2011-05-20 09:56:46,924 - INFO - Generating QC metrics for BAM File ['WTCHG_11732.bam']
2011-05-20 09:56:46,924 - INFO - Output will go to WTCHG_11732.qc.txt.tmp
2011-05-20 09:56:46,924 - INFO - Reading GC Map from file /data/Genomes/gcMap/Mouse37.gcMap.gz
2011-05-20 09:59:49,497 - INFO - Finished reading GC Map
2011-05-20 09:59:49,497 - INFO - Reading CDS from exon definition file /data/Genomes/annotation/Mouse37.refGene.txt.gz
2011-05-20 09:59:52,206 - INFO - Read 382138 exons (33804740 nucleotides) for 32 chromosomes
2011-05-20 09:59:52,207 - INFO - Computing coverage cut-off
2011-05-20 09:59:52,207 - INFO - Retrieving BAM file coverage info from samtools pileup
2011-05-20 09:59:56,652 - INFO - Processed 1000000 pile-up sites
2011-05-20 10:00:00,544 - INFO - Processed 2000000 pile-up sites
2011-05-20 10:00:02,921 - INFO - Processed 3000000 pile-up sites
2011-05-20 10:00:05,304 - INFO - Processed 4000000 pile-up sites
2011-05-20 10:00:10,075 - INFO - Processed 5000000 pile-up sites
2011-05-20 10:00:15,009 - INFO - Processed 6000000 pile-up sites
2011-05-20 10:00:19,790 - INFO - Processed 7000000 pile-up sites
2011-05-20 10:00:22,721 - INFO - Processed 8000000 pile-up sites
2011-05-20 10:00:25,102 - INFO - Processed 9000000 pile-up sites
2011-05-20 10:00:27,491 - INFO - Processed 10000000 pile-up sites
2011-05-20 10:00:29,879 - INFO - Processed 11000000 pile-up sites
2011-05-20 10:00:32,238 - INFO - Processed 12000000 pile-up sites
2011-05-20 10:00:36,335 - INFO - Processed 13000000 pile-up sites
2011-05-20 10:00:43,156 - INFO - Processed 14000000 pile-up sites
2011-05-20 10:00:47,746 - INFO - Processed 15000000 pile-up sites
2011-05-20 10:00:51,690 - INFO - Processed 16000000 pile-up sites
2011-05-20 10:00:57,397 - INFO - Processed 17000000 pile-up sites
2011-05-20 10:01:02,156 - INFO - Processed 18000000 pile-up sites
2011-05-20 10:01:06,539 - INFO - Processed 19000000 pile-up sites
2011-05-20 10:01:10,744 - INFO - Processed 20000000 pile-up sites
2011-05-20 10:01:16,037 - INFO - Processed 21000000 pile-up sites
2011-05-20 10:01:20,254 - INFO - Processed 22000000 pile-up sites
2011-05-20 10:01:24,425 - INFO - Processed 23000000 pile-up sites
2011-05-20 10:01:28,596 - INFO - Processed 24000000 pile-up sites
2011-05-20 10:01:32,469 - INFO - Processed 25000000 pile-up sites
2011-05-20 10:01:38,018 - INFO - Processed 26000000 pile-up sites
2011-05-20 10:01:40,428 - INFO - Processed 27000000 pile-up sites
2011-05-20 10:01:43,891 - INFO - Processed 28000000 pile-up sites
2011-05-20 10:01:47,934 - INFO - Processed 29000000 pile-up sites
2011-05-20 10:01:52,297 - INFO - Processed 30000000 pile-up sites
2011-05-20 10:01:54,403 - INFO - Finished processing pile-up on 30884885 sites (200000001 nucleotides)
2011-05-20 10:01:54,403 - INFO - Coverage cut-off value is 56
2011-05-20 10:01:54,403 - INFO - Loading data into QC data manager
2011-05-20 10:01:54,575 - WARNING - Found RG tag 'SM' (value: 44) duplicated in CO field (value: 4618/10) -- ignoring CO value
2011-05-20 10:01:54,575 - WARNING - Found RG tag 'ID' (value: WTCHG_11732) duplicated in CO field (value: 4618/10) -- ignoring CO value
2011-05-20 10:01:54,575 - WARNING - Found RG tag 'SM' (value: 44) duplicated in CO field (value: 4618/10) -- ignoring CO value
2011-05-20 10:01:54,575 - WARNING - Found RG tag 'ID' (value: WTCHG_11732) duplicated in CO field (value: 4618/10) -- ignoring CO value
2011-05-20 10:01:54,575 - WARNING - Found RG tag 'SM' (value: 44) duplicated in CO field (value: 4618/10) -- ignoring CO value
2011-05-20 10:01:54,575 - WARNING - Found RG tag 'ID' (value: WTCHG_11732) duplicated in CO field (value: 4618/10) -- ignoring CO value
2011-05-20 10:01:54,576 - WARNING - Found RG tag 'SM' (value: 44) duplicated in CO field (value: 4618/10) -- ignoring CO value
2011-05-20 10:01:54,576 - WARNING - Found RG tag 'ID' (value: WTCHG_11732) duplicated in CO field (value: 4618/10) -- ignoring CO value
2011-05-20 10:01:54,631 - WARNING - Found RG tag 'SM' (value: 44) duplicated in CO field (value: 4618/10) -- ignoring CO value
2011-05-20 10:01:54,631 - WARNING - Found RG tag 'ID' (value: WTCHG_11732) duplicated in CO field (value: 4618/10) -- ignoring CO value
2011-05-20 10:01:54,631 - WARNING - Found RG tag 'SM' (value: 44) duplicated in CO field (value: 4618/10) -- ignoring CO value
2011-05-20 10:01:54,631 - WARNING - Found RG tag 'ID' (value: WTCHG_11732) duplicated in CO field (value: 4618/10) -- ignoring CO value
2011-05-20 10:01:54,631 - WARNING - Found RG tag 'SM' (value: 44) duplicated in CO field (value: 4618/10) -- ignoring CO value
2011-05-20 10:01:54,631 - WARNING - Found RG tag 'ID' (value: WTCHG_11732) duplicated in CO field (value: 4618/10) -- ignoring CO value
2011-05-20 10:01:54,632 - WARNING - Found RG tag 'SM' (value: 44) duplicated in CO field (value: 4618/10) -- ignoring CO value
2011-05-20 10:01:54,632 - WARNING - Found RG tag 'ID' (value: WTCHG_11732) duplicated in CO field (value: 4618/10) -- ignoring CO value
2011-05-20 10:01:54,642 - INFO - Reading data from BAM file WTCHG_11732.bam. All reads in file will be read
2011-05-20 10:01:54,686 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:2990040-23010040
2011-05-20 10:02:05,421 - INFO - Processed 100000 reads so far
2011-05-20 10:02:16,027 - INFO - Processed 200000 reads so far
2011-05-20 10:02:26,792 - INFO - Processed 300000 reads so far
2011-05-20 10:02:36,764 - INFO - Processed 400000 reads so far
2011-05-20 10:02:47,662 - INFO - Processed 500000 reads so far
2011-05-20 10:02:58,518 - INFO - Processed 600000 reads so far
2011-05-20 10:03:07,753 - INFO - Processed 700000 reads so far
2011-05-20 10:03:19,139 - INFO - Processed 800000 reads so far
2011-05-20 10:03:29,964 - INFO - Processed 900000 reads so far
2011-05-20 10:03:40,869 - INFO - Processed 1000000 reads so far
2011-05-20 10:03:51,335 - INFO - Processed 1100000 reads so far
2011-05-20 10:04:01,150 - INFO - Processed 1200000 reads so far
2011-05-20 10:04:11,512 - INFO - Processed 1300000 reads so far
2011-05-20 10:04:12,000 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:22990047-43010047
2011-05-20 10:04:21,559 - INFO - Processed 1400000 reads so far
2011-05-20 10:04:31,535 - INFO - Processed 1500000 reads so far
2011-05-20 10:04:41,896 - INFO - Processed 1600000 reads so far
2011-05-20 10:04:52,718 - INFO - Processed 1700000 reads so far
2011-05-20 10:05:03,454 - INFO - Processed 1800000 reads so far
2011-05-20 10:05:14,488 - INFO - Processed 1900000 reads so far
2011-05-20 10:05:25,666 - INFO - Processed 2000000 reads so far
2011-05-20 10:05:37,258 - INFO - Processed 2100000 reads so far
2011-05-20 10:05:47,625 - INFO - Processed 2200000 reads so far
2011-05-20 10:05:57,311 - INFO - Processed 2300000 reads so far
2011-05-20 10:06:08,263 - INFO - Processed 2400000 reads so far
2011-05-20 10:06:18,160 - INFO - Processed 2500000 reads so far
2011-05-20 10:06:18,981 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:42990052-63010052
2011-05-20 10:06:26,204 - INFO - Processed 2600000 reads so far
2011-05-20 10:06:37,954 - INFO - Processed 2700000 reads so far
2011-05-20 10:06:48,981 - INFO - Processed 2800000 reads so far
2011-05-20 10:07:00,111 - INFO - Processed 2900000 reads so far
2011-05-20 10:07:11,349 - INFO - Processed 3000000 reads so far
2011-05-20 10:07:19,091 - INFO - Processed 3100000 reads so far
2011-05-20 10:07:28,105 - INFO - Processed 3200000 reads so far
2011-05-20 10:07:38,842 - INFO - Processed 3300000 reads so far
2011-05-20 10:07:49,881 - INFO - Processed 3400000 reads so far
2011-05-20 10:07:59,441 - INFO - Processed 3500000 reads so far
2011-05-20 10:08:09,979 - INFO - Processed 3600000 reads so far
2011-05-20 10:08:20,138 - INFO - Processed 3700000 reads so far
2011-05-20 10:08:20,648 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:62990075-83010075
2011-05-20 10:08:30,548 - INFO - Processed 3800000 reads so far
2011-05-20 10:08:41,676 - INFO - Processed 3900000 reads so far
2011-05-20 10:08:52,574 - INFO - Processed 4000000 reads so far
2011-05-20 10:09:03,602 - INFO - Processed 4100000 reads so far
2011-05-20 10:09:13,377 - INFO - Processed 4200000 reads so far
2011-05-20 10:09:28,396 - INFO - Processed 4300000 reads so far
2011-05-20 10:09:40,737 - INFO - Processed 4400000 reads so far
2011-05-20 10:09:53,328 - INFO - Processed 4500000 reads so far
2011-05-20 10:10:18,902 - INFO - Processed 4600000 reads so far
2011-05-20 10:10:29,711 - INFO - Processed 4700000 reads so far
2011-05-20 10:10:43,775 - INFO - Processed 4800000 reads so far
2011-05-20 10:11:11,100 - INFO - Processed 4900000 reads so far
2011-05-20 10:11:12,141 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:82990094-103010094
2011-05-20 10:11:22,554 - INFO - Processed 5000000 reads so far
2011-05-20 10:11:34,111 - INFO - Processed 5100000 reads so far
2011-05-20 10:11:46,820 - INFO - Processed 5200000 reads so far
2011-05-20 10:11:58,050 - INFO - Processed 5300000 reads so far
2011-05-20 10:12:09,159 - INFO - Processed 5400000 reads so far
2011-05-20 10:12:20,290 - INFO - Processed 5500000 reads so far
2011-05-20 10:12:31,718 - INFO - Processed 5600000 reads so far
2011-05-20 10:12:42,968 - INFO - Processed 5700000 reads so far
2011-05-20 10:12:54,283 - INFO - Processed 5800000 reads so far
2011-05-20 10:13:05,616 - INFO - Processed 5900000 reads so far
2011-05-20 10:13:20,238 - INFO - Processed 6000000 reads so far
2011-05-20 10:13:32,246 - INFO - Processed 6100000 reads so far
2011-05-20 10:13:36,196 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:102990143-123010143
2011-05-20 10:13:44,924 - INFO - Processed 6200000 reads so far
2011-05-20 10:13:56,010 - INFO - Processed 6300000 reads so far
2011-05-20 10:14:07,209 - INFO - Processed 6400000 reads so far
2011-05-20 10:14:18,204 - INFO - Processed 6500000 reads so far
2011-05-20 10:14:29,645 - INFO - Processed 6600000 reads so far
2011-05-20 10:14:41,047 - INFO - Processed 6700000 reads so far
