2011-05-20 01:30:40,026 - INFO - Generating QC metrics for BAM File ['WTCHG_11730.bam']
2011-05-20 01:30:40,026 - INFO - Output will go to WTCHG_11730.qc.txt.tmp
2011-05-20 01:30:40,026 - INFO - Reading GC Map from file /data/Genomes/gcMap/Mouse37.gcMap.gz
2011-05-20 01:33:36,096 - INFO - Finished reading GC Map
2011-05-20 01:33:36,096 - INFO - Reading CDS from exon definition file /data/Genomes/annotation/Mouse37.refGene.txt.gz
2011-05-20 01:33:39,036 - INFO - Read 382138 exons (33804740 nucleotides) for 32 chromosomes
2011-05-20 01:33:39,038 - INFO - Computing coverage cut-off
2011-05-20 01:33:39,038 - INFO - Retrieving BAM file coverage info from samtools pileup
2011-05-20 01:33:44,083 - INFO - Processed 1000000 pile-up sites
2011-05-20 01:33:50,972 - INFO - Processed 2000000 pile-up sites
2011-05-20 01:33:54,749 - INFO - Processed 3000000 pile-up sites
2011-05-20 01:33:58,747 - INFO - Processed 4000000 pile-up sites
2011-05-20 01:34:03,257 - INFO - Processed 5000000 pile-up sites
2011-05-20 01:34:05,170 - INFO - Processed 6000000 pile-up sites
2011-05-20 01:34:08,227 - INFO - Processed 7000000 pile-up sites
2011-05-20 01:34:12,018 - INFO - Processed 8000000 pile-up sites
2011-05-20 01:34:16,483 - INFO - Processed 9000000 pile-up sites
2011-05-20 01:34:20,516 - INFO - Processed 10000000 pile-up sites
2011-05-20 01:34:26,144 - INFO - Processed 11000000 pile-up sites
2011-05-20 01:34:30,000 - INFO - Processed 12000000 pile-up sites
2011-05-20 01:34:33,979 - INFO - Processed 13000000 pile-up sites
2011-05-20 01:34:37,862 - INFO - Processed 14000000 pile-up sites
2011-05-20 01:34:41,759 - INFO - Processed 15000000 pile-up sites
2011-05-20 01:34:45,983 - INFO - Processed 16000000 pile-up sites
2011-05-20 01:34:50,164 - INFO - Processed 17000000 pile-up sites
2011-05-20 01:34:54,032 - INFO - Processed 18000000 pile-up sites
2011-05-20 01:34:58,913 - INFO - Processed 19000000 pile-up sites
2011-05-20 01:35:03,050 - INFO - Processed 20000000 pile-up sites
2011-05-20 01:35:06,966 - INFO - Processed 21000000 pile-up sites
2011-05-20 01:35:10,935 - INFO - Processed 22000000 pile-up sites
2011-05-20 01:35:14,917 - INFO - Processed 23000000 pile-up sites
2011-05-20 01:35:19,338 - INFO - Processed 24000000 pile-up sites
2011-05-20 01:35:23,265 - INFO - Processed 25000000 pile-up sites
2011-05-20 01:35:27,007 - INFO - Processed 26000000 pile-up sites
2011-05-20 01:35:31,388 - INFO - Processed 27000000 pile-up sites
2011-05-20 01:35:34,960 - INFO - Processed 28000000 pile-up sites
2011-05-20 01:35:38,517 - INFO - Processed 29000000 pile-up sites
2011-05-20 01:35:42,361 - INFO - Processed 30000000 pile-up sites
2011-05-20 01:35:45,558 - INFO - Processed 31000000 pile-up sites
2011-05-20 01:35:49,866 - INFO - Processed 32000000 pile-up sites
2011-05-20 01:35:54,441 - INFO - Processed 33000000 pile-up sites
2011-05-20 01:35:58,933 - INFO - Processed 34000000 pile-up sites
2011-05-20 01:36:02,671 - INFO - Processed 35000000 pile-up sites
2011-05-20 01:36:06,453 - INFO - Processed 36000000 pile-up sites
2011-05-20 01:36:10,237 - INFO - Processed 37000000 pile-up sites
2011-05-20 01:36:14,101 - INFO - Processed 38000000 pile-up sites
2011-05-20 01:36:18,237 - INFO - Processed 39000000 pile-up sites
2011-05-20 01:36:22,103 - INFO - Processed 40000000 pile-up sites
2011-05-20 01:36:22,600 - INFO - Finished processing pile-up on 40117713 sites (200000003 nucleotides)
2011-05-20 01:36:22,600 - INFO - Coverage cut-off value is 21
2011-05-20 01:36:22,600 - INFO - Loading data into QC data manager
2011-05-20 01:36:22,799 - WARNING - Found RG tag 'SM' (value: 246) duplicated in CO field (value: 037/11) -- ignoring CO value
2011-05-20 01:36:22,799 - WARNING - Found RG tag 'ID' (value: WTCHG_11730) duplicated in CO field (value: 037/11) -- ignoring CO value
2011-05-20 01:36:22,799 - WARNING - Found RG tag 'SM' (value: 246) duplicated in CO field (value: 037/11) -- ignoring CO value
2011-05-20 01:36:22,799 - WARNING - Found RG tag 'ID' (value: WTCHG_11730) duplicated in CO field (value: 037/11) -- ignoring CO value
2011-05-20 01:36:22,800 - WARNING - Found RG tag 'SM' (value: 246) duplicated in CO field (value: 037/11) -- ignoring CO value
2011-05-20 01:36:22,800 - WARNING - Found RG tag 'ID' (value: WTCHG_11730) duplicated in CO field (value: 037/11) -- ignoring CO value
2011-05-20 01:36:22,800 - WARNING - Found RG tag 'SM' (value: 246) duplicated in CO field (value: 037/11) -- ignoring CO value
2011-05-20 01:36:22,800 - WARNING - Found RG tag 'ID' (value: WTCHG_11730) duplicated in CO field (value: 037/11) -- ignoring CO value
2011-05-20 01:36:22,857 - WARNING - Found RG tag 'SM' (value: 246) duplicated in CO field (value: 037/11) -- ignoring CO value
2011-05-20 01:36:22,857 - WARNING - Found RG tag 'ID' (value: WTCHG_11730) duplicated in CO field (value: 037/11) -- ignoring CO value
2011-05-20 01:36:22,857 - WARNING - Found RG tag 'SM' (value: 246) duplicated in CO field (value: 037/11) -- ignoring CO value
2011-05-20 01:36:22,858 - WARNING - Found RG tag 'ID' (value: WTCHG_11730) duplicated in CO field (value: 037/11) -- ignoring CO value
2011-05-20 01:36:22,858 - WARNING - Found RG tag 'SM' (value: 246) duplicated in CO field (value: 037/11) -- ignoring CO value
2011-05-20 01:36:22,858 - WARNING - Found RG tag 'ID' (value: WTCHG_11730) duplicated in CO field (value: 037/11) -- ignoring CO value
2011-05-20 01:36:22,858 - WARNING - Found RG tag 'SM' (value: 246) duplicated in CO field (value: 037/11) -- ignoring CO value
2011-05-20 01:36:22,858 - WARNING - Found RG tag 'ID' (value: WTCHG_11730) duplicated in CO field (value: 037/11) -- ignoring CO value
2011-05-20 01:36:22,868 - INFO - Reading data from BAM file WTCHG_11730.bam. All reads in file will be read
2011-05-20 01:36:22,910 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:2990026-23010026
2011-05-20 01:36:33,121 - INFO - Processed 100000 reads so far
2011-05-20 01:36:44,343 - INFO - Processed 200000 reads so far
2011-05-20 01:36:52,199 - INFO - Processed 300000 reads so far
2011-05-20 01:37:00,001 - INFO - Processed 400000 reads so far
2011-05-20 01:37:11,167 - INFO - Processed 500000 reads so far
2011-05-20 01:37:22,308 - INFO - Processed 600000 reads so far
2011-05-20 01:37:33,562 - INFO - Processed 700000 reads so far
2011-05-20 01:37:44,803 - INFO - Processed 800000 reads so far
2011-05-20 01:37:56,096 - INFO - Processed 900000 reads so far
2011-05-20 01:38:05,002 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:22990030-43010030
2011-05-20 01:38:07,568 - INFO - Processed 1000000 reads so far
2011-05-20 01:38:18,845 - INFO - Processed 1100000 reads so far
2011-05-20 01:38:29,511 - INFO - Processed 1200000 reads so far
2011-05-20 01:38:38,962 - INFO - Processed 1300000 reads so far
2011-05-20 01:38:49,903 - INFO - Processed 1400000 reads so far
2011-05-20 01:39:01,145 - INFO - Processed 1500000 reads so far
2011-05-20 01:39:10,953 - INFO - Processed 1600000 reads so far
2011-05-20 01:39:21,390 - INFO - Processed 1700000 reads so far
2011-05-20 01:39:32,509 - INFO - Processed 1800000 reads so far
2011-05-20 01:39:42,251 - INFO - Processed 1900000 reads so far
2011-05-20 01:39:44,601 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:42990036-63010036
2011-05-20 01:39:51,020 - INFO - Processed 2000000 reads so far
2011-05-20 01:40:02,195 - INFO - Processed 2100000 reads so far
2011-05-20 01:40:13,516 - INFO - Processed 2200000 reads so far
2011-05-20 01:40:24,391 - INFO - Processed 2300000 reads so far
2011-05-20 01:40:36,816 - INFO - Processed 2400000 reads so far
2011-05-20 01:40:47,920 - INFO - Processed 2500000 reads so far
2011-05-20 01:40:55,928 - INFO - Processed 2600000 reads so far
2011-05-20 01:41:04,513 - INFO - Processed 2700000 reads so far
2011-05-20 01:41:13,425 - INFO - Processed 2800000 reads so far
2011-05-20 01:41:21,382 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:62990057-83010057
2011-05-20 01:41:23,279 - INFO - Processed 2900000 reads so far
2011-05-20 01:41:31,791 - INFO - Processed 3000000 reads so far
2011-05-20 01:41:40,518 - INFO - Processed 3100000 reads so far
2011-05-20 01:41:48,887 - INFO - Processed 3200000 reads so far
2011-05-20 01:41:57,787 - INFO - Processed 3300000 reads so far
2011-05-20 01:42:06,274 - INFO - Processed 3400000 reads so far
2011-05-20 01:42:16,760 - INFO - Processed 3500000 reads so far
2011-05-20 01:42:25,618 - INFO - Processed 3600000 reads so far
2011-05-20 01:42:35,148 - INFO - Processed 3700000 reads so far
2011-05-20 01:42:44,727 - INFO - Processed 3800000 reads so far
2011-05-20 01:42:54,210 - INFO - Processed 3900000 reads so far
2011-05-20 01:42:54,531 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:82990091-103010091
2011-05-20 01:43:06,858 - INFO - Processed 4000000 reads so far
2011-05-20 01:43:16,877 - INFO - Processed 4100000 reads so far
2011-05-20 01:43:28,011 - INFO - Processed 4200000 reads so far
2011-05-20 01:43:37,632 - INFO - Processed 4300000 reads so far
2011-05-20 01:43:47,164 - INFO - Processed 4400000 reads so far
2011-05-20 01:43:59,327 - INFO - Processed 4500000 reads so far
2011-05-20 01:44:09,143 - INFO - Processed 4600000 reads so far
2011-05-20 01:44:20,502 - INFO - Processed 4700000 reads so far
2011-05-20 01:44:31,256 - INFO - Processed 4800000 reads so far
2011-05-20 01:44:39,256 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:102990093-123010093
2011-05-20 01:44:42,096 - INFO - Processed 4900000 reads so far
2011-05-20 01:44:52,752 - INFO - Processed 5000000 reads so far
2011-05-20 01:45:03,148 - INFO - Processed 5100000 reads so far
2011-05-20 01:45:12,205 - INFO - Processed 5200000 reads so far
2011-05-20 01:45:23,999 - INFO - Processed 5300000 reads so far
2011-05-20 01:45:35,297 - INFO - Processed 5400000 reads so far
2011-05-20 01:45:43,772 - INFO - Processed 5500000 reads so far
2011-05-20 01:45:52,392 - INFO - Processed 5600000 reads so far
2011-05-20 01:46:00,865 - INFO - Processed 5700000 reads so far
2011-05-20 01:46:10,738 - INFO - Processed 5800000 reads so far
2011-05-20 01:46:11,640 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:122990105-143010105
2011-05-20 01:46:21,376 - INFO - Processed 5900000 reads so far
2011-05-20 01:46:30,131 - INFO - Processed 6000000 reads so far
2011-05-20 01:46:41,069 - INFO - Processed 6100000 reads so far
2011-05-20 01:46:45,871 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:2989998-23009998
2011-05-20 01:46:50,465 - INFO - Processed 6200000 reads so far
2011-05-20 01:46:59,805 - INFO - Processed 6300000 reads so far
2011-05-20 01:47:07,870 - INFO - Processed 6400000 reads so far
2011-05-20 01:47:18,889 - INFO - Processed 6500000 reads so far
2011-05-20 01:47:28,767 - INFO - Processed 6600000 reads so far
2011-05-20 01:47:37,640 - INFO - Processed 6700000 reads so far
2011-05-20 01:47:47,008 - INFO - Processed 6800000 reads so far
2011-05-20 01:47:56,970 - INFO - Processed 6900000 reads so far
2011-05-20 01:48:08,185 - INFO - Processed 7000000 reads so far
2011-05-20 01:48:20,548 - INFO - Processed 7100000 reads so far
2011-05-20 01:48:31,296 - INFO - Processed 7200000 reads so far
2011-05-20 01:48:44,575 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:22990060-43010060
2011-05-20 01:48:45,763 - INFO - Processed 7300000 reads so far
2011-05-20 01:48:56,798 - INFO - Processed 7400000 reads so far
2011-05-20 01:49:07,460 - INFO - Processed 7500000 reads so far
2011-05-20 01:49:16,322 - INFO - Processed 7600000 reads so far
2011-05-20 01:49:25,781 - INFO - Processed 7700000 reads so far
2011-05-20 01:49:34,293 - INFO - Processed 7800000 reads so far
2011-05-20 01:49:47,950 - INFO - Processed 7900000 reads so far
2011-05-20 01:50:00,814 - INFO - Processed 8000000 reads so far
2011-05-20 01:50:13,941 - INFO - Processed 8100000 reads so far
2011-05-20 01:50:25,409 - INFO - Processed 8200000 reads so far
2011-05-20 01:50:29,755 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:42990072-63010072
2011-05-20 01:50:36,917 - INFO - Processed 8300000 reads so far
2011-05-20 01:50:49,995 - INFO - Processed 8400000 reads so far
2011-05-20 01:51:01,409 - INFO - Processed 8500000 reads so far
2011-05-20 01:51:14,329 - INFO - Processed 8600000 reads so far
2011-05-20 01:51:25,740 - INFO - Processed 8700000 reads so far
2011-05-20 01:51:37,213 - INFO - Processed 8800000 reads so far
2011-05-20 01:51:48,388 - INFO - Processed 8900000 reads so far
2011-05-20 01:51:59,062 - INFO - Processed 9000000 reads so far
2011-05-20 01:52:09,799 - INFO - Processed 9100000 reads so far
2011-05-20 01:52:22,023 - INFO - Processed 9200000 reads so far
2011-05-20 01:52:32,007 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:62990077-83010077
2011-05-20 01:52:32,878 - INFO - Processed 9300000 reads so far
2011-05-20 01:52:43,455 - INFO - Processed 9400000 reads so far
2011-05-20 01:52:55,112 - INFO - Processed 9500000 reads so far
2011-05-20 01:53:06,666 - INFO - Processed 9600000 reads so far
2011-05-20 01:53:19,795 - INFO - Processed 9700000 reads so far
2011-05-20 01:53:30,601 - INFO - Processed 9800000 reads so far
2011-05-20 01:53:40,545 - INFO - Processed 9900000 reads so far
2011-05-20 01:53:51,332 - INFO - Processed 10000000 reads so far
2011-05-20 01:54:02,577 - INFO - Processed 10100000 reads so far
2011-05-20 01:54:11,961 - INFO - Processed 10200000 reads so far
2011-05-20 01:54:22,170 - INFO - Processed 10300000 reads so far
2011-05-20 01:54:27,503 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:82990121-103010121
2011-05-20 01:54:32,719 - INFO - Processed 10400000 reads so far
2011-05-20 01:54:42,615 - INFO - Processed 10500000 reads so far
2011-05-20 01:54:53,204 - INFO - Processed 10600000 reads so far
2011-05-20 01:55:03,953 - INFO - Processed 10700000 reads so far
2011-05-20 01:55:13,159 - INFO - Processed 10800000 reads so far
2011-05-20 01:55:22,475 - INFO - Processed 10900000 reads so far
2011-05-20 01:55:31,879 - INFO - Processed 11000000 reads so far
2011-05-20 01:55:40,497 - INFO - Processed 11100000 reads so far
2011-05-20 01:55:48,134 - INFO - Processed 11200000 reads so far
2011-05-20 01:56:00,917 - INFO - Processed 11300000 reads so far
2011-05-20 01:56:07,190 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:102990147-123010147
2011-05-20 01:56:10,916 - INFO - Processed 11400000 reads so far
2011-05-20 01:56:21,825 - INFO - Processed 11500000 reads so far
2011-05-20 01:56:31,087 - INFO - Processed 11600000 reads so far
