24,032 - INFO - Processed 4200000 reads so far
2011-05-19 16:05:37,340 - INFO - Processed 4300000 reads so far
2011-05-19 16:05:53,447 - INFO - Processed 4400000 reads so far
2011-05-19 16:06:06,150 - INFO - Processed 4500000 reads so far
2011-05-19 16:06:17,647 - INFO - Processed 4600000 reads so far
2011-05-19 16:06:28,724 - INFO - Processed 4700000 reads so far
2011-05-19 16:06:41,212 - INFO - Processed 4800000 reads so far
2011-05-19 16:06:52,665 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:102990072-123010072
2011-05-19 16:06:53,064 - INFO - Processed 4900000 reads so far
2011-05-19 16:07:05,557 - INFO - Processed 5000000 reads so far
2011-05-19 16:07:17,651 - INFO - Processed 5100000 reads so far
2011-05-19 16:07:30,152 - INFO - Processed 5200000 reads so far
2011-05-19 16:07:41,842 - INFO - Processed 5300000 reads so far
2011-05-19 16:07:51,916 - INFO - Processed 5400000 reads so far
2011-05-19 16:08:04,572 - INFO - Processed 5500000 reads so far
2011-05-19 16:08:17,801 - INFO - Processed 5600000 reads so far
2011-05-19 16:08:33,226 - INFO - Processed 5700000 reads so far
2011-05-19 16:09:06,488 - INFO - Processed 5800000 reads so far
2011-05-19 16:09:11,667 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:122990074-143010074
2011-05-19 16:09:18,429 - INFO - Processed 5900000 reads so far
2011-05-19 16:09:31,127 - INFO - Processed 6000000 reads so far
2011-05-19 16:09:42,316 - INFO - Processed 6100000 reads so far
2011-05-19 16:09:50,995 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:2990003-23010003
2011-05-19 16:09:53,399 - INFO - Processed 6200000 reads so far
2011-05-19 16:10:03,626 - INFO - Processed 6300000 reads so far
2011-05-19 16:10:14,258 - INFO - Processed 6400000 reads so far
2011-05-19 16:10:26,380 - INFO - Processed 6500000 reads so far
2011-05-19 16:10:39,023 - INFO - Processed 6600000 reads so far
2011-05-19 16:10:50,644 - INFO - Processed 6700000 reads so far
2011-05-19 16:11:02,799 - INFO - Processed 6800000 reads so far
2011-05-19 16:11:15,788 - INFO - Processed 6900000 reads so far
2011-05-19 16:11:29,003 - INFO - Processed 7000000 reads so far
2011-05-19 16:11:40,805 - INFO - Processed 7100000 reads so far
2011-05-19 16:11:53,463 - INFO - Processed 7200000 reads so far
2011-05-19 16:12:05,930 - INFO - Processed 7300000 reads so far
2011-05-19 16:12:08,547 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:22990015-43010015
2011-05-19 16:12:17,830 - INFO - Processed 7400000 reads so far
2011-05-19 16:12:30,584 - INFO - Processed 7500000 reads so far
2011-05-19 16:12:45,183 - INFO - Processed 7600000 reads so far
2011-05-19 16:12:58,900 - INFO - Processed 7700000 reads so far
2011-05-19 16:13:14,770 - INFO - Processed 7800000 reads so far
2011-05-19 16:13:27,006 - INFO - Processed 7900000 reads so far
2011-05-19 16:13:39,015 - INFO - Processed 8000000 reads so far
2011-05-19 16:13:51,046 - INFO - Processed 8100000 reads so far
2011-05-19 16:14:03,017 - INFO - Processed 8200000 reads so far
2011-05-19 16:14:12,365 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:42990027-63010027
2011-05-19 16:14:15,392 - INFO - Processed 8300000 reads so far
2011-05-19 16:14:27,790 - INFO - Processed 8400000 reads so far
2011-05-19 16:14:40,191 - INFO - Processed 8500000 reads so far
2011-05-19 16:14:52,130 - INFO - Processed 8600000 reads so far
2011-05-19 16:15:03,942 - INFO - Processed 8700000 reads so far
2011-05-19 16:15:15,902 - INFO - Processed 8800000 reads so far
2011-05-19 16:15:27,727 - INFO - Processed 8900000 reads so far
2011-05-19 16:15:39,270 - INFO - Processed 9000000 reads so far
2011-05-19 16:15:53,538 - INFO - Processed 9100000 reads so far
2011-05-19 16:16:06,061 - INFO - Processed 9200000 reads so far
2011-05-19 16:16:18,776 - INFO - Processed 9300000 reads so far
2011-05-19 16:16:19,812 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:62990030-83010030
2011-05-19 16:16:31,695 - INFO - Processed 9400000 reads so far
2011-05-19 16:16:41,207 - INFO - Processed 9500000 reads so far
2011-05-19 16:17:18,512 - INFO - Processed 9600000 reads so far
2011-05-19 16:17:29,127 - INFO - Processed 9700000 reads so far
2011-05-19 16:17:40,436 - INFO - Processed 9800000 reads so far
2011-05-19 16:17:53,744 - INFO - Processed 9900000 reads so far
2011-05-19 16:18:05,982 - INFO - Processed 10000000 reads so far
2011-05-19 16:18:17,901 - INFO - Processed 10100000 reads so far
2011-05-19 16:18:29,640 - INFO - Processed 10200000 reads so far
2011-05-19 16:18:44,432 - INFO - Processed 10300000 reads so far
2011-05-19 16:18:49,901 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:82990049-103010049
2011-05-19 16:18:57,197 - INFO - Processed 10400000 reads so far
2011-05-19 16:19:09,066 - INFO - Processed 10500000 reads so far
2011-05-19 16:19:18,981 - INFO - Processed 10600000 reads so far
2011-05-19 16:19:28,951 - INFO - Processed 10700000 reads so far
2011-05-19 16:19:40,020 - INFO - Processed 10800000 reads so far
2011-05-19 16:19:49,634 - INFO - Processed 10900000 reads so far
2011-05-19 16:19:59,461 - INFO - Processed 11000000 reads so far
2011-05-19 16:20:10,946 - INFO - Processed 11100000 reads so far
2011-05-19 16:20:21,358 - INFO - Processed 11200000 reads so far
2011-05-19 16:20:32,826 - INFO - Processed 11300000 reads so far
2011-05-19 16:20:36,392 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:102990096-123010096
2011-05-19 16:20:43,126 - INFO - Processed 11400000 reads so far
2011-05-19 16:20:56,021 - INFO - Processed 11500000 reads so far
2011-05-19 16:21:06,125 - INFO - Processed 11600000 reads so far
2011-05-19 16:21:18,841 - INFO - Processed 11700000 reads so far
2011-05-19 16:21:30,483 - INFO - Processed 11800000 reads so far
2011-05-19 16:21:42,799 - INFO - Processed 11900000 reads so far
2011-05-19 16:21:54,544 - INFO - Processed 12000000 reads so far
2011-05-19 16:22:05,709 - INFO - Processed 12100000 reads so far
2011-05-19 16:22:14,979 - INFO - Processed 12200000 reads so far
2011-05-19 16:22:28,048 - INFO - Processed 12300000 reads so far
2011-05-19 16:22:31,760 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:2990005-23010005
2011-05-19 16:22:39,944 - INFO - Processed 12400000 reads so far
2011-05-19 16:22:50,957 - INFO - Processed 12500000 reads so far
2011-05-19 16:23:00,823 - INFO - Processed 12600000 reads so far
2011-05-19 16:23:09,477 - INFO - Processed 12700000 reads so far
2011-05-19 16:23:20,588 - INFO - Processed 12800000 reads so far
2011-05-19 16:23:31,924 - INFO - Processed 12900000 reads so far
2011-05-19 16:23:44,389 - INFO - Processed 13000000 reads so far
2011-05-19 16:23:54,402 - INFO - Processed 13100000 reads so far
2011-05-19 16:24:06,013 - INFO - Processed 13200000 reads so far
2011-05-19 16:24:17,933 - INFO - Processed 13300000 reads so far
2011-05-19 16:24:22,861 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:22990198-43010198
2011-05-19 16:24:30,587 - INFO - Processed 13400000 reads so far
2011-05-19 16:24:41,441 - INFO - Processed 13500000 reads so far
2011-05-19 16:24:52,431 - INFO - Processed 13600000 reads so far
2011-05-19 16:25:04,246 - INFO - Processed 13700000 reads so far
2011-05-19 16:25:17,015 - INFO - Processed 13800000 reads so far
2011-05-19 16:25:29,565 - INFO - Processed 13900000 reads so far
2011-05-19 16:25:41,065 - INFO - Processed 14000000 reads so far
2011-05-19 16:25:52,783 - INFO - Processed 14100000 reads so far
2011-05-19 16:26:04,826 - INFO - Processed 14200000 reads so far
2011-05-19 16:26:10,189 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:42990222-63010222
2011-05-19 16:26:16,950 - INFO - Processed 14300000 reads so far
2011-05-19 16:26:28,408 - INFO - Processed 14400000 reads so far
2011-05-19 16:26:39,822 - INFO - Processed 14500000 reads so far
2011-05-19 16:26:51,269 - INFO - Processed 14600000 reads so far
2011-05-19 16:27:04,984 - INFO - Processed 14700000 reads so far
2011-05-19 16:27:18,536 - INFO - Processed 14800000 reads so far
2011-05-19 16:27:31,292 - INFO - Processed 14900000 reads so far
2011-05-19 16:27:40,510 - INFO - Processed 15000000 reads so far
2011-05-19 16:27:54,361 - INFO - Processed 15100000 reads so far
2011-05-19 16:28:01,901 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:62990295-83010295
2011-05-19 16:28:06,874 - INFO - Processed 15200000 reads so far
2011-05-19 16:28:21,091 - INFO - Processed 15300000 reads so far
2011-05-19 16:28:39,261 - INFO - Processed 15400000 reads so far
2011-05-19 16:28:53,526 - INFO - Processed 15500000 reads so far
2011-05-19 16:29:06,693 - INFO - Processed 15600000 reads so far
2011-05-19 16:29:22,362 - INFO - Processed 15700000 reads so far
2011-05-19 16:29:35,842 - INFO - Processed 15800000 reads so far
2011-05-19 16:29:50,366 - INFO - Processed 15900000 reads so far
2011-05-19 16:30:02,287 - INFO - Processed 16000000 reads so far
2011-05-19 16:30:15,471 - INFO - Processed 16100000 reads so far
2011-05-19 16:30:18,249 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:82990318-103010318
2011-05-19 16:30:28,152 - INFO - Processed 16200000 reads so far
2011-05-19 16:30:40,320 - INFO - Processed 16300000 reads so far
2011-05-19 16:30:53,123 - INFO - Processed 16400000 reads so far
2011-05-19 16:31:05,994 - INFO - Processed 16500000 reads so far
2011-05-19 16:31:17,322 - INFO - Processed 16600000 reads so far
2011-05-19 16:31:38,115 - INFO - Processed 16700000 reads so far
2011-05-19 16:31:51,030 - INFO - Processed 16800000 reads so far
2011-05-19 16:32:03,646 - INFO - Processed 16900000 reads so far
2011-05-19 16:32:20,142 - INFO - Processed 17000000 reads so far
2011-05-19 16:32:34,337 - INFO - Processed 17100000 reads so far
2011-05-19 16:32:35,853 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:102990328-123010328
2011-05-19 16:32:48,362 - INFO - Processed 17200000 reads so far
2011-05-19 16:32:59,699 - INFO - Processed 17300000 reads so far
2011-05-19 16:33:10,350 - INFO - Processed 17400000 reads so far
2011-05-19 16:33:21,310 - INFO - Processed 17500000 reads so far
2011-05-19 16:33:34,774 - INFO - Processed 17600000 reads so far
2011-05-19 16:33:45,561 - INFO - Processed 17700000 reads so far
2011-05-19 16:33:57,303 - INFO - Processed 17800000 reads so far
2011-05-19 16:34:15,945 - INFO - Processed 17900000 reads so far
2011-05-19 16:34:28,671 - INFO - Processed 18000000 reads so far
2011-05-19 16:34:39,866 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:2990083-23010083
2011-05-19 16:34:40,183 - INFO - Processed 18100000 reads so far
2011-05-19 16:34:51,853 - INFO - Processed 18200000 reads so far
2011-05-19 16:35:03,634 - INFO - Processed 18300000 reads so far
2011-05-19 16:35:15,032 - INFO - Processed 18400000 reads so far
2011-05-19 16:35:26,714 - INFO - Processed 18500000 reads so far
2011-05-19 16:35:37,572 - INFO - Processed 18600000 reads so far
2011-05-19 16:35:48,831 - INFO - Processed 18700000 reads so far
2011-05-19 16:35:59,233 - INFO - Processed 18800000 reads so far
2011-05-19 16:36:09,640 - INFO - Processed 18900000 reads so far
2011-05-19 16:36:20,819 - INFO - Processed 19000000 reads so far
2011-05-19 16:36:23,368 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:22990108-43010108
2011-05-19 16:36:29,586 - INFO - Processed 19100000 reads so far
2011-05-19 16:36:38,191 - INFO - Processed 19200000 reads so far
2011-05-19 16:36:48,074 - INFO - Processed 19300000 reads so far
2011-05-19 16:36:57,488 - INFO - Processed 19400000 reads so far
2011-05-19 16:37:08,745 - INFO - Processed 19500000 reads so far
2011-05-19 16:37:21,187 - INFO - Processed 19600000 reads so far
2011-05-19 16:37:32,668 - INFO - Processed 19700000 reads so far
2011-05-19 16:37:44,241 - INFO - Processed 19800000 reads so far
2011-05-19 16:37:57,040 - INFO - Processed 19900000 reads so far
2011-05-19 16:38:09,643 - INFO - Processed 20000000 reads so far
2011-05-19 16:38:12,739 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:42990114-63010114
2011-05-19 16:38:26,665 - INFO - Processed 20100000 reads so far
2011-05-19 16:39:01,650 - INFO - Processed 20200000 reads so far
2011-05-19 16:40:21,722 - INFO - Processed 20300000 reads so far
2011-05-19 16:40:34,235 - INFO - Processed 20400000 reads so far
2011-05-19 16:40:46,721 - INFO - Processed 20500000 reads so far
2011-05-19 16:40:58,874 - INFO - Processed 20600000 reads so far
2011-05-19 16:41:10,761 - INFO - Processed 20700000 reads so far
2011-05-19 16:41:24,458 - INFO - Processed 20800000 reads so far
2011-05-19 16:41:35,952 - INFO - Processed 20900000 reads so far
2011-05-19 16:41:47,034 - INFO - Processed 21000000 reads so far
2011-05-19 16:41:55,550 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:62990132-83010132
2011-05-19 16:41:59,727 - INFO - Processed 21100000 reads so far
2011-05-19 16:42:11,496 - INFO - Processed 21200000 reads so far
2011-05-19 16:42:24,064 - INFO - Processed 21300000 reads so far
2011-05-19 16:42:33,995 - INFO - Processed 21400000 reads so far
2011-05-19 16:42:43,497 - INFO - Processed 21500000 reads so far
2011-05-19 16:42:58,062 - INFO - Processed 21600000 reads so far
2011-05-19 16:43:11,742 - INFO - Processed 21700000 reads so far
2011-05-19 16:43:26,102 - INFO - Processed 21800000 reads so far
2011-05-19 16:43:37,576 - INFO - Processed 21900000 reads so far
2011-05-19 16:43:47,227 - INFO - Processed 22000000 reads so far
2011-05-19 16:43:55,447 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:82990143-103010143