2011-05-20 10:14:51,994 - INFO - Processed 6800000 reads so far
2011-05-20 10:15:03,377 - INFO - Processed 6900000 reads so far
2011-05-20 10:15:14,907 - INFO - Processed 7000000 reads so far
2011-05-20 10:15:25,807 - INFO - Processed 7100000 reads so far
2011-05-20 10:15:36,342 - INFO - Processed 7200000 reads so far
2011-05-20 10:15:45,073 - INFO - Processed 7300000 reads so far
2011-05-20 10:15:47,823 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:122990161-143010161
2011-05-20 10:15:53,915 - INFO - Processed 7400000 reads so far
2011-05-20 10:16:01,700 - INFO - Processed 7500000 reads so far
2011-05-20 10:16:13,613 - INFO - Processed 7600000 reads so far
2011-05-20 10:16:25,375 - INFO - Processed 7700000 reads so far
2011-05-20 10:16:30,235 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:2990003-23010003
2011-05-20 10:16:35,219 - INFO - Processed 7800000 reads so far
2011-05-20 10:16:44,575 - INFO - Processed 7900000 reads so far
2011-05-20 10:16:55,230 - INFO - Processed 8000000 reads so far
2011-05-20 10:17:05,170 - INFO - Processed 8100000 reads so far
2011-05-20 10:17:14,798 - INFO - Processed 8200000 reads so far
2011-05-20 10:17:23,978 - INFO - Processed 8300000 reads so far
2011-05-20 10:17:35,721 - INFO - Processed 8400000 reads so far
2011-05-20 10:17:46,242 - INFO - Processed 8500000 reads so far
2011-05-20 10:17:54,703 - INFO - Processed 8600000 reads so far
2011-05-20 10:18:04,046 - INFO - Processed 8700000 reads so far
2011-05-20 10:18:13,417 - INFO - Processed 8800000 reads so far
2011-05-20 10:18:25,293 - INFO - Processed 8900000 reads so far
2011-05-20 10:18:38,667 - INFO - Processed 9000000 reads so far
2011-05-20 10:18:51,824 - INFO - Processed 9100000 reads so far
2011-05-20 10:18:54,269 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:22990010-43010010
2011-05-20 10:19:01,474 - INFO - Processed 9200000 reads so far
2011-05-20 10:19:10,256 - INFO - Processed 9300000 reads so far
2011-05-20 10:19:17,379 - INFO - Processed 9400000 reads so far
2011-05-20 10:19:24,270 - INFO - Processed 9500000 reads so far
2011-05-20 10:19:36,043 - INFO - Processed 9600000 reads so far
2011-05-20 10:19:47,080 - INFO - Processed 9700000 reads so far
2011-05-20 10:19:59,174 - INFO - Processed 9800000 reads so far
2011-05-20 10:20:08,314 - INFO - Processed 9900000 reads so far
2011-05-20 10:20:17,797 - INFO - Processed 10000000 reads so far
2011-05-20 10:20:25,914 - INFO - Processed 10100000 reads so far
2011-05-20 10:20:35,640 - INFO - Processed 10200000 reads so far
2011-05-20 10:20:44,560 - INFO - Processed 10300000 reads so far
2011-05-20 10:20:47,005 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:42990089-63010089
2011-05-20 10:20:53,381 - INFO - Processed 10400000 reads so far
2011-05-20 10:21:01,150 - INFO - Processed 10500000 reads so far
2011-05-20 10:21:09,169 - INFO - Processed 10600000 reads so far
2011-05-20 10:21:19,207 - INFO - Processed 10700000 reads so far
2011-05-20 10:21:29,430 - INFO - Processed 10800000 reads so far
2011-05-20 10:21:38,782 - INFO - Processed 10900000 reads so far
2011-05-20 10:21:46,866 - INFO - Processed 11000000 reads so far
2011-05-20 10:21:55,139 - INFO - Processed 11100000 reads so far
2011-05-20 10:22:05,174 - INFO - Processed 11200000 reads so far
2011-05-20 10:22:20,481 - INFO - Processed 11300000 reads so far
2011-05-20 10:22:28,236 - INFO - Processed 11400000 reads so far
2011-05-20 10:22:37,999 - INFO - Processed 11500000 reads so far
2011-05-20 10:22:46,847 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:62990105-83010105
2011-05-20 10:22:48,529 - INFO - Processed 11600000 reads so far
2011-05-20 10:22:57,815 - INFO - Processed 11700000 reads so far
2011-05-20 10:23:07,004 - INFO - Processed 11800000 reads so far
2011-05-20 10:23:16,388 - INFO - Processed 11900000 reads so far
2011-05-20 10:23:26,800 - INFO - Processed 12000000 reads so far
2011-05-20 10:23:37,299 - INFO - Processed 12100000 reads so far
2011-05-20 10:23:46,521 - INFO - Processed 12200000 reads so far
2011-05-20 10:23:59,657 - INFO - Processed 12300000 reads so far
2011-05-20 10:24:10,203 - INFO - Processed 12400000 reads so far
2011-05-20 10:24:20,219 - INFO - Processed 12500000 reads so far
2011-05-20 10:24:30,716 - INFO - Processed 12600000 reads so far
2011-05-20 10:24:39,424 - INFO - Processed 12700000 reads so far
2011-05-20 10:24:48,807 - INFO - Processed 12800000 reads so far
2011-05-20 10:24:50,457 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:82990120-103010120
2011-05-20 10:24:58,115 - INFO - Processed 12900000 reads so far
2011-05-20 10:25:07,232 - INFO - Processed 13000000 reads so far
2011-05-20 10:25:16,647 - INFO - Processed 13100000 reads so far
2011-05-20 10:25:26,674 - INFO - Processed 13200000 reads so far
2011-05-20 10:25:35,874 - INFO - Processed 13300000 reads so far
2011-05-20 10:25:46,303 - INFO - Processed 13400000 reads so far
2011-05-20 10:25:56,715 - INFO - Processed 13500000 reads so far
2011-05-20 10:26:07,565 - INFO - Processed 13600000 reads so far
2011-05-20 10:26:18,779 - INFO - Processed 13700000 reads so far
2011-05-20 10:26:29,690 - INFO - Processed 13800000 reads so far
2011-05-20 10:26:39,698 - INFO - Processed 13900000 reads so far
2011-05-20 10:26:49,391 - INFO - Processed 14000000 reads so far
2011-05-20 10:26:51,023 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:102990130-123010130
2011-05-20 10:26:59,916 - INFO - Processed 14100000 reads so far
2011-05-20 10:27:13,334 - INFO - Processed 14200000 reads so far
2011-05-20 10:27:23,285 - INFO - Processed 14300000 reads so far
2011-05-20 10:27:34,087 - INFO - Processed 14400000 reads so far
2011-05-20 10:27:45,804 - INFO - Processed 14500000 reads so far
2011-05-20 10:27:55,602 - INFO - Processed 14600000 reads so far
2011-05-20 10:28:06,655 - INFO - Processed 14700000 reads so far
2011-05-20 10:28:18,751 - INFO - Processed 14800000 reads so far
2011-05-20 10:28:29,641 - INFO - Processed 14900000 reads so far
2011-05-20 10:28:38,544 - INFO - Processed 15000000 reads so far
2011-05-20 10:28:48,207 - INFO - Processed 15100000 reads so far
2011-05-20 10:28:56,809 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:2990021-23010021
2011-05-20 10:29:01,229 - INFO - Processed 15200000 reads so far
2011-05-20 10:29:08,792 - INFO - Processed 15300000 reads so far
2011-05-20 10:29:15,730 - INFO - Processed 15400000 reads so far
2011-05-20 10:29:24,507 - INFO - Processed 15500000 reads so far
2011-05-20 10:29:33,736 - INFO - Processed 15600000 reads so far
2011-05-20 10:29:42,355 - INFO - Processed 15700000 reads so far
2011-05-20 10:29:52,533 - INFO - Processed 15800000 reads so far
2011-05-20 10:30:01,785 - INFO - Processed 15900000 reads so far
2011-05-20 10:30:12,056 - INFO - Processed 16000000 reads so far
2011-05-20 10:30:20,084 - INFO - Processed 16100000 reads so far
2011-05-20 10:30:29,033 - INFO - Processed 16200000 reads so far
2011-05-20 10:30:37,224 - INFO - Processed 16300000 reads so far
2011-05-20 10:30:44,735 - INFO - Processed 16400000 reads so far
2011-05-20 10:30:56,168 - INFO - Processed 16500000 reads so far
2011-05-20 10:31:05,853 - INFO - Processed 16600000 reads so far
2011-05-20 10:31:06,293 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:22990185-43010185
2011-05-20 10:31:17,142 - INFO - Processed 16700000 reads so far
2011-05-20 10:31:29,459 - INFO - Processed 16800000 reads so far
2011-05-20 10:31:40,840 - INFO - Processed 16900000 reads so far
2011-05-20 10:31:53,523 - INFO - Processed 17000000 reads so far
2011-05-20 10:32:06,952 - INFO - Processed 17100000 reads so far
2011-05-20 10:32:18,072 - INFO - Processed 17200000 reads so far
2011-05-20 10:32:27,129 - INFO - Processed 17300000 reads so far
2011-05-20 10:32:38,023 - INFO - Processed 17400000 reads so far
2011-05-20 10:32:47,126 - INFO - Processed 17500000 reads so far
2011-05-20 10:32:55,217 - INFO - Processed 17600000 reads so far
2011-05-20 10:33:04,044 - INFO - Processed 17700000 reads so far
2011-05-20 10:33:08,074 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:42990207-63010207
2011-05-20 10:33:12,128 - INFO - Processed 17800000 reads so far
2011-05-20 10:33:20,288 - INFO - Processed 17900000 reads so far
2011-05-20 10:33:29,687 - INFO - Processed 18000000 reads so far
2011-05-20 10:33:38,143 - INFO - Processed 18100000 reads so far
2011-05-20 10:33:47,291 - INFO - Processed 18200000 reads so far
2011-05-20 10:33:56,000 - INFO - Processed 18300000 reads so far
2011-05-20 10:34:05,698 - INFO - Processed 18400000 reads so far
2011-05-20 10:34:13,607 - INFO - Processed 18500000 reads so far
2011-05-20 10:34:22,949 - INFO - Processed 18600000 reads so far
2011-05-20 10:34:31,122 - INFO - Processed 18700000 reads so far
2011-05-20 10:34:40,253 - INFO - Processed 18800000 reads so far
2011-05-20 10:34:48,164 - INFO - Processed 18900000 reads so far
2011-05-20 10:34:49,308 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:62990237-83010237
2011-05-20 10:34:56,244 - INFO - Processed 19000000 reads so far
2011-05-20 10:35:06,694 - INFO - Processed 19100000 reads so far
2011-05-20 10:35:14,893 - INFO - Processed 19200000 reads so far
2011-05-20 10:35:23,285 - INFO - Processed 19300000 reads so far
2011-05-20 10:35:31,317 - INFO - Processed 19400000 reads so far
2011-05-20 10:35:38,714 - INFO - Processed 19500000 reads so far
2011-05-20 10:35:45,944 - INFO - Processed 19600000 reads so far
2011-05-20 10:35:55,695 - INFO - Processed 19700000 reads so far
2011-05-20 10:36:04,522 - INFO - Processed 19800000 reads so far
2011-05-20 10:36:12,815 - INFO - Processed 19900000 reads so far
2011-05-20 10:36:20,733 - INFO - Processed 20000000 reads so far
2011-05-20 10:36:29,505 - INFO - Processed 20100000 reads so far
2011-05-20 10:36:32,915 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:82990247-103010247
2011-05-20 10:36:40,495 - INFO - Processed 20200000 reads so far
2011-05-20 10:36:51,084 - INFO - Processed 20300000 reads so far
2011-05-20 10:37:00,219 - INFO - Processed 20400000 reads so far