2011-05-20 01:56:42,215 - INFO - Processed 11700000 reads so far
2011-05-20 01:56:50,662 - INFO - Processed 11800000 reads so far
2011-05-20 01:57:01,231 - INFO - Processed 11900000 reads so far
2011-05-20 01:57:12,407 - INFO - Processed 12000000 reads so far
2011-05-20 01:57:21,572 - INFO - Processed 12100000 reads so far
2011-05-20 01:57:29,676 - INFO - Processed 12200000 reads so far
2011-05-20 01:57:38,465 - INFO - Processed 12300000 reads so far
2011-05-20 01:57:46,455 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:2990011-23010011
2011-05-20 01:57:47,767 - INFO - Processed 12400000 reads so far
2011-05-20 01:57:55,153 - INFO - Processed 12500000 reads so far
2011-05-20 01:58:03,785 - INFO - Processed 12600000 reads so far
2011-05-20 01:58:12,034 - INFO - Processed 12700000 reads so far
2011-05-20 01:58:21,905 - INFO - Processed 12800000 reads so far
2011-05-20 01:58:31,366 - INFO - Processed 12900000 reads so far
2011-05-20 01:58:40,945 - INFO - Processed 13000000 reads so far
2011-05-20 01:58:51,374 - INFO - Processed 13100000 reads so far
2011-05-20 01:59:01,659 - INFO - Processed 13200000 reads so far
2011-05-20 01:59:11,662 - INFO - Processed 13300000 reads so far
2011-05-20 01:59:19,909 - INFO - Processed 13400000 reads so far
2011-05-20 01:59:28,852 - INFO - Processed 13500000 reads so far
2011-05-20 01:59:30,280 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:22990233-43010233
2011-05-20 01:59:37,223 - INFO - Processed 13600000 reads so far
2011-05-20 01:59:46,144 - INFO - Processed 13700000 reads so far
2011-05-20 01:59:57,343 - INFO - Processed 13800000 reads so far
2011-05-20 02:00:09,472 - INFO - Processed 13900000 reads so far
2011-05-20 02:00:18,811 - INFO - Processed 14000000 reads so far
2011-05-20 02:00:26,296 - INFO - Processed 14100000 reads so far
2011-05-20 02:00:34,320 - INFO - Processed 14200000 reads so far
2011-05-20 02:00:43,073 - INFO - Processed 14300000 reads so far
2011-05-20 02:00:51,962 - INFO - Processed 14400000 reads so far
2011-05-20 02:00:56,896 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:42990326-63010326
2011-05-20 02:01:01,999 - INFO - Processed 14500000 reads so far
2011-05-20 02:01:10,189 - INFO - Processed 14600000 reads so far
2011-05-20 02:01:20,474 - INFO - Processed 14700000 reads so far
2011-05-20 02:01:34,985 - INFO - Processed 14800000 reads so far
2011-05-20 02:01:45,541 - INFO - Processed 14900000 reads so far
2011-05-20 02:01:55,856 - INFO - Processed 15000000 reads so far
2011-05-20 02:02:06,568 - INFO - Processed 15100000 reads so far
2011-05-20 02:02:14,957 - INFO - Processed 15200000 reads so far
2011-05-20 02:02:22,311 - INFO - Processed 15300000 reads so far
2011-05-20 02:02:25,157 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:62990353-83010353
2011-05-20 02:02:29,367 - INFO - Processed 15400000 reads so far
2011-05-20 02:02:40,569 - INFO - Processed 15500000 reads so far
2011-05-20 02:02:51,653 - INFO - Processed 15600000 reads so far
2011-05-20 02:03:03,970 - INFO - Processed 15700000 reads so far
2011-05-20 02:03:13,962 - INFO - Processed 15800000 reads so far
2011-05-20 02:03:22,467 - INFO - Processed 15900000 reads so far
2011-05-20 02:03:30,895 - INFO - Processed 16000000 reads so far
2011-05-20 02:03:38,502 - INFO - Processed 16100000 reads so far
2011-05-20 02:03:46,067 - INFO - Processed 16200000 reads so far
2011-05-20 02:03:57,341 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:82990374-103010374
2011-05-20 02:03:57,456 - INFO - Processed 16300000 reads so far
2011-05-20 02:04:07,231 - INFO - Processed 16400000 reads so far
2011-05-20 02:04:15,217 - INFO - Processed 16500000 reads so far
2011-05-20 02:04:24,143 - INFO - Processed 16600000 reads so far
2011-05-20 02:04:32,387 - INFO - Processed 16700000 reads so far
2011-05-20 02:04:41,167 - INFO - Processed 16800000 reads so far
2011-05-20 02:04:51,493 - INFO - Processed 16900000 reads so far
2011-05-20 02:05:01,538 - INFO - Processed 17000000 reads so far
2011-05-20 02:05:09,728 - INFO - Processed 17100000 reads so far
2011-05-20 02:05:18,346 - INFO - Processed 17200000 reads so far
2011-05-20 02:05:26,401 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:102990414-123010414
2011-05-20 02:05:29,393 - INFO - Processed 17300000 reads so far
2011-05-20 02:05:39,420 - INFO - Processed 17400000 reads so far
2011-05-20 02:05:48,747 - INFO - Processed 17500000 reads so far
2011-05-20 02:05:55,737 - INFO - Processed 17600000 reads so far
2011-05-20 02:06:02,653 - INFO - Processed 17700000 reads so far
2011-05-20 02:06:11,498 - INFO - Processed 17800000 reads so far
2011-05-20 02:06:23,144 - INFO - Processed 17900000 reads so far
2011-05-20 02:06:34,280 - INFO - Processed 18000000 reads so far
2011-05-20 02:06:46,030 - INFO - Processed 18100000 reads so far
2011-05-20 02:06:55,494 - INFO - Processed 18200000 reads so far
2011-05-20 02:07:04,622 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:2990022-23010022
2011-05-20 02:07:05,049 - INFO - Processed 18300000 reads so far
2011-05-20 02:07:11,789 - INFO - Processed 18400000 reads so far
2011-05-20 02:07:22,908 - INFO - Processed 18500000 reads so far
2011-05-20 02:07:31,296 - INFO - Processed 18600000 reads so far
2011-05-20 02:07:40,524 - INFO - Processed 18700000 reads so far
2011-05-20 02:07:51,242 - INFO - Processed 18800000 reads so far
2011-05-20 02:08:00,342 - INFO - Processed 18900000 reads so far
2011-05-20 02:08:09,812 - INFO - Processed 19000000 reads so far
2011-05-20 02:08:19,344 - INFO - Processed 19100000 reads so far
2011-05-20 02:08:27,815 - INFO - Processed 19200000 reads so far
2011-05-20 02:08:29,806 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:22990035-43010035
2011-05-20 02:08:38,045 - INFO - Processed 19300000 reads so far
2011-05-20 02:08:48,684 - INFO - Processed 19400000 reads so far
2011-05-20 02:08:57,777 - INFO - Processed 19500000 reads so far
2011-05-20 02:09:06,995 - INFO - Processed 19600000 reads so far
2011-05-20 02:09:14,988 - INFO - Processed 19700000 reads so far
2011-05-20 02:09:25,479 - INFO - Processed 19800000 reads so far
2011-05-20 02:09:49,568 - INFO - Processed 19900000 reads so far
2011-05-20 02:10:12,045 - INFO - Processed 20000000 reads so far
2011-05-20 02:10:19,393 - INFO - Processed 20100000 reads so far
2011-05-20 02:10:37,249 - INFO - Processed 20200000 reads so far
2011-05-20 02:10:42,040 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:42990079-63010079
2011-05-20 02:10:47,732 - INFO - Processed 20300000 reads so far
2011-05-20 02:10:54,545 - INFO - Processed 20400000 reads so far
2011-05-20 02:11:01,851 - INFO - Processed 20500000 reads so far
2011-05-20 02:11:09,699 - INFO - Processed 20600000 reads so far
2011-05-20 02:11:28,687 - INFO - Processed 20700000 reads so far
2011-05-20 02:11:53,523 - INFO - Processed 20800000 reads so far
2011-05-20 02:12:07,607 - INFO - Processed 20900000 reads so far
2011-05-20 02:12:18,903 - INFO - Processed 21000000 reads so far
2011-05-20 02:12:31,364 - INFO - Processed 21100000 reads so far
2011-05-20 02:12:52,487 - INFO - Processed 21200000 reads so far
2011-05-20 02:13:01,266 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:62990110-83010110
2011-05-20 02:13:03,268 - INFO - Processed 21300000 reads so far
2011-05-20 02:13:32,269 - INFO - Processed 21400000 reads so far
2011-05-20 02:13:47,343 - INFO - Processed 21500000 reads so far
2011-05-20 02:13:57,926 - INFO - Processed 21600000 reads so far
2011-05-20 02:14:15,757 - INFO - Processed 21700000 reads so far
2011-05-20 02:14:28,781 - INFO - Processed 21800000 reads so far
2011-05-20 02:14:40,242 - INFO - Processed 21900000 reads so far
2011-05-20 02:14:59,078 - INFO - Processed 22000000 reads so far
2011-05-20 02:15:10,669 - INFO - Processed 22100000 reads so far
2011-05-20 02:15:43,285 - INFO - Processed 22200000 reads so far
2011-05-20 02:15:47,709 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:82990127-103010127
2011-05-20 02:15:51,195 - INFO - Processed 22300000 reads so far
2011-05-20 02:16:03,978 - INFO - Processed 22400000 reads so far
2011-05-20 02:16:13,851 - INFO - Processed 22500000 reads so far
2011-05-20 02:16:25,021 - INFO - Processed 22600000 reads so far
2011-05-20 02:16:38,439 - INFO - Processed 22700000 reads so far
2011-05-20 02:16:49,704 - INFO - Processed 22800000 reads so far
2011-05-20 02:17:00,655 - INFO - Processed 22900000 reads so far
2011-05-20 02:17:12,258 - INFO - Processed 23000000 reads so far
2011-05-20 02:17:23,286 - INFO - Processed 23100000 reads so far
2011-05-20 02:17:31,787 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:102990137-123010137
2011-05-20 02:17:34,864 - INFO - Processed 23200000 reads so far
2011-05-20 02:17:46,323 - INFO - Processed 23300000 reads so far
2011-05-20 02:17:58,024 - INFO - Processed 23400000 reads so far
2011-05-20 02:18:09,241 - INFO - Processed 23500000 reads so far
2011-05-20 02:18:20,577 - INFO - Processed 23600000 reads so far
2011-05-20 02:18:31,740 - INFO - Processed 23700000 reads so far
2011-05-20 02:18:42,280 - INFO - Processed 23800000 reads so far
2011-05-20 02:18:52,020 - INFO - Processed 23900000 reads so far
2011-05-20 02:19:04,030 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13_random:0-20010000
2011-05-20 02:19:04,717 - INFO - Processed 24000000 reads so far
2011-05-20 02:19:05,236 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:2990092-23010092
2011-05-20 02:19:17,431 - INFO - Processed 24100000 reads so far
2011-05-20 02:19:30,383 - INFO - Processed 24200000 reads so far
2011-05-20 02:19:41,611 - INFO - Processed 24300000 reads so far
2011-05-20 02:19:50,682 - INFO - Processed 24400000 reads so far
2011-05-20 02:20:02,150 - INFO - Processed 24500000 reads so far
2011-05-20 02:20:12,371 - INFO - Processed 24600000 reads so far
2011-05-20 02:20:23,040 - INFO - Processed 24700000 reads so far
2011-05-20 02:20:34,779 - INFO - Processed 24800000 reads so far
2011-05-20 02:20:46,052 - INFO - Processed 24900000 reads so far
2011-05-20 02:20:46,380 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:22990126-43010126
2011-05-20 02:20:57,001 - INFO - Processed 25000000 reads so far
2011-05-20 02:21:05,894 - INFO - Processed 25100000 reads so far
2011-05-20 02:21:17,759 - INFO - Processed 25200000 reads so far
2011-05-20 02:21:27,077 - INFO - Processed 25300000 reads so far
2011-05-20 02:21:40,554 - INFO - Processed 25400000 reads so far
2011-05-20 02:21:50,689 - INFO - Processed 25500000 reads so far
2011-05-20 02:21:58,959 - INFO - Processed 25600000 reads so far
2011-05-20 02:22:07,137 - INFO - Processed 25700000 reads so far
2011-05-20 02:22:16,268 - INFO - Processed 25800000 reads so far
2011-05-20 02:22:26,778 - INFO - Processed 25900000 reads so far
2011-05-20 02:22:30,169 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:42990137-63010137
2011-05-20 02:22:36,830 - INFO - Processed 26000000 reads so far
2011-05-20 02:22:43,817 - INFO - Processed 26100000 reads so far
2011-05-20 02:22:52,299 - INFO - Processed 26200000 reads so far
2011-05-20 02:23:02,957 - INFO - Processed 26300000 reads so far
2011-05-20 02:23:11,263 - INFO - Processed 26400000 reads so far
2011-05-20 02:23:20,730 - INFO - Processed 26500000 reads so far
2011-05-20 02:23:31,616 - INFO - Processed 26600000 reads so far
2011-05-20 02:23:41,415 - INFO - Processed 26700000 reads so far
2011-05-20 02:23:49,720 - INFO - Processed 26800000 reads so far
2011-05-20 02:23:57,904 - INFO - Processed 26900000 reads so far
2011-05-20 02:23:59,965 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:62990156-83010156
2011-05-20 02:24:06,261 - INFO - Processed 27000000 reads so far
2011-05-20 02:24:13,039 - INFO - Processed 27100000 reads so far
2011-05-20 02:24:24,213 - INFO - Processed 27200000 reads so far
2011-05-20 02:24:34,448 - INFO - Processed 27300000 reads so far
2011-05-20 02:24:44,082 - INFO - Processed 27400000 reads so far
2011-05-20 02:24:54,696 - INFO - Processed 27500000 reads so far
2011-05-20 02:25:04,748 - INFO - Processed 27600000 reads so far
2011-05-20 02:25:16,056 - INFO - Processed 27700000 reads so far
2011-05-20 02:25:24,710 - INFO - Processed 27800000 reads so far
2011-05-20 02:25:35,274 - INFO - Processed 27900000 reads so far
2011-05-20 02:25:40,250 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:82990157-103010157
2011-05-20 02:25:45,286 - INFO - Processed 28000000 reads so far
2011-05-20 02:25:56,263 - INFO - Processed 28100000 reads so far
2011-05-20 02:26:06,602 - INFO - Processed 28200000 reads so far
2011-05-20 02:26:19,107 - INFO - Processed 28300000 reads so far
2011-05-20 02:26:30,658 - INFO - Processed 28400000 reads so far
2011-05-20 02:26:40,176 - INFO - Processed 28500000 reads so far
2011-05-20 02:26:50,336 - INFO - Processed 28600000 reads so far
2011-05-20 02:27:00,403 - INFO - Processed 28700000 reads so far
2011-05-20 02:27:09,991 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:102990173-123010173
2011-05-20 02:27:11,103 - INFO - Processed 28800000 reads so far
2011-05-20 02:27:22,730 - INFO - Processed 28900000 reads so far
2011-05-20 02:27:32,261 - INFO - Processed 29000000 reads so far
2011-05-20 02:27:41,522 - INFO - Processed 29100000 reads so far
2011-05-20 02:27:52,452 - INFO - Processed 29200000 reads so far
2011-05-20 02:28:01,228 - INFO - Processed 29300000 reads so far
2011-05-20 02:28:10,767 - INFO - Processed 29400000 reads so far
2011-05-20 02:28:18,032 - INFO - Processed 29500000 reads so far
2011-05-20 02:28:26,394 - INFO - Processed 29600000 reads so far
2011-05-20 02:28:34,041 - INFO - Processed 29700000 reads so far
2011-05-20 02:28:34,134 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:122990198-143010198
2011-05-20 02:28:44,757 - INFO - Processed 29800000 reads so far
2011-05-20 02:28:44,829 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:2990002-23010002
2011-05-20 02:28:54,242 - INFO - Processed 29900000 reads so far
2011-05-20 02:29:02,561 - INFO - Processed 30000000 reads so far
2011-05-20 02:29:10,897 - INFO - Processed 30100000 reads so far
2011-05-20 02:29:18,225 - INFO - Processed 30200000 reads so far
2011-05-20 02:29:29,086 - INFO - Processed 30300000 reads so far
2011-05-20 02:29:38,596 - INFO - Processed 30400000 reads so far
2011-05-20 02:29:48,183 - INFO - Processed 30500000 reads so far
2011-05-20 02:29:57,184 - INFO - Processed 30600000 reads so far
2011-05-20 02:30:04,506 - INFO - Processed 30700000 reads so far