2011-05-19 16:43:58,963 - INFO - Processed 22100000 reads so far
2011-05-19 16:44:15,839 - INFO - Processed 22200000 reads so far
2011-05-19 16:44:30,039 - INFO - Processed 22300000 reads so far
2011-05-19 16:44:41,904 - INFO - Processed 22400000 reads so far
2011-05-19 16:45:01,050 - INFO - Processed 22500000 reads so far
2011-05-19 16:45:13,843 - INFO - Processed 22600000 reads so far
2011-05-19 16:45:27,864 - INFO - Processed 22700000 reads so far
2011-05-19 16:45:40,162 - INFO - Processed 22800000 reads so far
2011-05-19 16:45:53,138 - INFO - Processed 22900000 reads so far
2011-05-19 16:46:04,213 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:102990190-123010190
2011-05-19 16:46:04,463 - INFO - Processed 23000000 reads so far
2011-05-19 16:46:20,159 - INFO - Processed 23100000 reads so far
2011-05-19 16:46:36,782 - INFO - Processed 23200000 reads so far
2011-05-19 16:46:51,154 - INFO - Processed 23300000 reads so far
2011-05-19 16:47:03,439 - INFO - Processed 23400000 reads so far
2011-05-19 16:47:14,484 - INFO - Processed 23500000 reads so far
2011-05-19 16:47:25,587 - INFO - Processed 23600000 reads so far
2011-05-19 16:47:38,114 - INFO - Processed 23700000 reads so far
2011-05-19 16:47:49,911 - INFO - Processed 23800000 reads so far
2011-05-19 16:47:55,113 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13_random:0-20010000
2011-05-19 16:47:56,357 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:2990027-23010027
2011-05-19 16:48:07,230 - INFO - Processed 23900000 reads so far
2011-05-19 16:48:19,170 - INFO - Processed 24000000 reads so far
2011-05-19 16:48:32,222 - INFO - Processed 24100000 reads so far
2011-05-19 16:48:40,756 - INFO - Processed 24200000 reads so far
2011-05-19 16:48:50,485 - INFO - Processed 24300000 reads so far
2011-05-19 16:48:59,469 - INFO - Processed 24400000 reads so far
2011-05-19 16:49:10,499 - INFO - Processed 24500000 reads so far
2011-05-19 16:49:26,077 - INFO - Processed 24600000 reads so far
2011-05-19 16:49:36,643 - INFO - Processed 24700000 reads so far
2011-05-19 16:49:47,920 - INFO - Processed 24800000 reads so far
2011-05-19 16:49:49,427 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:22990029-43010029
2011-05-19 16:49:59,174 - INFO - Processed 24900000 reads so far
2011-05-19 16:50:11,449 - INFO - Processed 25000000 reads so far
2011-05-19 16:50:23,899 - INFO - Processed 25100000 reads so far
2011-05-19 16:50:35,226 - INFO - Processed 25200000 reads so far
2011-05-19 16:50:46,684 - INFO - Processed 25300000 reads so far
2011-05-19 16:50:58,837 - INFO - Processed 25400000 reads so far
2011-05-19 16:51:09,535 - INFO - Processed 25500000 reads so far
2011-05-19 16:51:21,337 - INFO - Processed 25600000 reads so far
2011-05-19 16:51:32,746 - INFO - Processed 25700000 reads so far
2011-05-19 16:51:44,585 - INFO - Processed 25800000 reads so far
2011-05-19 16:51:48,351 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:42990058-63010058
2011-05-19 16:51:54,818 - INFO - Processed 25900000 reads so far
2011-05-19 16:52:06,844 - INFO - Processed 26000000 reads so far
2011-05-19 16:52:17,649 - INFO - Processed 26100000 reads so far
2011-05-19 16:52:33,439 - INFO - Processed 26200000 reads so far
2011-05-19 16:52:44,454 - INFO - Processed 26300000 reads so far
2011-05-19 16:53:00,527 - INFO - Processed 26400000 reads so far
2011-05-19 16:53:14,629 - INFO - Processed 26500000 reads so far
2011-05-19 16:53:25,480 - INFO - Processed 26600000 reads so far
2011-05-19 16:53:42,792 - INFO - Processed 26700000 reads so far
2011-05-19 16:53:59,178 - INFO - Processed 26800000 reads so far
2011-05-19 16:54:05,304 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:62990064-83010064
2011-05-19 16:54:13,596 - INFO - Processed 26900000 reads so far
2011-05-19 16:54:24,682 - INFO - Processed 27000000 reads so far
2011-05-19 16:54:36,881 - INFO - Processed 27100000 reads so far
2011-05-19 16:54:52,773 - INFO - Processed 27200000 reads so far
2011-05-19 16:55:04,006 - INFO - Processed 27300000 reads so far
2011-05-19 16:55:15,472 - INFO - Processed 27400000 reads so far
2011-05-19 16:55:26,858 - INFO - Processed 27500000 reads so far
2011-05-19 16:55:38,202 - INFO - Processed 27600000 reads so far
2011-05-19 16:55:51,224 - INFO - Processed 27700000 reads so far
2011-05-19 16:56:03,975 - INFO - Processed 27800000 reads so far
2011-05-19 16:56:09,996 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:82990157-103010157
2011-05-19 16:56:18,820 - INFO - Processed 27900000 reads so far
2011-05-19 16:56:31,491 - INFO - Processed 28000000 reads so far
2011-05-19 16:56:43,217 - INFO - Processed 28100000 reads so far
2011-05-19 16:56:55,727 - INFO - Processed 28200000 reads so far
2011-05-19 16:57:07,245 - INFO - Processed 28300000 reads so far
2011-05-19 16:57:19,576 - INFO - Processed 28400000 reads so far
2011-05-19 16:57:31,885 - INFO - Processed 28500000 reads so far
2011-05-19 16:57:46,837 - INFO - Processed 28600000 reads so far
2011-05-19 16:57:58,087 - INFO - Processed 28700000 reads so far
2011-05-19 16:58:00,108 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:102990167-123010167
2011-05-19 16:58:11,002 - INFO - Processed 28800000 reads so far
2011-05-19 16:58:22,234 - INFO - Processed 28900000 reads so far
2011-05-19 16:58:34,450 - INFO - Processed 29000000 reads so far
2011-05-19 16:58:46,682 - INFO - Processed 29100000 reads so far
2011-05-19 16:58:59,425 - INFO - Processed 29200000 reads so far
2011-05-19 16:59:11,712 - INFO - Processed 29300000 reads so far
2011-05-19 16:59:23,001 - INFO - Processed 29400000 reads so far
2011-05-19 16:59:35,611 - INFO - Processed 29500000 reads so far
2011-05-19 16:59:47,443 - INFO - Processed 29600000 reads so far
2011-05-19 16:59:52,273 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:122990176-143010176
2011-05-19 17:00:00,172 - INFO - Processed 29700000 reads so far
2011-05-19 17:00:06,709 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:2990000-23010000
2011-05-19 17:00:13,024 - INFO - Processed 29800000 reads so far
2011-05-19 17:00:24,425 - INFO - Processed 29900000 reads so far
2011-05-19 17:00:37,039 - INFO - Processed 30000000 reads so far
2011-05-19 17:00:47,415 - INFO - Processed 30100000 reads so far
2011-05-19 17:01:00,235 - INFO - Processed 30200000 reads so far
2011-05-19 17:01:15,426 - INFO - Processed 30300000 reads so far
2011-05-19 17:01:33,014 - INFO - Processed 30400000 reads so far
2011-05-19 17:01:46,063 - INFO - Processed 30500000 reads so far
2011-05-19 17:01:59,668 - INFO - Processed 30600000 reads so far
2011-05-19 17:02:08,652 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:22990006-43010006
2011-05-19 17:02:13,946 - INFO - Processed 30700000 reads so far
2011-05-19 17:02:25,588 - INFO - Processed 30800000 reads so far
2011-05-19 17:02:37,389 - INFO - Processed 30900000 reads so far
2011-05-19 17:02:48,824 - INFO - Processed 31000000 reads so far
2011-05-19 17:03:00,041 - INFO - Processed 31100000 reads so far
2011-05-19 17:03:10,964 - INFO - Processed 31200000 reads so far
2011-05-19 17:03:23,444 - INFO - Processed 31300000 reads so far
2011-05-19 17:03:37,645 - INFO - Processed 31400000 reads so far
2011-05-19 17:03:53,719 - INFO - Processed 31500000 reads so far
2011-05-19 17:04:07,704 - INFO - Processed 31600000 reads so far
2011-05-19 17:04:11,917 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:42990032-63010032
2011-05-19 17:04:19,019 - INFO - Processed 31700000 reads so far
2011-05-19 17:04:30,694 - INFO - Processed 31800000 reads so far
2011-05-19 17:04:42,948 - INFO - Processed 31900000 reads so far
2011-05-19 17:04:58,584 - INFO - Processed 32000000 reads so far
2011-05-19 17:05:10,212 - INFO - Processed 32100000 reads so far
2011-05-19 17:05:20,415 - INFO - Processed 32200000 reads so far
2011-05-19 17:05:30,791 - INFO - Processed 32300000 reads so far
2011-05-19 17:05:43,299 - INFO - Processed 32400000 reads so far
2011-05-19 17:05:55,788 - INFO - Processed 32500000 reads so far
2011-05-19 17:06:08,473 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:62990133-83010133
2011-05-19 17:06:10,703 - INFO - Processed 32600000 reads so far
2011-05-19 17:06:24,084 - INFO - Processed 32700000 reads so far
2011-05-19 17:06:34,420 - INFO - Processed 32800000 reads so far
2011-05-19 17:06:45,864 - INFO - Processed 32900000 reads so far
2011-05-19 17:06:57,490 - INFO - Processed 33000000 reads so far
2011-05-19 17:07:10,437 - INFO - Processed 33100000 reads so far
2011-05-19 17:07:22,827 - INFO - Processed 33200000 reads so far
2011-05-19 17:07:35,775 - INFO - Processed 33300000 reads so far
2011-05-19 17:07:47,724 - INFO - Processed 33400000 reads so far
2011-05-19 17:08:02,836 - INFO - Processed 33500000 reads so far
2011-05-19 17:08:16,667 - INFO - Processed 33600000 reads so far
2011-05-19 17:08:21,496 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:82990154-103010154
2011-05-19 17:08:27,504 - INFO - Processed 33700000 reads so far
2011-05-19 17:08:38,245 - INFO - Processed 33800000 reads so far
2011-05-19 17:08:50,035 - INFO - Processed 33900000 reads so far
2011-05-19 17:09:00,864 - INFO - Processed 34000000 reads so far
2011-05-19 17:09:13,615 - INFO - Processed 34100000 reads so far
2011-05-19 17:09:24,605 - INFO - Processed 34200000 reads so far
2011-05-19 17:09:35,911 - INFO - Processed 34300000 reads so far
2011-05-19 17:09:48,739 - INFO - Processed 34400000 reads so far
2011-05-19 17:10:02,289 - INFO - Processed 34500000 reads so far
2011-05-19 17:10:14,075 - INFO - Processed 34600000 reads so far
2011-05-19 17:10:24,512 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:102990176-123010176
2011-05-19 17:10:25,356 - INFO - Processed 34700000 reads so far
2011-05-19 17:10:27,516 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:2990026-23010026
2011-05-19 17:10:37,851 - INFO - Processed 34800000 reads so far
2011-05-19 17:10:50,342 - INFO - Processed 34900000 reads so far
2011-05-19 17:11:01,078 - INFO - Processed 35000000 reads so far
2011-05-19 17:11:13,779 - INFO - Processed 35100000 reads so far
2011-05-19 17:11:24,844 - INFO - Processed 35200000 reads so far
2011-05-19 17:11:36,545 - INFO - Processed 35300000 reads so far
2011-05-19 17:11:46,747 - INFO - Processed 35400000 reads so far
2011-05-19 17:12:00,766 - INFO - Processed 35500000 reads so far
2011-05-19 17:12:11,741 - INFO - Processed 35600000 reads so far
2011-05-19 17:12:23,573 - INFO - Processed 35700000 reads so far
2011-05-19 17:12:36,306 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:22990031-43010031
2011-05-19 17:12:37,701 - INFO - Processed 35800000 reads so far
2011-05-19 17:12:49,384 - INFO - Processed 35900000 reads so far
2011-05-19 17:13:03,088 - INFO - Processed 36000000 reads so far
2011-05-19 17:13:15,130 - INFO - Processed 36100000 reads so far
2011-05-19 17:13:28,418 - INFO - Processed 36200000 reads so far
2011-05-19 17:13:43,671 - INFO - Processed 36300000 reads so far
2011-05-19 17:13:57,544 - INFO - Processed 36400000 reads so far
2011-05-19 17:14:10,630 - INFO - Processed 36500000 reads so far
2011-05-19 17:14:25,221 - INFO - Processed 36600000 reads so far
2011-05-19 17:14:37,787 - INFO - Processed 36700000 reads so far
2011-05-19 17:14:46,713 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:42990058-63010058
2011-05-19 17:14:50,822 - INFO - Processed 36800000 reads so far
2011-05-19 17:15:05,992 - INFO - Processed 36900000 reads so far
2011-05-19 17:15:19,167 - INFO - Processed 37000000 reads so far
2011-05-19 17:15:30,064 - INFO - Processed 37100000 reads so far
2011-05-19 17:15:40,457 - INFO - Processed 37200000 reads so far
2011-05-19 17:15:51,626 - INFO - Processed 37300000 reads so far
2011-05-19 17:16:03,281 - INFO - Processed 37400000 reads so far
2011-05-19 17:16:14,187 - INFO - Processed 37500000 reads so far
2011-05-19 17:16:29,976 - INFO - Processed 37600000 reads so far
2011-05-19 17:16:43,006 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:62990072-83010072
2011-05-19 17:16:44,015 - INFO - Processed 37700000 reads so far
2011-05-19 17:16:55,528 - INFO - Processed 37800000 reads so far
2011-05-19 17:17:07,438 - INFO - Processed 37900000 reads so far
2011-05-19 17:17:18,773 - INFO - Processed 38000000 reads so far
2011-05-19 17:17:30,541 - INFO - Processed 38100000 reads so far
2011-05-19 17:17:44,879 - INFO - Processed 38200000 reads so far
2011-05-19 17:17:56,448 - INFO - Processed 38300000 reads so far
2011-05-19 17:18:10,459 - INFO - Processed 38400000 reads so far
2011-05-19 17:18:24,481 - INFO - Processed 38500000 reads so far
2011-05-19 17:18:35,449 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:82990092-103010092
2011-05-19 17:18:37,925 - INFO - Processed 38600000 reads so far
2011-05-19 17:18:50,230 - INFO - Processed 38700000 reads so far
2011-05-19 17:19:02,722 - INFO - Processed 38800000 reads so far
2011-05-19 17:19:15,454 - INFO - Processed 38900000 reads so far
2011-05-19 17:19:30,345 - INFO - Processed 39000000 reads so far
2011-05-19 17:19:42,864 - INFO - Processed 39100000 reads so far
2011-05-19 17:19:56,113 - INFO - Processed 39200000 reads so far
2011-05-19 17:20:06,935 - INFO - Processed 39300000 reads so far
2011-05-19 17:20:12,086 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16_random:0-20010416
2011-05-19 17:20:12,112 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:2990000-23010000
2011-05-19 17:20:17,264 - INFO - Processed 39400000 reads so far