2011-05-20 10:37:11,148 - INFO - Processed 20500000 reads so far
2011-05-20 10:37:20,763 - INFO - Processed 20600000 reads so far
2011-05-20 10:37:28,727 - INFO - Processed 20700000 reads so far
2011-05-20 10:37:37,012 - INFO - Processed 20800000 reads so far
2011-05-20 10:37:47,988 - INFO - Processed 20900000 reads so far
2011-05-20 10:37:55,764 - INFO - Processed 21000000 reads so far
2011-05-20 10:38:04,740 - INFO - Processed 21100000 reads so far
2011-05-20 10:38:14,647 - INFO - Processed 21200000 reads so far
2011-05-20 10:38:23,709 - INFO - Processed 21300000 reads so far
2011-05-20 10:38:25,472 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:102990287-123010287
2011-05-20 10:38:33,064 - INFO - Processed 21400000 reads so far
2011-05-20 10:38:43,384 - INFO - Processed 21500000 reads so far
2011-05-20 10:38:54,002 - INFO - Processed 21600000 reads so far
2011-05-20 10:39:05,483 - INFO - Processed 21700000 reads so far
2011-05-20 10:39:14,083 - INFO - Processed 21800000 reads so far
2011-05-20 10:39:24,308 - INFO - Processed 21900000 reads so far
2011-05-20 10:39:33,730 - INFO - Processed 22000000 reads so far
2011-05-20 10:39:41,406 - INFO - Processed 22100000 reads so far
2011-05-20 10:39:50,817 - INFO - Processed 22200000 reads so far
2011-05-20 10:39:57,961 - INFO - Processed 22300000 reads so far
2011-05-20 10:40:06,735 - INFO - Processed 22400000 reads so far
2011-05-20 10:40:14,854 - INFO - Processed 22500000 reads so far
2011-05-20 10:40:14,907 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:2990000-23010000
2011-05-20 10:40:28,456 - INFO - Processed 22600000 reads so far
2011-05-20 10:40:36,765 - INFO - Processed 22700000 reads so far
2011-05-20 10:40:46,112 - INFO - Processed 22800000 reads so far
2011-05-20 10:40:53,586 - INFO - Processed 22900000 reads so far
2011-05-20 10:41:01,685 - INFO - Processed 23000000 reads so far
2011-05-20 10:41:09,764 - INFO - Processed 23100000 reads so far
2011-05-20 10:41:18,708 - INFO - Processed 23200000 reads so far
2011-05-20 10:41:26,308 - INFO - Processed 23300000 reads so far
2011-05-20 10:41:34,712 - INFO - Processed 23400000 reads so far
2011-05-20 10:41:44,256 - INFO - Processed 23500000 reads so far
2011-05-20 10:41:56,143 - INFO - Processed 23600000 reads so far
2011-05-20 10:42:03,501 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:22990364-43010364
2011-05-20 10:42:04,099 - INFO - Processed 23700000 reads so far
2011-05-20 10:42:12,245 - INFO - Processed 23800000 reads so far
2011-05-20 10:42:21,366 - INFO - Processed 23900000 reads so far
2011-05-20 10:42:29,131 - INFO - Processed 24000000 reads so far
2011-05-20 10:42:36,648 - INFO - Processed 24100000 reads so far
2011-05-20 10:42:47,025 - INFO - Processed 24200000 reads so far
2011-05-20 10:42:55,923 - INFO - Processed 24300000 reads so far
2011-05-20 10:43:04,014 - INFO - Processed 24400000 reads so far
2011-05-20 10:43:11,875 - INFO - Processed 24500000 reads so far
2011-05-20 10:43:21,246 - INFO - Processed 24600000 reads so far
2011-05-20 10:43:29,356 - INFO - Processed 24700000 reads so far
2011-05-20 10:43:38,161 - INFO - Processed 24800000 reads so far
2011-05-20 10:43:48,598 - INFO - Processed 24900000 reads so far
2011-05-20 10:43:51,950 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:42990370-63010370
2011-05-20 10:43:59,454 - INFO - Processed 25000000 reads so far
2011-05-20 10:44:07,714 - INFO - Processed 25100000 reads so far
2011-05-20 10:44:15,776 - INFO - Processed 25200000 reads so far
2011-05-20 10:44:25,672 - INFO - Processed 25300000 reads so far
2011-05-20 10:44:34,115 - INFO - Processed 25400000 reads so far
2011-05-20 10:44:42,267 - INFO - Processed 25500000 reads so far
2011-05-20 10:44:52,684 - INFO - Processed 25600000 reads so far
2011-05-20 10:45:00,443 - INFO - Processed 25700000 reads so far
2011-05-20 10:45:08,197 - INFO - Processed 25800000 reads so far
2011-05-20 10:45:17,829 - INFO - Processed 25900000 reads so far
2011-05-20 10:45:25,693 - INFO - Processed 26000000 reads so far
2011-05-20 10:45:35,347 - INFO - Processed 26100000 reads so far
2011-05-20 10:45:45,180 - INFO - Processed 26200000 reads so far
2011-05-20 10:45:45,966 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:62990371-83010371
2011-05-20 10:45:52,938 - INFO - Processed 26300000 reads so far
2011-05-20 10:46:01,406 - INFO - Processed 26400000 reads so far
2011-05-20 10:46:09,631 - INFO - Processed 26500000 reads so far
2011-05-20 10:46:18,045 - INFO - Processed 26600000 reads so far
2011-05-20 10:46:26,965 - INFO - Processed 26700000 reads so far
2011-05-20 10:46:37,878 - INFO - Processed 26800000 reads so far
2011-05-20 10:46:48,338 - INFO - Processed 26900000 reads so far
2011-05-20 10:47:02,096 - INFO - Processed 27000000 reads so far
2011-05-20 10:47:10,166 - INFO - Processed 27100000 reads so far
2011-05-20 10:47:17,712 - INFO - Processed 27200000 reads so far
2011-05-20 10:47:25,559 - INFO - Processed 27300000 reads so far
2011-05-20 10:47:34,381 - INFO - Processed 27400000 reads so far
2011-05-20 10:47:40,074 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:82990378-103010378
2011-05-20 10:47:42,723 - INFO - Processed 27500000 reads so far
2011-05-20 10:47:51,203 - INFO - Processed 27600000 reads so far
2011-05-20 10:48:00,304 - INFO - Processed 27700000 reads so far
2011-05-20 10:48:12,360 - INFO - Processed 27800000 reads so far
2011-05-20 10:48:23,481 - INFO - Processed 27900000 reads so far
2011-05-20 10:48:34,555 - INFO - Processed 28000000 reads so far
2011-05-20 10:48:45,973 - INFO - Processed 28100000 reads so far
2011-05-20 10:48:57,119 - INFO - Processed 28200000 reads so far
2011-05-20 10:49:11,649 - INFO - Processed 28300000 reads so far
2011-05-20 10:49:20,888 - INFO - Processed 28400000 reads so far
2011-05-20 10:49:28,923 - INFO - Processed 28500000 reads so far
2011-05-20 10:49:37,793 - INFO - Processed 28600000 reads so far
2011-05-20 10:49:41,298 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:102990433-123010433
2011-05-20 10:49:45,924 - INFO - Processed 28700000 reads so far
2011-05-20 10:49:55,683 - INFO - Processed 28800000 reads so far
2011-05-20 10:50:03,745 - INFO - Processed 28900000 reads so far
2011-05-20 10:50:12,566 - INFO - Processed 29000000 reads so far
2011-05-20 10:50:20,869 - INFO - Processed 29100000 reads so far
2011-05-20 10:50:30,851 - INFO - Processed 29200000 reads so far
2011-05-20 10:50:39,728 - INFO - Processed 29300000 reads so far
2011-05-20 10:50:48,019 - INFO - Processed 29400000 reads so far
2011-05-20 10:50:58,975 - INFO - Processed 29500000 reads so far
2011-05-20 10:51:10,024 - INFO - Processed 29600000 reads so far
2011-05-20 10:51:21,255 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13_random:0-20010000
2011-05-20 10:51:22,241 - INFO - Processed 29700000 reads so far
2011-05-20 10:51:22,695 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:2990015-23010015
2011-05-20 10:51:34,544 - INFO - Processed 29800000 reads so far
2011-05-20 10:51:45,746 - INFO - Processed 29900000 reads so far
2011-05-20 10:51:57,062 - INFO - Processed 30000000 reads so far
2011-05-20 10:52:07,947 - INFO - Processed 30100000 reads so far
2011-05-20 10:52:18,785 - INFO - Processed 30200000 reads so far
2011-05-20 10:52:32,452 - INFO - Processed 30300000 reads so far
2011-05-20 10:52:43,487 - INFO - Processed 30400000 reads so far
2011-05-20 10:52:54,550 - INFO - Processed 30500000 reads so far
2011-05-20 10:53:06,287 - INFO - Processed 30600000 reads so far
2011-05-20 10:53:17,078 - INFO - Processed 30700000 reads so far
2011-05-20 10:53:28,016 - INFO - Processed 30800000 reads so far
2011-05-20 10:53:39,831 - INFO - Processed 30900000 reads so far
2011-05-20 10:53:46,101 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:22990042-43010042
2011-05-20 10:53:51,866 - INFO - Processed 31000000 reads so far
2011-05-20 10:54:03,624 - INFO - Processed 31100000 reads so far
2011-05-20 10:54:14,833 - INFO - Processed 31200000 reads so far
2011-05-20 10:54:27,365 - INFO - Processed 31300000 reads so far
2011-05-20 10:54:39,779 - INFO - Processed 31400000 reads so far
2011-05-20 10:54:52,735 - INFO - Processed 31500000 reads so far
2011-05-20 10:55:04,367 - INFO - Processed 31600000 reads so far
2011-05-20 10:55:15,513 - INFO - Processed 31700000 reads so far
2011-05-20 10:55:28,368 - INFO - Processed 31800000 reads so far
2011-05-20 10:55:39,519 - INFO - Processed 31900000 reads so far
2011-05-20 10:55:50,011 - INFO - Processed 32000000 reads so far
2011-05-20 10:55:59,463 - INFO - Processed 32100000 reads so far
2011-05-20 10:56:06,013 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:42990110-63010110
2011-05-20 10:56:07,964 - INFO - Processed 32200000 reads so far
2011-05-20 10:56:16,119 - INFO - Processed 32300000 reads so far
2011-05-20 10:56:24,122 - INFO - Processed 32400000 reads so far
2011-05-20 10:56:32,901 - INFO - Processed 32500000 reads so far
2011-05-20 10:56:41,662 - INFO - Processed 32600000 reads so far
2011-05-20 10:56:51,521 - INFO - Processed 32700000 reads so far
2011-05-20 10:56:59,912 - INFO - Processed 32800000 reads so far
2011-05-20 10:57:09,524 - INFO - Processed 32900000 reads so far
2011-05-20 10:57:19,698 - INFO - Processed 33000000 reads so far
2011-05-20 10:57:28,732 - INFO - Processed 33100000 reads so far
2011-05-20 10:57:37,614 - INFO - Processed 33200000 reads so far
2011-05-20 10:57:47,443 - INFO - Processed 33300000 reads so far
2011-05-20 10:57:56,266 - INFO - Processed 33400000 reads so far
2011-05-20 10:58:03,875 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:62990126-83010126
2011-05-20 10:58:03,997 - INFO - Processed 33500000 reads so far
2011-05-20 10:58:12,145 - INFO - Processed 33600000 reads so far
2011-05-20 10:58:20,177 - INFO - Processed 33700000 reads so far
2011-05-20 10:58:28,389 - INFO - Processed 33800000 reads so far
2011-05-20 10:58:36,691 - INFO - Processed 33900000 reads so far