2011-05-20 02:30:04,904 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:22990030-43010030
2011-05-20 02:30:13,789 - INFO - Processed 30800000 reads so far
2011-05-20 02:30:23,183 - INFO - Processed 30900000 reads so far
2011-05-20 02:30:32,312 - INFO - Processed 31000000 reads so far
2011-05-20 02:30:41,176 - INFO - Processed 31100000 reads so far
2011-05-20 02:30:48,886 - INFO - Processed 31200000 reads so far
2011-05-20 02:30:57,297 - INFO - Processed 31300000 reads so far
2011-05-20 02:31:11,766 - INFO - Processed 31400000 reads so far
2011-05-20 02:31:20,393 - INFO - Processed 31500000 reads so far
2011-05-20 02:31:32,222 - INFO - Processed 31600000 reads so far
2011-05-20 02:31:39,105 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:42990070-63010070
2011-05-20 02:31:42,849 - INFO - Processed 31700000 reads so far
2011-05-20 02:31:55,653 - INFO - Processed 31800000 reads so far
2011-05-20 02:32:05,320 - INFO - Processed 31900000 reads so far
2011-05-20 02:32:18,691 - INFO - Processed 32000000 reads so far
2011-05-20 02:32:28,774 - INFO - Processed 32100000 reads so far
2011-05-20 02:32:38,121 - INFO - Processed 32200000 reads so far
2011-05-20 02:32:48,110 - INFO - Processed 32300000 reads so far
2011-05-20 02:32:59,468 - INFO - Processed 32400000 reads so far
2011-05-20 02:33:10,993 - INFO - Processed 32500000 reads so far
2011-05-20 02:33:22,191 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:62990094-83010094
2011-05-20 02:33:22,805 - INFO - Processed 32600000 reads so far
2011-05-20 02:33:31,074 - INFO - Processed 32700000 reads so far
2011-05-20 02:33:42,680 - INFO - Processed 32800000 reads so far
2011-05-20 02:33:51,584 - INFO - Processed 32900000 reads so far
2011-05-20 02:34:00,810 - INFO - Processed 33000000 reads so far
2011-05-20 02:34:10,452 - INFO - Processed 33100000 reads so far
2011-05-20 02:34:21,717 - INFO - Processed 33200000 reads so far
2011-05-20 02:34:33,967 - INFO - Processed 33300000 reads so far
2011-05-20 02:34:44,639 - INFO - Processed 33400000 reads so far
2011-05-20 02:34:55,501 - INFO - Processed 33500000 reads so far
2011-05-20 02:35:06,020 - INFO - Processed 33600000 reads so far
2011-05-20 02:35:14,014 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:82990102-103010102
2011-05-20 02:35:16,063 - INFO - Processed 33700000 reads so far
2011-05-20 02:35:27,313 - INFO - Processed 33800000 reads so far
2011-05-20 02:35:34,274 - INFO - Processed 33900000 reads so far
2011-05-20 02:35:44,784 - INFO - Processed 34000000 reads so far
2011-05-20 02:35:56,507 - INFO - Processed 34100000 reads so far
2011-05-20 02:36:07,187 - INFO - Processed 34200000 reads so far
2011-05-20 02:36:16,716 - INFO - Processed 34300000 reads so far
2011-05-20 02:36:27,801 - INFO - Processed 34400000 reads so far
2011-05-20 02:36:39,338 - INFO - Processed 34500000 reads so far
2011-05-20 02:36:54,261 - INFO - Processed 34600000 reads so far
2011-05-20 02:37:04,805 - INFO - Processed 34700000 reads so far
2011-05-20 02:37:10,791 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:102990140-123010140
2011-05-20 02:37:13,427 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:2990096-23010096
2011-05-20 02:37:15,079 - INFO - Processed 34800000 reads so far
2011-05-20 02:37:25,587 - INFO - Processed 34900000 reads so far
2011-05-20 02:37:34,618 - INFO - Processed 35000000 reads so far
2011-05-20 02:37:45,201 - INFO - Processed 35100000 reads so far
2011-05-20 02:37:57,020 - INFO - Processed 35200000 reads so far
2011-05-20 02:38:08,055 - INFO - Processed 35300000 reads so far
2011-05-20 02:38:18,869 - INFO - Processed 35400000 reads so far
2011-05-20 02:38:29,728 - INFO - Processed 35500000 reads so far
2011-05-20 02:38:38,530 - INFO - Processed 35600000 reads so far
2011-05-20 02:38:48,617 - INFO - Processed 35700000 reads so far
2011-05-20 02:38:57,014 - INFO - Processed 35800000 reads so far
2011-05-20 02:39:05,569 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:22990119-43010119
2011-05-20 02:39:07,632 - INFO - Processed 35900000 reads so far
2011-05-20 02:39:17,694 - INFO - Processed 36000000 reads so far
2011-05-20 02:39:27,696 - INFO - Processed 36100000 reads so far
2011-05-20 02:39:38,709 - INFO - Processed 36200000 reads so far
2011-05-20 02:39:49,390 - INFO - Processed 36300000 reads so far
2011-05-20 02:39:58,734 - INFO - Processed 36400000 reads so far
2011-05-20 02:40:07,959 - INFO - Processed 36500000 reads so far
2011-05-20 02:40:19,162 - INFO - Processed 36600000 reads so far
2011-05-20 02:40:28,334 - INFO - Processed 36700000 reads so far
2011-05-20 02:40:38,511 - INFO - Processed 36800000 reads so far
2011-05-20 02:40:45,295 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:42990152-63010152
2011-05-20 02:40:49,331 - INFO - Processed 36900000 reads so far
2011-05-20 02:40:59,532 - INFO - Processed 37000000 reads so far
2011-05-20 02:41:10,985 - INFO - Processed 37100000 reads so far
2011-05-20 02:41:19,565 - INFO - Processed 37200000 reads so far
2011-05-20 02:41:31,277 - INFO - Processed 37300000 reads so far
2011-05-20 02:41:42,925 - INFO - Processed 37400000 reads so far
2011-05-20 02:41:52,612 - INFO - Processed 37500000 reads so far
2011-05-20 02:42:01,388 - INFO - Processed 37600000 reads so far
2011-05-20 02:42:10,831 - INFO - Processed 37700000 reads so far
2011-05-20 02:42:17,044 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:62990155-83010155
2011-05-20 02:42:20,968 - INFO - Processed 37800000 reads so far
2011-05-20 02:42:30,946 - INFO - Processed 37900000 reads so far
2011-05-20 02:42:40,584 - INFO - Processed 38000000 reads so far
2011-05-20 02:42:50,073 - INFO - Processed 38100000 reads so far
2011-05-20 02:43:00,908 - INFO - Processed 38200000 reads so far
2011-05-20 02:43:11,758 - INFO - Processed 38300000 reads so far
2011-05-20 02:43:21,784 - INFO - Processed 38400000 reads so far
2011-05-20 02:43:31,899 - INFO - Processed 38500000 reads so far
2011-05-20 02:43:41,140 - INFO - Processed 38600000 reads so far
2011-05-20 02:43:43,384 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:82990170-103010170
2011-05-20 02:43:49,580 - INFO - Processed 38700000 reads so far
2011-05-20 02:43:58,826 - INFO - Processed 38800000 reads so far
2011-05-20 02:44:06,761 - INFO - Processed 38900000 reads so far
2011-05-20 02:44:14,268 - INFO - Processed 39000000 reads so far
2011-05-20 02:44:22,647 - INFO - Processed 39100000 reads so far
2011-05-20 02:44:31,106 - INFO - Processed 39200000 reads so far
2011-05-20 02:44:41,506 - INFO - Processed 39300000 reads so far
2011-05-20 02:44:50,438 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16_random:0-20010084
2011-05-20 02:44:50,463 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:2989968-23009968
2011-05-20 02:44:50,627 - INFO - Processed 39400000 reads so far
2011-05-20 02:44:58,100 - INFO - Processed 39500000 reads so far
2011-05-20 02:45:08,766 - INFO - Processed 39600000 reads so far
2011-05-20 02:45:18,241 - INFO - Processed 39700000 reads so far
2011-05-20 02:45:25,470 - INFO - Processed 39800000 reads so far
2011-05-20 02:45:33,857 - INFO - Processed 39900000 reads so far
2011-05-20 02:45:41,228 - INFO - Processed 40000000 reads so far
2011-05-20 02:45:48,815 - INFO - Processed 40100000 reads so far
2011-05-20 02:45:59,189 - INFO - Processed 40200000 reads so far
2011-05-20 02:46:09,518 - INFO - Processed 40300000 reads so far
2011-05-20 02:46:20,302 - INFO - Processed 40400000 reads so far
2011-05-20 02:46:23,605 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:22989999-43009999
2011-05-20 02:46:28,757 - INFO - Processed 40500000 reads so far
2011-05-20 02:46:40,037 - INFO - Processed 40600000 reads so far
2011-05-20 02:46:53,255 - INFO - Processed 40700000 reads so far
2011-05-20 02:47:00,384 - INFO - Processed 40800000 reads so far
2011-05-20 02:47:09,160 - INFO - Processed 40900000 reads so far
2011-05-20 02:47:51,402 - INFO - Processed 41000000 reads so far
2011-05-20 02:48:02,432 - INFO - Processed 41100000 reads so far
2011-05-20 02:48:12,761 - INFO - Processed 41200000 reads so far
2011-05-20 02:48:23,508 - INFO - Processed 41300000 reads so far
2011-05-20 02:48:30,942 - INFO - Processed 41400000 reads so far
2011-05-20 02:48:39,951 - INFO - Processed 41500000 reads so far
2011-05-20 02:48:45,789 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:42990002-63010002
2011-05-20 02:48:50,238 - INFO - Processed 41600000 reads so far
2011-05-20 02:49:01,061 - INFO - Processed 41700000 reads so far
2011-05-20 02:49:11,594 - INFO - Processed 41800000 reads so far
2011-05-20 02:49:19,681 - INFO - Processed 41900000 reads so far
2011-05-20 02:49:28,348 - INFO - Processed 42000000 reads so far
2011-05-20 02:49:36,252 - INFO - Processed 42100000 reads so far
2011-05-20 02:49:45,276 - INFO - Processed 42200000 reads so far
2011-05-20 02:49:54,641 - INFO - Processed 42300000 reads so far
2011-05-20 02:50:02,194 - INFO - Processed 42400000 reads so far
2011-05-20 02:50:12,348 - INFO - Processed 42500000 reads so far
2011-05-20 02:50:15,162 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:62990015-83010015
2011-05-20 02:50:21,861 - INFO - Processed 42600000 reads so far
2011-05-20 02:50:30,424 - INFO - Processed 42700000 reads so far
2011-05-20 02:50:38,137 - INFO - Processed 42800000 reads so far
2011-05-20 02:50:46,976 - INFO - Processed 42900000 reads so far
2011-05-20 02:50:56,001 - INFO - Processed 43000000 reads so far
2011-05-20 02:51:04,601 - INFO - Processed 43100000 reads so far
2011-05-20 02:51:13,085 - INFO - Processed 43200000 reads so far
2011-05-20 02:51:20,933 - INFO - Processed 43300000 reads so far
2011-05-20 02:51:29,271 - INFO - Processed 43400000 reads so far
2011-05-20 02:51:38,159 - INFO - Processed 43500000 reads so far
2011-05-20 02:51:39,872 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:82990140-103010140
2011-05-20 02:51:46,620 - INFO - Processed 43600000 reads so far
2011-05-20 02:51:55,272 - INFO - Processed 43700000 reads so far
2011-05-20 02:52:03,505 - INFO - Processed 43800000 reads so far
2011-05-20 02:52:11,743 - INFO - Processed 43900000 reads so far
2011-05-20 02:52:19,221 - INFO - Processed 44000000 reads so far
2011-05-20 02:52:27,652 - INFO - Processed 44100000 reads so far
2011-05-20 02:52:28,602 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17_random:0-20010032
2011-05-20 02:52:30,218 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:2990027-23010027
2011-05-20 02:52:36,545 - INFO - Processed 44200000 reads so far
2011-05-20 02:52:45,265 - INFO - Processed 44300000 reads so far
2011-05-20 02:52:53,828 - INFO - Processed 44400000 reads so far
2011-05-20 02:53:03,195 - INFO - Processed 44500000 reads so far
2011-05-20 02:53:12,217 - INFO - Processed 44600000 reads so far
2011-05-20 02:53:20,370 - INFO - Processed 44700000 reads so far
2011-05-20 02:53:29,256 - INFO - Processed 44800000 reads so far
2011-05-20 02:53:38,323 - INFO - Processed 44900000 reads so far
2011-05-20 02:53:48,387 - INFO - Processed 45000000 reads so far
2011-05-20 02:53:57,884 - INFO - Processed 45100000 reads so far
2011-05-20 02:54:00,254 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:22990039-43010039
2011-05-20 02:54:07,817 - INFO - Processed 45200000 reads so far
2011-05-20 02:54:14,882 - INFO - Processed 45300000 reads so far
2011-05-20 02:54:24,300 - INFO - Processed 45400000 reads so far
2011-05-20 02:54:34,485 - INFO - Processed 45500000 reads so far
2011-05-20 02:54:43,844 - INFO - Processed 45600000 reads so far
2011-05-20 02:54:54,164 - INFO - Processed 45700000 reads so far
2011-05-20 02:55:02,490 - INFO - Processed 45800000 reads so far
2011-05-20 02:55:11,108 - INFO - Processed 45900000 reads so far
2011-05-20 02:55:19,830 - INFO - Processed 46000000 reads so far
2011-05-20 02:55:49,378 - INFO - Processed 46100000 reads so far
2011-05-20 02:55:50,367 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:42990052-63010052
2011-05-20 02:55:57,182 - INFO - Processed 46200000 reads so far
2011-05-20 02:56:08,134 - INFO - Processed 46300000 reads so far
2011-05-20 02:56:17,111 - INFO - Processed 46400000 reads so far
2011-05-20 02:56:26,421 - INFO - Processed 46500000 reads so far
2011-05-20 02:56:34,398 - INFO - Processed 46600000 reads so far
2011-05-20 02:56:43,853 - INFO - Processed 46700000 reads so far
2011-05-20 02:56:51,328 - INFO - Processed 46800000 reads so far
2011-05-20 02:56:58,645 - INFO - Processed 46900000 reads so far
2011-05-20 02:57:07,542 - INFO - Processed 47000000 reads so far
2011-05-20 02:57:15,673 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:62990072-83010072
2011-05-20 02:57:19,443 - INFO - Processed 47100000 reads so far
2011-05-20 02:57:30,240 - INFO - Processed 47200000 reads so far
2011-05-20 02:57:41,593 - INFO - Processed 47300000 reads so far
2011-05-20 02:57:55,152 - INFO - Processed 47400000 reads so far
2011-05-20 02:58:06,435 - INFO - Processed 47500000 reads so far
2011-05-20 02:58:17,829 - INFO - Processed 47600000 reads so far
2011-05-20 02:58:29,796 - INFO - Processed 47700000 reads so far
2011-05-20 02:58:41,275 - INFO - Processed 47800000 reads so far
2011-05-20 02:58:52,547 - INFO - Processed 47900000 reads so far
2011-05-20 02:59:05,149 - INFO - Processed 48000000 reads so far
2011-05-20 02:59:14,300 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:82990083-103010083
2011-05-20 02:59:16,382 - INFO - Processed 48100000 reads so far
2011-05-20 02:59:27,401 - INFO - Processed 48200000 reads so far
2011-05-20 02:59:38,894 - INFO - Processed 48300000 reads so far
2011-05-20 02:59:49,145 - INFO - Processed 48400000 reads so far
2011-05-20 02:59:55,083 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:2990174-23010174
2011-05-20 02:59:59,507 - INFO - Processed 48500000 reads so far
2011-05-20 03:00:09,129 - INFO - Processed 48600000 reads so far
2011-05-20 03:00:20,256 - INFO - Processed 48700000 reads so far
2011-05-20 03:00:31,381 - INFO - Processed 48800000 reads so far
2011-05-20 03:00:41,323 - INFO - Processed 48900000 reads so far
2011-05-20 03:00:51,202 - INFO - Processed 49000000 reads so far
2011-05-20 03:01:00,728 - INFO - Processed 49100000 reads so far
2011-05-20 03:01:11,988 - INFO - Processed 49200000 reads so far
2011-05-20 03:01:21,430 - INFO - Processed 49300000 reads so far
2011-05-20 03:01:33,612 - INFO - Processed 49400000 reads so far
2011-05-20 03:01:37,659 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:22990212-43010212