2011-05-19 17:20:32,284 - INFO - Processed 39500000 reads so far
2011-05-19 17:20:44,589 - INFO - Processed 39600000 reads so far
2011-05-19 17:20:56,290 - INFO - Processed 39700000 reads so far
2011-05-19 17:21:10,153 - INFO - Processed 39800000 reads so far
2011-05-19 17:21:22,014 - INFO - Processed 39900000 reads so far
2011-05-19 17:21:34,219 - INFO - Processed 40000000 reads so far
2011-05-19 17:21:46,229 - INFO - Processed 40100000 reads so far
2011-05-19 17:21:59,792 - INFO - Processed 40200000 reads so far
2011-05-19 17:22:15,356 - INFO - Processed 40300000 reads so far
2011-05-19 17:22:25,265 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:22990025-43010025
2011-05-19 17:22:27,018 - INFO - Processed 40400000 reads so far
2011-05-19 17:22:40,283 - INFO - Processed 40500000 reads so far
2011-05-19 17:22:52,625 - INFO - Processed 40600000 reads so far
2011-05-19 17:23:05,188 - INFO - Processed 40700000 reads so far
2011-05-19 17:23:20,615 - INFO - Processed 40800000 reads so far
2011-05-19 17:23:34,698 - INFO - Processed 40900000 reads so far
2011-05-19 17:23:47,500 - INFO - Processed 41000000 reads so far
2011-05-19 17:24:02,096 - INFO - Processed 41100000 reads so far
2011-05-19 17:24:12,743 - INFO - Processed 41200000 reads so far
2011-05-19 17:24:23,156 - INFO - Processed 41300000 reads so far
2011-05-19 17:24:36,984 - INFO - Processed 41400000 reads so far
2011-05-19 17:24:44,886 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:42990077-63010077
2011-05-19 17:24:48,177 - INFO - Processed 41500000 reads so far
2011-05-19 17:25:00,490 - INFO - Processed 41600000 reads so far
2011-05-19 17:25:15,564 - INFO - Processed 41700000 reads so far
2011-05-19 17:25:28,192 - INFO - Processed 41800000 reads so far
2011-05-19 17:25:44,605 - INFO - Processed 41900000 reads so far
2011-05-19 17:25:58,187 - INFO - Processed 42000000 reads so far
2011-05-19 17:26:09,072 - INFO - Processed 42100000 reads so far
2011-05-19 17:26:20,339 - INFO - Processed 42200000 reads so far
2011-05-19 17:26:30,948 - INFO - Processed 42300000 reads so far
2011-05-19 17:26:42,288 - INFO - Processed 42400000 reads so far
2011-05-19 17:26:48,117 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:62990087-83010087
2011-05-19 17:26:54,763 - INFO - Processed 42500000 reads so far
2011-05-19 17:27:08,741 - INFO - Processed 42600000 reads so far
2011-05-19 17:27:20,585 - INFO - Processed 42700000 reads so far
2011-05-19 17:27:31,935 - INFO - Processed 42800000 reads so far
2011-05-19 17:27:43,227 - INFO - Processed 42900000 reads so far
2011-05-19 17:27:54,380 - INFO - Processed 43000000 reads so far
2011-05-19 17:28:05,731 - INFO - Processed 43100000 reads so far
2011-05-19 17:28:16,411 - INFO - Processed 43200000 reads so far
2011-05-19 17:28:28,674 - INFO - Processed 43300000 reads so far
2011-05-19 17:28:40,228 - INFO - Processed 43400000 reads so far
2011-05-19 17:28:43,145 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:82990188-103010188
2011-05-19 17:28:49,845 - INFO - Processed 43500000 reads so far
2011-05-19 17:28:59,382 - INFO - Processed 43600000 reads so far
2011-05-19 17:29:13,016 - INFO - Processed 43700000 reads so far
2011-05-19 17:29:26,357 - INFO - Processed 43800000 reads so far
2011-05-19 17:29:38,032 - INFO - Processed 43900000 reads so far
2011-05-19 17:29:51,581 - INFO - Processed 44000000 reads so far
2011-05-19 17:29:54,454 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17_random:0-20010055
2011-05-19 17:29:56,470 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:2990003-23010003
2011-05-19 17:30:03,641 - INFO - Processed 44100000 reads so far
2011-05-19 17:30:13,348 - INFO - Processed 44200000 reads so far
2011-05-19 17:30:26,086 - INFO - Processed 44300000 reads so far
2011-05-19 17:30:38,829 - INFO - Processed 44400000 reads so far
2011-05-19 17:30:50,145 - INFO - Processed 44500000 reads so far
2011-05-19 17:31:05,149 - INFO - Processed 44600000 reads so far
2011-05-19 17:31:18,268 - INFO - Processed 44700000 reads so far
2011-05-19 17:31:33,690 - INFO - Processed 44800000 reads so far
2011-05-19 17:31:43,962 - INFO - Processed 44900000 reads so far
2011-05-19 17:31:53,932 - INFO - Processed 45000000 reads so far
2011-05-19 17:31:56,379 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:22990015-43010015
2011-05-19 17:32:05,481 - INFO - Processed 45100000 reads so far
2011-05-19 17:32:16,202 - INFO - Processed 45200000 reads so far
2011-05-19 17:32:26,385 - INFO - Processed 45300000 reads so far
2011-05-19 17:32:35,821 - INFO - Processed 45400000 reads so far
2011-05-19 17:32:52,247 - INFO - Processed 45500000 reads so far
2011-05-19 17:33:03,592 - INFO - Processed 45600000 reads so far
2011-05-19 17:33:16,650 - INFO - Processed 45700000 reads so far
2011-05-19 17:33:28,567 - INFO - Processed 45800000 reads so far
2011-05-19 17:33:39,227 - INFO - Processed 45900000 reads so far
2011-05-19 17:33:51,176 - INFO - Processed 46000000 reads so far
2011-05-19 17:33:52,101 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:42990017-63010017
2011-05-19 17:34:02,609 - INFO - Processed 46100000 reads so far
2011-05-19 17:34:16,806 - INFO - Processed 46200000 reads so far
2011-05-19 17:34:29,670 - INFO - Processed 46300000 reads so far
2011-05-19 17:34:41,742 - INFO - Processed 46400000 reads so far
2011-05-19 17:34:53,982 - INFO - Processed 46500000 reads so far
2011-05-19 17:35:07,861 - INFO - Processed 46600000 reads so far
2011-05-19 17:35:19,557 - INFO - Processed 46700000 reads so far
2011-05-19 17:35:30,338 - INFO - Processed 46800000 reads so far
2011-05-19 17:35:42,371 - INFO - Processed 46900000 reads so far
2011-05-19 17:35:50,442 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:62990060-83010060
2011-05-19 17:35:53,137 - INFO - Processed 47000000 reads so far
2011-05-19 17:36:04,494 - INFO - Processed 47100000 reads so far
2011-05-19 17:36:18,723 - INFO - Processed 47200000 reads so far
2011-05-19 17:36:28,195 - INFO - Processed 47300000 reads so far
2011-05-19 17:36:38,520 - INFO - Processed 47400000 reads so far
2011-05-19 17:36:50,637 - INFO - Processed 47500000 reads so far
2011-05-19 17:37:03,766 - INFO - Processed 47600000 reads so far
2011-05-19 17:37:13,462 - INFO - Processed 47700000 reads so far
2011-05-19 17:37:25,009 - INFO - Processed 47800000 reads so far
2011-05-19 17:37:35,665 - INFO - Processed 47900000 reads so far
2011-05-19 17:37:44,527 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:82990074-103010074
2011-05-19 17:37:47,692 - INFO - Processed 48000000 reads so far
2011-05-19 17:38:00,677 - INFO - Processed 48100000 reads so far
2011-05-19 17:38:11,068 - INFO - Processed 48200000 reads so far
2011-05-19 17:38:25,244 - INFO - Processed 48300000 reads so far
2011-05-19 17:38:30,510 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:2990053-23010053
2011-05-19 17:38:42,053 - INFO - Processed 48400000 reads so far
2011-05-19 17:38:56,072 - INFO - Processed 48500000 reads so far
2011-05-19 17:39:05,917 - INFO - Processed 48600000 reads so far
2011-05-19 17:39:22,303 - INFO - Processed 48700000 reads so far
2011-05-19 17:39:33,441 - INFO - Processed 48800000 reads so far
2011-05-19 17:39:44,290 - INFO - Processed 48900000 reads so far
2011-05-19 17:39:55,712 - INFO - Processed 49000000 reads so far
2011-05-19 17:40:07,866 - INFO - Processed 49100000 reads so far
2011-05-19 17:40:18,682 - INFO - Processed 49200000 reads so far
2011-05-19 17:40:32,534 - INFO - Processed 49300000 reads so far
2011-05-19 17:40:34,140 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:22990071-43010071
2011-05-19 17:40:45,036 - INFO - Processed 49400000 reads so far
2011-05-19 17:41:01,232 - INFO - Processed 49500000 reads so far
2011-05-19 17:41:11,673 - INFO - Processed 49600000 reads so far
2011-05-19 17:41:23,803 - INFO - Processed 49700000 reads so far
2011-05-19 17:41:38,950 - INFO - Processed 49800000 reads so far
2011-05-19 17:41:50,352 - INFO - Processed 49900000 reads so far
2011-05-19 17:42:03,640 - INFO - Processed 50000000 reads so far
2011-05-19 17:42:15,343 - INFO - Processed 50100000 reads so far
2011-05-19 17:42:28,443 - INFO - Processed 50200000 reads so far
2011-05-19 17:42:42,539 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:42990086-63010086
2011-05-19 17:42:43,693 - INFO - Processed 50300000 reads so far
2011-05-19 17:42:53,510 - INFO - Processed 50400000 reads so far
2011-05-19 17:43:05,519 - INFO - Processed 50500000 reads so far
2011-05-19 17:43:23,063 - INFO - Processed 50600000 reads so far
2011-05-19 17:43:34,417 - INFO - Processed 50700000 reads so far
2011-05-19 17:43:44,050 - INFO - Processed 50800000 reads so far
2011-05-19 17:43:54,008 - INFO - Processed 50900000 reads so far
2011-05-19 17:44:07,021 - INFO - Processed 51000000 reads so far
2011-05-19 17:44:20,337 - INFO - Processed 51100000 reads so far
2011-05-19 17:44:32,636 - INFO - Processed 51200000 reads so far
2011-05-19 17:44:34,469 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:2989974-23009974
2011-05-19 17:44:44,182 - INFO - Processed 51300000 reads so far
2011-05-19 17:44:55,456 - INFO - Processed 51400000 reads so far
2011-05-19 17:45:06,493 - INFO - Processed 51500000 reads so far
2011-05-19 17:45:17,634 - INFO - Processed 51600000 reads so far
2011-05-19 17:45:29,949 - INFO - Processed 51700000 reads so far
2011-05-19 17:45:42,857 - INFO - Processed 51800000 reads so far
2011-05-19 17:45:54,440 - INFO - Processed 51900000 reads so far
2011-05-19 17:46:07,586 - INFO - Processed 52000000 reads so far
2011-05-19 17:46:18,782 - INFO - Processed 52100000 reads so far
2011-05-19 17:46:27,264 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:22990063-43010063
2011-05-19 17:46:32,592 - INFO - Processed 52200000 reads so far
2011-05-19 17:46:44,105 - INFO - Processed 52300000 reads so far
2011-05-19 17:46:55,630 - INFO - Processed 52400000 reads so far
2011-05-19 17:47:07,707 - INFO - Processed 52500000 reads so far
2011-05-19 17:47:19,539 - INFO - Processed 52600000 reads so far
2011-05-19 17:47:32,429 - INFO - Processed 52700000 reads so far
2011-05-19 17:47:47,080 - INFO - Processed 52800000 reads so far
2011-05-19 17:47:58,716 - INFO - Processed 52900000 reads so far
2011-05-19 17:48:10,897 - INFO - Processed 53000000 reads so far
2011-05-19 17:48:23,394 - INFO - Processed 53100000 reads so far
2011-05-19 17:48:27,331 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:42990088-63010088
2011-05-19 17:48:35,268 - INFO - Processed 53200000 reads so far
2011-05-19 17:48:49,013 - INFO - Processed 53300000 reads so far
2011-05-19 17:48:59,332 - INFO - Processed 53400000 reads so far
2011-05-19 17:49:09,105 - INFO - Processed 53500000 reads so far
2011-05-19 17:49:20,091 - INFO - Processed 53600000 reads so far
2011-05-19 17:49:32,281 - INFO - Processed 53700000 reads so far
2011-05-19 17:49:44,539 - INFO - Processed 53800000 reads so far
2011-05-19 17:50:00,689 - INFO - Processed 53900000 reads so far
2011-05-19 17:50:13,740 - INFO - Processed 54000000 reads so far
2011-05-19 17:50:23,338 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:62990155-83010155
2011-05-19 17:50:27,363 - INFO - Processed 54100000 reads so far
2011-05-19 17:50:40,025 - INFO - Processed 54200000 reads so far
2011-05-19 17:50:52,547 - INFO - Processed 54300000 reads so far
2011-05-19 17:51:01,274 - INFO - Processed 54400000 reads so far
2011-05-19 17:51:14,857 - INFO - Processed 54500000 reads so far
2011-05-19 17:51:26,441 - INFO - Processed 54600000 reads so far
2011-05-19 17:51:38,691 - INFO - Processed 54700000 reads so far
2011-05-19 17:51:50,564 - INFO - Processed 54800000 reads so far
2011-05-19 17:52:02,611 - INFO - Processed 54900000 reads so far
2011-05-19 17:52:13,953 - INFO - Processed 55000000 reads so far
2011-05-19 17:52:18,788 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:82990156-103010156
2011-05-19 17:52:25,865 - INFO - Processed 55100000 reads so far
2011-05-19 17:52:38,524 - INFO - Processed 55200000 reads so far
2011-05-19 17:52:49,042 - INFO - Processed 55300000 reads so far
2011-05-19 17:53:02,373 - INFO - Processed 55400000 reads so far
2011-05-19 17:53:13,249 - INFO - Processed 55500000 reads so far
2011-05-19 17:53:23,819 - INFO - Processed 55600000 reads so far
2011-05-19 17:53:35,894 - INFO - Processed 55700000 reads so far
2011-05-19 17:53:46,669 - INFO - Processed 55800000 reads so far
2011-05-19 17:53:57,161 - INFO - Processed 55900000 reads so far
2011-05-19 17:54:08,183 - INFO - Processed 56000000 reads so far
2011-05-19 17:54:19,549 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:102990197-123010197
2011-05-19 17:54:22,117 - INFO - Processed 56100000 reads so far
2011-05-19 17:54:35,774 - INFO - Processed 56200000 reads so far
2011-05-19 17:54:46,768 - INFO - Processed 56300000 reads so far
2011-05-19 17:55:00,000 - INFO - Processed 56400000 reads so far
2011-05-19 17:55:11,446 - INFO - Processed 56500000 reads so far
2011-05-19 17:55:24,942 - INFO - Processed 56600000 reads so far
2011-05-19 17:55:36,259 - INFO - Processed 56700000 reads so far
2011-05-19 17:55:48,974 - INFO - Processed 56800000 reads so far
2011-05-19 17:56:00,240 - INFO - Processed 56900000 reads so far
2011-05-19 17:56:14,784 - INFO - Processed 57000000 reads so far
2011-05-19 17:56:17,419 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:122990227-143010227
2011-05-19 17:56:29,409 - INFO - Processed 57100000 reads so far