2011-05-20 10:58:44,041 - INFO - Processed 34000000 reads so far
2011-05-20 10:58:51,606 - INFO - Processed 34100000 reads so far
2011-05-20 10:59:00,922 - INFO - Processed 34200000 reads so far
2011-05-20 10:59:09,016 - INFO - Processed 34300000 reads so far
2011-05-20 10:59:17,082 - INFO - Processed 34400000 reads so far
2011-05-20 10:59:25,013 - INFO - Processed 34500000 reads so far
2011-05-20 10:59:33,346 - INFO - Processed 34600000 reads so far
2011-05-20 10:59:41,725 - INFO - Processed 34700000 reads so far
2011-05-20 10:59:45,383 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:82990142-103010142
2011-05-20 10:59:49,939 - INFO - Processed 34800000 reads so far
2011-05-20 10:59:57,146 - INFO - Processed 34900000 reads so far
2011-05-20 11:00:06,371 - INFO - Processed 35000000 reads so far
2011-05-20 11:00:14,992 - INFO - Processed 35100000 reads so far
2011-05-20 11:00:24,688 - INFO - Processed 35200000 reads so far
2011-05-20 11:00:32,602 - INFO - Processed 35300000 reads so far
2011-05-20 11:00:41,717 - INFO - Processed 35400000 reads so far
2011-05-20 11:00:52,426 - INFO - Processed 35500000 reads so far
2011-05-20 11:01:02,722 - INFO - Processed 35600000 reads so far
2011-05-20 11:01:12,273 - INFO - Processed 35700000 reads so far
2011-05-20 11:01:22,706 - INFO - Processed 35800000 reads so far
2011-05-20 11:01:27,692 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:102990145-123010145
2011-05-20 11:01:36,541 - INFO - Processed 35900000 reads so far
2011-05-20 11:01:45,450 - INFO - Processed 36000000 reads so far
2011-05-20 11:01:53,908 - INFO - Processed 36100000 reads so far
2011-05-20 11:02:01,716 - INFO - Processed 36200000 reads so far
2011-05-20 11:02:10,056 - INFO - Processed 36300000 reads so far
2011-05-20 11:02:20,583 - INFO - Processed 36400000 reads so far
2011-05-20 11:02:29,202 - INFO - Processed 36500000 reads so far
2011-05-20 11:02:37,520 - INFO - Processed 36600000 reads so far
2011-05-20 11:02:47,397 - INFO - Processed 36700000 reads so far
2011-05-20 11:02:55,155 - INFO - Processed 36800000 reads so far
2011-05-20 11:03:03,496 - INFO - Processed 36900000 reads so far
2011-05-20 11:03:12,391 - INFO - Processed 37000000 reads so far
2011-05-20 11:03:13,881 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:122990172-143010172
2011-05-20 11:03:21,739 - INFO - Processed 37100000 reads so far
2011-05-20 11:03:25,401 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:2990005-23010005
2011-05-20 11:03:29,832 - INFO - Processed 37200000 reads so far
2011-05-20 11:03:38,825 - INFO - Processed 37300000 reads so far
2011-05-20 11:03:49,007 - INFO - Processed 37400000 reads so far
2011-05-20 11:03:59,315 - INFO - Processed 37500000 reads so far
2011-05-20 11:04:08,262 - INFO - Processed 37600000 reads so far
2011-05-20 11:04:16,406 - INFO - Processed 37700000 reads so far
2011-05-20 11:04:25,966 - INFO - Processed 37800000 reads so far
2011-05-20 11:04:36,637 - INFO - Processed 37900000 reads so far
2011-05-20 11:04:46,350 - INFO - Processed 38000000 reads so far
2011-05-20 11:04:54,553 - INFO - Processed 38100000 reads so far
2011-05-20 11:05:04,576 - INFO - Processed 38200000 reads so far
2011-05-20 11:05:14,109 - INFO - Processed 38300000 reads so far
2011-05-20 11:05:15,227 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:22990024-43010024
2011-05-20 11:05:24,040 - INFO - Processed 38400000 reads so far
2011-05-20 11:05:33,945 - INFO - Processed 38500000 reads so far
2011-05-20 11:05:42,416 - INFO - Processed 38600000 reads so far
2011-05-20 11:05:51,806 - INFO - Processed 38700000 reads so far
2011-05-20 11:06:01,461 - INFO - Processed 38800000 reads so far
2011-05-20 11:06:12,673 - INFO - Processed 38900000 reads so far
2011-05-20 11:06:20,739 - INFO - Processed 39000000 reads so far
2011-05-20 11:06:29,284 - INFO - Processed 39100000 reads so far
2011-05-20 11:06:37,577 - INFO - Processed 39200000 reads so far
2011-05-20 11:06:46,297 - INFO - Processed 39300000 reads so far
2011-05-20 11:06:53,992 - INFO - Processed 39400000 reads so far
2011-05-20 11:07:01,767 - INFO - Processed 39500000 reads so far
2011-05-20 11:07:04,483 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:42990067-63010067
2011-05-20 11:07:09,987 - INFO - Processed 39600000 reads so far
2011-05-20 11:07:17,814 - INFO - Processed 39700000 reads so far
2011-05-20 11:07:27,072 - INFO - Processed 39800000 reads so far
2011-05-20 11:07:36,528 - INFO - Processed 39900000 reads so far
2011-05-20 11:07:44,883 - INFO - Processed 40000000 reads so far
2011-05-20 11:07:53,023 - INFO - Processed 40100000 reads so far
2011-05-20 11:08:01,985 - INFO - Processed 40200000 reads so far
2011-05-20 11:08:09,895 - INFO - Processed 40300000 reads so far
2011-05-20 11:08:17,827 - INFO - Processed 40400000 reads so far
2011-05-20 11:08:25,528 - INFO - Processed 40500000 reads so far
2011-05-20 11:08:35,287 - INFO - Processed 40600000 reads so far
2011-05-20 11:08:44,758 - INFO - Processed 40700000 reads so far
2011-05-20 11:08:46,105 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:62990091-83010091
2011-05-20 11:08:53,970 - INFO - Processed 40800000 reads so far
2011-05-20 11:09:01,799 - INFO - Processed 40900000 reads so far
2011-05-20 11:09:09,431 - INFO - Processed 41000000 reads so far
2011-05-20 11:09:18,764 - INFO - Processed 41100000 reads so far
2011-05-20 11:09:27,381 - INFO - Processed 41200000 reads so far
2011-05-20 11:09:51,860 - INFO - Processed 41300000 reads so far
2011-05-20 11:10:04,072 - INFO - Processed 41400000 reads so far
2011-05-20 11:10:19,770 - INFO - Processed 41500000 reads so far
2011-05-20 11:10:42,200 - INFO - Processed 41600000 reads so far
2011-05-20 11:11:00,615 - INFO - Processed 41700000 reads so far
2011-05-20 11:11:19,411 - INFO - Processed 41800000 reads so far
2011-05-20 11:11:38,472 - INFO - Processed 41900000 reads so far
2011-05-20 11:11:52,603 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:82990151-103010151
2011-05-20 11:11:54,875 - INFO - Processed 42000000 reads so far
2011-05-20 11:12:06,085 - INFO - Processed 42100000 reads so far
2011-05-20 11:12:17,992 - INFO - Processed 42200000 reads so far
2011-05-20 11:12:28,934 - INFO - Processed 42300000 reads so far
2011-05-20 11:12:40,234 - INFO - Processed 42400000 reads so far
2011-05-20 11:12:51,492 - INFO - Processed 42500000 reads so far
2011-05-20 11:13:01,118 - INFO - Processed 42600000 reads so far
2011-05-20 11:13:11,506 - INFO - Processed 42700000 reads so far
2011-05-20 11:13:21,547 - INFO - Processed 42800000 reads so far
2011-05-20 11:13:31,523 - INFO - Processed 42900000 reads so far
2011-05-20 11:13:44,107 - INFO - Processed 43000000 reads so far
2011-05-20 11:13:52,683 - INFO - Processed 43100000 reads so far
2011-05-20 11:14:02,115 - INFO - Processed 43200000 reads so far
2011-05-20 11:14:04,243 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:102990189-123010189
2011-05-20 11:14:06,216 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:2990069-23010069
2011-05-20 11:14:09,723 - INFO - Processed 43300000 reads so far
2011-05-20 11:14:19,937 - INFO - Processed 43400000 reads so far
2011-05-20 11:14:28,628 - INFO - Processed 43500000 reads so far
2011-05-20 11:14:36,427 - INFO - Processed 43600000 reads so far
2011-05-20 11:14:46,540 - INFO - Processed 43700000 reads so far
2011-05-20 11:14:57,486 - INFO - Processed 43800000 reads so far
2011-05-20 11:15:10,647 - INFO - Processed 43900000 reads so far
2011-05-20 11:15:21,621 - INFO - Processed 44000000 reads so far
2011-05-20 11:15:32,817 - INFO - Processed 44100000 reads so far
2011-05-20 11:15:45,454 - INFO - Processed 44200000 reads so far
2011-05-20 11:15:56,656 - INFO - Processed 44300000 reads so far
2011-05-20 11:16:07,715 - INFO - Processed 44400000 reads so far
2011-05-20 11:16:19,003 - INFO - Processed 44500000 reads so far
2011-05-20 11:16:25,245 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:22990072-43010072
2011-05-20 11:16:29,258 - INFO - Processed 44600000 reads so far
2011-05-20 11:16:40,155 - INFO - Processed 44700000 reads so far
2011-05-20 11:16:51,850 - INFO - Processed 44800000 reads so far
2011-05-20 11:17:02,857 - INFO - Processed 44900000 reads so far
2011-05-20 11:17:13,920 - INFO - Processed 45000000 reads so far
2011-05-20 11:17:24,822 - INFO - Processed 45100000 reads so far
2011-05-20 11:17:36,979 - INFO - Processed 45200000 reads so far
2011-05-20 11:17:48,456 - INFO - Processed 45300000 reads so far
2011-05-20 11:17:59,523 - INFO - Processed 45400000 reads so far
2011-05-20 11:18:11,641 - INFO - Processed 45500000 reads so far
2011-05-20 11:18:19,986 - INFO - Processed 45600000 reads so far
2011-05-20 11:18:30,937 - INFO - Processed 45700000 reads so far
2011-05-20 11:19:11,824 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:42990130-63010130
2011-05-20 11:19:28,271 - INFO - Processed 45800000 reads so far
2011-05-20 11:19:39,327 - INFO - Processed 45900000 reads so far
2011-05-20 11:19:50,543 - INFO - Processed 46000000 reads so far
2011-05-20 11:20:02,919 - INFO - Processed 46100000 reads so far
2011-05-20 11:20:13,798 - INFO - Processed 46200000 reads so far
2011-05-20 11:20:23,883 - INFO - Processed 46300000 reads so far
2011-05-20 11:20:36,391 - INFO - Processed 46400000 reads so far
2011-05-20 11:20:45,757 - INFO - Processed 46500000 reads so far
2011-05-20 11:20:57,431 - INFO - Processed 46600000 reads so far
2011-05-20 11:21:10,190 - INFO - Processed 46700000 reads so far
2011-05-20 11:21:21,034 - INFO - Processed 46800000 reads so far
2011-05-20 11:21:31,485 - INFO - Processed 46900000 reads so far
2011-05-20 11:21:39,390 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:62990161-83010161
2011-05-20 11:21:43,545 - INFO - Processed 47000000 reads so far
2011-05-20 11:21:55,769 - INFO - Processed 47100000 reads so far
2011-05-20 11:22:06,800 - INFO - Processed 47200000 reads so far
2011-05-20 11:22:18,010 - INFO - Processed 47300000 reads so far
2011-05-20 11:22:28,604 - INFO - Processed 47400000 reads so far