2011-05-20 03:01:46,762 - INFO - Processed 49500000 reads so far
2011-05-20 03:01:57,515 - INFO - Processed 49600000 reads so far
2011-05-20 03:02:07,896 - INFO - Processed 49700000 reads so far
2011-05-20 03:02:17,302 - INFO - Processed 49800000 reads so far
2011-05-20 03:02:28,360 - INFO - Processed 49900000 reads so far
2011-05-20 03:02:39,050 - INFO - Processed 50000000 reads so far
2011-05-20 03:02:48,873 - INFO - Processed 50100000 reads so far
2011-05-20 03:03:00,508 - INFO - Processed 50200000 reads so far
2011-05-20 03:03:11,006 - INFO - Processed 50300000 reads so far
2011-05-20 03:03:21,485 - INFO - Processed 50400000 reads so far
2011-05-20 03:03:23,924 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:42990245-63010245
2011-05-20 03:03:32,363 - INFO - Processed 50500000 reads so far
2011-05-20 03:03:42,542 - INFO - Processed 50600000 reads so far
2011-05-20 03:03:53,315 - INFO - Processed 50700000 reads so far
2011-05-20 03:04:02,980 - INFO - Processed 50800000 reads so far
2011-05-20 03:04:13,607 - INFO - Processed 50900000 reads so far
2011-05-20 03:04:26,387 - INFO - Processed 51000000 reads so far
2011-05-20 03:04:36,543 - INFO - Processed 51100000 reads so far
2011-05-20 03:04:45,988 - INFO - Processed 51200000 reads so far
2011-05-20 03:04:56,285 - INFO - Processed 51300000 reads so far
2011-05-20 03:05:03,421 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:2989974-23009974
2011-05-20 03:05:06,529 - INFO - Processed 51400000 reads so far
2011-05-20 03:05:16,598 - INFO - Processed 51500000 reads so far
2011-05-20 03:05:28,512 - INFO - Processed 51600000 reads so far
2011-05-20 03:05:40,272 - INFO - Processed 51700000 reads so far
2011-05-20 03:05:50,604 - INFO - Processed 51800000 reads so far
2011-05-20 03:06:02,811 - INFO - Processed 51900000 reads so far
2011-05-20 03:06:13,750 - INFO - Processed 52000000 reads so far
2011-05-20 03:06:25,410 - INFO - Processed 52100000 reads so far
2011-05-20 03:06:36,172 - INFO - Processed 52200000 reads so far
2011-05-20 03:06:46,156 - INFO - Processed 52300000 reads so far
2011-05-20 03:06:46,327 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:22990096-43010096
2011-05-20 03:06:55,563 - INFO - Processed 52400000 reads so far
2011-05-20 03:07:04,645 - INFO - Processed 52500000 reads so far
2011-05-20 03:07:14,876 - INFO - Processed 52600000 reads so far
2011-05-20 03:07:24,583 - INFO - Processed 52700000 reads so far
2011-05-20 03:07:34,860 - INFO - Processed 52800000 reads so far
2011-05-20 03:07:43,867 - INFO - Processed 52900000 reads so far
2011-05-20 03:07:54,124 - INFO - Processed 53000000 reads so far
2011-05-20 03:08:04,018 - INFO - Processed 53100000 reads so far
2011-05-20 03:08:13,870 - INFO - Processed 53200000 reads so far
2011-05-20 03:08:20,658 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:42990100-63010100
2011-05-20 03:08:23,606 - INFO - Processed 53300000 reads so far
2011-05-20 03:08:32,992 - INFO - Processed 53400000 reads so far
2011-05-20 03:08:42,923 - INFO - Processed 53500000 reads so far
2011-05-20 03:08:54,008 - INFO - Processed 53600000 reads so far
2011-05-20 03:09:03,866 - INFO - Processed 53700000 reads so far
2011-05-20 03:09:12,711 - INFO - Processed 53800000 reads so far
2011-05-20 03:09:22,419 - INFO - Processed 53900000 reads so far
2011-05-20 03:09:30,694 - INFO - Processed 54000000 reads so far
2011-05-20 03:09:40,946 - INFO - Processed 54100000 reads so far
2011-05-20 03:09:51,011 - INFO - Processed 54200000 reads so far
2011-05-20 03:09:51,216 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:62990105-83010105
2011-05-20 03:10:01,407 - INFO - Processed 54300000 reads so far
2011-05-20 03:10:12,574 - INFO - Processed 54400000 reads so far
2011-05-20 03:10:23,478 - INFO - Processed 54500000 reads so far
2011-05-20 03:10:33,920 - INFO - Processed 54600000 reads so far
2011-05-20 03:10:44,388 - INFO - Processed 54700000 reads so far
2011-05-20 03:10:53,430 - INFO - Processed 54800000 reads so far
2011-05-20 03:11:06,426 - INFO - Processed 54900000 reads so far
2011-05-20 03:11:15,893 - INFO - Processed 55000000 reads so far
2011-05-20 03:11:25,214 - INFO - Processed 55100000 reads so far
2011-05-20 03:11:31,604 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:82990107-103010107
2011-05-20 03:11:34,950 - INFO - Processed 55200000 reads so far
2011-05-20 03:11:44,575 - INFO - Processed 55300000 reads so far
2011-05-20 03:11:55,283 - INFO - Processed 55400000 reads so far
2011-05-20 03:12:04,602 - INFO - Processed 55500000 reads so far
2011-05-20 03:12:15,627 - INFO - Processed 55600000 reads so far
2011-05-20 03:12:24,815 - INFO - Processed 55700000 reads so far
2011-05-20 03:12:36,152 - INFO - Processed 55800000 reads so far
2011-05-20 03:12:47,656 - INFO - Processed 55900000 reads so far
2011-05-20 03:12:57,449 - INFO - Processed 56000000 reads so far
2011-05-20 03:13:05,789 - INFO - Processed 56100000 reads so far
2011-05-20 03:13:15,579 - INFO - Processed 56200000 reads so far
2011-05-20 03:13:15,791 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:102990122-123010122
2011-05-20 03:13:26,303 - INFO - Processed 56300000 reads so far
2011-05-20 03:13:35,988 - INFO - Processed 56400000 reads so far
2011-05-20 03:13:47,207 - INFO - Processed 56500000 reads so far
2011-05-20 03:13:57,813 - INFO - Processed 56600000 reads so far
2011-05-20 03:14:08,304 - INFO - Processed 56700000 reads so far
2011-05-20 03:14:19,578 - INFO - Processed 56800000 reads so far
2011-05-20 03:14:28,463 - INFO - Processed 56900000 reads so far
2011-05-20 03:14:40,232 - INFO - Processed 57000000 reads so far
2011-05-20 03:14:50,941 - INFO - Processed 57100000 reads so far
2011-05-20 03:14:53,300 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:122990138-143010138
2011-05-20 03:15:01,019 - INFO - Processed 57200000 reads so far
2011-05-20 03:15:11,047 - INFO - Processed 57300000 reads so far
2011-05-20 03:15:19,686 - INFO - Processed 57400000 reads so far
2011-05-20 03:15:28,938 - INFO - Processed 57500000 reads so far
2011-05-20 03:15:39,547 - INFO - Processed 57600000 reads so far
2011-05-20 03:15:49,796 - INFO - Processed 57700000 reads so far
2011-05-20 03:16:00,168 - INFO - Processed 57800000 reads so far
2011-05-20 03:16:10,300 - INFO - Processed 57900000 reads so far
2011-05-20 03:16:19,075 - INFO - Processed 58000000 reads so far
2011-05-20 03:16:29,919 - INFO - Processed 58100000 reads so far
2011-05-20 03:16:32,864 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:142990141-163010141
2011-05-20 03:16:40,558 - INFO - Processed 58200000 reads so far
2011-05-20 03:16:50,317 - INFO - Processed 58300000 reads so far
2011-05-20 03:17:01,460 - INFO - Processed 58400000 reads so far
2011-05-20 03:17:12,910 - INFO - Processed 58500000 reads so far
2011-05-20 03:17:23,908 - INFO - Processed 58600000 reads so far
2011-05-20 03:17:35,308 - INFO - Processed 58700000 reads so far
2011-05-20 03:17:46,697 - INFO - Processed 58800000 reads so far
2011-05-20 03:18:01,178 - INFO - Processed 58900000 reads so far
2011-05-20 03:18:13,335 - INFO - Processed 59000000 reads so far
2011-05-20 03:18:18,301 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:162990163-183010163
2011-05-20 03:18:24,783 - INFO - Processed 59100000 reads so far
2011-05-20 03:18:36,447 - INFO - Processed 59200000 reads so far
2011-05-20 03:18:47,547 - INFO - Processed 59300000 reads so far
2011-05-20 03:18:58,996 - INFO - Processed 59400000 reads so far
2011-05-20 03:19:11,787 - INFO - Processed 59500000 reads so far
2011-05-20 03:19:22,739 - INFO - Processed 59600000 reads so far
2011-05-20 03:19:34,223 - INFO - Processed 59700000 reads so far
2011-05-20 03:19:45,901 - INFO - Processed 59800000 reads so far
2011-05-20 03:19:58,003 - INFO - Processed 59900000 reads so far
2011-05-20 03:20:09,307 - INFO - Processed 60000000 reads so far
2011-05-20 03:20:15,207 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:182990180-203010180
2011-05-20 03:20:20,677 - INFO - Processed 60100000 reads so far
2011-05-20 03:20:33,833 - INFO - Processed 60200000 reads so far
2011-05-20 03:20:45,227 - INFO - Processed 60300000 reads so far
2011-05-20 03:20:56,065 - INFO - Processed 60400000 reads so far
2011-05-20 03:21:07,187 - INFO - Processed 60500000 reads so far
2011-05-20 03:21:17,924 - INFO - Processed 60600000 reads so far
2011-05-20 03:21:29,807 - INFO - Processed 60700000 reads so far
2011-05-20 03:21:37,369 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1_random:0-20010009
2011-05-20 03:21:38,256 - INFO - Processed 60800000 reads so far
2011-05-20 03:21:47,212 - INFO - Processed 60900000 reads so far
2011-05-20 03:21:50,202 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:2990080-23010080
2011-05-20 03:21:56,855 - INFO - Processed 61000000 reads so far
2011-05-20 03:22:06,747 - INFO - Processed 61100000 reads so far
2011-05-20 03:22:16,822 - INFO - Processed 61200000 reads so far
2011-05-20 03:22:26,360 - INFO - Processed 61300000 reads so far
2011-05-20 03:22:35,670 - INFO - Processed 61400000 reads so far
2011-05-20 03:22:46,336 - INFO - Processed 61500000 reads so far
2011-05-20 03:22:56,301 - INFO - Processed 61600000 reads so far
2011-05-20 03:23:05,084 - INFO - Processed 61700000 reads so far
2011-05-20 03:23:14,387 - INFO - Processed 61800000 reads so far
2011-05-20 03:23:22,851 - INFO - Processed 61900000 reads so far
2011-05-20 03:23:24,364 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:22990088-43010088
2011-05-20 03:23:33,269 - INFO - Processed 62000000 reads so far
2011-05-20 03:23:43,316 - INFO - Processed 62100000 reads so far
2011-05-20 03:23:52,194 - INFO - Processed 62200000 reads so far
2011-05-20 03:24:01,849 - INFO - Processed 62300000 reads so far
2011-05-20 03:24:11,787 - INFO - Processed 62400000 reads so far
2011-05-20 03:24:21,395 - INFO - Processed 62500000 reads so far
2011-05-20 03:24:30,435 - INFO - Processed 62600000 reads so far
2011-05-20 03:24:40,378 - INFO - Processed 62700000 reads so far
2011-05-20 03:24:50,363 - INFO - Processed 62800000 reads so far
2011-05-20 03:25:01,130 - INFO - Processed 62900000 reads so far
2011-05-20 03:25:07,988 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:42990111-63010111
2011-05-20 03:25:11,281 - INFO - Processed 63000000 reads so far
2011-05-20 03:25:19,991 - INFO - Processed 63100000 reads so far
2011-05-20 03:25:32,996 - INFO - Processed 63200000 reads so far
2011-05-20 03:25:43,170 - INFO - Processed 63300000 reads so far
2011-05-20 03:25:53,815 - INFO - Processed 63400000 reads so far
2011-05-20 03:26:04,431 - INFO - Processed 63500000 reads so far
2011-05-20 03:26:14,154 - INFO - Processed 63600000 reads so far
2011-05-20 03:26:25,386 - INFO - Processed 63700000 reads so far
2011-05-20 03:26:35,610 - INFO - Processed 63800000 reads so far
2011-05-20 03:26:44,776 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:62990118-83010118
2011-05-20 03:26:45,834 - INFO - Processed 63900000 reads so far
2011-05-20 03:26:55,400 - INFO - Processed 64000000 reads so far
2011-05-20 03:27:05,711 - INFO - Processed 64100000 reads so far
2011-05-20 03:27:15,471 - INFO - Processed 64200000 reads so far
2011-05-20 03:27:25,040 - INFO - Processed 64300000 reads so far
2011-05-20 03:27:34,774 - INFO - Processed 64400000 reads so far
2011-05-20 03:27:44,279 - INFO - Processed 64500000 reads so far
2011-05-20 03:27:53,817 - INFO - Processed 64600000 reads so far
2011-05-20 03:28:05,132 - INFO - Processed 64700000 reads so far
2011-05-20 03:28:14,926 - INFO - Processed 64800000 reads so far
2011-05-20 03:28:17,316 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:82990143-103010143
2011-05-20 03:28:25,178 - INFO - Processed 64900000 reads so far
2011-05-20 03:28:33,637 - INFO - Processed 65000000 reads so far
2011-05-20 03:28:45,269 - INFO - Processed 65100000 reads so far
2011-05-20 03:28:55,524 - INFO - Processed 65200000 reads so far
2011-05-20 03:29:05,277 - INFO - Processed 65300000 reads so far
2011-05-20 03:29:18,139 - INFO - Processed 65400000 reads so far
2011-05-20 03:29:28,659 - INFO - Processed 65500000 reads so far
2011-05-20 03:29:37,823 - INFO - Processed 65600000 reads so far
2011-05-20 03:29:45,110 - INFO - Processed 65700000 reads so far
2011-05-20 03:29:54,097 - INFO - Processed 65800000 reads so far
2011-05-20 03:30:02,340 - INFO - Processed 65900000 reads so far
2011-05-20 03:30:11,117 - INFO - Processed 66000000 reads so far
2011-05-20 03:30:19,500 - INFO - Processed 66100000 reads so far
2011-05-20 03:30:28,766 - INFO - Processed 66200000 reads so far
2011-05-20 03:30:36,679 - INFO - Processed 66300000 reads so far
2011-05-20 03:30:44,895 - INFO - Processed 66400000 reads so far
2011-05-20 03:30:53,980 - INFO - Processed 66500000 reads so far
2011-05-20 03:31:00,692 - INFO - Processed 66600000 reads so far
2011-05-20 03:31:09,440 - INFO - Processed 66700000 reads so far
2011-05-20 03:31:16,331 - INFO - Processed 66800000 reads so far
2011-05-20 03:31:24,108 - INFO - Processed 66900000 reads so far
2011-05-20 03:31:31,368 - INFO - Processed 67000000 reads so far
2011-05-20 03:31:39,853 - INFO - Processed 67100000 reads so far
2011-05-20 03:31:48,302 - INFO - Processed 67200000 reads so far
2011-05-20 03:31:57,827 - INFO - Processed 67300000 reads so far
2011-05-20 03:32:06,504 - INFO - Processed 67400000 reads so far
2011-05-20 03:32:14,940 - INFO - Processed 67500000 reads so far
2011-05-20 03:32:23,315 - INFO - Processed 67600000 reads so far
2011-05-20 03:32:32,126 - INFO - Processed 67700000 reads so far
2011-05-20 03:32:40,503 - INFO - Processed 67800000 reads so far
2011-05-20 03:32:50,655 - INFO - Processed 67900000 reads so far
2011-05-20 03:32:59,062 - INFO - Processed 68000000 reads so far
2011-05-20 03:33:07,976 - INFO - Processed 68100000 reads so far
2011-05-20 03:33:15,609 - INFO - Processed 68200000 reads so far
2011-05-20 03:33:23,154 - INFO - Processed 68300000 reads so far
2011-05-20 03:33:31,072 - INFO - Processed 68400000 reads so far
2011-05-20 03:33:39,077 - INFO - Processed 68500000 reads so far
2011-05-20 03:33:48,442 - INFO - Processed 68600000 reads so far
2011-05-20 03:33:55,093 - INFO - Processed 68700000 reads so far
2011-05-20 03:34:03,942 - INFO - Processed 68800000 reads so far
2011-05-20 03:34:12,165 - INFO - Processed 68900000 reads so far
2011-05-20 03:34:20,779 - INFO - Processed 69000000 reads so far
2011-05-20 03:34:27,530 - INFO - Processed 69100000 reads so far