2011-05-19 17:56:42,306 - INFO - Processed 57200000 reads so far
2011-05-19 17:56:55,222 - INFO - Processed 57300000 reads so far
2011-05-19 17:57:06,513 - INFO - Processed 57400000 reads so far
2011-05-19 17:57:18,028 - INFO - Processed 57500000 reads so far
2011-05-19 17:57:30,777 - INFO - Processed 57600000 reads so far
2011-05-19 17:57:41,678 - INFO - Processed 57700000 reads so far
2011-05-19 17:57:53,080 - INFO - Processed 57800000 reads so far
2011-05-19 17:58:04,566 - INFO - Processed 57900000 reads so far
2011-05-19 17:58:16,433 - INFO - Processed 58000000 reads so far
2011-05-19 17:58:17,438 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:142990229-163010229
2011-05-19 17:58:27,904 - INFO - Processed 58100000 reads so far
2011-05-19 17:58:41,186 - INFO - Processed 58200000 reads so far
2011-05-19 17:58:52,606 - INFO - Processed 58300000 reads so far
2011-05-19 17:59:04,322 - INFO - Processed 58400000 reads so far
2011-05-19 17:59:17,121 - INFO - Processed 58500000 reads so far
2011-05-19 17:59:31,668 - INFO - Processed 58600000 reads so far
2011-05-19 17:59:44,969 - INFO - Processed 58700000 reads so far
2011-05-19 17:59:58,402 - INFO - Processed 58800000 reads so far
2011-05-19 18:00:09,520 - INFO - Processed 58900000 reads so far
2011-05-19 18:00:14,136 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:162990231-183010231
2011-05-19 18:00:20,896 - INFO - Processed 59000000 reads so far
2011-05-19 18:00:29,913 - INFO - Processed 59100000 reads so far
2011-05-19 18:00:37,111 - INFO - Processed 59200000 reads so far
2011-05-19 18:00:47,850 - INFO - Processed 59300000 reads so far
2011-05-19 18:01:00,025 - INFO - Processed 59400000 reads so far
2011-05-19 18:01:10,495 - INFO - Processed 59500000 reads so far
2011-05-19 18:01:20,865 - INFO - Processed 59600000 reads so far
2011-05-19 18:01:30,075 - INFO - Processed 59700000 reads so far
2011-05-19 18:01:40,146 - INFO - Processed 59800000 reads so far
2011-05-19 18:01:49,770 - INFO - Processed 59900000 reads so far
2011-05-19 18:01:53,242 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:182990257-203010257
2011-05-19 18:02:00,645 - INFO - Processed 60000000 reads so far
2011-05-19 18:02:13,069 - INFO - Processed 60100000 reads so far
2011-05-19 18:02:22,507 - INFO - Processed 60200000 reads so far
2011-05-19 18:02:32,999 - INFO - Processed 60300000 reads so far
2011-05-19 18:02:42,656 - INFO - Processed 60400000 reads so far
2011-05-19 18:02:52,458 - INFO - Processed 60500000 reads so far
2011-05-19 18:03:01,699 - INFO - Processed 60600000 reads so far
2011-05-19 18:03:07,648 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1_random:0-20010000
2011-05-19 18:03:10,104 - INFO - Processed 60700000 reads so far
2011-05-19 18:03:18,772 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:2990100-23010100
2011-05-19 18:03:19,055 - INFO - Processed 60800000 reads so far
2011-05-19 18:03:29,516 - INFO - Processed 60900000 reads so far
2011-05-19 18:03:38,121 - INFO - Processed 61000000 reads so far
2011-05-19 18:03:46,888 - INFO - Processed 61100000 reads so far
2011-05-19 18:03:58,219 - INFO - Processed 61200000 reads so far
2011-05-19 18:04:09,598 - INFO - Processed 61300000 reads so far
2011-05-19 18:04:25,655 - INFO - Processed 61400000 reads so far
2011-05-19 18:04:38,613 - INFO - Processed 61500000 reads so far
2011-05-19 18:04:53,948 - INFO - Processed 61600000 reads so far
2011-05-19 18:05:07,005 - INFO - Processed 61700000 reads so far
2011-05-19 18:05:15,350 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:22990148-43010148
2011-05-19 18:05:18,423 - INFO - Processed 61800000 reads so far
2011-05-19 18:05:32,580 - INFO - Processed 61900000 reads so far
2011-05-19 18:05:43,985 - INFO - Processed 62000000 reads so far
2011-05-19 18:05:54,856 - INFO - Processed 62100000 reads so far
2011-05-19 18:06:06,197 - INFO - Processed 62200000 reads so far
2011-05-19 18:06:16,115 - INFO - Processed 62300000 reads so far
2011-05-19 18:06:23,793 - INFO - Processed 62400000 reads so far
2011-05-19 18:06:34,399 - INFO - Processed 62500000 reads so far
2011-05-19 18:06:46,298 - INFO - Processed 62600000 reads so far
2011-05-19 18:06:54,447 - INFO - Processed 62700000 reads so far
2011-05-19 18:07:04,467 - INFO - Processed 62800000 reads so far
2011-05-19 18:07:05,562 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:42990175-63010175
2011-05-19 18:07:14,277 - INFO - Processed 62900000 reads so far
2011-05-19 18:07:22,797 - INFO - Processed 63000000 reads so far
2011-05-19 18:07:32,921 - INFO - Processed 63100000 reads so far
2011-05-19 18:07:43,073 - INFO - Processed 63200000 reads so far
2011-05-19 18:07:54,029 - INFO - Processed 63300000 reads so far
2011-05-19 18:08:02,559 - INFO - Processed 63400000 reads so far
2011-05-19 18:08:10,664 - INFO - Processed 63500000 reads so far
2011-05-19 18:08:18,793 - INFO - Processed 63600000 reads so far
2011-05-19 18:08:28,298 - INFO - Processed 63700000 reads so far
2011-05-19 18:08:35,054 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:62990187-83010187
2011-05-19 18:08:41,904 - INFO - Processed 63800000 reads so far
2011-05-19 18:08:55,299 - INFO - Processed 63900000 reads so far
2011-05-19 18:09:10,692 - INFO - Processed 64000000 reads so far
2011-05-19 18:09:23,629 - INFO - Processed 64100000 reads so far
2011-05-19 18:09:34,654 - INFO - Processed 64200000 reads so far
2011-05-19 18:09:46,417 - INFO - Processed 64300000 reads so far
2011-05-19 18:09:56,863 - INFO - Processed 64400000 reads so far
2011-05-19 18:10:06,722 - INFO - Processed 64500000 reads so far
2011-05-19 18:10:16,976 - INFO - Processed 64600000 reads so far
2011-05-19 18:10:25,016 - INFO - Processed 64700000 reads so far
2011-05-19 18:10:30,841 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:82990274-103010274
2011-05-19 18:10:33,513 - INFO - Processed 64800000 reads so far
2011-05-19 18:10:41,715 - INFO - Processed 64900000 reads so far
2011-05-19 18:10:54,406 - INFO - Processed 65000000 reads so far
2011-05-19 18:11:06,689 - INFO - Processed 65100000 reads so far
2011-05-19 18:11:16,379 - INFO - Processed 65200000 reads so far
2011-05-19 18:11:29,940 - INFO - Processed 65300000 reads so far
2011-05-19 18:11:42,335 - INFO - Processed 65400000 reads so far
2011-05-19 18:11:54,804 - INFO - Processed 65500000 reads so far
2011-05-19 18:12:06,090 - INFO - Processed 65600000 reads so far
2011-05-19 18:12:16,625 - INFO - Processed 65700000 reads so far
2011-05-19 18:12:25,171 - INFO - Processed 65800000 reads so far
2011-05-19 18:12:35,527 - INFO - Processed 65900000 reads so far
2011-05-19 18:12:49,061 - INFO - Processed 66000000 reads so far
2011-05-19 18:12:58,489 - INFO - Processed 66100000 reads so far
2011-05-19 18:13:09,741 - INFO - Processed 66200000 reads so far
2011-05-19 18:13:21,224 - INFO - Processed 66300000 reads so far
2011-05-19 18:13:31,982 - INFO - Processed 66400000 reads so far
2011-05-19 18:13:43,198 - INFO - Processed 66500000 reads so far
2011-05-19 18:13:52,706 - INFO - Processed 66600000 reads so far
2011-05-19 18:14:02,797 - INFO - Processed 66700000 reads so far
2011-05-19 18:14:11,724 - INFO - Processed 66800000 reads so far
2011-05-19 18:14:23,580 - INFO - Processed 66900000 reads so far
2011-05-19 18:14:36,100 - INFO - Processed 67000000 reads so far
2011-05-19 18:14:45,769 - INFO - Processed 67100000 reads so far
2011-05-19 18:14:56,374 - INFO - Processed 67200000 reads so far
2011-05-19 18:15:08,088 - INFO - Processed 67300000 reads so far
2011-05-19 18:15:18,255 - INFO - Processed 67400000 reads so far
2011-05-19 18:15:29,812 - INFO - Processed 67500000 reads so far
2011-05-19 18:15:38,959 - INFO - Processed 67600000 reads so far
2011-05-19 18:15:48,815 - INFO - Processed 67700000 reads so far
2011-05-19 18:15:59,976 - INFO - Processed 67800000 reads so far
2011-05-19 18:16:08,876 - INFO - Processed 67900000 reads so far
2011-05-19 18:16:17,836 - INFO - Processed 68000000 reads so far
2011-05-19 18:16:29,815 - INFO - Processed 68100000 reads so far
2011-05-19 18:16:38,826 - INFO - Processed 68200000 reads so far
2011-05-19 18:16:47,824 - INFO - Processed 68300000 reads so far
2011-05-19 18:16:56,703 - INFO - Processed 68400000 reads so far
2011-05-19 18:17:05,538 - INFO - Processed 68500000 reads so far
2011-05-19 18:17:18,516 - INFO - Processed 68600000 reads so far
2011-05-19 18:17:29,298 - INFO - Processed 68700000 reads so far
2011-05-19 18:17:39,171 - INFO - Processed 68800000 reads so far
2011-05-19 18:17:49,565 - INFO - Processed 68900000 reads so far
2011-05-19 18:17:58,661 - INFO - Processed 69000000 reads so far
2011-05-19 18:18:29,492 - INFO - Processed 69100000 reads so far
2011-05-19 18:24:15,463 - INFO - Processed 69200000 reads so far
2011-05-19 18:24:24,347 - INFO - Processed 69300000 reads so far
2011-05-19 18:24:33,051 - INFO - Processed 69400000 reads so far
2011-05-19 18:24:41,683 - INFO - Processed 69500000 reads so far
2011-05-19 18:24:52,270 - INFO - Processed 69600000 reads so far
2011-05-19 18:25:03,339 - INFO - Processed 69700000 reads so far
2011-05-19 18:25:10,828 - INFO - Processed 69800000 reads so far
2011-05-19 18:25:20,419 - INFO - Processed 69900000 reads so far
2011-05-19 18:25:27,149 - INFO - Processed 70000000 reads so far
2011-05-19 18:25:33,309 - INFO - Processed 70100000 reads so far
2011-05-19 18:25:41,239 - INFO - Processed 70200000 reads so far
2011-05-19 18:25:48,928 - INFO - Processed 70300000 reads so far
2011-05-19 18:25:56,642 - INFO - Processed 70400000 reads so far
2011-05-19 18:26:05,169 - INFO - Processed 70500000 reads so far
2011-05-19 18:26:10,931 - INFO - Processed 70600000 reads so far
2011-05-19 18:26:18,633 - INFO - Processed 70700000 reads so far
2011-05-19 18:26:27,399 - INFO - Processed 70800000 reads so far
2011-05-19 18:26:36,533 - INFO - Processed 70900000 reads so far
2011-05-19 18:26:45,068 - INFO - Processed 71000000 reads so far
2011-05-19 18:26:52,970 - INFO - Processed 71100000 reads so far
2011-05-19 18:27:02,689 - INFO - Processed 71200000 reads so far
2011-05-19 18:27:11,503 - INFO - Processed 71300000 reads so far
2011-05-19 18:27:21,272 - INFO - Processed 71400000 reads so far
2011-05-19 18:27:30,511 - INFO - Processed 71500000 reads so far
2011-05-19 18:27:36,545 - INFO - Processed 71600000 reads so far
2011-05-19 18:27:42,807 - INFO - Processed 71700000 reads so far
2011-05-19 18:27:52,227 - INFO - Processed 71800000 reads so far
2011-05-19 18:27:59,749 - INFO - Processed 71900000 reads so far
2011-05-19 18:28:07,779 - INFO - Processed 72000000 reads so far
2011-05-19 18:28:16,383 - INFO - Processed 72100000 reads so far
2011-05-19 18:28:25,232 - INFO - Processed 72200000 reads so far
2011-05-19 18:28:34,365 - INFO - Processed 72300000 reads so far
2011-05-19 18:28:43,191 - INFO - Processed 72400000 reads so far
2011-05-19 18:28:53,272 - INFO - Processed 72500000 reads so far
2011-05-19 18:29:03,798 - INFO - Processed 72600000 reads so far
2011-05-19 18:29:10,924 - INFO - Processed 72700000 reads so far
2011-05-19 18:29:18,818 - INFO - Processed 72800000 reads so far
2011-05-19 18:29:30,749 - INFO - Processed 72900000 reads so far
2011-05-19 18:29:38,735 - INFO - Processed 73000000 reads so far
2011-05-19 18:29:46,888 - INFO - Processed 73100000 reads so far
2011-05-19 18:29:53,473 - INFO - Processed 73200000 reads so far
2011-05-19 18:30:00,833 - INFO - Processed 73300000 reads so far
2011-05-19 18:30:10,144 - INFO - Processed 73400000 reads so far
2011-05-19 18:30:18,228 - INFO - Processed 73500000 reads so far
2011-05-19 18:30:25,394 - INFO - Processed 73600000 reads so far
2011-05-19 18:30:36,050 - INFO - Processed 73700000 reads so far
2011-05-19 18:30:43,392 - INFO - Processed 73800000 reads so far
2011-05-19 18:30:52,586 - INFO - Processed 73900000 reads so far
2011-05-19 18:31:01,027 - INFO - Processed 74000000 reads so far
2011-05-19 18:31:11,301 - INFO - Processed 74100000 reads so far
2011-05-19 18:31:24,269 - INFO - Processed 74200000 reads so far
2011-05-19 18:31:27,420 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:102990294-123010294
2011-05-19 18:31:37,634 - INFO - Processed 74300000 reads so far
2011-05-19 18:31:50,495 - INFO - Processed 74400000 reads so far
2011-05-19 18:32:00,009 - INFO - Processed 74500000 reads so far
2011-05-19 18:32:11,626 - INFO - Processed 74600000 reads so far
2011-05-19 18:32:21,595 - INFO - Processed 74700000 reads so far
2011-05-19 18:32:32,916 - INFO - Processed 74800000 reads so far
2011-05-19 18:32:42,618 - INFO - Processed 74900000 reads so far
2011-05-19 18:32:53,438 - INFO - Processed 75000000 reads so far
2011-05-19 18:33:03,568 - INFO - Processed 75100000 reads so far
2011-05-19 18:33:10,291 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:122990300-143010300
2011-05-19 18:33:12,735 - INFO - Processed 75200000 reads so far
2011-05-19 18:33:22,826 - INFO - Processed 75300000 reads so far
2011-05-19 18:33:31,669 - INFO - Processed 75400000 reads so far
2011-05-19 18:33:45,399 - INFO - Processed 75500000 reads so far
2011-05-19 18:33:54,896 - INFO - Processed 75600000 reads so far
2011-05-19 18:34:06,140 - INFO - Processed 75700000 reads so far
2011-05-19 18:34:20,010 - INFO - Processed 75800000 reads so far
2011-05-19 18:34:30,669 - INFO - Processed 75900000 reads so far
2011-05-19 18:34:41,217 - INFO - Processed 76000000 reads so far
2011-05-19 18:34:53,661 - INFO - Processed 76100000 reads so far