2011-05-20 11:22:37,797 - INFO - Processed 47500000 reads so far
2011-05-20 11:22:47,879 - INFO - Processed 47600000 reads so far
2011-05-20 11:22:57,771 - INFO - Processed 47700000 reads so far
2011-05-20 11:23:07,822 - INFO - Processed 47800000 reads so far
2011-05-20 11:23:17,868 - INFO - Processed 47900000 reads so far
2011-05-20 11:23:27,254 - INFO - Processed 48000000 reads so far
2011-05-20 11:23:35,104 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:82990178-103010178
2011-05-20 11:23:35,850 - INFO - Processed 48100000 reads so far
2011-05-20 11:23:44,251 - INFO - Processed 48200000 reads so far
2011-05-20 11:23:52,538 - INFO - Processed 48300000 reads so far
2011-05-20 11:24:01,149 - INFO - Processed 48400000 reads so far
2011-05-20 11:24:09,652 - INFO - Processed 48500000 reads so far
2011-05-20 11:24:19,318 - INFO - Processed 48600000 reads so far
2011-05-20 11:24:32,919 - INFO - Processed 48700000 reads so far
2011-05-20 11:24:44,015 - INFO - Processed 48800000 reads so far
2011-05-20 11:24:54,552 - INFO - Processed 48900000 reads so far
2011-05-20 11:25:08,689 - INFO - Processed 49000000 reads so far
2011-05-20 11:25:12,116 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16_random:0-20010119
2011-05-20 11:25:12,159 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:2989987-23009987
2011-05-20 11:25:18,448 - INFO - Processed 49100000 reads so far
2011-05-20 11:25:28,395 - INFO - Processed 49200000 reads so far
2011-05-20 11:25:46,706 - INFO - Processed 49300000 reads so far
2011-05-20 11:25:59,607 - INFO - Processed 49400000 reads so far
2011-05-20 11:26:12,194 - INFO - Processed 49500000 reads so far
2011-05-20 11:26:23,301 - INFO - Processed 49600000 reads so far
2011-05-20 11:26:33,913 - INFO - Processed 49700000 reads so far
2011-05-20 11:26:44,600 - INFO - Processed 49800000 reads so far
2011-05-20 11:26:55,626 - INFO - Processed 49900000 reads so far
2011-05-20 11:27:05,920 - INFO - Processed 50000000 reads so far
2011-05-20 11:27:17,001 - INFO - Processed 50100000 reads so far
2011-05-20 11:27:24,771 - INFO - Processed 50200000 reads so far
2011-05-20 11:27:34,789 - INFO - Processed 50300000 reads so far
2011-05-20 11:27:43,058 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:22990018-43010018
2011-05-20 11:27:45,412 - INFO - Processed 50400000 reads so far
2011-05-20 11:27:57,470 - INFO - Processed 50500000 reads so far
2011-05-20 11:28:07,037 - INFO - Processed 50600000 reads so far
2011-05-20 11:28:15,921 - INFO - Processed 50700000 reads so far
2011-05-20 11:28:27,916 - INFO - Processed 50800000 reads so far
2011-05-20 11:28:38,647 - INFO - Processed 50900000 reads so far
2011-05-20 11:28:49,416 - INFO - Processed 51000000 reads so far
2011-05-20 11:29:02,264 - INFO - Processed 51100000 reads so far
2011-05-20 11:29:13,979 - INFO - Processed 51200000 reads so far
2011-05-20 11:29:25,285 - INFO - Processed 51300000 reads so far
2011-05-20 11:29:37,563 - INFO - Processed 51400000 reads so far
2011-05-20 11:29:47,406 - INFO - Processed 51500000 reads so far
2011-05-20 11:29:59,745 - INFO - Processed 51600000 reads so far
2011-05-20 11:30:02,503 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:42990058-63010058
2011-05-20 11:30:12,416 - INFO - Processed 51700000 reads so far
2011-05-20 11:30:22,203 - INFO - Processed 51800000 reads so far
2011-05-20 11:30:33,228 - INFO - Processed 51900000 reads so far
2011-05-20 11:30:44,701 - INFO - Processed 52000000 reads so far
2011-05-20 11:30:53,969 - INFO - Processed 52100000 reads so far
2011-05-20 11:31:02,075 - INFO - Processed 52200000 reads so far
2011-05-20 11:31:10,096 - INFO - Processed 52300000 reads so far
2011-05-20 11:31:20,048 - INFO - Processed 52400000 reads so far
2011-05-20 11:31:32,902 - INFO - Processed 52500000 reads so far
2011-05-20 11:31:45,045 - INFO - Processed 52600000 reads so far
2011-05-20 11:31:56,487 - INFO - Processed 52700000 reads so far
2011-05-20 11:32:07,316 - INFO - Processed 52800000 reads so far
2011-05-20 11:32:08,127 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:62990067-83010067
2011-05-20 11:32:19,439 - INFO - Processed 52900000 reads so far
2011-05-20 11:32:30,606 - INFO - Processed 53000000 reads so far
2011-05-20 11:32:41,806 - INFO - Processed 53100000 reads so far
2011-05-20 11:32:52,493 - INFO - Processed 53200000 reads so far
2011-05-20 11:33:02,983 - INFO - Processed 53300000 reads so far
2011-05-20 11:33:14,127 - INFO - Processed 53400000 reads so far
2011-05-20 11:33:24,744 - INFO - Processed 53500000 reads so far
2011-05-20 11:33:37,889 - INFO - Processed 53600000 reads so far
2011-05-20 11:33:49,028 - INFO - Processed 53700000 reads so far
2011-05-20 11:34:01,252 - INFO - Processed 53800000 reads so far
2011-05-20 11:34:26,824 - INFO - Processed 53900000 reads so far
2011-05-20 11:34:38,487 - INFO - Processed 54000000 reads so far
2011-05-20 11:34:44,910 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:82990161-103010161
2011-05-20 11:34:51,449 - INFO - Processed 54100000 reads so far
2011-05-20 11:35:02,283 - INFO - Processed 54200000 reads so far
2011-05-20 11:35:13,444 - INFO - Processed 54300000 reads so far
2011-05-20 11:35:24,211 - INFO - Processed 54400000 reads so far
2011-05-20 11:35:35,339 - INFO - Processed 54500000 reads so far
2011-05-20 11:35:46,270 - INFO - Processed 54600000 reads so far
2011-05-20 11:36:00,627 - INFO - Processed 54700000 reads so far
2011-05-20 11:36:09,949 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17_random:0-20010007
2011-05-20 11:36:12,516 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:2990002-23010002
2011-05-20 11:36:12,766 - INFO - Processed 54800000 reads so far
2011-05-20 11:36:23,684 - INFO - Processed 54900000 reads so far
2011-05-20 11:36:32,905 - INFO - Processed 55000000 reads so far
2011-05-20 11:36:42,242 - INFO - Processed 55100000 reads so far
2011-05-20 11:36:53,942 - INFO - Processed 55200000 reads so far
2011-05-20 11:37:05,007 - INFO - Processed 55300000 reads so far
2011-05-20 11:37:16,984 - INFO - Processed 55400000 reads so far
2011-05-20 11:37:28,803 - INFO - Processed 55500000 reads so far
2011-05-20 11:37:43,493 - INFO - Processed 55600000 reads so far
2011-05-20 11:37:54,074 - INFO - Processed 55700000 reads so far
2011-05-20 11:38:07,822 - INFO - Processed 55800000 reads so far
2011-05-20 11:38:18,776 - INFO - Processed 55900000 reads so far
2011-05-20 11:38:30,424 - INFO - Processed 56000000 reads so far
2011-05-20 11:38:37,292 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:22990019-43010019
2011-05-20 11:38:41,070 - INFO - Processed 56100000 reads so far
2011-05-20 11:38:52,173 - INFO - Processed 56200000 reads so far
2011-05-20 11:39:03,783 - INFO - Processed 56300000 reads so far
2011-05-20 11:39:15,971 - INFO - Processed 56400000 reads so far
2011-05-20 11:39:28,903 - INFO - Processed 56500000 reads so far
2011-05-20 11:39:40,228 - INFO - Processed 56600000 reads so far
2011-05-20 11:39:52,117 - INFO - Processed 56700000 reads so far
2011-05-20 11:40:03,080 - INFO - Processed 56800000 reads so far
2011-05-20 11:40:15,658 - INFO - Processed 56900000 reads so far
2011-05-20 11:40:28,998 - INFO - Processed 57000000 reads so far
2011-05-20 11:40:45,909 - INFO - Processed 57100000 reads so far
2011-05-20 11:40:58,732 - INFO - Processed 57200000 reads so far
2011-05-20 11:41:09,756 - INFO - Processed 57300000 reads so far
2011-05-20 11:41:09,758 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:42990039-63010039
2011-05-20 11:41:21,277 - INFO - Processed 57400000 reads so far
2011-05-20 11:41:36,326 - INFO - Processed 57500000 reads so far
2011-05-20 11:41:51,490 - INFO - Processed 57600000 reads so far
2011-05-20 11:42:04,319 - INFO - Processed 57700000 reads so far
2011-05-20 11:42:15,725 - INFO - Processed 57800000 reads so far
2011-05-20 11:42:28,161 - INFO - Processed 57900000 reads so far
2011-05-20 11:42:39,400 - INFO - Processed 58000000 reads so far
2011-05-20 11:42:50,525 - INFO - Processed 58100000 reads so far
2011-05-20 11:43:01,177 - INFO - Processed 58200000 reads so far
2011-05-20 11:43:12,700 - INFO - Processed 58300000 reads so far
2011-05-20 11:43:24,321 - INFO - Processed 58400000 reads so far
2011-05-20 11:43:35,699 - INFO - Processed 58500000 reads so far
2011-05-20 11:43:37,442 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:62990052-83010052
2011-05-20 11:43:47,181 - INFO - Processed 58600000 reads so far
2011-05-20 11:43:58,611 - INFO - Processed 58700000 reads so far
2011-05-20 11:44:11,320 - INFO - Processed 58800000 reads so far
2011-05-20 11:44:23,156 - INFO - Processed 58900000 reads so far
2011-05-20 11:44:34,153 - INFO - Processed 59000000 reads so far
2011-05-20 11:44:47,401 - INFO - Processed 59100000 reads so far
2011-05-20 11:44:58,565 - INFO - Processed 59200000 reads so far
2011-05-20 11:45:09,805 - INFO - Processed 59300000 reads so far
2011-05-20 11:45:19,717 - INFO - Processed 59400000 reads so far
2011-05-20 11:45:31,280 - INFO - Processed 59500000 reads so far
2011-05-20 11:45:42,420 - INFO - Processed 59600000 reads so far
2011-05-20 11:45:53,475 - INFO - Processed 59700000 reads so far
2011-05-20 11:46:00,151 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:82990091-103010091
2011-05-20 11:46:04,007 - INFO - Processed 59800000 reads so far
2011-05-20 11:46:14,875 - INFO - Processed 59900000 reads so far
2011-05-20 11:46:29,646 - INFO - Processed 60000000 reads so far
2011-05-20 11:46:41,200 - INFO - Processed 60100000 reads so far
2011-05-20 11:46:55,030 - INFO - Processed 60200000 reads so far
2011-05-20 11:46:58,393 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:2990006-23010006
2011-05-20 11:47:08,905 - INFO - Processed 60300000 reads so far
2011-05-20 11:47:19,997 - INFO - Processed 60400000 reads so far
2011-05-20 11:47:31,087 - INFO - Processed 60500000 reads so far
2011-05-20 11:47:44,084 - INFO - Processed 60600000 reads so far