2011-05-20 03:34:35,578 - INFO - Processed 69200000 reads so far
2011-05-20 03:34:45,646 - INFO - Processed 69300000 reads so far
2011-05-20 03:34:54,817 - INFO - Processed 69400000 reads so far
2011-05-20 03:35:03,339 - INFO - Processed 69500000 reads so far
2011-05-20 03:35:12,051 - INFO - Processed 69600000 reads so far
2011-05-20 03:35:19,764 - INFO - Processed 69700000 reads so far
2011-05-20 03:35:26,552 - INFO - Processed 69800000 reads so far
2011-05-20 03:35:33,287 - INFO - Processed 69900000 reads so far
2011-05-20 03:35:39,964 - INFO - Processed 70000000 reads so far
2011-05-20 03:35:47,867 - INFO - Processed 70100000 reads so far
2011-05-20 03:35:55,661 - INFO - Processed 70200000 reads so far
2011-05-20 03:36:02,003 - INFO - Processed 70300000 reads so far
2011-05-20 03:36:09,336 - INFO - Processed 70400000 reads so far
2011-05-20 03:36:16,002 - INFO - Processed 70500000 reads so far
2011-05-20 03:36:22,654 - INFO - Processed 70600000 reads so far
2011-05-20 03:36:29,893 - INFO - Processed 70700000 reads so far
2011-05-20 03:36:37,854 - INFO - Processed 70800000 reads so far
2011-05-20 03:36:45,153 - INFO - Processed 70900000 reads so far
2011-05-20 03:36:53,865 - INFO - Processed 71000000 reads so far
2011-05-20 03:37:02,891 - INFO - Processed 71100000 reads so far
2011-05-20 03:37:09,446 - INFO - Processed 71200000 reads so far
2011-05-20 03:37:16,869 - INFO - Processed 71300000 reads so far
2011-05-20 03:37:25,631 - INFO - Processed 71400000 reads so far
2011-05-20 03:37:34,102 - INFO - Processed 71500000 reads so far
2011-05-20 03:37:41,644 - INFO - Processed 71600000 reads so far
2011-05-20 03:37:49,091 - INFO - Processed 71700000 reads so far
2011-05-20 03:37:56,622 - INFO - Processed 71800000 reads so far
2011-05-20 03:38:03,414 - INFO - Processed 71900000 reads so far
2011-05-20 03:38:11,581 - INFO - Processed 72000000 reads so far
2011-05-20 03:38:19,117 - INFO - Processed 72100000 reads so far
2011-05-20 03:38:25,957 - INFO - Processed 72200000 reads so far
2011-05-20 03:38:33,059 - INFO - Processed 72300000 reads so far
2011-05-20 03:38:41,169 - INFO - Processed 72400000 reads so far
2011-05-20 03:38:47,580 - INFO - Processed 72500000 reads so far
2011-05-20 03:38:55,351 - INFO - Processed 72600000 reads so far
2011-05-20 03:39:01,685 - INFO - Processed 72700000 reads so far
2011-05-20 03:39:10,422 - INFO - Processed 72800000 reads so far
2011-05-20 03:39:20,602 - INFO - Processed 72900000 reads so far
2011-05-20 03:39:28,335 - INFO - Processed 73000000 reads so far
2011-05-20 03:39:35,767 - INFO - Processed 73100000 reads so far
2011-05-20 03:39:42,384 - INFO - Processed 73200000 reads so far
2011-05-20 03:39:49,995 - INFO - Processed 73300000 reads so far
2011-05-20 03:39:57,896 - INFO - Processed 73400000 reads so far
2011-05-20 03:40:05,970 - INFO - Processed 73500000 reads so far
2011-05-20 03:40:14,183 - INFO - Processed 73600000 reads so far
2011-05-20 03:40:22,768 - INFO - Processed 73700000 reads so far
2011-05-20 03:40:30,219 - INFO - Processed 73800000 reads so far
2011-05-20 03:40:36,826 - INFO - Processed 73900000 reads so far
2011-05-20 03:40:43,914 - INFO - Processed 74000000 reads so far
2011-05-20 03:40:52,148 - INFO - Processed 74100000 reads so far
2011-05-20 03:40:59,532 - INFO - Processed 74200000 reads so far
2011-05-20 03:41:07,018 - INFO - Processed 74300000 reads so far
2011-05-20 03:41:13,909 - INFO - Processed 74400000 reads so far
2011-05-20 03:41:20,721 - INFO - Processed 74500000 reads so far
2011-05-20 03:41:27,991 - INFO - Processed 74600000 reads so far
2011-05-20 03:41:35,793 - INFO - Processed 74700000 reads so far
2011-05-20 03:41:43,162 - INFO - Processed 74800000 reads so far
2011-05-20 03:41:50,635 - INFO - Processed 74900000 reads so far
2011-05-20 03:41:59,822 - INFO - Processed 75000000 reads so far
2011-05-20 03:42:06,798 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:102990172-123010172
2011-05-20 03:42:11,551 - INFO - Processed 75100000 reads so far
2011-05-20 03:42:22,162 - INFO - Processed 75200000 reads so far
2011-05-20 03:42:30,989 - INFO - Processed 75300000 reads so far
2011-05-20 03:42:40,390 - INFO - Processed 75400000 reads so far
2011-05-20 03:42:49,392 - INFO - Processed 75500000 reads so far
2011-05-20 03:42:58,170 - INFO - Processed 75600000 reads so far
2011-05-20 03:43:08,644 - INFO - Processed 75700000 reads so far
2011-05-20 03:43:17,717 - INFO - Processed 75800000 reads so far
2011-05-20 03:43:26,932 - INFO - Processed 75900000 reads so far
2011-05-20 03:43:36,343 - INFO - Processed 76000000 reads so far
2011-05-20 03:43:37,992 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:122990259-143010259
2011-05-20 03:43:44,930 - INFO - Processed 76100000 reads so far
2011-05-20 03:43:54,446 - INFO - Processed 76200000 reads so far
2011-05-20 03:44:01,633 - INFO - Processed 76300000 reads so far
2011-05-20 03:44:10,592 - INFO - Processed 76400000 reads so far
2011-05-20 03:44:19,831 - INFO - Processed 76500000 reads so far
2011-05-20 03:44:29,726 - INFO - Processed 76600000 reads so far
2011-05-20 03:44:39,686 - INFO - Processed 76700000 reads so far
2011-05-20 03:44:51,609 - INFO - Processed 76800000 reads so far
2011-05-20 03:45:00,748 - INFO - Processed 76900000 reads so far
2011-05-20 03:45:11,045 - INFO - Processed 77000000 reads so far
2011-05-20 03:45:11,337 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:142990294-163010294
2011-05-20 03:45:19,242 - INFO - Processed 77100000 reads so far
2011-05-20 03:45:29,180 - INFO - Processed 77200000 reads so far
2011-05-20 03:45:38,403 - INFO - Processed 77300000 reads so far
2011-05-20 03:45:46,545 - INFO - Processed 77400000 reads so far
2011-05-20 03:45:56,950 - INFO - Processed 77500000 reads so far
2011-05-20 03:46:05,511 - INFO - Processed 77600000 reads so far
2011-05-20 03:46:17,319 - INFO - Processed 77700000 reads so far
2011-05-20 03:46:30,847 - INFO - Processed 77800000 reads so far
2011-05-20 03:46:41,894 - INFO - Processed 77900000 reads so far
2011-05-20 03:46:53,668 - INFO - Processed 78000000 reads so far
2011-05-20 03:46:58,949 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:162990307-183010307
2011-05-20 03:47:05,178 - INFO - Processed 78100000 reads so far
2011-05-20 03:47:16,494 - INFO - Processed 78200000 reads so far
2011-05-20 03:47:27,475 - INFO - Processed 78300000 reads so far
2011-05-20 03:47:39,617 - INFO - Processed 78400000 reads so far
2011-05-20 03:47:48,990 - INFO - Processed 78500000 reads so far
2011-05-20 03:48:00,306 - INFO - Processed 78600000 reads so far
2011-05-20 03:48:13,259 - INFO - Processed 78700000 reads so far
2011-05-20 03:48:24,883 - INFO - Processed 78800000 reads so far
2011-05-20 03:48:36,200 - INFO - Processed 78900000 reads so far
2011-05-20 03:48:47,893 - INFO - Processed 79000000 reads so far
2011-05-20 03:48:58,669 - INFO - Processed 79100000 reads so far
2011-05-20 03:49:03,509 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:2989998-23009998
2011-05-20 03:49:08,849 - INFO - Processed 79200000 reads so far
2011-05-20 03:49:20,650 - INFO - Processed 79300000 reads so far
2011-05-20 03:49:31,811 - INFO - Processed 79400000 reads so far
2011-05-20 03:49:42,709 - INFO - Processed 79500000 reads so far
2011-05-20 03:49:54,645 - INFO - Processed 79600000 reads so far
2011-05-20 03:50:04,351 - INFO - Processed 79700000 reads so far
2011-05-20 03:50:13,723 - INFO - Processed 79800000 reads so far
2011-05-20 03:50:24,546 - INFO - Processed 79900000 reads so far
2011-05-20 03:50:35,090 - INFO - Processed 80000000 reads so far
2011-05-20 03:50:43,753 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:22989999-43009999
2011-05-20 03:50:45,882 - INFO - Processed 80100000 reads so far
2011-05-20 03:50:55,535 - INFO - Processed 80200000 reads so far
2011-05-20 03:51:06,161 - INFO - Processed 80300000 reads so far
2011-05-20 03:51:17,049 - INFO - Processed 80400000 reads so far
2011-05-20 03:51:27,135 - INFO - Processed 80500000 reads so far
2011-05-20 03:51:36,615 - INFO - Processed 80600000 reads so far
2011-05-20 03:51:47,738 - INFO - Processed 80700000 reads so far
2011-05-20 03:51:58,249 - INFO - Processed 80800000 reads so far
2011-05-20 03:52:07,853 - INFO - Processed 80900000 reads so far
2011-05-20 03:52:14,714 - INFO - Processed 81000000 reads so far
2011-05-20 03:52:19,099 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:42990015-63010015
2011-05-20 03:52:23,878 - INFO - Processed 81100000 reads so far
2011-05-20 03:52:32,518 - INFO - Processed 81200000 reads so far
2011-05-20 03:52:39,757 - INFO - Processed 81300000 reads so far
2011-05-20 03:52:48,389 - INFO - Processed 81400000 reads so far
2011-05-20 03:52:56,963 - INFO - Processed 81500000 reads so far
2011-05-20 03:53:03,958 - INFO - Processed 81600000 reads so far
2011-05-20 03:53:12,783 - INFO - Processed 81700000 reads so far
2011-05-20 03:53:21,630 - INFO - Processed 81800000 reads so far
2011-05-20 03:53:30,528 - INFO - Processed 81900000 reads so far
2011-05-20 03:53:35,732 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:62990025-83010025
2011-05-20 03:53:38,964 - INFO - Processed 82000000 reads so far
2011-05-20 03:53:47,694 - INFO - Processed 82100000 reads so far
2011-05-20 03:53:54,569 - INFO - Processed 82200000 reads so far
2011-05-20 03:54:02,486 - INFO - Processed 82300000 reads so far
2011-05-20 03:54:09,380 - INFO - Processed 82400000 reads so far
2011-05-20 03:54:18,579 - INFO - Processed 82500000 reads so far
2011-05-20 03:54:26,639 - INFO - Processed 82600000 reads so far
2011-05-20 03:54:35,613 - INFO - Processed 82700000 reads so far
2011-05-20 03:54:47,609 - INFO - Processed 82800000 reads so far
2011-05-20 03:54:52,108 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:82990041-103010041
2011-05-20 03:54:55,076 - INFO - Processed 82900000 reads so far
2011-05-20 03:55:03,496 - INFO - Processed 83000000 reads so far
2011-05-20 03:55:12,722 - INFO - Processed 83100000 reads so far
2011-05-20 03:55:20,878 - INFO - Processed 83200000 reads so far
2011-05-20 03:55:27,698 - INFO - Processed 83300000 reads so far
2011-05-20 03:55:34,707 - INFO - Processed 83400000 reads so far
2011-05-20 03:55:41,933 - INFO - Processed 83500000 reads so far
2011-05-20 03:55:49,822 - INFO - Processed 83600000 reads so far
2011-05-20 03:55:58,697 - INFO - Processed 83700000 reads so far
2011-05-20 03:56:07,497 - INFO - Processed 83800000 reads so far
2011-05-20 03:56:13,160 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:102990112-123010112
2011-05-20 03:56:14,425 - INFO - Processed 83900000 reads so far
2011-05-20 03:56:23,075 - INFO - Processed 84000000 reads so far
2011-05-20 03:56:32,085 - INFO - Processed 84100000 reads so far
2011-05-20 03:56:40,197 - INFO - Processed 84200000 reads so far
2011-05-20 03:56:50,770 - INFO - Processed 84300000 reads so far
2011-05-20 03:56:58,293 - INFO - Processed 84400000 reads so far
2011-05-20 03:57:05,971 - INFO - Processed 84500000 reads so far
2011-05-20 03:57:12,900 - INFO - Processed 84600000 reads so far
2011-05-20 03:57:20,537 - INFO - Processed 84700000 reads so far
2011-05-20 03:57:27,412 - INFO - Processed 84800000 reads so far
2011-05-20 03:57:30,011 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:122990114-143010114
2011-05-20 03:57:34,459 - INFO - Processed 84900000 reads so far
2011-05-20 03:57:41,369 - INFO - Processed 85000000 reads so far
2011-05-20 03:57:48,242 - INFO - Processed 85100000 reads so far
2011-05-20 03:57:56,825 - INFO - Processed 85200000 reads so far
2011-05-20 03:58:06,372 - INFO - Processed 85300000 reads so far
2011-05-20 03:58:14,018 - INFO - Processed 85400000 reads so far
2011-05-20 03:58:23,988 - INFO - Processed 85500000 reads so far
2011-05-20 03:58:51,474 - INFO - Processed 85600000 reads so far
2011-05-20 03:59:00,803 - INFO - Processed 85700000 reads so far
2011-05-20 03:59:07,448 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:142990116-163010116
2011-05-20 03:59:09,584 - INFO - Processed 85800000 reads so far
2011-05-20 03:59:19,984 - INFO - Processed 85900000 reads so far
2011-05-20 03:59:27,888 - INFO - Processed 86000000 reads so far
2011-05-20 03:59:37,640 - INFO - Processed 86100000 reads so far
2011-05-20 03:59:46,860 - INFO - Processed 86200000 reads so far
2011-05-20 04:00:00,440 - INFO - Processed 86300000 reads so far
2011-05-20 04:00:11,734 - INFO - Processed 86400000 reads so far
2011-05-20 04:00:22,406 - INFO - Processed 86500000 reads so far
2011-05-20 04:00:32,998 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3_random:0-20010568
2011-05-20 04:00:33,079 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:2989975-23009975
2011-05-20 04:00:33,800 - INFO - Processed 86600000 reads so far
2011-05-20 04:00:44,440 - INFO - Processed 86700000 reads so far
2011-05-20 04:00:56,223 - INFO - Processed 86800000 reads so far
2011-05-20 04:01:06,625 - INFO - Processed 86900000 reads so far
2011-05-20 04:01:17,774 - INFO - Processed 87000000 reads so far
2011-05-20 04:01:29,249 - INFO - Processed 87100000 reads so far
2011-05-20 04:01:40,112 - INFO - Processed 87200000 reads so far
2011-05-20 04:01:50,605 - INFO - Processed 87300000 reads so far
2011-05-20 04:02:00,741 - INFO - Processed 87400000 reads so far
2011-05-20 04:02:11,075 - INFO - Processed 87500000 reads so far
2011-05-20 04:02:16,730 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:22989991-43009991
2011-05-20 04:02:21,620 - INFO - Processed 87600000 reads so far
2011-05-20 04:02:31,692 - INFO - Processed 87700000 reads so far
2011-05-20 04:02:44,750 - INFO - Processed 87800000 reads so far
2011-05-20 04:02:56,172 - INFO - Processed 87900000 reads so far
2011-05-20 04:03:09,214 - INFO - Processed 88000000 reads so far
2011-05-20 04:03:18,504 - INFO - Processed 88100000 reads so far
2011-05-20 04:03:30,658 - INFO - Processed 88200000 reads so far
2011-05-20 04:03:38,694 - INFO - Processed 88300000 reads so far
2011-05-20 04:03:47,179 - INFO - Processed 88400000 reads so far
2011-05-20 04:03:53,224 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:42989996-63009996
2011-05-20 04:03:58,391 - INFO - Processed 88500000 reads so far
2011-05-20 04:04:08,439 - INFO - Processed 88600000 reads so far
2011-05-20 04:04:17,040 - INFO - Processed 88700000 reads so far
2011-05-20 04:04:28,315 - INFO - Processed 88800000 reads so far
2011-05-20 04:04:40,043 - INFO - Processed 88900000 reads so far