2011-05-19 18:35:01,561 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:142990308-163010308
2011-05-19 18:35:04,362 - INFO - Processed 76200000 reads so far
2011-05-19 18:35:15,986 - INFO - Processed 76300000 reads so far
2011-05-19 18:35:26,646 - INFO - Processed 76400000 reads so far
2011-05-19 18:35:36,782 - INFO - Processed 76500000 reads so far
2011-05-19 18:35:47,034 - INFO - Processed 76600000 reads so far
2011-05-19 18:35:58,614 - INFO - Processed 76700000 reads so far
2011-05-19 18:36:08,265 - INFO - Processed 76800000 reads so far
2011-05-19 18:36:17,301 - INFO - Processed 76900000 reads so far
2011-05-19 18:36:35,331 - INFO - Processed 77000000 reads so far
2011-05-19 18:36:46,409 - INFO - Processed 77100000 reads so far
2011-05-19 18:36:57,619 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:162990337-183010337
2011-05-19 18:36:57,702 - INFO - Processed 77200000 reads so far
2011-05-19 18:37:09,721 - INFO - Processed 77300000 reads so far
2011-05-19 18:37:21,408 - INFO - Processed 77400000 reads so far
2011-05-19 18:37:33,227 - INFO - Processed 77500000 reads so far
2011-05-19 18:37:44,654 - INFO - Processed 77600000 reads so far
2011-05-19 18:37:55,804 - INFO - Processed 77700000 reads so far
2011-05-19 18:38:05,991 - INFO - Processed 77800000 reads so far
2011-05-19 18:38:17,531 - INFO - Processed 77900000 reads so far
2011-05-19 18:38:26,503 - INFO - Processed 78000000 reads so far
2011-05-19 18:38:36,093 - INFO - Processed 78100000 reads so far
2011-05-19 18:38:44,091 - INFO - Processed 78200000 reads so far
2011-05-19 18:38:57,965 - INFO - Processed 78300000 reads so far
2011-05-19 18:38:58,716 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:2989998-23009998
2011-05-19 18:39:10,131 - INFO - Processed 78400000 reads so far
2011-05-19 18:39:21,918 - INFO - Processed 78500000 reads so far
2011-05-19 18:39:35,623 - INFO - Processed 78600000 reads so far
2011-05-19 18:39:47,370 - INFO - Processed 78700000 reads so far
2011-05-19 18:40:00,518 - INFO - Processed 78800000 reads so far
2011-05-19 18:40:11,811 - INFO - Processed 78900000 reads so far
2011-05-19 18:40:23,485 - INFO - Processed 79000000 reads so far
2011-05-19 18:40:36,485 - INFO - Processed 79100000 reads so far
2011-05-19 18:40:47,985 - INFO - Processed 79200000 reads so far
2011-05-19 18:40:51,927 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:22990023-43010023
2011-05-19 18:40:58,795 - INFO - Processed 79300000 reads so far
2011-05-19 18:41:13,656 - INFO - Processed 79400000 reads so far
2011-05-19 18:41:25,409 - INFO - Processed 79500000 reads so far
2011-05-19 18:41:32,398 - INFO - Processed 79600000 reads so far
2011-05-19 18:41:41,828 - INFO - Processed 79700000 reads so far
2011-05-19 18:41:53,490 - INFO - Processed 79800000 reads so far
2011-05-19 18:42:02,402 - INFO - Processed 79900000 reads so far
2011-05-19 18:42:14,675 - INFO - Processed 80000000 reads so far
2011-05-19 18:42:27,681 - INFO - Processed 80100000 reads so far
2011-05-19 18:42:38,859 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:42990028-63010028
2011-05-19 18:42:39,155 - INFO - Processed 80200000 reads so far
2011-05-19 18:42:50,825 - INFO - Processed 80300000 reads so far
2011-05-19 18:43:02,473 - INFO - Processed 80400000 reads so far
2011-05-19 18:43:13,600 - INFO - Processed 80500000 reads so far
2011-05-19 18:43:25,286 - INFO - Processed 80600000 reads so far
2011-05-19 18:43:38,504 - INFO - Processed 80700000 reads so far
2011-05-19 18:43:51,727 - INFO - Processed 80800000 reads so far
2011-05-19 18:44:05,649 - INFO - Processed 80900000 reads so far
2011-05-19 18:44:18,205 - INFO - Processed 81000000 reads so far
2011-05-19 18:44:30,251 - INFO - Processed 81100000 reads so far
2011-05-19 18:44:32,850 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:62990058-83010058
2011-05-19 18:44:43,948 - INFO - Processed 81200000 reads so far
2011-05-19 18:44:58,448 - INFO - Processed 81300000 reads so far
2011-05-19 18:45:09,889 - INFO - Processed 81400000 reads so far
2011-05-19 18:45:23,104 - INFO - Processed 81500000 reads so far
2011-05-19 18:45:35,452 - INFO - Processed 81600000 reads so far
2011-05-19 18:45:45,961 - INFO - Processed 81700000 reads so far
2011-05-19 18:45:59,437 - INFO - Processed 81800000 reads so far
2011-05-19 18:46:10,911 - INFO - Processed 81900000 reads so far
2011-05-19 18:46:23,881 - INFO - Processed 82000000 reads so far
2011-05-19 18:46:31,643 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:82990059-103010059
2011-05-19 18:46:38,304 - INFO - Processed 82100000 reads so far
2011-05-19 18:46:50,116 - INFO - Processed 82200000 reads so far
2011-05-19 18:47:03,560 - INFO - Processed 82300000 reads so far
2011-05-19 18:47:15,576 - INFO - Processed 82400000 reads so far
2011-05-19 18:47:25,084 - INFO - Processed 82500000 reads so far
2011-05-19 18:47:32,881 - INFO - Processed 82600000 reads so far
2011-05-19 18:47:43,640 - INFO - Processed 82700000 reads so far
2011-05-19 18:47:53,529 - INFO - Processed 82800000 reads so far
2011-05-19 18:48:02,312 - INFO - Processed 82900000 reads so far
2011-05-19 18:48:11,005 - INFO - Processed 83000000 reads so far
2011-05-19 18:48:19,393 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:102990061-123010061
2011-05-19 18:48:22,995 - INFO - Processed 83100000 reads so far
2011-05-19 18:48:33,433 - INFO - Processed 83200000 reads so far
2011-05-19 18:48:45,477 - INFO - Processed 83300000 reads so far
2011-05-19 18:48:55,921 - INFO - Processed 83400000 reads so far
2011-05-19 18:49:07,376 - INFO - Processed 83500000 reads so far
2011-05-19 18:49:18,480 - INFO - Processed 83600000 reads so far
2011-05-19 18:49:31,282 - INFO - Processed 83700000 reads so far
2011-05-19 18:49:45,182 - INFO - Processed 83800000 reads so far
2011-05-19 18:49:58,148 - INFO - Processed 83900000 reads so far
2011-05-19 18:50:11,633 - INFO - Processed 84000000 reads so far
2011-05-19 18:50:15,521 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:122990066-143010066
2011-05-19 18:50:23,067 - INFO - Processed 84100000 reads so far
2011-05-19 18:50:37,197 - INFO - Processed 84200000 reads so far
2011-05-19 18:50:48,493 - INFO - Processed 84300000 reads so far
2011-05-19 18:51:01,158 - INFO - Processed 84400000 reads so far
2011-05-19 18:51:14,184 - INFO - Processed 84500000 reads so far
2011-05-19 18:51:25,558 - INFO - Processed 84600000 reads so far
2011-05-19 18:51:38,071 - INFO - Processed 84700000 reads so far
2011-05-19 18:51:50,219 - INFO - Processed 84800000 reads so far
2011-05-19 18:52:01,089 - INFO - Processed 84900000 reads so far
2011-05-19 18:52:08,972 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:142990143-163010143
2011-05-19 18:52:10,037 - INFO - Processed 85000000 reads so far
2011-05-19 18:52:23,915 - INFO - Processed 85100000 reads so far
2011-05-19 18:52:35,418 - INFO - Processed 85200000 reads so far
2011-05-19 18:52:46,038 - INFO - Processed 85300000 reads so far
2011-05-19 18:52:58,238 - INFO - Processed 85400000 reads so far
2011-05-19 18:53:09,607 - INFO - Processed 85500000 reads so far
2011-05-19 18:53:20,906 - INFO - Processed 85600000 reads so far
2011-05-19 18:53:32,296 - INFO - Processed 85700000 reads so far
2011-05-19 18:53:44,638 - INFO - Processed 85800000 reads so far
2011-05-19 18:53:45,988 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3_random:0-20010005
2011-05-19 18:53:46,113 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:2989996-23009996
2011-05-19 18:53:56,427 - INFO - Processed 85900000 reads so far
2011-05-19 18:54:07,626 - INFO - Processed 86000000 reads so far
2011-05-19 18:54:19,969 - INFO - Processed 86100000 reads so far
2011-05-19 18:55:05,744 - INFO - Processed 86200000 reads so far
2011-05-19 18:55:13,818 - INFO - Processed 86300000 reads so far
2011-05-19 18:55:22,538 - INFO - Processed 86400000 reads so far
2011-05-19 18:55:33,739 - INFO - Processed 86500000 reads so far
2011-05-19 18:55:44,108 - INFO - Processed 86600000 reads so far
2011-05-19 18:55:52,970 - INFO - Processed 86700000 reads so far
2011-05-19 18:56:04,829 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:22990022-43010022
2011-05-19 18:56:07,053 - INFO - Processed 86800000 reads so far
2011-05-19 18:56:18,386 - INFO - Processed 86900000 reads so far
2011-05-19 18:56:34,048 - INFO - Processed 87000000 reads so far
2011-05-19 18:56:46,722 - INFO - Processed 87100000 reads so far
2011-05-19 18:57:00,291 - INFO - Processed 87200000 reads so far
2011-05-19 18:57:13,844 - INFO - Processed 87300000 reads so far
2011-05-19 18:57:25,187 - INFO - Processed 87400000 reads so far
2011-05-19 18:57:37,941 - INFO - Processed 87500000 reads so far
2011-05-19 18:57:49,601 - INFO - Processed 87600000 reads so far
2011-05-19 18:57:58,651 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:42990092-63010092
2011-05-19 18:58:00,721 - INFO - Processed 87700000 reads so far
2011-05-19 18:58:12,223 - INFO - Processed 87800000 reads so far
2011-05-19 18:58:22,692 - INFO - Processed 87900000 reads so far
2011-05-19 18:58:32,593 - INFO - Processed 88000000 reads so far
2011-05-19 18:58:41,415 - INFO - Processed 88100000 reads so far
2011-05-19 18:58:50,548 - INFO - Processed 88200000 reads so far
2011-05-19 18:59:00,230 - INFO - Processed 88300000 reads so far
2011-05-19 18:59:11,395 - INFO - Processed 88400000 reads so far
2011-05-19 18:59:20,994 - INFO - Processed 88500000 reads so far
2011-05-19 18:59:32,233 - INFO - Processed 88600000 reads so far
2011-05-19 18:59:41,938 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:62990105-83010105
2011-05-19 18:59:42,563 - INFO - Processed 88700000 reads so far
2011-05-19 18:59:49,919 - INFO - Processed 88800000 reads so far
2011-05-19 18:59:58,982 - INFO - Processed 88900000 reads so far
2011-05-19 19:00:07,990 - INFO - Processed 89000000 reads so far
2011-05-19 19:00:16,071 - INFO - Processed 89100000 reads so far
2011-05-19 19:00:25,326 - INFO - Processed 89200000 reads so far
2011-05-19 19:00:37,002 - INFO - Processed 89300000 reads so far
2011-05-19 19:00:48,384 - INFO - Processed 89400000 reads so far
2011-05-19 19:01:00,082 - INFO - Processed 89500000 reads so far
2011-05-19 19:01:14,101 - INFO - Processed 89600000 reads so far
2011-05-19 19:01:19,176 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:82990154-103010154
2011-05-19 19:01:25,867 - INFO - Processed 89700000 reads so far
2011-05-19 19:01:38,935 - INFO - Processed 89800000 reads so far
2011-05-19 19:01:48,051 - INFO - Processed 89900000 reads so far
2011-05-19 19:01:57,551 - INFO - Processed 90000000 reads so far
2011-05-19 19:02:05,009 - INFO - Processed 90100000 reads so far
2011-05-19 19:02:15,627 - INFO - Processed 90200000 reads so far
2011-05-19 19:02:23,849 - INFO - Processed 90300000 reads so far
2011-05-19 19:02:32,924 - INFO - Processed 90400000 reads so far
2011-05-19 19:02:41,566 - INFO - Processed 90500000 reads so far
2011-05-19 19:02:51,601 - INFO - Processed 90600000 reads so far
2011-05-19 19:02:53,576 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:102990175-123010175
2011-05-19 19:03:04,998 - INFO - Processed 90700000 reads so far
2011-05-19 19:03:16,960 - INFO - Processed 90800000 reads so far
2011-05-19 19:03:28,358 - INFO - Processed 90900000 reads so far
2011-05-19 19:03:38,013 - INFO - Processed 91000000 reads so far
2011-05-19 19:03:46,718 - INFO - Processed 91100000 reads so far
2011-05-19 19:03:57,294 - INFO - Processed 91200000 reads so far
2011-05-19 19:04:07,357 - INFO - Processed 91300000 reads so far
2011-05-19 19:04:16,874 - INFO - Processed 91400000 reads so far
2011-05-19 19:04:25,198 - INFO - Processed 91500000 reads so far
2011-05-19 19:04:30,032 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:122990185-143010185
2011-05-19 19:04:36,149 - INFO - Processed 91600000 reads so far
2011-05-19 19:04:48,909 - INFO - Processed 91700000 reads so far
2011-05-19 19:05:00,584 - INFO - Processed 91800000 reads so far
2011-05-19 19:05:11,024 - INFO - Processed 91900000 reads so far
2011-05-19 19:05:22,136 - INFO - Processed 92000000 reads so far
2011-05-19 19:05:35,542 - INFO - Processed 92100000 reads so far
2011-05-19 19:05:46,922 - INFO - Processed 92200000 reads so far
2011-05-19 19:05:58,682 - INFO - Processed 92300000 reads so far
2011-05-19 19:06:10,754 - INFO - Processed 92400000 reads so far
2011-05-19 19:06:25,143 - INFO - Processed 92500000 reads so far
2011-05-19 19:06:36,624 - INFO - Processed 92600000 reads so far
2011-05-19 19:06:37,624 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:142990228-163010228
2011-05-19 19:06:47,379 - INFO - Processed 92700000 reads so far
2011-05-19 19:06:57,883 - INFO - Processed 92800000 reads so far
2011-05-19 19:07:10,372 - INFO - Processed 92900000 reads so far
2011-05-19 19:07:19,527 - INFO - Processed 93000000 reads so far
2011-05-19 19:07:29,154 - INFO - Processed 93100000 reads so far
2011-05-19 19:07:40,920 - INFO - Processed 93200000 reads so far
2011-05-19 19:07:52,532 - INFO - Processed 93300000 reads so far
2011-05-19 19:08:01,794 - INFO - Processed 93400000 reads so far
2011-05-19 19:08:05,205 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4_random:0-20010018
2011-05-19 19:08:06,158 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:2990008-23010008
2011-05-19 19:08:14,322 - INFO - Processed 93500000 reads so far
2011-05-19 19:08:26,875 - INFO - Processed 93600000 reads so far