2011-05-20 11:47:56,067 - INFO - Processed 60700000 reads so far
2011-05-20 11:48:08,325 - INFO - Processed 60800000 reads so far
2011-05-20 11:48:22,133 - INFO - Processed 60900000 reads so far
2011-05-20 11:48:32,571 - INFO - Processed 61000000 reads so far
2011-05-20 11:48:43,632 - INFO - Processed 61100000 reads so far
2011-05-20 11:48:52,368 - INFO - Processed 61200000 reads so far
2011-05-20 11:49:04,255 - INFO - Processed 61300000 reads so far
2011-05-20 11:49:15,307 - INFO - Processed 61400000 reads so far
2011-05-20 11:49:19,192 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:22990010-43010010
2011-05-20 11:49:25,425 - INFO - Processed 61500000 reads so far
2011-05-20 11:49:35,775 - INFO - Processed 61600000 reads so far
2011-05-20 11:49:48,196 - INFO - Processed 61700000 reads so far
2011-05-20 11:49:59,570 - INFO - Processed 61800000 reads so far
2011-05-20 11:50:11,081 - INFO - Processed 61900000 reads so far
2011-05-20 11:50:22,594 - INFO - Processed 62000000 reads so far
2011-05-20 11:50:34,125 - INFO - Processed 62100000 reads so far
2011-05-20 11:50:46,587 - INFO - Processed 62200000 reads so far
2011-05-20 11:50:58,623 - INFO - Processed 62300000 reads so far
2011-05-20 11:51:11,035 - INFO - Processed 62400000 reads so far
2011-05-20 11:51:24,516 - INFO - Processed 62500000 reads so far
2011-05-20 11:51:36,310 - INFO - Processed 62600000 reads so far
2011-05-20 11:51:44,623 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:42990022-63010022
2011-05-20 11:51:49,535 - INFO - Processed 62700000 reads so far
2011-05-20 11:52:02,274 - INFO - Processed 62800000 reads so far
2011-05-20 11:52:14,553 - INFO - Processed 62900000 reads so far
2011-05-20 11:52:26,697 - INFO - Processed 63000000 reads so far
2011-05-20 11:52:39,509 - INFO - Processed 63100000 reads so far
2011-05-20 11:52:52,222 - INFO - Processed 63200000 reads so far
2011-05-20 11:53:04,765 - INFO - Processed 63300000 reads so far
2011-05-20 11:53:17,657 - INFO - Processed 63400000 reads so far
2011-05-20 11:53:30,675 - INFO - Processed 63500000 reads so far
2011-05-20 11:53:42,328 - INFO - Processed 63600000 reads so far
2011-05-20 11:53:55,868 - INFO - Processed 63700000 reads so far
2011-05-20 11:54:08,218 - INFO - Processed 63800000 reads so far
2011-05-20 11:54:09,251 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:2989966-23009966
2011-05-20 11:54:21,763 - INFO - Processed 63900000 reads so far
2011-05-20 11:54:34,411 - INFO - Processed 64000000 reads so far
2011-05-20 11:54:46,446 - INFO - Processed 64100000 reads so far
2011-05-20 11:54:57,987 - INFO - Processed 64200000 reads so far
2011-05-20 11:55:10,093 - INFO - Processed 64300000 reads so far
2011-05-20 11:55:20,932 - INFO - Processed 64400000 reads so far
2011-05-20 11:55:33,353 - INFO - Processed 64500000 reads so far
2011-05-20 11:55:44,468 - INFO - Processed 64600000 reads so far
2011-05-20 11:55:56,322 - INFO - Processed 64700000 reads so far
2011-05-20 11:56:07,388 - INFO - Processed 64800000 reads so far
2011-05-20 11:56:19,049 - INFO - Processed 64900000 reads so far
2011-05-20 11:56:30,835 - INFO - Processed 65000000 reads so far
2011-05-20 11:56:32,173 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:22990023-43010023
2011-05-20 11:56:43,873 - INFO - Processed 65100000 reads so far
2011-05-20 11:56:57,512 - INFO - Processed 65200000 reads so far
2011-05-20 11:57:08,470 - INFO - Processed 65300000 reads so far
2011-05-20 11:57:20,207 - INFO - Processed 65400000 reads so far
2011-05-20 11:57:35,796 - INFO - Processed 65500000 reads so far
2011-05-20 11:57:50,083 - INFO - Processed 65600000 reads so far
2011-05-20 11:58:03,121 - INFO - Processed 65700000 reads so far
2011-05-20 11:58:15,557 - INFO - Processed 65800000 reads so far
2011-05-20 11:58:27,177 - INFO - Processed 65900000 reads so far
2011-05-20 11:58:40,520 - INFO - Processed 66000000 reads so far
2011-05-20 11:58:51,964 - INFO - Processed 66100000 reads so far
2011-05-20 11:59:03,914 - INFO - Processed 66200000 reads so far
2011-05-20 11:59:06,679 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:42990034-63010034
2011-05-20 11:59:15,388 - INFO - Processed 66300000 reads so far
2011-05-20 11:59:27,231 - INFO - Processed 66400000 reads so far
2011-05-20 11:59:40,415 - INFO - Processed 66500000 reads so far
2011-05-20 11:59:52,325 - INFO - Processed 66600000 reads so far
2011-05-20 12:00:03,629 - INFO - Processed 66700000 reads so far
2011-05-20 12:00:19,429 - INFO - Processed 66800000 reads so far
2011-05-20 12:00:31,379 - INFO - Processed 66900000 reads so far
2011-05-20 12:00:43,141 - INFO - Processed 67000000 reads so far
2011-05-20 12:00:55,299 - INFO - Processed 67100000 reads so far
2011-05-20 12:01:08,146 - INFO - Processed 67200000 reads so far
2011-05-20 12:01:20,391 - INFO - Processed 67300000 reads so far
2011-05-20 12:01:33,014 - INFO - Processed 67400000 reads so far
2011-05-20 12:01:37,046 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:62990044-83010044
2011-05-20 12:01:45,145 - INFO - Processed 67500000 reads so far
2011-05-20 12:01:59,390 - INFO - Processed 67600000 reads so far
2011-05-20 12:02:10,418 - INFO - Processed 67700000 reads so far
2011-05-20 12:02:23,340 - INFO - Processed 67800000 reads so far
2011-05-20 12:02:34,518 - INFO - Processed 67900000 reads so far
2011-05-20 12:02:46,319 - INFO - Processed 68000000 reads so far
2011-05-20 12:02:58,441 - INFO - Processed 68100000 reads so far
2011-05-20 12:03:13,226 - INFO - Processed 68200000 reads so far
2011-05-20 12:03:24,809 - INFO - Processed 68300000 reads so far
2011-05-20 12:03:37,522 - INFO - Processed 68400000 reads so far
2011-05-20 12:03:49,829 - INFO - Processed 68500000 reads so far
2011-05-20 12:04:03,527 - INFO - Processed 68600000 reads so far
2011-05-20 12:04:08,738 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:82990050-103010050
2011-05-20 12:04:15,645 - INFO - Processed 68700000 reads so far
2011-05-20 12:04:26,534 - INFO - Processed 68800000 reads so far
2011-05-20 12:04:37,025 - INFO - Processed 68900000 reads so far
2011-05-20 12:04:48,022 - INFO - Processed 69000000 reads so far
2011-05-20 12:04:59,389 - INFO - Processed 69100000 reads so far
2011-05-20 12:05:09,801 - INFO - Processed 69200000 reads so far
2011-05-20 12:05:20,956 - INFO - Processed 69300000 reads so far
2011-05-20 12:05:32,163 - INFO - Processed 69400000 reads so far
2011-05-20 12:05:43,424 - INFO - Processed 69500000 reads so far
2011-05-20 12:05:54,873 - INFO - Processed 69600000 reads so far
2011-05-20 12:06:06,992 - INFO - Processed 69700000 reads so far
2011-05-20 12:06:18,533 - INFO - Processed 69800000 reads so far
2011-05-20 12:06:30,132 - INFO - Processed 69900000 reads so far
2011-05-20 12:06:32,110 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:102990116-123010116
2011-05-20 12:06:41,985 - INFO - Processed 70000000 reads so far
2011-05-20 12:06:53,011 - INFO - Processed 70100000 reads so far
2011-05-20 12:07:03,481 - INFO - Processed 70200000 reads so far
2011-05-20 12:07:16,312 - INFO - Processed 70300000 reads so far
2011-05-20 12:07:31,985 - INFO - Processed 70400000 reads so far
2011-05-20 12:07:44,248 - INFO - Processed 70500000 reads so far
2011-05-20 12:07:57,529 - INFO - Processed 70600000 reads so far
2011-05-20 12:08:08,863 - INFO - Processed 70700000 reads so far
2011-05-20 12:08:20,040 - INFO - Processed 70800000 reads so far
2011-05-20 12:08:32,209 - INFO - Processed 70900000 reads so far
2011-05-20 12:08:43,328 - INFO - Processed 71000000 reads so far
2011-05-20 12:08:54,435 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:122990152-143010152
2011-05-20 12:08:54,585 - INFO - Processed 71100000 reads so far
2011-05-20 12:09:07,589 - INFO - Processed 71200000 reads so far
2011-05-20 12:09:18,773 - INFO - Processed 71300000 reads so far
2011-05-20 12:09:29,889 - INFO - Processed 71400000 reads so far
2011-05-20 12:09:42,308 - INFO - Processed 71500000 reads so far
2011-05-20 12:09:54,599 - INFO - Processed 71600000 reads so far
2011-05-20 12:10:05,757 - INFO - Processed 71700000 reads so far
2011-05-20 12:10:17,634 - INFO - Processed 71800000 reads so far
2011-05-20 12:10:29,223 - INFO - Processed 71900000 reads so far
2011-05-20 12:10:41,424 - INFO - Processed 72000000 reads so far
2011-05-20 12:11:04,015 - INFO - Processed 72100000 reads so far
2011-05-20 12:11:19,039 - INFO - Processed 72200000 reads so far
2011-05-20 12:11:31,588 - INFO - Processed 72300000 reads so far
2011-05-20 12:11:38,515 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:142990191-163010191
2011-05-20 12:11:54,378 - INFO - Processed 72400000 reads so far
2011-05-20 12:12:06,890 - INFO - Processed 72500000 reads so far
2011-05-20 12:12:23,375 - INFO - Processed 72600000 reads so far
2011-05-20 12:12:37,430 - INFO - Processed 72700000 reads so far
2011-05-20 12:12:49,276 - INFO - Processed 72800000 reads so far
2011-05-20 12:13:01,787 - INFO - Processed 72900000 reads so far
2011-05-20 12:13:20,934 - INFO - Processed 73000000 reads so far
2011-05-20 12:13:33,757 - INFO - Processed 73100000 reads so far
2011-05-20 12:13:53,949 - INFO - Processed 73200000 reads so far
2011-05-20 12:14:05,646 - INFO - Processed 73300000 reads so far
2011-05-20 12:14:17,759 - INFO - Processed 73400000 reads so far
2011-05-20 12:14:33,181 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:162990209-183010209
2011-05-20 12:14:33,489 - INFO - Processed 73500000 reads so far
2011-05-20 12:14:47,305 - INFO - Processed 73600000 reads so far
2011-05-20 12:15:07,338 - INFO - Processed 73700000 reads so far
2011-05-20 12:15:21,336 - INFO - Processed 73800000 reads so far
2011-05-20 12:15:33,447 - INFO - Processed 73900000 reads so far
2011-05-20 12:15:48,182 - INFO - Processed 74000000 reads so far
2011-05-20 12:15:59,649 - INFO - Processed 74100000 reads so far
2011-05-20 12:16:12,123 - INFO - Processed 74200000 reads so far
2011-05-20 12:16:23,743 - INFO - Processed 74300000 reads so far