2011-05-20 04:04:54,088 - INFO - Processed 89000000 reads so far
2011-05-20 04:05:05,734 - INFO - Processed 89100000 reads so far
2011-05-20 04:05:16,162 - INFO - Processed 89200000 reads so far
2011-05-20 04:05:25,286 - INFO - Processed 89300000 reads so far
2011-05-20 04:05:34,136 - INFO - Processed 89400000 reads so far
2011-05-20 04:05:39,768 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:62990002-83010002
2011-05-20 04:05:44,499 - INFO - Processed 89500000 reads so far
2011-05-20 04:05:51,365 - INFO - Processed 89600000 reads so far
2011-05-20 04:05:58,277 - INFO - Processed 89700000 reads so far
2011-05-20 04:06:06,617 - INFO - Processed 89800000 reads so far
2011-05-20 04:06:13,456 - INFO - Processed 89900000 reads so far
2011-05-20 04:06:20,497 - INFO - Processed 90000000 reads so far
2011-05-20 04:06:27,400 - INFO - Processed 90100000 reads so far
2011-05-20 04:06:36,453 - INFO - Processed 90200000 reads so far
2011-05-20 04:06:43,330 - INFO - Processed 90300000 reads so far
2011-05-20 04:06:48,282 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:82990013-103010013
2011-05-20 04:06:50,642 - INFO - Processed 90400000 reads so far
2011-05-20 04:06:59,549 - INFO - Processed 90500000 reads so far
2011-05-20 04:07:07,904 - INFO - Processed 90600000 reads so far
2011-05-20 04:07:19,530 - INFO - Processed 90700000 reads so far
2011-05-20 04:07:29,277 - INFO - Processed 90800000 reads so far
2011-05-20 04:07:37,862 - INFO - Processed 90900000 reads so far
2011-05-20 04:07:44,738 - INFO - Processed 91000000 reads so far
2011-05-20 04:07:52,946 - INFO - Processed 91100000 reads so far
2011-05-20 04:08:00,460 - INFO - Processed 91200000 reads so far
2011-05-20 04:08:08,498 - INFO - Processed 91300000 reads so far
2011-05-20 04:08:11,674 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:102990035-123010035
2011-05-20 04:08:18,433 - INFO - Processed 91400000 reads so far
2011-05-20 04:08:26,276 - INFO - Processed 91500000 reads so far
2011-05-20 04:08:33,148 - INFO - Processed 91600000 reads so far
2011-05-20 04:08:40,520 - INFO - Processed 91700000 reads so far
2011-05-20 04:08:49,753 - INFO - Processed 91800000 reads so far
2011-05-20 04:08:58,420 - INFO - Processed 91900000 reads so far
2011-05-20 04:09:06,792 - INFO - Processed 92000000 reads so far
2011-05-20 04:09:13,658 - INFO - Processed 92100000 reads so far
2011-05-20 04:09:21,562 - INFO - Processed 92200000 reads so far
2011-05-20 04:09:29,188 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:122990045-143010045
2011-05-20 04:09:31,858 - INFO - Processed 92300000 reads so far
2011-05-20 04:09:41,380 - INFO - Processed 92400000 reads so far
2011-05-20 04:09:51,706 - INFO - Processed 92500000 reads so far
2011-05-20 04:10:00,543 - INFO - Processed 92600000 reads so far
2011-05-20 04:10:10,138 - INFO - Processed 92700000 reads so far
2011-05-20 04:10:19,722 - INFO - Processed 92800000 reads so far
2011-05-20 04:10:31,773 - INFO - Processed 92900000 reads so far
2011-05-20 04:10:41,317 - INFO - Processed 93000000 reads so far
2011-05-20 04:10:52,001 - INFO - Processed 93100000 reads so far
2011-05-20 04:10:59,926 - INFO - Processed 93200000 reads so far
2011-05-20 04:11:11,877 - INFO - Processed 93300000 reads so far
2011-05-20 04:11:22,004 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:142990060-163010060
2011-05-20 04:11:23,050 - INFO - Processed 93400000 reads so far
2011-05-20 04:11:34,478 - INFO - Processed 93500000 reads so far
2011-05-20 04:11:44,531 - INFO - Processed 93600000 reads so far
2011-05-20 04:11:55,376 - INFO - Processed 93700000 reads so far
2011-05-20 04:12:05,565 - INFO - Processed 93800000 reads so far
2011-05-20 04:12:13,750 - INFO - Processed 93900000 reads so far
2011-05-20 04:12:26,373 - INFO - Processed 94000000 reads so far
2011-05-20 04:12:33,196 - INFO - Processed 94100000 reads so far
2011-05-20 04:12:38,029 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4_random:0-20010065
2011-05-20 04:12:38,778 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:2990052-23010052
2011-05-20 04:12:41,583 - INFO - Processed 94200000 reads so far
2011-05-20 04:12:52,523 - INFO - Processed 94300000 reads so far
2011-05-20 04:13:01,040 - INFO - Processed 94400000 reads so far
2011-05-20 04:13:08,122 - INFO - Processed 94500000 reads so far
2011-05-20 04:13:15,169 - INFO - Processed 94600000 reads so far
2011-05-20 04:13:22,627 - INFO - Processed 94700000 reads so far
2011-05-20 04:13:32,410 - INFO - Processed 94800000 reads so far
2011-05-20 04:13:40,871 - INFO - Processed 94900000 reads so far
2011-05-20 04:13:47,866 - INFO - Processed 95000000 reads so far
2011-05-20 04:13:55,688 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:22990547-43010547
2011-05-20 04:13:56,312 - INFO - Processed 95100000 reads so far
2011-05-20 04:14:05,524 - INFO - Processed 95200000 reads so far
2011-05-20 04:14:14,796 - INFO - Processed 95300000 reads so far
2011-05-20 04:14:22,158 - INFO - Processed 95400000 reads so far
2011-05-20 04:14:31,479 - INFO - Processed 95500000 reads so far
2011-05-20 04:14:38,722 - INFO - Processed 95600000 reads so far
2011-05-20 04:14:47,180 - INFO - Processed 95700000 reads so far
2011-05-20 04:14:55,013 - INFO - Processed 95800000 reads so far
2011-05-20 04:15:02,545 - INFO - Processed 95900000 reads so far
2011-05-20 04:15:10,011 - INFO - Processed 96000000 reads so far
2011-05-20 04:15:17,613 - INFO - Processed 96100000 reads so far
2011-05-20 04:15:19,663 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:42991720-63011720
2011-05-20 04:15:24,547 - INFO - Processed 96200000 reads so far
2011-05-20 04:15:31,705 - INFO - Processed 96300000 reads so far
2011-05-20 04:15:39,008 - INFO - Processed 96400000 reads so far
2011-05-20 04:15:46,477 - INFO - Processed 96500000 reads so far
2011-05-20 04:15:59,721 - INFO - Processed 96600000 reads so far
2011-05-20 04:16:10,976 - INFO - Processed 96700000 reads so far
2011-05-20 04:16:22,957 - INFO - Processed 96800000 reads so far
2011-05-20 04:16:37,346 - INFO - Processed 96900000 reads so far
2011-05-20 04:16:52,047 - INFO - Processed 97000000 reads so far
2011-05-20 04:16:56,822 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:62991724-83011724
2011-05-20 04:17:04,464 - INFO - Processed 97100000 reads so far
2011-05-20 04:17:18,339 - INFO - Processed 97200000 reads so far
2011-05-20 04:17:31,012 - INFO - Processed 97300000 reads so far
2011-05-20 04:17:42,799 - INFO - Processed 97400000 reads so far
2011-05-20 04:17:55,449 - INFO - Processed 97500000 reads so far
2011-05-20 04:18:08,636 - INFO - Processed 97600000 reads so far
2011-05-20 04:18:21,268 - INFO - Processed 97700000 reads so far
2011-05-20 04:18:32,615 - INFO - Processed 97800000 reads so far
2011-05-20 04:18:44,236 - INFO - Processed 97900000 reads so far
2011-05-20 04:18:51,784 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:82991777-103011777
2011-05-20 04:18:55,804 - INFO - Processed 98000000 reads so far
2011-05-20 04:19:07,187 - INFO - Processed 98100000 reads so far
2011-05-20 04:19:18,757 - INFO - Processed 98200000 reads so far
2011-05-20 04:19:28,045 - INFO - Processed 98300000 reads so far
2011-05-20 04:19:41,061 - INFO - Processed 98400000 reads so far
2011-05-20 04:19:52,437 - INFO - Processed 98500000 reads so far
2011-05-20 04:20:04,029 - INFO - Processed 98600000 reads so far
2011-05-20 04:20:17,957 - INFO - Processed 98700000 reads so far
2011-05-20 04:20:31,739 - INFO - Processed 98800000 reads so far
2011-05-20 04:20:43,132 - INFO - Processed 98900000 reads so far
2011-05-20 04:20:43,993 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:102991779-123011779
2011-05-20 04:20:55,688 - INFO - Processed 99000000 reads so far
2011-05-20 04:21:07,122 - INFO - Processed 99100000 reads so far
2011-05-20 04:21:19,190 - INFO - Processed 99200000 reads so far
2011-05-20 04:21:31,564 - INFO - Processed 99300000 reads so far
2011-05-20 04:21:43,338 - INFO - Processed 99400000 reads so far
2011-05-20 04:21:54,772 - INFO - Processed 99500000 reads so far
2011-05-20 04:22:06,278 - INFO - Processed 99600000 reads so far
2011-05-20 04:22:17,489 - INFO - Processed 99700000 reads so far
2011-05-20 04:22:29,813 - INFO - Processed 99800000 reads so far
2011-05-20 04:22:42,337 - INFO - Processed 99900000 reads so far
2011-05-20 04:22:53,822 - INFO - Processed 100000000 reads so far
2011-05-20 04:22:54,545 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:122992012-143012012
2011-05-20 04:23:05,979 - INFO - Processed 100100000 reads so far
2011-05-20 04:23:14,199 - INFO - Processed 100200000 reads so far
2011-05-20 04:23:23,178 - INFO - Processed 100300000 reads so far
2011-05-20 04:23:33,260 - INFO - Processed 100400000 reads so far
2011-05-20 04:23:43,109 - INFO - Processed 100500000 reads so far
2011-05-20 04:23:53,407 - INFO - Processed 100600000 reads so far
2011-05-20 04:24:03,605 - INFO - Processed 100700000 reads so far
2011-05-20 04:24:16,610 - INFO - Processed 100800000 reads so far
2011-05-20 04:24:27,945 - INFO - Processed 100900000 reads so far
2011-05-20 04:24:37,927 - INFO - Processed 101000000 reads so far
2011-05-20 04:24:46,029 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:142992030-163012030
2011-05-20 04:24:46,878 - INFO - Processed 101100000 reads so far
2011-05-20 04:24:58,762 - INFO - Processed 101200000 reads so far
2011-05-20 04:25:09,313 - INFO - Processed 101300000 reads so far
2011-05-20 04:25:20,429 - INFO - Processed 101400000 reads so far
2011-05-20 04:25:31,257 - INFO - Processed 101500000 reads so far
2011-05-20 04:25:39,793 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5_random:0-20010081
2011-05-20 04:25:41,044 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:2989987-23009987
2011-05-20 04:25:42,256 - INFO - Processed 101600000 reads so far
2011-05-20 04:25:54,368 - INFO - Processed 101700000 reads so far
2011-05-20 04:26:03,059 - INFO - Processed 101800000 reads so far
2011-05-20 04:26:13,368 - INFO - Processed 101900000 reads so far
2011-05-20 04:26:24,219 - INFO - Processed 102000000 reads so far
2011-05-20 04:26:34,621 - INFO - Processed 102100000 reads so far
2011-05-20 04:26:42,730 - INFO - Processed 102200000 reads so far
2011-05-20 04:26:54,067 - INFO - Processed 102300000 reads so far
2011-05-20 04:27:07,337 - INFO - Processed 102400000 reads so far
2011-05-20 04:27:16,859 - INFO - Processed 102500000 reads so far
2011-05-20 04:27:17,211 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:22989988-43009988
2011-05-20 04:27:26,870 - INFO - Processed 102600000 reads so far
2011-05-20 04:27:38,255 - INFO - Processed 102700000 reads so far
2011-05-20 04:27:50,511 - INFO - Processed 102800000 reads so far
2011-05-20 04:28:02,776 - INFO - Processed 102900000 reads so far
2011-05-20 04:28:14,149 - INFO - Processed 103000000 reads so far
2011-05-20 04:28:24,397 - INFO - Processed 103100000 reads so far
2011-05-20 04:28:33,202 - INFO - Processed 103200000 reads so far
2011-05-20 04:28:46,098 - INFO - Processed 103300000 reads so far
2011-05-20 04:28:57,423 - INFO - Processed 103400000 reads so far
2011-05-20 04:29:06,252 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:42989989-63009989
2011-05-20 04:29:08,363 - INFO - Processed 103500000 reads so far
2011-05-20 04:29:17,806 - INFO - Processed 103600000 reads so far
2011-05-20 04:29:27,505 - INFO - Processed 103700000 reads so far
2011-05-20 04:29:37,938 - INFO - Processed 103800000 reads so far
2011-05-20 04:29:47,896 - INFO - Processed 103900000 reads so far
2011-05-20 04:29:57,180 - INFO - Processed 104000000 reads so far
2011-05-20 04:30:07,622 - INFO - Processed 104100000 reads so far
2011-05-20 04:30:17,443 - INFO - Processed 104200000 reads so far
2011-05-20 04:30:26,847 - INFO - Processed 104300000 reads so far
2011-05-20 04:30:44,908 - INFO - Processed 104400000 reads so far
2011-05-20 04:30:51,984 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:62989996-83009996
2011-05-20 04:30:55,592 - INFO - Processed 104500000 reads so far
2011-05-20 04:31:06,150 - INFO - Processed 104600000 reads so far
2011-05-20 04:31:16,145 - INFO - Processed 104700000 reads so far
2011-05-20 04:31:26,390 - INFO - Processed 104800000 reads so far
2011-05-20 04:31:37,587 - INFO - Processed 104900000 reads so far
2011-05-20 04:31:49,135 - INFO - Processed 105000000 reads so far
2011-05-20 04:32:00,826 - INFO - Processed 105100000 reads so far
2011-05-20 04:32:11,627 - INFO - Processed 105200000 reads so far
2011-05-20 04:32:20,259 - INFO - Processed 105300000 reads so far
2011-05-20 04:32:28,713 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:82990007-103010007
2011-05-20 04:32:30,867 - INFO - Processed 105400000 reads so far
2011-05-20 04:32:40,309 - INFO - Processed 105500000 reads so far
2011-05-20 04:32:50,815 - INFO - Processed 105600000 reads so far
2011-05-20 04:33:03,261 - INFO - Processed 105700000 reads so far
2011-05-20 04:33:13,932 - INFO - Processed 105800000 reads so far
2011-05-20 04:33:22,648 - INFO - Processed 105900000 reads so far
2011-05-20 04:33:33,113 - INFO - Processed 106000000 reads so far
2011-05-20 04:33:44,362 - INFO - Processed 106100000 reads so far
2011-05-20 04:33:52,064 - INFO - Processed 106200000 reads so far
2011-05-20 04:34:02,236 - INFO - Processed 106300000 reads so far
2011-05-20 04:34:13,315 - INFO - Processed 106400000 reads so far
2011-05-20 04:34:17,130 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:102990014-123010014
2011-05-20 04:34:24,828 - INFO - Processed 106500000 reads so far
2011-05-20 04:34:34,699 - INFO - Processed 106600000 reads so far
2011-05-20 04:34:42,488 - INFO - Processed 106700000 reads so far
2011-05-20 04:34:50,462 - INFO - Processed 106800000 reads so far
2011-05-20 04:34:58,394 - INFO - Processed 106900000 reads so far
2011-05-20 04:35:06,568 - INFO - Processed 107000000 reads so far
2011-05-20 04:35:15,746 - INFO - Processed 107100000 reads so far
2011-05-20 04:35:25,947 - INFO - Processed 107200000 reads so far
2011-05-20 04:35:34,747 - INFO - Processed 107300000 reads so far
2011-05-20 04:35:44,749 - INFO - Processed 107400000 reads so far
2011-05-20 04:35:56,201 - INFO - Processed 107500000 reads so far
2011-05-20 04:36:06,212 - INFO - Processed 107600000 reads so far
2011-05-20 04:36:15,677 - INFO - Processed 107700000 reads so far
2011-05-20 04:36:25,983 - INFO - Processed 107800000 reads so far