2011-05-19 19:08:37,812 - INFO - Processed 93700000 reads so far
2011-05-19 19:08:50,753 - INFO - Processed 93800000 reads so far
2011-05-19 19:09:01,866 - INFO - Processed 93900000 reads so far
2011-05-19 19:09:12,734 - INFO - Processed 94000000 reads so far
2011-05-19 19:09:23,645 - INFO - Processed 94100000 reads so far
2011-05-19 19:09:35,368 - INFO - Processed 94200000 reads so far
2011-05-19 19:09:46,964 - INFO - Processed 94300000 reads so far
2011-05-19 19:09:59,951 - INFO - Processed 94400000 reads so far
2011-05-19 19:10:00,686 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:22990043-43010043
2011-05-19 19:10:10,059 - INFO - Processed 94500000 reads so far
2011-05-19 19:10:44,443 - INFO - Processed 94600000 reads so far
2011-05-19 19:11:16,788 - INFO - Processed 94700000 reads so far
2011-05-19 19:11:40,580 - INFO - Processed 94800000 reads so far
2011-05-19 19:11:58,225 - INFO - Processed 94900000 reads so far
2011-05-19 19:12:11,165 - INFO - Processed 95000000 reads so far
2011-05-19 19:12:25,285 - INFO - Processed 95100000 reads so far
2011-05-19 19:12:36,538 - INFO - Processed 95200000 reads so far
2011-05-19 19:12:49,104 - INFO - Processed 95300000 reads so far
2011-05-19 19:13:00,689 - INFO - Processed 95400000 reads so far
2011-05-19 19:13:03,778 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:42990093-63010093
2011-05-19 19:13:12,174 - INFO - Processed 95500000 reads so far
2011-05-19 19:13:21,788 - INFO - Processed 95600000 reads so far
2011-05-19 19:13:31,402 - INFO - Processed 95700000 reads so far
2011-05-19 19:13:39,452 - INFO - Processed 95800000 reads so far
2011-05-19 19:13:49,600 - INFO - Processed 95900000 reads so far
2011-05-19 19:14:02,020 - INFO - Processed 96000000 reads so far
2011-05-19 19:14:09,909 - INFO - Processed 96100000 reads so far
2011-05-19 19:14:18,867 - INFO - Processed 96200000 reads so far
2011-05-19 19:14:29,654 - INFO - Processed 96300000 reads so far
2011-05-19 19:14:35,399 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:62990112-83010112
2011-05-19 19:14:41,479 - INFO - Processed 96400000 reads so far
2011-05-19 19:14:52,873 - INFO - Processed 96500000 reads so far
2011-05-19 19:15:04,158 - INFO - Processed 96600000 reads so far
2011-05-19 19:15:12,914 - INFO - Processed 96700000 reads so far
2011-05-19 19:15:22,958 - INFO - Processed 96800000 reads so far
2011-05-19 19:15:32,148 - INFO - Processed 96900000 reads so far
2011-05-19 19:15:44,694 - INFO - Processed 97000000 reads so far
2011-05-19 19:15:53,085 - INFO - Processed 97100000 reads so far
2011-05-19 19:16:01,519 - INFO - Processed 97200000 reads so far
2011-05-19 19:16:11,206 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:82990134-103010134
2011-05-19 19:16:12,481 - INFO - Processed 97300000 reads so far
2011-05-19 19:16:26,715 - INFO - Processed 97400000 reads so far
2011-05-19 19:16:41,042 - INFO - Processed 97500000 reads so far
2011-05-19 19:16:53,476 - INFO - Processed 97600000 reads so far
2011-05-19 19:17:04,609 - INFO - Processed 97700000 reads so far
2011-05-19 19:17:17,281 - INFO - Processed 97800000 reads so far
2011-05-19 19:17:31,088 - INFO - Processed 97900000 reads so far
2011-05-19 19:17:42,580 - INFO - Processed 98000000 reads so far
2011-05-19 19:17:55,155 - INFO - Processed 98100000 reads so far
2011-05-19 19:18:04,436 - INFO - Processed 98200000 reads so far
2011-05-19 19:18:04,868 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:102990138-123010138
2011-05-19 19:18:16,915 - INFO - Processed 98300000 reads so far
2011-05-19 19:18:30,561 - INFO - Processed 98400000 reads so far
2011-05-19 19:18:42,039 - INFO - Processed 98500000 reads so far
2011-05-19 19:18:52,107 - INFO - Processed 98600000 reads so far
2011-05-19 19:19:02,681 - INFO - Processed 98700000 reads so far
2011-05-19 19:19:15,811 - INFO - Processed 98800000 reads so far
2011-05-19 19:19:26,933 - INFO - Processed 98900000 reads so far
2011-05-19 19:19:36,033 - INFO - Processed 99000000 reads so far
2011-05-19 19:19:46,770 - INFO - Processed 99100000 reads so far
2011-05-19 19:20:01,148 - INFO - Processed 99200000 reads so far
2011-05-19 19:20:08,689 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:122990147-143010147
2011-05-19 19:20:13,230 - INFO - Processed 99300000 reads so far
2011-05-19 19:20:25,496 - INFO - Processed 99400000 reads so far
2011-05-19 19:20:37,698 - INFO - Processed 99500000 reads so far
2011-05-19 19:20:48,565 - INFO - Processed 99600000 reads so far
2011-05-19 19:21:00,882 - INFO - Processed 99700000 reads so far
2011-05-19 19:21:11,580 - INFO - Processed 99800000 reads so far
2011-05-19 19:21:22,798 - INFO - Processed 99900000 reads so far
2011-05-19 19:21:35,959 - INFO - Processed 100000000 reads so far
2011-05-19 19:21:47,365 - INFO - Processed 100100000 reads so far
2011-05-19 19:21:58,320 - INFO - Processed 100200000 reads so far
2011-05-19 19:22:08,958 - INFO - Processed 100300000 reads so far
2011-05-19 19:22:09,548 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:142990155-163010155
2011-05-19 19:22:17,530 - INFO - Processed 100400000 reads so far
2011-05-19 19:22:25,557 - INFO - Processed 100500000 reads so far
2011-05-19 19:22:32,848 - INFO - Processed 100600000 reads so far
2011-05-19 19:22:42,412 - INFO - Processed 100700000 reads so far
2011-05-19 19:22:51,227 - INFO - Processed 100800000 reads so far
2011-05-19 19:22:51,542 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5_random:0-20010006
2011-05-19 19:22:52,605 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:2989985-23009985
2011-05-19 19:23:01,935 - INFO - Processed 100900000 reads so far
2011-05-19 19:23:11,112 - INFO - Processed 101000000 reads so far
2011-05-19 19:23:22,978 - INFO - Processed 101100000 reads so far
2011-05-19 19:23:30,794 - INFO - Processed 101200000 reads so far
2011-05-19 19:23:40,938 - INFO - Processed 101300000 reads so far
2011-05-19 19:23:48,886 - INFO - Processed 101400000 reads so far
2011-05-19 19:23:58,136 - INFO - Processed 101500000 reads so far
2011-05-19 19:24:06,525 - INFO - Processed 101600000 reads so far
2011-05-19 19:24:15,898 - INFO - Processed 101700000 reads so far
2011-05-19 19:24:19,417 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:22990007-43010007
2011-05-19 19:24:28,499 - INFO - Processed 101800000 reads so far
2011-05-19 19:24:39,937 - INFO - Processed 101900000 reads so far
2011-05-19 19:24:52,857 - INFO - Processed 102000000 reads so far
2011-05-19 19:25:04,619 - INFO - Processed 102100000 reads so far
2011-05-19 19:25:16,998 - INFO - Processed 102200000 reads so far
2011-05-19 19:25:27,122 - INFO - Processed 102300000 reads so far
2011-05-19 19:25:38,068 - INFO - Processed 102400000 reads so far
2011-05-19 19:25:49,177 - INFO - Processed 102500000 reads so far
2011-05-19 19:25:59,236 - INFO - Processed 102600000 reads so far
2011-05-19 19:26:08,570 - INFO - Processed 102700000 reads so far
2011-05-19 19:26:12,876 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:42990008-63010008
2011-05-19 19:26:22,603 - INFO - Processed 102800000 reads so far
2011-05-19 19:26:33,590 - INFO - Processed 102900000 reads so far
2011-05-19 19:26:44,839 - INFO - Processed 103000000 reads so far
2011-05-19 19:26:56,153 - INFO - Processed 103100000 reads so far
2011-05-19 19:27:05,101 - INFO - Processed 103200000 reads so far
2011-05-19 19:27:14,307 - INFO - Processed 103300000 reads so far
2011-05-19 19:27:25,064 - INFO - Processed 103400000 reads so far
2011-05-19 19:27:36,527 - INFO - Processed 103500000 reads so far
2011-05-19 19:27:46,947 - INFO - Processed 103600000 reads so far
2011-05-19 19:27:55,595 - INFO - Processed 103700000 reads so far
2011-05-19 19:27:58,236 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:62990047-83010047
2011-05-19 19:28:11,920 - INFO - Processed 103800000 reads so far
2011-05-19 19:28:22,528 - INFO - Processed 103900000 reads so far
2011-05-19 19:28:34,224 - INFO - Processed 104000000 reads so far
2011-05-19 19:28:44,406 - INFO - Processed 104100000 reads so far
2011-05-19 19:28:53,904 - INFO - Processed 104200000 reads so far
2011-05-19 19:29:05,269 - INFO - Processed 104300000 reads so far
2011-05-19 19:29:18,519 - INFO - Processed 104400000 reads so far
2011-05-19 19:29:29,403 - INFO - Processed 104500000 reads so far
2011-05-19 19:29:40,812 - INFO - Processed 104600000 reads so far
2011-05-19 19:29:46,178 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:82990061-103010061
2011-05-19 19:29:55,129 - INFO - Processed 104700000 reads so far
2011-05-19 19:30:06,791 - INFO - Processed 104800000 reads so far
2011-05-19 19:30:17,193 - INFO - Processed 104900000 reads so far
2011-05-19 19:30:31,054 - INFO - Processed 105000000 reads so far
2011-05-19 19:30:42,238 - INFO - Processed 105100000 reads so far
2011-05-19 19:30:53,704 - INFO - Processed 105200000 reads so far
2011-05-19 19:31:07,139 - INFO - Processed 105300000 reads so far
2011-05-19 19:31:18,738 - INFO - Processed 105400000 reads so far
2011-05-19 19:31:35,423 - INFO - Processed 105500000 reads so far
2011-05-19 19:31:46,486 - INFO - Processed 105600000 reads so far
2011-05-19 19:31:57,553 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:102990078-123010078
2011-05-19 19:32:00,490 - INFO - Processed 105700000 reads so far
2011-05-19 19:32:13,942 - INFO - Processed 105800000 reads so far
2011-05-19 19:32:24,848 - INFO - Processed 105900000 reads so far
2011-05-19 19:32:36,106 - INFO - Processed 106000000 reads so far
2011-05-19 19:32:49,926 - INFO - Processed 106100000 reads so far
2011-05-19 19:33:00,348 - INFO - Processed 106200000 reads so far
2011-05-19 19:33:09,540 - INFO - Processed 106300000 reads so far
2011-05-19 19:33:19,695 - INFO - Processed 106400000 reads so far
2011-05-19 19:33:29,191 - INFO - Processed 106500000 reads so far
2011-05-19 19:33:40,131 - INFO - Processed 106600000 reads so far
2011-05-19 19:33:49,096 - INFO - Processed 106700000 reads so far
2011-05-19 19:33:58,041 - INFO - Processed 106800000 reads so far
2011-05-19 19:34:06,044 - INFO - Processed 106900000 reads so far
2011-05-19 19:34:13,793 - INFO - Processed 107000000 reads so far
2011-05-19 19:34:23,245 - INFO - Processed 107100000 reads so far
2011-05-19 19:34:33,487 - INFO - Processed 107200000 reads so far
2011-05-19 19:34:44,012 - INFO - Processed 107300000 reads so far
2011-05-19 19:34:54,537 - INFO - Processed 107400000 reads so far
2011-05-19 19:35:05,877 - INFO - Processed 107500000 reads so far
2011-05-19 19:35:06,776 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:122990082-143010082
2011-05-19 19:35:17,217 - INFO - Processed 107600000 reads so far
2011-05-19 19:35:27,561 - INFO - Processed 107700000 reads so far
2011-05-19 19:35:37,327 - INFO - Processed 107800000 reads so far
2011-05-19 19:35:45,867 - INFO - Processed 107900000 reads so far
2011-05-19 19:35:54,752 - INFO - Processed 108000000 reads so far
2011-05-19 19:36:03,828 - INFO - Processed 108100000 reads so far
2011-05-19 19:36:14,515 - INFO - Processed 108200000 reads so far
2011-05-19 19:36:24,719 - INFO - Processed 108300000 reads so far
2011-05-19 19:36:36,513 - INFO - Processed 108400000 reads so far
2011-05-19 19:36:46,018 - INFO - Processed 108500000 reads so far
2011-05-19 19:36:46,870 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:142990101-163010101
2011-05-19 19:36:56,120 - INFO - Processed 108600000 reads so far
2011-05-19 19:37:08,017 - INFO - Processed 108700000 reads so far
2011-05-19 19:37:17,013 - INFO - Processed 108800000 reads so far
2011-05-19 19:37:20,094 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:2990024-23010024
2011-05-19 19:37:25,937 - INFO - Processed 108900000 reads so far
2011-05-19 19:37:34,072 - INFO - Processed 109000000 reads so far
2011-05-19 19:37:45,435 - INFO - Processed 109100000 reads so far
2011-05-19 19:37:55,554 - INFO - Processed 109200000 reads so far
2011-05-19 19:38:06,236 - INFO - Processed 109300000 reads so far
2011-05-19 19:38:17,777 - INFO - Processed 109400000 reads so far
2011-05-19 19:38:26,075 - INFO - Processed 109500000 reads so far
2011-05-19 19:38:37,002 - INFO - Processed 109600000 reads so far
2011-05-19 19:38:45,383 - INFO - Processed 109700000 reads so far
2011-05-19 19:38:52,474 - INFO - Processed 109800000 reads so far
2011-05-19 19:38:54,146 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:22990058-43010058
2011-05-19 19:39:02,615 - INFO - Processed 109900000 reads so far
2011-05-19 19:39:12,457 - INFO - Processed 110000000 reads so far
2011-05-19 19:39:21,098 - INFO - Processed 110100000 reads so far
2011-05-19 19:39:32,471 - INFO - Processed 110200000 reads so far
2011-05-19 19:39:41,367 - INFO - Processed 110300000 reads so far
2011-05-19 19:39:49,248 - INFO - Processed 110400000 reads so far
2011-05-19 19:39:58,516 - INFO - Processed 110500000 reads so far
2011-05-19 19:40:37,032 - INFO - Processed 110600000 reads so far
2011-05-19 19:40:43,563 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:46346384-66366384
2011-05-19 19:40:46,833 - INFO - Processed 110700000 reads so far
2011-05-19 19:40:58,711 - INFO - Processed 110800000 reads so far
2011-05-19 19:41:11,099 - INFO - Processed 110900000 reads so far
2011-05-19 19:41:22,719 - INFO - Processed 111000000 reads so far
2011-05-19 19:41:37,309 - INFO - Processed 111100000 reads so far
2011-05-19 19:41:48,432 - INFO - Processed 111200000 reads so far
2011-05-19 19:41:59,778 - INFO - Processed 111300000 reads so far