2011-05-20 12:16:36,883 - INFO - Processed 74400000 reads so far
2011-05-20 12:16:50,208 - INFO - Processed 74500000 reads so far
2011-05-20 12:17:00,844 - INFO - Processed 74600000 reads so far
2011-05-20 12:17:12,625 - INFO - Processed 74700000 reads so far
2011-05-20 12:17:17,608 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:182990223-203010223
2011-05-20 12:17:22,971 - INFO - Processed 74800000 reads so far
2011-05-20 12:17:35,077 - INFO - Processed 74900000 reads so far
2011-05-20 12:17:45,831 - INFO - Processed 75000000 reads so far
2011-05-20 12:17:59,328 - INFO - Processed 75100000 reads so far
2011-05-20 12:18:09,406 - INFO - Processed 75200000 reads so far
2011-05-20 12:18:19,896 - INFO - Processed 75300000 reads so far
2011-05-20 12:18:32,603 - INFO - Processed 75400000 reads so far
2011-05-20 12:18:43,521 - INFO - Processed 75500000 reads so far
2011-05-20 12:18:54,236 - INFO - Processed 75600000 reads so far
2011-05-20 12:18:57,285 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1_random:0-20010000
2011-05-20 12:19:04,461 - INFO - Processed 75700000 reads so far
2011-05-20 12:19:12,930 - INFO - Processed 75800000 reads so far
2011-05-20 12:19:13,099 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:2990038-23010038
2011-05-20 12:19:20,624 - INFO - Processed 75900000 reads so far
2011-05-20 12:19:29,826 - INFO - Processed 76000000 reads so far
2011-05-20 12:19:41,401 - INFO - Processed 76100000 reads so far
2011-05-20 12:19:53,651 - INFO - Processed 76200000 reads so far
2011-05-20 12:20:06,213 - INFO - Processed 76300000 reads so far
2011-05-20 12:20:19,935 - INFO - Processed 76400000 reads so far
2011-05-20 12:20:33,939 - INFO - Processed 76500000 reads so far
2011-05-20 12:20:45,850 - INFO - Processed 76600000 reads so far
2011-05-20 12:20:56,283 - INFO - Processed 76700000 reads so far
2011-05-20 12:21:08,768 - INFO - Processed 76800000 reads so far
2011-05-20 12:21:21,630 - INFO - Processed 76900000 reads so far
2011-05-20 12:21:33,815 - INFO - Processed 77000000 reads so far
2011-05-20 12:21:39,962 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:22990057-43010057
2011-05-20 12:21:46,143 - INFO - Processed 77100000 reads so far
2011-05-20 12:21:58,987 - INFO - Processed 77200000 reads so far
2011-05-20 12:22:11,541 - INFO - Processed 77300000 reads so far
2011-05-20 12:22:24,675 - INFO - Processed 77400000 reads so far
2011-05-20 12:22:36,734 - INFO - Processed 77500000 reads so far
2011-05-20 12:22:50,732 - INFO - Processed 77600000 reads so far
2011-05-20 12:23:03,543 - INFO - Processed 77700000 reads so far
2011-05-20 12:23:17,372 - INFO - Processed 77800000 reads so far
2011-05-20 12:23:30,418 - INFO - Processed 77900000 reads so far
2011-05-20 12:23:42,238 - INFO - Processed 78000000 reads so far
2011-05-20 12:23:54,761 - INFO - Processed 78100000 reads so far
2011-05-20 12:24:07,354 - INFO - Processed 78200000 reads so far
2011-05-20 12:24:13,804 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:42990065-63010065
2011-05-20 12:24:18,325 - INFO - Processed 78300000 reads so far
2011-05-20 12:24:28,781 - INFO - Processed 78400000 reads so far
2011-05-20 12:24:40,440 - INFO - Processed 78500000 reads so far
2011-05-20 12:24:52,140 - INFO - Processed 78600000 reads so far
2011-05-20 12:25:03,695 - INFO - Processed 78700000 reads so far
2011-05-20 12:25:14,227 - INFO - Processed 78800000 reads so far
2011-05-20 12:25:27,127 - INFO - Processed 78900000 reads so far
2011-05-20 12:25:39,060 - INFO - Processed 79000000 reads so far
2011-05-20 12:25:50,725 - INFO - Processed 79100000 reads so far
2011-05-20 12:26:02,269 - INFO - Processed 79200000 reads so far
2011-05-20 12:26:13,915 - INFO - Processed 79300000 reads so far
2011-05-20 12:26:25,059 - INFO - Processed 79400000 reads so far
2011-05-20 12:26:29,597 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:62990067-83010067
2011-05-20 12:26:36,663 - INFO - Processed 79500000 reads so far
2011-05-20 12:26:50,001 - INFO - Processed 79600000 reads so far
2011-05-20 12:27:01,884 - INFO - Processed 79700000 reads so far
2011-05-20 12:27:13,694 - INFO - Processed 79800000 reads so far
2011-05-20 12:27:25,304 - INFO - Processed 79900000 reads so far
2011-05-20 12:27:36,980 - INFO - Processed 80000000 reads so far
2011-05-20 12:27:49,100 - INFO - Processed 80100000 reads so far
2011-05-20 12:28:02,427 - INFO - Processed 80200000 reads so far
2011-05-20 12:28:14,308 - INFO - Processed 80300000 reads so far
2011-05-20 12:28:24,129 - INFO - Processed 80400000 reads so far
2011-05-20 12:28:33,479 - INFO - Processed 80500000 reads so far
2011-05-20 12:28:42,959 - INFO - Processed 80600000 reads so far
2011-05-20 12:28:53,381 - INFO - Processed 80700000 reads so far
2011-05-20 12:29:02,964 - INFO - Processed 80800000 reads so far
2011-05-20 12:29:15,319 - INFO - Processed 80900000 reads so far
2011-05-20 12:29:27,196 - INFO - Processed 81000000 reads so far
2011-05-20 12:29:39,240 - INFO - Processed 81100000 reads so far
2011-05-20 12:29:44,894 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:82990092-103010092
2011-05-20 12:29:51,100 - INFO - Processed 81200000 reads so far
2011-05-20 12:30:02,689 - INFO - Processed 81300000 reads so far
2011-05-20 12:30:13,766 - INFO - Processed 81400000 reads so far
2011-05-20 12:30:26,834 - INFO - Processed 81500000 reads so far
2011-05-20 12:30:39,535 - INFO - Processed 81600000 reads so far
2011-05-20 12:30:51,358 - INFO - Processed 81700000 reads so far
2011-05-20 12:31:04,083 - INFO - Processed 81800000 reads so far
2011-05-20 12:31:16,324 - INFO - Processed 81900000 reads so far
2011-05-20 12:31:28,219 - INFO - Processed 82000000 reads so far
2011-05-20 12:31:38,996 - INFO - Processed 82100000 reads so far
2011-05-20 12:31:53,364 - INFO - Processed 82200000 reads so far
2011-05-20 12:32:03,517 - INFO - Processed 82300000 reads so far
2011-05-20 12:32:13,011 - INFO - Processed 82400000 reads so far
2011-05-20 12:32:25,629 - INFO - Processed 82500000 reads so far
2011-05-20 12:32:35,464 - INFO - Processed 82600000 reads so far
2011-05-20 12:32:45,810 - INFO - Processed 82700000 reads so far
2011-05-20 12:32:58,297 - INFO - Processed 82800000 reads so far
2011-05-20 12:33:09,446 - INFO - Processed 82900000 reads so far
2011-05-20 12:33:19,145 - INFO - Processed 83000000 reads so far
2011-05-20 12:33:28,843 - INFO - Processed 83100000 reads so far
2011-05-20 12:33:37,894 - INFO - Processed 83200000 reads so far
2011-05-20 12:33:47,129 - INFO - Processed 83300000 reads so far
2011-05-20 12:33:57,407 - INFO - Processed 83400000 reads so far
2011-05-20 12:34:06,998 - INFO - Processed 83500000 reads so far
2011-05-20 12:34:16,400 - INFO - Processed 83600000 reads so far
2011-05-20 12:34:28,955 - INFO - Processed 83700000 reads so far
2011-05-20 12:34:44,075 - INFO - Processed 83800000 reads so far
2011-05-20 12:34:53,880 - INFO - Processed 83900000 reads so far
2011-05-20 12:35:03,456 - INFO - Processed 84000000 reads so far
2011-05-20 12:35:12,444 - INFO - Processed 84100000 reads so far
2011-05-20 12:35:21,193 - INFO - Processed 84200000 reads so far
2011-05-20 12:35:29,410 - INFO - Processed 84300000 reads so far
2011-05-20 12:35:39,135 - INFO - Processed 84400000 reads so far
2011-05-20 12:35:48,274 - INFO - Processed 84500000 reads so far
2011-05-20 12:35:58,523 - INFO - Processed 84600000 reads so far
2011-05-20 12:36:09,626 - INFO - Processed 84700000 reads so far
2011-05-20 12:36:20,859 - INFO - Processed 84800000 reads so far
2011-05-20 12:36:30,402 - INFO - Processed 84900000 reads so far
2011-05-20 12:36:40,191 - INFO - Processed 85000000 reads so far
2011-05-20 12:36:51,516 - INFO - Processed 85100000 reads so far
2011-05-20 12:37:00,648 - INFO - Processed 85200000 reads so far
2011-05-20 12:37:10,881 - INFO - Processed 85300000 reads so far
2011-05-20 12:37:19,684 - INFO - Processed 85400000 reads so far
2011-05-20 12:37:31,062 - INFO - Processed 85500000 reads so far
2011-05-20 12:37:40,901 - INFO - Processed 85600000 reads so far
2011-05-20 12:37:52,024 - INFO - Processed 85700000 reads so far
2011-05-20 12:38:01,751 - INFO - Processed 85800000 reads so far
2011-05-20 12:38:11,897 - INFO - Processed 85900000 reads so far
2011-05-20 12:38:21,804 - INFO - Processed 86000000 reads so far
2011-05-20 12:38:31,728 - INFO - Processed 86100000 reads so far
2011-05-20 12:38:42,569 - INFO - Processed 86200000 reads so far
2011-05-20 12:38:53,459 - INFO - Processed 86300000 reads so far
2011-05-20 12:39:04,065 - INFO - Processed 86400000 reads so far
2011-05-20 12:39:14,100 - INFO - Processed 86500000 reads so far
2011-05-20 12:39:23,734 - INFO - Processed 86600000 reads so far
2011-05-20 12:39:34,691 - INFO - Processed 86700000 reads so far
2011-05-20 12:39:45,027 - INFO - Processed 86800000 reads so far
2011-05-20 12:39:55,607 - INFO - Processed 86900000 reads so far
2011-05-20 12:40:06,862 - INFO - Processed 87000000 reads so far
2011-05-20 12:40:16,235 - INFO - Processed 87100000 reads so far
2011-05-20 12:40:29,449 - INFO - Processed 87200000 reads so far
2011-05-20 12:40:39,893 - INFO - Processed 87300000 reads so far
2011-05-20 12:40:50,057 - INFO - Processed 87400000 reads so far
2011-05-20 12:41:01,718 - INFO - Processed 87500000 reads so far
2011-05-20 12:41:11,136 - INFO - Processed 87600000 reads so far
2011-05-20 12:41:22,120 - INFO - Processed 87700000 reads so far
2011-05-20 12:41:30,969 - INFO - Processed 87800000 reads so far
2011-05-20 12:41:41,566 - INFO - Processed 87900000 reads so far
2011-05-20 12:41:51,297 - INFO - Processed 88000000 reads so far
2011-05-20 12:42:01,464 - INFO - Processed 88100000 reads so far
2011-05-20 12:42:11,625 - INFO - Processed 88200000 reads so far
2011-05-20 12:42:21,177 - INFO - Processed 88300000 reads so far
2011-05-20 12:42:32,176 - INFO - Processed 88400000 reads so far
2011-05-20 12:42:41,550 - INFO - Processed 88500000 reads so far
2011-05-20 12:42:50,612 - INFO - Processed 88600000 reads so far