2011-05-20 04:36:34,698 - INFO - Processed 107900000 reads so far
2011-05-20 04:36:43,785 - INFO - Processed 108000000 reads so far
2011-05-20 04:36:52,969 - INFO - Processed 108100000 reads so far
2011-05-20 04:37:11,116 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:122990035-143010035
2011-05-20 04:37:12,643 - INFO - Processed 108200000 reads so far
2011-05-20 04:37:21,115 - INFO - Processed 108300000 reads so far
2011-05-20 04:37:31,040 - INFO - Processed 108400000 reads so far
2011-05-20 04:37:40,786 - INFO - Processed 108500000 reads so far
2011-05-20 04:37:51,235 - INFO - Processed 108600000 reads so far
2011-05-20 04:37:59,547 - INFO - Processed 108700000 reads so far
2011-05-20 04:38:08,213 - INFO - Processed 108800000 reads so far
2011-05-20 04:38:19,166 - INFO - Processed 108900000 reads so far
2011-05-20 04:38:31,807 - INFO - Processed 109000000 reads so far
2011-05-20 04:38:43,454 - INFO - Processed 109100000 reads so far
2011-05-20 04:38:54,317 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:142990070-163010070
2011-05-20 04:38:55,129 - INFO - Processed 109200000 reads so far
2011-05-20 04:39:06,483 - INFO - Processed 109300000 reads so far
2011-05-20 04:39:18,745 - INFO - Processed 109400000 reads so far
2011-05-20 04:39:29,595 - INFO - Processed 109500000 reads so far
2011-05-20 04:39:32,476 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:2990098-23010098
2011-05-20 04:39:41,046 - INFO - Processed 109600000 reads so far
2011-05-20 04:39:51,972 - INFO - Processed 109700000 reads so far
2011-05-20 04:40:04,578 - INFO - Processed 109800000 reads so far
2011-05-20 04:40:16,092 - INFO - Processed 109900000 reads so far
2011-05-20 04:40:27,397 - INFO - Processed 110000000 reads so far
2011-05-20 04:40:39,522 - INFO - Processed 110100000 reads so far
2011-05-20 04:40:51,795 - INFO - Processed 110200000 reads so far
2011-05-20 04:41:03,547 - INFO - Processed 110300000 reads so far
2011-05-20 04:41:15,316 - INFO - Processed 110400000 reads so far
2011-05-20 04:41:15,788 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:22990103-43010103
2011-05-20 04:41:27,020 - INFO - Processed 110500000 reads so far
2011-05-20 04:41:37,498 - INFO - Processed 110600000 reads so far
2011-05-20 04:41:51,268 - INFO - Processed 110700000 reads so far
2011-05-20 04:42:02,976 - INFO - Processed 110800000 reads so far
2011-05-20 04:42:14,491 - INFO - Processed 110900000 reads so far
2011-05-20 04:42:26,916 - INFO - Processed 111000000 reads so far
2011-05-20 04:42:38,355 - INFO - Processed 111100000 reads so far
2011-05-20 04:42:50,813 - INFO - Processed 111200000 reads so far
2011-05-20 04:42:52,696 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:46351849-66371849
2011-05-20 04:43:02,129 - INFO - Processed 111300000 reads so far
2011-05-20 04:43:12,753 - INFO - Processed 111400000 reads so far
2011-05-20 04:43:24,268 - INFO - Processed 111500000 reads so far
2011-05-20 04:43:36,629 - INFO - Processed 111600000 reads so far
2011-05-20 04:43:49,150 - INFO - Processed 111700000 reads so far
2011-05-20 04:44:00,175 - INFO - Processed 111800000 reads so far
2011-05-20 04:44:13,015 - INFO - Processed 111900000 reads so far
2011-05-20 04:44:24,579 - INFO - Processed 112000000 reads so far
2011-05-20 04:44:35,982 - INFO - Processed 112100000 reads so far
2011-05-20 04:44:47,343 - INFO - Processed 112200000 reads so far
2011-05-20 04:44:48,464 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:66351894-86371894
2011-05-20 04:44:58,128 - INFO - Processed 112300000 reads so far
2011-05-20 04:45:06,561 - INFO - Processed 112400000 reads so far
2011-05-20 04:45:16,311 - INFO - Processed 112500000 reads so far
2011-05-20 04:45:25,787 - INFO - Processed 112600000 reads so far
2011-05-20 04:45:34,371 - INFO - Processed 112700000 reads so far
2011-05-20 04:45:44,753 - INFO - Processed 112800000 reads so far
2011-05-20 04:45:55,419 - INFO - Processed 112900000 reads so far
2011-05-20 04:46:04,300 - INFO - Processed 113000000 reads so far
2011-05-20 04:46:13,933 - INFO - Processed 113100000 reads so far
2011-05-20 04:46:27,704 - INFO - Processed 113200000 reads so far
2011-05-20 04:46:32,431 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:86351922-106371922
2011-05-20 04:46:40,243 - INFO - Processed 113300000 reads so far
2011-05-20 04:46:49,544 - INFO - Processed 113400000 reads so far
2011-05-20 04:46:58,693 - INFO - Processed 113500000 reads so far
2011-05-20 04:47:09,276 - INFO - Processed 113600000 reads so far
2011-05-20 04:47:20,533 - INFO - Processed 113700000 reads so far
2011-05-20 04:47:30,353 - INFO - Processed 113800000 reads so far
2011-05-20 04:47:42,875 - INFO - Processed 113900000 reads so far
2011-05-20 04:47:54,292 - INFO - Processed 114000000 reads so far
2011-05-20 04:48:04,968 - INFO - Processed 114100000 reads so far
2011-05-20 04:48:14,494 - INFO - Processed 114200000 reads so far
2011-05-20 04:48:15,033 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:106351995-126371995
2011-05-20 04:48:25,179 - INFO - Processed 114300000 reads so far
2011-05-20 04:48:36,598 - INFO - Processed 114400000 reads so far
2011-05-20 04:48:47,994 - INFO - Processed 114500000 reads so far
2011-05-20 04:48:57,473 - INFO - Processed 114600000 reads so far
2011-05-20 04:49:06,285 - INFO - Processed 114700000 reads so far
2011-05-20 04:49:16,809 - INFO - Processed 114800000 reads so far
2011-05-20 04:49:26,476 - INFO - Processed 114900000 reads so far
2011-05-20 04:49:35,902 - INFO - Processed 115000000 reads so far
2011-05-20 04:49:45,257 - INFO - Processed 115100000 reads so far
2011-05-20 04:49:56,296 - INFO - Processed 115200000 reads so far
2011-05-20 04:49:58,329 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:126352006-146372006
2011-05-20 04:50:07,909 - INFO - Processed 115300000 reads so far
2011-05-20 04:50:16,895 - INFO - Processed 115400000 reads so far
2011-05-20 04:50:27,382 - INFO - Processed 115500000 reads so far
2011-05-20 04:50:36,030 - INFO - Processed 115600000 reads so far
2011-05-20 04:50:47,666 - INFO - Processed 115700000 reads so far
2011-05-20 04:50:56,985 - INFO - Processed 115800000 reads so far
2011-05-20 04:51:07,084 - INFO - Processed 115900000 reads so far
2011-05-20 04:51:19,649 - INFO - Processed 116000000 reads so far
2011-05-20 04:51:28,724 - INFO - Processed 116100000 reads so far
2011-05-20 04:51:37,890 - INFO - Processed 116200000 reads so far
2011-05-20 04:51:48,565 - INFO - Processed 116300000 reads so far
2011-05-20 04:51:48,969 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:146352016-166372016
2011-05-20 04:51:58,333 - INFO - Processed 116400000 reads so far
2011-05-20 04:52:10,710 - INFO - Processed 116500000 reads so far
2011-05-20 04:52:22,098 - INFO - Processed 116600000 reads so far
2011-05-20 04:52:31,835 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7_random:0-20010112
2011-05-20 04:52:33,060 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:2990009-23010009
2011-05-20 04:52:35,062 - INFO - Processed 116700000 reads so far
2011-05-20 04:52:47,082 - INFO - Processed 116800000 reads so far
2011-05-20 04:52:59,597 - INFO - Processed 116900000 reads so far
2011-05-20 04:53:11,491 - INFO - Processed 117000000 reads so far
2011-05-20 04:53:22,639 - INFO - Processed 117100000 reads so far
2011-05-20 04:53:34,853 - INFO - Processed 117200000 reads so far
2011-05-20 04:53:46,339 - INFO - Processed 117300000 reads so far
2011-05-20 04:53:57,766 - INFO - Processed 117400000 reads so far
2011-05-20 04:54:09,101 - INFO - Processed 117500000 reads so far
2011-05-20 04:54:20,576 - INFO - Processed 117600000 reads so far
2011-05-20 04:54:30,254 - INFO - Processed 117700000 reads so far
2011-05-20 04:54:38,394 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:22990016-43010016
2011-05-20 04:54:41,272 - INFO - Processed 117800000 reads so far
2011-05-20 04:54:53,355 - INFO - Processed 117900000 reads so far
2011-05-20 04:55:04,964 - INFO - Processed 118000000 reads so far
2011-05-20 04:55:16,451 - INFO - Processed 118100000 reads so far
2011-05-20 04:55:25,732 - INFO - Processed 118200000 reads so far
2011-05-20 04:55:35,573 - INFO - Processed 118300000 reads so far
2011-05-20 04:55:47,124 - INFO - Processed 118400000 reads so far
2011-05-20 04:55:57,718 - INFO - Processed 118500000 reads so far
2011-05-20 04:56:08,205 - INFO - Processed 118600000 reads so far
2011-05-20 04:56:18,174 - INFO - Processed 118700000 reads so far
2011-05-20 04:56:21,228 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:42990023-63010023
2011-05-20 04:56:29,889 - INFO - Processed 118800000 reads so far
2011-05-20 04:56:41,423 - INFO - Processed 118900000 reads so far
2011-05-20 04:56:50,462 - INFO - Processed 119000000 reads so far
2011-05-20 04:56:59,831 - INFO - Processed 119100000 reads so far
2011-05-20 04:57:11,664 - INFO - Processed 119200000 reads so far
2011-05-20 04:57:20,941 - INFO - Processed 119300000 reads so far
2011-05-20 04:57:29,468 - INFO - Processed 119400000 reads so far
2011-05-20 04:57:38,283 - INFO - Processed 119500000 reads so far
2011-05-20 04:57:43,384 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:62990030-83010030
2011-05-20 04:57:47,755 - INFO - Processed 119600000 reads so far
2011-05-20 04:57:56,417 - INFO - Processed 119700000 reads so far
2011-05-20 04:58:07,128 - INFO - Processed 119800000 reads so far
2011-05-20 04:58:20,780 - INFO - Processed 119900000 reads so far
2011-05-20 04:58:31,174 - INFO - Processed 120000000 reads so far
2011-05-20 04:58:42,128 - INFO - Processed 120100000 reads so far
2011-05-20 04:58:53,503 - INFO - Processed 120200000 reads so far
2011-05-20 04:59:01,763 - INFO - Processed 120300000 reads so far
2011-05-20 04:59:11,919 - INFO - Processed 120400000 reads so far
2011-05-20 04:59:21,062 - INFO - Processed 120500000 reads so far
2011-05-20 04:59:24,301 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:82990093-103010093
2011-05-20 04:59:28,387 - INFO - Processed 120600000 reads so far
2011-05-20 04:59:38,575 - INFO - Processed 120700000 reads so far
2011-05-20 04:59:48,825 - INFO - Processed 120800000 reads so far
2011-05-20 04:59:59,222 - INFO - Processed 120900000 reads so far
2011-05-20 05:00:09,873 - INFO - Processed 121000000 reads so far
2011-05-20 05:00:19,728 - INFO - Processed 121100000 reads so far
2011-05-20 05:00:30,560 - INFO - Processed 121200000 reads so far
2011-05-20 05:00:39,984 - INFO - Processed 121300000 reads so far
2011-05-20 05:00:49,849 - INFO - Processed 121400000 reads so far
2011-05-20 05:00:58,205 - INFO - Processed 121500000 reads so far
2011-05-20 05:01:02,481 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:102990111-123010111
2011-05-20 05:01:08,713 - INFO - Processed 121600000 reads so far
2011-05-20 05:01:17,625 - INFO - Processed 121700000 reads so far
2011-05-20 05:01:26,412 - INFO - Processed 121800000 reads so far
2011-05-20 05:01:39,511 - INFO - Processed 121900000 reads so far
2011-05-20 05:01:49,897 - INFO - Processed 122000000 reads so far
2011-05-20 05:01:59,201 - INFO - Processed 122100000 reads so far
2011-05-20 05:02:09,945 - INFO - Processed 122200000 reads so far
2011-05-20 05:02:21,316 - INFO - Processed 122300000 reads so far
2011-05-20 05:02:31,776 - INFO - Processed 122400000 reads so far
2011-05-20 05:02:40,120 - INFO - Processed 122500000 reads so far
2011-05-20 05:02:47,600 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:122990137-143010137
2011-05-20 05:02:50,527 - INFO - Processed 122600000 reads so far
2011-05-20 05:02:58,198 - INFO - Processed 122700000 reads so far
2011-05-20 05:03:07,464 - INFO - Processed 122800000 reads so far
2011-05-20 05:03:16,217 - INFO - Processed 122900000 reads so far
2011-05-20 05:03:25,581 - INFO - Processed 123000000 reads so far
2011-05-20 05:03:34,302 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8_random:0-20010033
2011-05-20 05:03:35,948 - INFO - Processed 123100000 reads so far
2011-05-20 05:03:44,498 - INFO - Processed 123200000 reads so far
2011-05-20 05:03:45,574 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:2989946-23009946
2011-05-20 05:03:52,180 - INFO - Processed 123300000 reads so far
2011-05-20 05:03:59,919 - INFO - Processed 123400000 reads so far
2011-05-20 05:04:08,339 - INFO - Processed 123500000 reads so far
2011-05-20 05:04:16,241 - INFO - Processed 123600000 reads so far
2011-05-20 05:04:23,219 - INFO - Processed 123700000 reads so far
2011-05-20 05:04:31,462 - INFO - Processed 123800000 reads so far
2011-05-20 05:04:39,443 - INFO - Processed 123900000 reads so far
2011-05-20 05:04:49,322 - INFO - Processed 124000000 reads so far
2011-05-20 05:04:58,062 - INFO - Processed 124100000 reads so far
2011-05-20 05:05:07,399 - INFO - Processed 124200000 reads so far
2011-05-20 05:05:13,088 - INFO - Processed 124300000 reads so far
2011-05-20 05:05:20,261 - INFO - Processed 124400000 reads so far
2011-05-20 05:05:28,170 - INFO - Processed 124500000 reads so far
2011-05-20 05:05:34,478 - INFO - Processed 124600000 reads so far
2011-05-20 05:05:40,107 - INFO - Processed 124700000 reads so far
2011-05-20 05:05:47,108 - INFO - Processed 124800000 reads so far
2011-05-20 05:05:56,245 - INFO - Processed 124900000 reads so far
2011-05-20 05:06:03,838 - INFO - Processed 125000000 reads so far
2011-05-20 05:06:13,917 - INFO - Processed 125100000 reads so far
2011-05-20 05:06:21,798 - INFO - Processed 125200000 reads so far
2011-05-20 05:06:29,453 - INFO - Processed 125300000 reads so far
2011-05-20 05:06:38,600 - INFO - Processed 125400000 reads so far
2011-05-20 05:06:47,584 - INFO - Processed 125500000 reads so far
2011-05-20 05:06:57,352 - INFO - Processed 125600000 reads so far
2011-05-20 05:07:03,850 - INFO - Processed 125700000 reads so far
2011-05-20 05:07:09,403 - INFO - Processed 125800000 reads so far
2011-05-20 05:07:16,340 - INFO - Processed 125900000 reads so far
2011-05-20 05:07:23,857 - INFO - Processed 126000000 reads so far
2011-05-20 05:07:32,377 - INFO - Processed 126100000 reads so far
2011-05-20 05:07:41,622 - INFO - Processed 126200000 reads so far
2011-05-20 05:07:49,896 - INFO - Processed 126300000 reads so far
2011-05-20 05:07:57,597 - INFO - Processed 126400000 reads so far
2011-05-20 05:08:05,275 - INFO - Processed 126500000 reads so far
2011-05-20 05:08:10,995 - INFO - Processed 126600000 reads so far
2011-05-20 05:08:17,939 - INFO - Processed 126700000 reads so far
2011-05-20 05:08:24,917 - INFO - Processed 126800000 reads so far