2011-05-19 19:42:12,845 - INFO - Processed 111400000 reads so far
2011-05-19 19:42:25,949 - INFO - Processed 111500000 reads so far
2011-05-19 19:42:38,368 - INFO - Processed 111600000 reads so far
2011-05-19 19:42:52,982 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:66346426-86366426
2011-05-19 19:42:54,467 - INFO - Processed 111700000 reads so far
2011-05-19 19:43:03,947 - INFO - Processed 111800000 reads so far
2011-05-19 19:43:15,504 - INFO - Processed 111900000 reads so far
2011-05-19 19:43:28,366 - INFO - Processed 112000000 reads so far
2011-05-19 19:43:38,580 - INFO - Processed 112100000 reads so far
2011-05-19 19:43:48,323 - INFO - Processed 112200000 reads so far
2011-05-19 19:44:00,484 - INFO - Processed 112300000 reads so far
2011-05-19 19:44:12,407 - INFO - Processed 112400000 reads so far
2011-05-19 19:44:21,410 - INFO - Processed 112500000 reads so far
2011-05-19 19:44:31,020 - INFO - Processed 112600000 reads so far
2011-05-19 19:44:41,687 - INFO - Processed 112700000 reads so far
2011-05-19 19:44:41,692 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:86346459-106366459
2011-05-19 19:44:53,436 - INFO - Processed 112800000 reads so far
2011-05-19 19:45:01,941 - INFO - Processed 112900000 reads so far
2011-05-19 19:45:14,842 - INFO - Processed 113000000 reads so far
2011-05-19 19:45:24,047 - INFO - Processed 113100000 reads so far
2011-05-19 19:45:33,605 - INFO - Processed 113200000 reads so far
2011-05-19 19:45:46,351 - INFO - Processed 113300000 reads so far
2011-05-19 19:45:58,307 - INFO - Processed 113400000 reads so far
2011-05-19 19:46:07,548 - INFO - Processed 113500000 reads so far
2011-05-19 19:46:20,553 - INFO - Processed 113600000 reads so far
2011-05-19 19:46:30,638 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:106346467-126366467
2011-05-19 19:46:33,629 - INFO - Processed 113700000 reads so far
2011-05-19 19:46:44,014 - INFO - Processed 113800000 reads so far
2011-05-19 19:46:55,651 - INFO - Processed 113900000 reads so far
2011-05-19 19:47:04,667 - INFO - Processed 114000000 reads so far
2011-05-19 19:47:14,142 - INFO - Processed 114100000 reads so far
2011-05-19 19:47:24,428 - INFO - Processed 114200000 reads so far
2011-05-19 19:47:33,068 - INFO - Processed 114300000 reads so far
2011-05-19 19:47:41,683 - INFO - Processed 114400000 reads so far
2011-05-19 19:47:50,317 - INFO - Processed 114500000 reads so far
2011-05-19 19:48:01,590 - INFO - Processed 114600000 reads so far
2011-05-19 19:48:08,966 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:126346469-146366469
2011-05-19 19:48:11,446 - INFO - Processed 114700000 reads so far
2011-05-19 19:48:22,331 - INFO - Processed 114800000 reads so far
2011-05-19 19:48:32,946 - INFO - Processed 114900000 reads so far
2011-05-19 19:48:41,239 - INFO - Processed 115000000 reads so far
2011-05-19 19:48:50,577 - INFO - Processed 115100000 reads so far
2011-05-19 19:48:59,660 - INFO - Processed 115200000 reads so far
2011-05-19 19:49:09,927 - INFO - Processed 115300000 reads so far
2011-05-19 19:49:18,604 - INFO - Processed 115400000 reads so far
2011-05-19 19:49:27,474 - INFO - Processed 115500000 reads so far
2011-05-19 19:49:37,977 - INFO - Processed 115600000 reads so far
2011-05-19 19:49:49,051 - INFO - Processed 115700000 reads so far
2011-05-19 19:49:52,373 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:146346484-166366484
2011-05-19 19:49:57,684 - INFO - Processed 115800000 reads so far
2011-05-19 19:50:07,336 - INFO - Processed 115900000 reads so far
2011-05-19 19:50:16,724 - INFO - Processed 116000000 reads so far
2011-05-19 19:50:25,636 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7_random:0-20010311
2011-05-19 19:50:26,064 - INFO - Processed 116100000 reads so far
2011-05-19 19:50:26,538 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:2990015-23010015
2011-05-19 19:50:35,698 - INFO - Processed 116200000 reads so far
2011-05-19 19:50:44,754 - INFO - Processed 116300000 reads so far
2011-05-19 19:50:54,970 - INFO - Processed 116400000 reads so far
2011-05-19 19:51:07,438 - INFO - Processed 116500000 reads so far
2011-05-19 19:51:17,578 - INFO - Processed 116600000 reads so far
2011-05-19 19:51:28,242 - INFO - Processed 116700000 reads so far
2011-05-19 19:51:38,156 - INFO - Processed 116800000 reads so far
2011-05-19 19:51:50,356 - INFO - Processed 116900000 reads so far
2011-05-19 19:51:58,103 - INFO - Processed 117000000 reads so far
2011-05-19 19:52:06,615 - INFO - Processed 117100000 reads so far
2011-05-19 19:52:17,036 - INFO - Processed 117200000 reads so far
2011-05-19 19:52:21,321 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:22990035-43010035
2011-05-19 19:52:27,855 - INFO - Processed 117300000 reads so far
2011-05-19 19:52:37,530 - INFO - Processed 117400000 reads so far
2011-05-19 19:52:46,395 - INFO - Processed 117500000 reads so far
2011-05-19 19:52:54,950 - INFO - Processed 117600000 reads so far
2011-05-19 19:53:05,894 - INFO - Processed 117700000 reads so far
2011-05-19 19:53:19,634 - INFO - Processed 117800000 reads so far
2011-05-19 19:53:30,146 - INFO - Processed 117900000 reads so far
2011-05-19 19:53:39,917 - INFO - Processed 118000000 reads so far
2011-05-19 19:53:50,468 - INFO - Processed 118100000 reads so far
2011-05-19 19:53:59,600 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:42990036-63010036
2011-05-19 19:54:00,109 - INFO - Processed 118200000 reads so far
2011-05-19 19:54:10,039 - INFO - Processed 118300000 reads so far
2011-05-19 19:54:22,304 - INFO - Processed 118400000 reads so far
2011-05-19 19:54:32,441 - INFO - Processed 118500000 reads so far
2011-05-19 19:54:41,527 - INFO - Processed 118600000 reads so far
2011-05-19 19:54:49,952 - INFO - Processed 118700000 reads so far
2011-05-19 19:55:00,307 - INFO - Processed 118800000 reads so far
2011-05-19 19:55:08,432 - INFO - Processed 118900000 reads so far
2011-05-19 19:55:17,014 - INFO - Processed 119000000 reads so far
2011-05-19 19:55:21,071 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:62990045-83010045
2011-05-19 19:55:26,916 - INFO - Processed 119100000 reads so far
2011-05-19 19:55:38,691 - INFO - Processed 119200000 reads so far
2011-05-19 19:55:47,620 - INFO - Processed 119300000 reads so far
2011-05-19 19:55:56,703 - INFO - Processed 119400000 reads so far
2011-05-19 19:56:07,953 - INFO - Processed 119500000 reads so far
2011-05-19 19:56:18,238 - INFO - Processed 119600000 reads so far
2011-05-19 19:56:28,005 - INFO - Processed 119700000 reads so far
2011-05-19 19:56:38,022 - INFO - Processed 119800000 reads so far
2011-05-19 19:56:49,740 - INFO - Processed 119900000 reads so far
2011-05-19 19:57:00,349 - INFO - Processed 120000000 reads so far
2011-05-19 19:57:04,306 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:82990073-103010073
2011-05-19 19:57:13,321 - INFO - Processed 120100000 reads so far
2011-05-19 19:57:24,029 - INFO - Processed 120200000 reads so far
2011-05-19 19:57:33,785 - INFO - Processed 120300000 reads so far
2011-05-19 19:57:42,005 - INFO - Processed 120400000 reads so far
2011-05-19 19:57:50,290 - INFO - Processed 120500000 reads so far
2011-05-19 19:58:01,534 - INFO - Processed 120600000 reads so far
2011-05-19 19:58:09,740 - INFO - Processed 120700000 reads so far
2011-05-19 19:58:19,916 - INFO - Processed 120800000 reads so far
2011-05-19 19:58:28,784 - INFO - Processed 120900000 reads so far
2011-05-19 19:58:40,760 - INFO - Processed 121000000 reads so far
2011-05-19 19:58:43,534 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:102990184-123010184
2011-05-19 19:58:52,129 - INFO - Processed 121100000 reads so far
2011-05-19 19:59:06,395 - INFO - Processed 121200000 reads so far
2011-05-19 19:59:19,113 - INFO - Processed 121300000 reads so far
2011-05-19 19:59:31,491 - INFO - Processed 121400000 reads so far
2011-05-19 19:59:47,291 - INFO - Processed 121500000 reads so far
2011-05-19 19:59:59,557 - INFO - Processed 121600000 reads so far
2011-05-19 20:00:09,239 - INFO - Processed 121700000 reads so far
2011-05-19 20:00:21,008 - INFO - Processed 121800000 reads so far
2011-05-19 20:00:33,046 - INFO - Processed 121900000 reads so far
2011-05-19 20:00:45,776 - INFO - Processed 122000000 reads so far
2011-05-19 20:00:51,894 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:122990189-143010189
2011-05-19 20:00:57,331 - INFO - Processed 122100000 reads so far
2011-05-19 20:01:08,677 - INFO - Processed 122200000 reads so far
2011-05-19 20:01:22,365 - INFO - Processed 122300000 reads so far
2011-05-19 20:01:35,454 - INFO - Processed 122400000 reads so far
2011-05-19 20:01:49,933 - INFO - Processed 122500000 reads so far
2011-05-19 20:01:53,945 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8_random:0-20010032
2011-05-19 20:01:58,572 - INFO - Processed 122600000 reads so far
2011-05-19 20:02:09,255 - INFO - Processed 122700000 reads so far
2011-05-19 20:02:10,082 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:2989942-23009942
2011-05-19 20:02:19,186 - INFO - Processed 122800000 reads so far
2011-05-19 20:02:28,089 - INFO - Processed 122900000 reads so far
2011-05-19 20:02:40,010 - INFO - Processed 123000000 reads so far
2011-05-19 20:02:50,824 - INFO - Processed 123100000 reads so far
2011-05-19 20:02:59,755 - INFO - Processed 123200000 reads so far
2011-05-19 20:03:08,322 - INFO - Processed 123300000 reads so far
2011-05-19 20:03:16,304 - INFO - Processed 123400000 reads so far
2011-05-19 20:03:28,283 - INFO - Processed 123500000 reads so far
2011-05-19 20:03:35,250 - INFO - Processed 123600000 reads so far
2011-05-19 20:03:43,417 - INFO - Processed 123700000 reads so far
2011-05-19 20:03:53,251 - INFO - Processed 123800000 reads so far
2011-05-19 20:04:02,097 - INFO - Processed 123900000 reads so far
2011-05-19 20:04:10,608 - INFO - Processed 124000000 reads so far
2011-05-19 20:04:17,895 - INFO - Processed 124100000 reads so far
2011-05-19 20:04:26,641 - INFO - Processed 124200000 reads so far
2011-05-19 20:04:34,137 - INFO - Processed 124300000 reads so far
2011-05-19 20:04:41,785 - INFO - Processed 124400000 reads so far
2011-05-19 20:04:49,353 - INFO - Processed 124500000 reads so far
2011-05-19 20:04:56,932 - INFO - Processed 124600000 reads so far
2011-05-19 20:05:03,484 - INFO - Processed 124700000 reads so far
2011-05-19 20:05:12,661 - INFO - Processed 124800000 reads so far
2011-05-19 20:05:18,595 - INFO - Processed 124900000 reads so far
2011-05-19 20:05:26,273 - INFO - Processed 125000000 reads so far
2011-05-19 20:05:34,689 - INFO - Processed 125100000 reads so far
2011-05-19 20:05:41,485 - INFO - Processed 125200000 reads so far
2011-05-19 20:05:49,247 - INFO - Processed 125300000 reads so far
2011-05-19 20:05:59,740 - INFO - Processed 125400000 reads so far
2011-05-19 20:06:09,030 - INFO - Processed 125500000 reads so far
2011-05-19 20:06:18,828 - INFO - Processed 125600000 reads so far
2011-05-19 20:06:28,984 - INFO - Processed 125700000 reads so far
2011-05-19 20:06:39,322 - INFO - Processed 125800000 reads so far
2011-05-19 20:06:48,209 - INFO - Processed 125900000 reads so far
2011-05-19 20:06:57,224 - INFO - Processed 126000000 reads so far
2011-05-19 20:07:06,506 - INFO - Processed 126100000 reads so far
2011-05-19 20:07:16,867 - INFO - Processed 126200000 reads so far
2011-05-19 20:07:25,614 - INFO - Processed 126300000 reads so far
2011-05-19 20:07:34,314 - INFO - Processed 126400000 reads so far
2011-05-19 20:07:43,627 - INFO - Processed 126500000 reads so far
2011-05-19 20:07:52,982 - INFO - Processed 126600000 reads so far
2011-05-19 20:08:01,963 - INFO - Processed 126700000 reads so far
2011-05-19 20:08:11,053 - INFO - Processed 126800000 reads so far
2011-05-19 20:08:20,719 - INFO - Processed 126900000 reads so far
2011-05-19 20:08:29,931 - INFO - Processed 127000000 reads so far
2011-05-19 20:08:39,450 - INFO - Processed 127100000 reads so far
2011-05-19 20:08:49,404 - INFO - Processed 127200000 reads so far
2011-05-19 20:08:59,650 - INFO - Processed 127300000 reads so far
2011-05-19 20:09:08,827 - INFO - Processed 127400000 reads so far
2011-05-19 20:09:18,147 - INFO - Processed 127500000 reads so far
2011-05-19 20:09:27,048 - INFO - Processed 127600000 reads so far
2011-05-19 20:09:37,825 - INFO - Processed 127700000 reads so far
2011-05-19 20:09:47,472 - INFO - Processed 127800000 reads so far
2011-05-19 20:09:56,961 - INFO - Processed 127900000 reads so far
2011-05-19 20:10:07,724 - INFO - Processed 128000000 reads so far
2011-05-19 20:10:17,748 - INFO - Processed 128100000 reads so far
2011-05-19 20:10:26,802 - INFO - Processed 128200000 reads so far
2011-05-19 20:10:39,661 - INFO - Processed 128300000 reads so far
2011-05-19 20:10:52,328 - INFO - Processed 128400000 reads so far
2011-05-19 20:11:04,049 - INFO - Processed 128500000 reads so far
2011-05-19 20:11:14,143 - INFO - Processed 128600000 reads so far
2011-05-19 20:11:21,906 - INFO - Processed 128700000 reads so far
2011-05-19 20:11:30,786 - INFO - Processed 128800000 reads so far
2011-05-19 20:11:39,537 - INFO - Processed 128900000 reads so far
2011-05-19 20:11:51,205 - INFO - Processed 129000000 reads so far
2011-05-19 20:11:59,197 - INFO - Processed 129100000 reads so far
2011-05-19 20:12:08,226 - INFO - Processed 129200000 reads so far
2011-05-19 20:12:17,619 - INFO - Processed 129300000 reads so far
2011-05-19 20:12:27,248 - INFO - Processed 129400000 reads so far