2011-05-20 05:08:34,325 - INFO - Processed 126900000 reads so far
2011-05-20 05:08:44,545 - INFO - Processed 127000000 reads so far
2011-05-20 05:08:53,928 - INFO - Processed 127100000 reads so far
2011-05-20 05:09:01,024 - INFO - Processed 127200000 reads so far
2011-05-20 05:09:07,333 - INFO - Processed 127300000 reads so far
2011-05-20 05:09:12,882 - INFO - Processed 127400000 reads so far
2011-05-20 05:09:22,195 - INFO - Processed 127500000 reads so far
2011-05-20 05:09:30,378 - INFO - Processed 127600000 reads so far
2011-05-20 05:09:37,837 - INFO - Processed 127700000 reads so far
2011-05-20 05:09:44,442 - INFO - Processed 127800000 reads so far
2011-05-20 05:09:51,982 - INFO - Processed 127900000 reads so far
2011-05-20 05:10:04,932 - INFO - Processed 128000000 reads so far
2011-05-20 05:10:14,392 - INFO - Processed 128100000 reads so far
2011-05-20 05:10:24,877 - INFO - Processed 128200000 reads so far
2011-05-20 05:10:36,282 - INFO - Processed 128300000 reads so far
2011-05-20 05:10:52,848 - INFO - Processed 128400000 reads so far
2011-05-20 05:11:01,096 - INFO - Processed 128500000 reads so far
2011-05-20 05:11:10,427 - INFO - Processed 128600000 reads so far
2011-05-20 05:11:17,502 - INFO - Processed 128700000 reads so far
2011-05-20 05:11:27,641 - INFO - Processed 128800000 reads so far
2011-05-20 05:11:36,593 - INFO - Processed 128900000 reads so far
2011-05-20 05:11:43,676 - INFO - Processed 129000000 reads so far
2011-05-20 05:11:51,540 - INFO - Processed 129100000 reads so far
2011-05-20 05:11:59,963 - INFO - Processed 129200000 reads so far
2011-05-20 05:12:07,268 - INFO - Processed 129300000 reads so far
2011-05-20 05:12:16,083 - INFO - Processed 129400000 reads so far
2011-05-20 05:12:23,244 - INFO - Processed 129500000 reads so far
2011-05-20 05:12:30,318 - INFO - Processed 129600000 reads so far
2011-05-20 05:12:37,143 - INFO - Processed 129700000 reads so far
2011-05-20 05:12:43,173 - INFO - Processed 129800000 reads so far
2011-05-20 05:12:49,559 - INFO - Processed 129900000 reads so far
2011-05-20 05:12:56,259 - INFO - Processed 130000000 reads so far
2011-05-20 05:13:03,537 - INFO - Processed 130100000 reads so far
2011-05-20 05:13:12,075 - INFO - Processed 130200000 reads so far
2011-05-20 05:13:20,605 - INFO - Processed 130300000 reads so far
2011-05-20 05:13:29,656 - INFO - Processed 130400000 reads so far
2011-05-20 05:13:37,804 - INFO - Processed 130500000 reads so far
2011-05-20 05:13:46,236 - INFO - Processed 130600000 reads so far
2011-05-20 05:13:56,298 - INFO - Processed 130700000 reads so far
2011-05-20 05:14:05,030 - INFO - Processed 130800000 reads so far
2011-05-20 05:14:13,880 - INFO - Processed 130900000 reads so far
2011-05-20 05:14:23,067 - INFO - Processed 131000000 reads so far
2011-05-20 05:14:28,227 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:22989966-43009966
2011-05-20 05:14:31,551 - INFO - Processed 131100000 reads so far
2011-05-20 05:14:39,562 - INFO - Processed 131200000 reads so far
2011-05-20 05:14:47,044 - INFO - Processed 131300000 reads so far
2011-05-20 05:14:55,808 - INFO - Processed 131400000 reads so far
2011-05-20 05:15:04,867 - INFO - Processed 131500000 reads so far
2011-05-20 05:15:13,793 - INFO - Processed 131600000 reads so far
2011-05-20 05:15:21,881 - INFO - Processed 131700000 reads so far
2011-05-20 05:15:28,559 - INFO - Processed 131800000 reads so far
2011-05-20 05:15:38,375 - INFO - Processed 131900000 reads so far
2011-05-20 05:15:47,225 - INFO - Processed 132000000 reads so far
2011-05-20 05:15:55,784 - INFO - Processed 132100000 reads so far
2011-05-20 05:16:02,766 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:42989976-63009976
2011-05-20 05:16:04,743 - INFO - Processed 132200000 reads so far
2011-05-20 05:16:14,311 - INFO - Processed 132300000 reads so far
2011-05-20 05:16:25,033 - INFO - Processed 132400000 reads so far
2011-05-20 05:16:34,650 - INFO - Processed 132500000 reads so far
2011-05-20 05:16:44,685 - INFO - Processed 132600000 reads so far
2011-05-20 05:16:53,572 - INFO - Processed 132700000 reads so far
2011-05-20 05:17:03,895 - INFO - Processed 132800000 reads so far
2011-05-20 05:17:12,586 - INFO - Processed 132900000 reads so far
2011-05-20 05:17:21,049 - INFO - Processed 133000000 reads so far
2011-05-20 05:17:29,575 - INFO - Processed 133100000 reads so far
2011-05-20 05:17:38,735 - INFO - Processed 133200000 reads so far
2011-05-20 05:17:42,039 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:62990024-83010024
2011-05-20 05:17:46,826 - INFO - Processed 133300000 reads so far
2011-05-20 05:17:55,551 - INFO - Processed 133400000 reads so far
2011-05-20 05:18:04,937 - INFO - Processed 133500000 reads so far
2011-05-20 05:18:14,282 - INFO - Processed 133600000 reads so far
2011-05-20 05:18:22,423 - INFO - Processed 133700000 reads so far
2011-05-20 05:18:30,790 - INFO - Processed 133800000 reads so far
2011-05-20 05:18:38,889 - INFO - Processed 133900000 reads so far
2011-05-20 05:18:47,017 - INFO - Processed 134000000 reads so far
2011-05-20 05:18:57,020 - INFO - Processed 134100000 reads so far
2011-05-20 05:19:07,146 - INFO - Processed 134200000 reads so far
2011-05-20 05:19:08,439 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:82990025-103010025
2011-05-20 05:19:16,652 - INFO - Processed 134300000 reads so far
2011-05-20 05:19:24,506 - INFO - Processed 134400000 reads so far
2011-05-20 05:19:33,244 - INFO - Processed 134500000 reads so far
2011-05-20 05:19:41,991 - INFO - Processed 134600000 reads so far
2011-05-20 05:19:52,082 - INFO - Processed 134700000 reads so far
2011-05-20 05:20:02,144 - INFO - Processed 134800000 reads so far
2011-05-20 05:20:10,879 - INFO - Processed 134900000 reads so far
2011-05-20 05:20:20,848 - INFO - Processed 135000000 reads so far
2011-05-20 05:20:29,864 - INFO - Processed 135100000 reads so far
2011-05-20 05:20:38,754 - INFO - Processed 135200000 reads so far
2011-05-20 05:20:39,014 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:102990033-123010033
2011-05-20 05:20:49,313 - INFO - Processed 135300000 reads so far
2011-05-20 05:20:58,695 - INFO - Processed 135400000 reads so far
2011-05-20 05:21:07,031 - INFO - Processed 135500000 reads so far
2011-05-20 05:21:15,972 - INFO - Processed 135600000 reads so far
2011-05-20 05:21:25,668 - INFO - Processed 135700000 reads so far
2011-05-20 05:21:34,809 - INFO - Processed 135800000 reads so far
2011-05-20 05:21:42,942 - INFO - Processed 135900000 reads so far
2011-05-20 05:21:53,791 - INFO - Processed 136000000 reads so far
2011-05-20 05:22:03,107 - INFO - Processed 136100000 reads so far
2011-05-20 05:22:12,716 - INFO - Processed 136200000 reads so far
2011-05-20 05:22:19,962 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:122990053-143010053
2011-05-20 05:22:21,877 - INFO - Processed 136300000 reads so far
2011-05-20 05:22:24,943 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9_random:0-20010007
2011-05-20 05:22:28,345 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrM:0-20010000
2011-05-20 05:22:30,891 - INFO - Processed 136400000 reads so far
2011-05-20 05:22:34,556 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrUn_random:0-20010000
2011-05-20 05:22:38,878 - INFO - Processed 136500000 reads so far
2011-05-20 05:22:47,267 - INFO - Processed 136600000 reads so far
2011-05-20 05:22:55,009 - INFO - Processed 136700000 reads so far
2011-05-20 05:23:02,945 - INFO - Processed 136800000 reads so far
2011-05-20 05:23:10,409 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:2990002-23010002
2011-05-20 05:23:13,779 - INFO - Processed 136900000 reads so far
2011-05-20 05:23:24,361 - INFO - Processed 137000000 reads so far
2011-05-20 05:23:33,292 - INFO - Processed 137100000 reads so far
2011-05-20 05:23:46,246 - INFO - Processed 137200000 reads so far
2011-05-20 05:23:57,573 - INFO - Processed 137300000 reads so far
2011-05-20 05:24:08,775 - INFO - Processed 137400000 reads so far
2011-05-20 05:24:14,121 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:22990006-43010006
2011-05-20 05:24:20,239 - INFO - Processed 137500000 reads so far
2011-05-20 05:24:29,238 - INFO - Processed 137600000 reads so far
2011-05-20 05:24:37,448 - INFO - Processed 137700000 reads so far
2011-05-20 05:24:46,212 - INFO - Processed 137800000 reads so far
2011-05-20 05:24:54,761 - INFO - Processed 137900000 reads so far
2011-05-20 05:25:03,579 - INFO - Processed 138000000 reads so far
2011-05-20 05:25:06,165 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:42990027-63010027
2011-05-20 05:25:12,990 - INFO - Processed 138100000 reads so far
2011-05-20 05:25:22,918 - INFO - Processed 138200000 reads so far
2011-05-20 05:25:34,206 - INFO - Processed 138300000 reads so far
2011-05-20 05:25:45,499 - INFO - Processed 138400000 reads so far
2011-05-20 05:25:54,866 - INFO - Processed 138500000 reads so far
2011-05-20 05:25:56,124 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:62990032-83010032
2011-05-20 05:26:05,774 - INFO - Processed 138600000 reads so far
2011-05-20 05:26:15,960 - INFO - Processed 138700000 reads so far
2011-05-20 05:26:24,922 - INFO - Processed 138800000 reads so far
2011-05-20 05:26:33,745 - INFO - Processed 138900000 reads so far
2011-05-20 05:26:42,516 - INFO - Processed 139000000 reads so far
2011-05-20 05:26:43,467 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:82990092-103010092
2011-05-20 05:26:51,709 - INFO - Processed 139100000 reads so far
2011-05-20 05:27:00,226 - INFO - Processed 139200000 reads so far
2011-05-20 05:27:10,422 - INFO - Processed 139300000 reads so far
2011-05-20 05:27:19,208 - INFO - Processed 139400000 reads so far
2011-05-20 05:27:28,026 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:102990162-123010162
2011-05-20 05:27:28,242 - INFO - Processed 139500000 reads so far
2011-05-20 05:27:37,312 - INFO - Processed 139600000 reads so far
2011-05-20 05:27:48,282 - INFO - Processed 139700000 reads so far
2011-05-20 05:27:56,673 - INFO - Processed 139800000 reads so far
2011-05-20 05:28:07,428 - INFO - Processed 139900000 reads so far
2011-05-20 05:28:14,899 - INFO - Processed 140000000 reads so far
2011-05-20 05:28:19,846 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:122990165-143010165
2011-05-20 05:28:24,191 - INFO - Processed 140100000 reads so far
2011-05-20 05:28:32,972 - INFO - Processed 140200000 reads so far
2011-05-20 05:28:41,413 - INFO - Processed 140300000 reads so far
2011-05-20 05:28:52,211 - INFO - Processed 140400000 reads so far
2011-05-20 05:29:01,260 - INFO - Processed 140500000 reads so far
2011-05-20 05:29:09,231 - INFO - Processed 140600000 reads so far
2011-05-20 05:29:09,475 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:142990260-163010260
2011-05-20 05:29:20,720 - INFO - Processed 140700000 reads so far
2011-05-20 05:29:30,390 - INFO - Processed 140800000 reads so far
2011-05-20 05:29:39,112 - INFO - Processed 140900000 reads so far
2011-05-20 05:29:49,641 - INFO - Processed 141000000 reads so far
2011-05-20 05:29:57,728 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:162990369-183010369
2011-05-20 05:30:00,033 - INFO - Processed 141100000 reads so far
2011-05-20 05:30:09,634 - INFO - Processed 141200000 reads so far
2011-05-20 05:30:14,552 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX_random:0-20010003
2011-05-20 05:30:16,838 - INFO - Processed 141300000 reads so far
2011-05-20 05:30:17,795 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY:0-20010000
2011-05-20 05:30:26,457 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:0-20010338
2011-05-20 05:30:27,636 - INFO - Processed 141400000 reads so far
2011-05-20 05:30:37,282 - INFO - Processed 141500000 reads so far
2011-05-20 05:30:46,410 - INFO - Processed 141600000 reads so far
2011-05-20 05:30:54,990 - INFO - Processed 141700000 reads so far
2011-05-20 05:31:03,683 - INFO - Processed 141800000 reads so far
2011-05-20 05:31:11,405 - INFO - Processed 141900000 reads so far
2011-05-20 05:31:18,762 - INFO - Processed 142000000 reads so far
2011-05-20 05:31:25,759 - INFO - Processed 142100000 reads so far
2011-05-20 05:31:26,887 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:19990571-40010571
2011-05-20 05:31:34,901 - INFO - Processed 142200000 reads so far
2011-05-20 05:31:44,537 - INFO - Processed 142300000 reads so far
2011-05-20 05:31:56,099 - INFO - Processed 142400000 reads so far
2011-05-20 05:32:06,313 - INFO - Processed 142500000 reads so far
2011-05-20 05:32:08,301 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:39990573-60010573
2011-05-20 05:32:17,253 - INFO - Processed 142600000 reads so far
2011-05-20 05:32:27,704 - INFO - Processed 142700000 reads so far
2011-05-20 05:32:38,463 - INFO - Processed 142800000 reads so far
2011-05-20 05:32:46,365 - INFO - Processed 142900000 reads so far
2011-05-20 05:32:55,206 - INFO - Processed 143000000 reads so far
2011-05-20 05:33:04,792 - INFO - Processed 143100000 reads so far
2011-05-20 05:33:08,056 - INFO - Processed 143200000 reads so far
2011-05-20 05:33:11,440 - INFO - Processed 143300000 reads so far
2011-05-20 05:33:14,801 - INFO - Processed 143400000 reads so far
2011-05-20 05:33:17,994 - INFO - Processed 143500000 reads so far
2011-05-20 05:33:21,526 - INFO - Processed 143600000 reads so far
2011-05-20 05:33:24,546 - INFO - Processed 143700000 reads so far
2011-05-20 05:33:28,501 - INFO - Processed 143800000 reads so far
2011-05-20 05:33:31,937 - INFO - Processed 143900000 reads so far
2011-05-20 05:33:35,273 - INFO - Processed 144000000 reads so far
2011-05-20 05:33:38,251 - INFO - Processed 144100000 reads so far
2011-05-20 05:33:41,571 - INFO - Processed 144200000 reads so far
2011-05-20 05:33:45,941 - INFO - Processed 144300000 reads so far
2011-05-20 05:33:49,220 - INFO - Processed 144400000 reads so far
2011-05-20 05:33:52,892 - INFO - Processed 144500000 reads so far
2011-05-20 05:33:55,878 - INFO - Processed 144600000 reads so far
2011-05-20 05:33:58,973 - INFO - Processed 144700000 reads so far
2011-05-20 05:34:02,235 - INFO - Processed 144800000 reads so far
2011-05-20 05:34:05,131 - INFO - Processed 144900000 reads so far
2011-05-20 05:34:08,279 - INFO - Processed 145000000 reads so far
2011-05-20 05:34:10,529 - INFO - Finished loading data. Outputting QC metrics
2011-05-20 05:34:30,800 - INFO - Finished outputting QC metrics
2011-05-20 05:34:30,923 - INFO - Finished generating QC metrics