2011-05-19 20:12:35,519 - INFO - Processed 129500000 reads so far
2011-05-19 20:12:44,883 - INFO - Processed 129600000 reads so far
2011-05-19 20:12:52,307 - INFO - Processed 129700000 reads so far
2011-05-19 20:13:04,486 - INFO - Processed 129800000 reads so far
2011-05-19 20:13:12,984 - INFO - Processed 129900000 reads so far
2011-05-19 20:13:21,350 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:22989949-43009949
2011-05-19 20:13:22,367 - INFO - Processed 130000000 reads so far
2011-05-19 20:13:30,165 - INFO - Processed 130100000 reads so far
2011-05-19 20:13:41,195 - INFO - Processed 130200000 reads so far
2011-05-19 20:13:48,934 - INFO - Processed 130300000 reads so far
2011-05-19 20:13:57,595 - INFO - Processed 130400000 reads so far
2011-05-19 20:14:07,273 - INFO - Processed 130500000 reads so far
2011-05-19 20:14:17,065 - INFO - Processed 130600000 reads so far
2011-05-19 20:14:23,502 - INFO - Processed 130700000 reads so far
2011-05-19 20:14:34,401 - INFO - Processed 130800000 reads so far
2011-05-19 20:14:43,082 - INFO - Processed 130900000 reads so far
2011-05-19 20:14:51,350 - INFO - Processed 131000000 reads so far
2011-05-19 20:14:58,437 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:42989966-63009966
2011-05-19 20:14:59,970 - INFO - Processed 131100000 reads so far
2011-05-19 20:15:11,773 - INFO - Processed 131200000 reads so far
2011-05-19 20:15:24,196 - INFO - Processed 131300000 reads so far
2011-05-19 20:15:35,091 - INFO - Processed 131400000 reads so far
2011-05-19 20:15:42,400 - INFO - Processed 131500000 reads so far
2011-05-19 20:16:00,015 - INFO - Processed 131600000 reads so far
2011-05-19 20:16:11,365 - INFO - Processed 131700000 reads so far
2011-05-19 20:16:23,245 - INFO - Processed 131800000 reads so far
2011-05-19 20:16:37,938 - INFO - Processed 131900000 reads so far
2011-05-19 20:16:50,427 - INFO - Processed 132000000 reads so far
2011-05-19 20:17:02,204 - INFO - Processed 132100000 reads so far
2011-05-19 20:17:05,766 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:62989978-83009978
2011-05-19 20:17:14,720 - INFO - Processed 132200000 reads so far
2011-05-19 20:17:26,203 - INFO - Processed 132300000 reads so far
2011-05-19 20:17:37,168 - INFO - Processed 132400000 reads so far
2011-05-19 20:17:48,341 - INFO - Processed 132500000 reads so far
2011-05-19 20:18:00,555 - INFO - Processed 132600000 reads so far
2011-05-19 20:18:14,040 - INFO - Processed 132700000 reads so far
2011-05-19 20:18:22,703 - INFO - Processed 132800000 reads so far
2011-05-19 20:18:34,179 - INFO - Processed 132900000 reads so far
2011-05-19 20:18:43,618 - INFO - Processed 133000000 reads so far
2011-05-19 20:18:52,477 - INFO - Processed 133100000 reads so far
2011-05-19 20:18:52,580 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:82990066-103010066
2011-05-19 20:19:00,832 - INFO - Processed 133200000 reads so far
2011-05-19 20:19:10,647 - INFO - Processed 133300000 reads so far
2011-05-19 20:19:19,274 - INFO - Processed 133400000 reads so far
2011-05-19 20:19:29,965 - INFO - Processed 133500000 reads so far
2011-05-19 20:19:39,445 - INFO - Processed 133600000 reads so far
2011-05-19 20:19:49,337 - INFO - Processed 133700000 reads so far
2011-05-19 20:20:00,010 - INFO - Processed 133800000 reads so far
2011-05-19 20:20:10,795 - INFO - Processed 133900000 reads so far
2011-05-19 20:20:21,971 - INFO - Processed 134000000 reads so far
2011-05-19 20:20:29,617 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:102990080-123010080
2011-05-19 20:20:34,972 - INFO - Processed 134100000 reads so far
2011-05-19 20:20:44,231 - INFO - Processed 134200000 reads so far
2011-05-19 20:20:53,275 - INFO - Processed 134300000 reads so far
2011-05-19 20:21:01,846 - INFO - Processed 134400000 reads so far
2011-05-19 20:21:22,188 - INFO - Processed 134500000 reads so far
2011-05-19 20:21:32,164 - INFO - Processed 134600000 reads so far
2011-05-19 20:21:43,380 - INFO - Processed 134700000 reads so far
2011-05-19 20:21:56,513 - INFO - Processed 134800000 reads so far
2011-05-19 20:22:08,993 - INFO - Processed 134900000 reads so far
2011-05-19 20:22:20,933 - INFO - Processed 135000000 reads so far
2011-05-19 20:22:31,729 - INFO - Processed 135100000 reads so far
2011-05-19 20:22:33,595 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:122990089-143010089
2011-05-19 20:22:39,435 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9_random:0-20010009
2011-05-19 20:22:42,569 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrM:0-20010000
2011-05-19 20:22:42,663 - INFO - Processed 135200000 reads so far
2011-05-19 20:22:48,580 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrUn_random:0-20010000
2011-05-19 20:22:52,589 - INFO - Processed 135300000 reads so far
2011-05-19 20:23:05,898 - INFO - Processed 135400000 reads so far
2011-05-19 20:23:15,909 - INFO - Processed 135500000 reads so far
2011-05-19 20:23:25,955 - INFO - Processed 135600000 reads so far
2011-05-19 20:23:32,117 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:2989998-23009998
2011-05-19 20:23:35,688 - INFO - Processed 135700000 reads so far
2011-05-19 20:23:45,845 - INFO - Processed 135800000 reads so far
2011-05-19 20:23:55,409 - INFO - Processed 135900000 reads so far
2011-05-19 20:24:09,199 - INFO - Processed 136000000 reads so far
2011-05-19 20:24:20,396 - INFO - Processed 136100000 reads so far
2011-05-19 20:24:31,822 - INFO - Processed 136200000 reads so far
2011-05-19 20:24:45,981 - INFO - Processed 136300000 reads so far
2011-05-19 20:24:58,419 - INFO - Processed 136400000 reads so far
2011-05-19 20:25:06,783 - INFO - Processed 136500000 reads so far
2011-05-19 20:25:18,391 - INFO - Processed 136600000 reads so far
2011-05-19 20:25:28,266 - INFO - Processed 136700000 reads so far
2011-05-19 20:25:39,015 - INFO - Processed 136800000 reads so far
2011-05-19 20:25:42,215 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:22990004-43010004
2011-05-19 20:25:50,475 - INFO - Processed 136900000 reads so far
2011-05-19 20:26:00,655 - INFO - Processed 137000000 reads so far
2011-05-19 20:26:11,243 - INFO - Processed 137100000 reads so far
2011-05-19 20:26:22,061 - INFO - Processed 137200000 reads so far
2011-05-19 20:26:30,814 - INFO - Processed 137300000 reads so far
2011-05-19 20:26:42,339 - INFO - Processed 137400000 reads so far
2011-05-19 20:26:52,399 - INFO - Processed 137500000 reads so far
2011-05-19 20:27:00,267 - INFO - Processed 137600000 reads so far
2011-05-19 20:27:09,692 - INFO - Processed 137700000 reads so far
2011-05-19 20:27:22,812 - INFO - Processed 137800000 reads so far
2011-05-19 20:27:30,622 - INFO - Processed 137900000 reads so far
2011-05-19 20:27:38,579 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:42990023-63010023
2011-05-19 20:27:39,668 - INFO - Processed 138000000 reads so far
2011-05-19 20:27:47,889 - INFO - Processed 138100000 reads so far
2011-05-19 20:28:08,154 - INFO - Processed 138200000 reads so far
2011-05-19 20:28:19,659 - INFO - Processed 138300000 reads so far
2011-05-19 20:28:30,460 - INFO - Processed 138400000 reads so far
2011-05-19 20:28:42,213 - INFO - Processed 138500000 reads so far
2011-05-19 20:28:52,976 - INFO - Processed 138600000 reads so far
2011-05-19 20:29:04,698 - INFO - Processed 138700000 reads so far
2011-05-19 20:29:11,805 - INFO - Processed 138800000 reads so far
2011-05-19 20:29:20,200 - INFO - Processed 138900000 reads so far
2011-05-19 20:29:22,330 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:62990061-83010061
2011-05-19 20:29:30,410 - INFO - Processed 139000000 reads so far
2011-05-19 20:29:41,383 - INFO - Processed 139100000 reads so far
2011-05-19 20:29:52,312 - INFO - Processed 139200000 reads so far
2011-05-19 20:30:00,854 - INFO - Processed 139300000 reads so far
2011-05-19 20:30:11,683 - INFO - Processed 139400000 reads so far
2011-05-19 20:30:22,757 - INFO - Processed 139500000 reads so far
2011-05-19 20:30:34,022 - INFO - Processed 139600000 reads so far
2011-05-19 20:30:46,238 - INFO - Processed 139700000 reads so far
2011-05-19 20:30:57,718 - INFO - Processed 139800000 reads so far
2011-05-19 20:31:06,540 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:82990069-103010069
2011-05-19 20:31:09,280 - INFO - Processed 139900000 reads so far
2011-05-19 20:31:21,436 - INFO - Processed 140000000 reads so far
2011-05-19 20:31:33,307 - INFO - Processed 140100000 reads so far
2011-05-19 20:31:44,868 - INFO - Processed 140200000 reads so far
2011-05-19 20:31:59,480 - INFO - Processed 140300000 reads so far
2011-05-19 20:32:10,800 - INFO - Processed 140400000 reads so far
2011-05-19 20:32:22,186 - INFO - Processed 140500000 reads so far
2011-05-19 20:32:34,091 - INFO - Processed 140600000 reads so far
2011-05-19 20:32:45,538 - INFO - Processed 140700000 reads so far
2011-05-19 20:32:57,091 - INFO - Processed 140800000 reads so far
2011-05-19 20:32:58,891 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:102990108-123010108
2011-05-19 20:33:09,147 - INFO - Processed 140900000 reads so far
2011-05-19 20:33:22,773 - INFO - Processed 141000000 reads so far
2011-05-19 20:33:35,008 - INFO - Processed 141100000 reads so far
2011-05-19 20:33:47,076 - INFO - Processed 141200000 reads so far
2011-05-19 20:33:58,433 - INFO - Processed 141300000 reads so far
2011-05-19 20:34:10,160 - INFO - Processed 141400000 reads so far
2011-05-19 20:34:21,764 - INFO - Processed 141500000 reads so far
2011-05-19 20:34:34,105 - INFO - Processed 141600000 reads so far
2011-05-19 20:34:43,936 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:122990145-143010145
2011-05-19 20:34:45,511 - INFO - Processed 141700000 reads so far
2011-05-19 20:34:59,226 - INFO - Processed 141800000 reads so far
2011-05-19 20:35:10,734 - INFO - Processed 141900000 reads so far
2011-05-19 20:35:22,420 - INFO - Processed 142000000 reads so far
2011-05-19 20:35:34,807 - INFO - Processed 142100000 reads so far
2011-05-19 20:35:46,177 - INFO - Processed 142200000 reads so far
2011-05-19 20:35:58,033 - INFO - Processed 142300000 reads so far
2011-05-19 20:36:09,541 - INFO - Processed 142400000 reads so far
2011-05-19 20:36:20,274 - INFO - Processed 142500000 reads so far
2011-05-19 20:36:31,085 - INFO - Processed 142600000 reads so far
2011-05-19 20:36:37,999 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:142990149-163010149
2011-05-19 20:36:42,289 - INFO - Processed 142700000 reads so far
2011-05-19 20:36:50,869 - INFO - Processed 142800000 reads so far
2011-05-19 20:37:00,063 - INFO - Processed 142900000 reads so far
2011-05-19 20:37:10,762 - INFO - Processed 143000000 reads so far
2011-05-19 20:37:20,016 - INFO - Processed 143100000 reads so far
2011-05-19 20:37:29,082 - INFO - Processed 143200000 reads so far
2011-05-19 20:37:39,237 - INFO - Processed 143300000 reads so far
2011-05-19 20:37:48,088 - INFO - Processed 143400000 reads so far
2011-05-19 20:37:57,046 - INFO - Processed 143500000 reads so far
2011-05-19 20:38:03,368 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:162990206-183010206
2011-05-19 20:38:05,828 - INFO - Processed 143600000 reads so far
2011-05-19 20:38:14,708 - INFO - Processed 143700000 reads so far
2011-05-19 20:38:22,916 - INFO - Processed 143800000 reads so far
2011-05-19 20:38:27,714 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX_random:0-20010000
2011-05-19 20:38:33,435 - INFO - Processed 143900000 reads so far
2011-05-19 20:38:35,287 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY:0-20016539
2011-05-19 20:38:36,676 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:0-20012819
2011-05-19 20:38:41,247 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:19992912-40012912
2011-05-19 20:38:44,772 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:40027332-60047332
2011-05-19 20:38:45,959 - INFO - Processed 144000000 reads so far
2011-05-19 20:38:51,488 - INFO - Processed 144100000 reads so far
2011-05-19 20:38:54,865 - INFO - Processed 144200000 reads so far
2011-05-19 20:38:58,912 - INFO - Processed 144300000 reads so far
2011-05-19 20:39:02,575 - INFO - Processed 144400000 reads so far
2011-05-19 20:39:07,449 - INFO - Processed 144500000 reads so far
2011-05-19 20:39:11,344 - INFO - Processed 144600000 reads so far
2011-05-19 20:39:14,197 - INFO - Processed 144700000 reads so far
2011-05-19 20:39:17,941 - INFO - Processed 144800000 reads so far
2011-05-19 20:39:21,519 - INFO - Processed 144900000 reads so far
2011-05-19 20:39:26,608 - INFO - Processed 145000000 reads so far
2011-05-19 20:39:30,640 - INFO - Processed 145100000 reads so far
2011-05-19 20:39:34,641 - INFO - Processed 145200000 reads so far
2011-05-19 20:39:38,068 - INFO - Processed 145300000 reads so far
2011-05-19 20:39:43,469 - INFO - Processed 145400000 reads so far
2011-05-19 20:39:46,770 - INFO - Processed 145500000 reads so far
2011-05-19 20:39:49,924 - INFO - Processed 145600000 reads so far
2011-05-19 20:39:54,425 - INFO - Processed 145700000 reads so far
2011-05-19 20:39:57,792 - INFO - Processed 145800000 reads so far
2011-05-19 20:40:01,786 - INFO - Processed 145900000 reads so far
2011-05-19 20:40:05,800 - INFO - Processed 146000000 reads so far
2011-05-19 20:40:09,149 - INFO - Processed 146100000 reads so far
2011-05-19 20:40:10,592 - INFO - Finished loading data. Outputting QC metrics
2011-05-19 20:40:29,419 - INFO - Finished outputting QC metrics
2011-05-19 20:40:29,520 - INFO - Finished generating QC metrics