2011-05-20 12:43:00,338 - INFO - Processed 88700000 reads so far
2011-05-20 12:43:10,177 - INFO - Processed 88800000 reads so far
2011-05-20 12:43:20,389 - INFO - Processed 88900000 reads so far
2011-05-20 12:43:30,500 - INFO - Processed 89000000 reads so far
2011-05-20 12:43:40,160 - INFO - Processed 89100000 reads so far
2011-05-20 12:43:51,504 - INFO - Processed 89200000 reads so far
2011-05-20 12:44:01,911 - INFO - Processed 89300000 reads so far
2011-05-20 12:44:11,825 - INFO - Processed 89400000 reads so far
2011-05-20 12:44:21,269 - INFO - Processed 89500000 reads so far
2011-05-20 12:44:30,767 - INFO - Processed 89600000 reads so far
2011-05-20 12:44:40,497 - INFO - Processed 89700000 reads so far
2011-05-20 12:44:50,826 - INFO - Processed 89800000 reads so far
2011-05-20 12:45:00,575 - INFO - Processed 89900000 reads so far
2011-05-20 12:45:09,841 - INFO - Processed 90000000 reads so far
2011-05-20 12:45:20,257 - INFO - Processed 90100000 reads so far
2011-05-20 12:45:27,672 - INFO - Processed 90200000 reads so far
2011-05-20 12:45:36,384 - INFO - Processed 90300000 reads so far
2011-05-20 12:45:45,721 - INFO - Processed 90400000 reads so far
2011-05-20 12:45:55,887 - INFO - Processed 90500000 reads so far
2011-05-20 12:46:04,745 - INFO - Processed 90600000 reads so far
2011-05-20 12:46:14,721 - INFO - Processed 90700000 reads so far
2011-05-20 12:46:24,296 - INFO - Processed 90800000 reads so far
2011-05-20 12:46:33,885 - INFO - Processed 90900000 reads so far
2011-05-20 12:46:42,420 - INFO - Processed 91000000 reads so far
2011-05-20 12:46:51,033 - INFO - Processed 91100000 reads so far
2011-05-20 12:47:00,904 - INFO - Processed 91200000 reads so far
2011-05-20 12:47:07,951 - INFO - Processed 91300000 reads so far
2011-05-20 12:47:15,090 - INFO - Processed 91400000 reads so far
2011-05-20 12:47:23,139 - INFO - Processed 91500000 reads so far
2011-05-20 12:47:30,801 - INFO - Processed 91600000 reads so far
2011-05-20 12:47:38,781 - INFO - Processed 91700000 reads so far
2011-05-20 12:47:46,059 - INFO - Processed 91800000 reads so far
2011-05-20 12:47:52,601 - INFO - Processed 91900000 reads so far
2011-05-20 12:48:00,660 - INFO - Processed 92000000 reads so far
2011-05-20 12:48:08,386 - INFO - Processed 92100000 reads so far
2011-05-20 12:48:18,016 - INFO - Processed 92200000 reads so far
2011-05-20 12:48:28,782 - INFO - Processed 92300000 reads so far
2011-05-20 12:48:37,645 - INFO - Processed 92400000 reads so far
2011-05-20 12:48:46,515 - INFO - Processed 92500000 reads so far
2011-05-20 12:48:55,292 - INFO - Processed 92600000 reads so far
2011-05-20 12:49:04,375 - INFO - Processed 92700000 reads so far
2011-05-20 12:49:13,834 - INFO - Processed 92800000 reads so far
2011-05-20 12:49:23,249 - INFO - Processed 92900000 reads so far
2011-05-20 12:49:34,143 - INFO - Processed 93000000 reads so far
2011-05-20 12:49:45,337 - INFO - Processed 93100000 reads so far
2011-05-20 12:49:54,294 - INFO - Processed 93200000 reads so far
2011-05-20 12:50:03,318 - INFO - Processed 93300000 reads so far
2011-05-20 12:50:13,561 - INFO - Processed 93400000 reads so far
2011-05-20 12:50:23,748 - INFO - Processed 93500000 reads so far
2011-05-20 12:50:33,594 - INFO - Processed 93600000 reads so far
2011-05-20 12:50:42,354 - INFO - Processed 93700000 reads so far
2011-05-20 12:50:51,087 - INFO - Processed 93800000 reads so far
2011-05-20 12:51:02,780 - INFO - Processed 93900000 reads so far
2011-05-20 12:51:12,181 - INFO - Processed 94000000 reads so far
2011-05-20 12:51:21,709 - INFO - Processed 94100000 reads so far
2011-05-20 12:51:31,351 - INFO - Processed 94200000 reads so far
2011-05-20 12:51:40,580 - INFO - Processed 94300000 reads so far
2011-05-20 12:51:49,829 - INFO - Processed 94400000 reads so far
2011-05-20 12:51:58,766 - INFO - Processed 94500000 reads so far
2011-05-20 12:52:07,316 - INFO - Processed 94600000 reads so far
2011-05-20 12:52:14,815 - INFO - Processed 94700000 reads so far
2011-05-20 12:52:22,097 - INFO - Processed 94800000 reads so far
2011-05-20 12:52:22,567 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:102990096-123010096
2011-05-20 12:52:30,479 - INFO - Processed 94900000 reads so far
2011-05-20 12:52:38,123 - INFO - Processed 95000000 reads so far
2011-05-20 12:52:45,338 - INFO - Processed 95100000 reads so far
2011-05-20 12:52:52,323 - INFO - Processed 95200000 reads so far
2011-05-20 12:53:00,620 - INFO - Processed 95300000 reads so far
2011-05-20 12:53:09,406 - INFO - Processed 95400000 reads so far
2011-05-20 12:53:20,035 - INFO - Processed 95500000 reads so far
2011-05-20 12:53:26,916 - INFO - Processed 95600000 reads so far
2011-05-20 12:53:33,902 - INFO - Processed 95700000 reads so far
2011-05-20 12:53:44,951 - INFO - Processed 95800000 reads so far
2011-05-20 12:53:56,098 - INFO - Processed 95900000 reads so far
2011-05-20 12:54:07,184 - INFO - Processed 96000000 reads so far
2011-05-20 12:54:07,812 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:122990126-143010126
2011-05-20 12:54:17,165 - INFO - Processed 96100000 reads so far
2011-05-20 12:54:28,232 - INFO - Processed 96200000 reads so far
2011-05-20 12:54:39,325 - INFO - Processed 96300000 reads so far
2011-05-20 12:54:50,018 - INFO - Processed 96400000 reads so far
2011-05-20 12:55:00,889 - INFO - Processed 96500000 reads so far
2011-05-20 12:55:11,739 - INFO - Processed 96600000 reads so far
2011-05-20 12:55:22,681 - INFO - Processed 96700000 reads so far
2011-05-20 12:55:33,368 - INFO - Processed 96800000 reads so far
2011-05-20 12:55:44,149 - INFO - Processed 96900000 reads so far
2011-05-20 12:55:54,301 - INFO - Processed 97000000 reads so far
2011-05-20 12:56:04,712 - INFO - Processed 97100000 reads so far
2011-05-20 12:56:14,506 - INFO - Processed 97200000 reads so far
2011-05-20 12:56:19,171 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:142990130-163010130
2011-05-20 12:56:24,458 - INFO - Processed 97300000 reads so far
2011-05-20 12:56:34,129 - INFO - Processed 97400000 reads so far
2011-05-20 12:56:44,490 - INFO - Processed 97500000 reads so far
2011-05-20 12:56:55,043 - INFO - Processed 97600000 reads so far
2011-05-20 12:57:04,887 - INFO - Processed 97700000 reads so far
2011-05-20 12:57:13,792 - INFO - Processed 97800000 reads so far
2011-05-20 12:57:23,102 - INFO - Processed 97900000 reads so far
2011-05-20 12:57:33,354 - INFO - Processed 98000000 reads so far
2011-05-20 12:57:43,958 - INFO - Processed 98100000 reads so far
2011-05-20 12:57:53,735 - INFO - Processed 98200000 reads so far
2011-05-20 12:58:03,935 - INFO - Processed 98300000 reads so far
2011-05-20 12:58:13,656 - INFO - Processed 98400000 reads so far
2011-05-20 12:58:34,884 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:162990140-183010140
2011-05-20 12:58:35,475 - INFO - Processed 98500000 reads so far
2011-05-20 12:58:45,022 - INFO - Processed 98600000 reads so far
2011-05-20 12:58:53,685 - INFO - Processed 98700000 reads so far
2011-05-20 12:59:01,591 - INFO - Processed 98800000 reads so far
2011-05-20 12:59:09,854 - INFO - Processed 98900000 reads so far
2011-05-20 12:59:17,489 - INFO - Processed 99000000 reads so far
2011-05-20 12:59:26,729 - INFO - Processed 99100000 reads so far
2011-05-20 12:59:34,360 - INFO - Processed 99200000 reads so far
2011-05-20 12:59:42,023 - INFO - Processed 99300000 reads so far
2011-05-20 12:59:49,008 - INFO - Processed 99400000 reads so far
2011-05-20 12:59:58,507 - INFO - Processed 99500000 reads so far
2011-05-20 13:00:08,663 - INFO - Processed 99600000 reads so far
2011-05-20 13:00:15,582 - INFO - Processed 99700000 reads so far
2011-05-20 13:00:16,548 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:2989996-23009996
2011-05-20 13:00:22,728 - INFO - Processed 99800000 reads so far
2011-05-20 13:00:31,480 - INFO - Processed 99900000 reads so far
2011-05-20 13:00:41,946 - INFO - Processed 100000000 reads so far
2011-05-20 13:00:49,499 - INFO - Processed 100100000 reads so far
2011-05-20 13:00:57,421 - INFO - Processed 100200000 reads so far
2011-05-20 13:01:04,366 - INFO - Processed 100300000 reads so far
2011-05-20 13:01:12,836 - INFO - Processed 100400000 reads so far
2011-05-20 13:01:22,946 - INFO - Processed 100500000 reads so far
2011-05-20 13:01:31,846 - INFO - Processed 100600000 reads so far
2011-05-20 13:01:41,710 - INFO - Processed 100700000 reads so far
2011-05-20 13:01:49,244 - INFO - Processed 100800000 reads so far
2011-05-20 13:01:59,809 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:22990007-43010007
2011-05-20 13:01:59,993 - INFO - Processed 100900000 reads so far
2011-05-20 13:02:08,152 - INFO - Processed 101000000 reads so far
2011-05-20 13:02:18,642 - INFO - Processed 101100000 reads so far
2011-05-20 13:02:27,852 - INFO - Processed 101200000 reads so far
2011-05-20 13:02:36,213 - INFO - Processed 101300000 reads so far
2011-05-20 13:02:45,117 - INFO - Processed 101400000 reads so far
2011-05-20 13:02:53,719 - INFO - Processed 101500000 reads so far
2011-05-20 13:03:04,131 - INFO - Processed 101600000 reads so far
2011-05-20 13:03:14,516 - INFO - Processed 101700000 reads so far
2011-05-20 13:03:23,147 - INFO - Processed 101800000 reads so far
2011-05-20 13:03:33,801 - INFO - Processed 101900000 reads so far
2011-05-20 13:03:43,852 - INFO - Processed 102000000 reads so far
2011-05-20 13:03:52,236 - INFO - Processed 102100000 reads so far
2011-05-20 13:03:54,584 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:42990010-63010010
2011-05-20 13:04:02,467 - INFO - Processed 102200000 reads so far
2011-05-20 13:04:11,339 - INFO - Processed 102300000 reads so far
2011-05-20 13:04:21,480 - INFO - Processed 102400000 reads so far
2011-05-20 13:04:32,175 - INFO - Processed 102500000 reads so far
2011-05-20 13:04:44,767 - INFO - Processed 102600000 reads so far
2011-05-20 13:04:55,603 - INFO - Processed 102700000 reads so far
2011-05-20 13:05:04,947 - INFO - Processed 102800000 reads so far
2011-05-20 13:05:14,584 - INFO - Processed 102900000 reads so far
2011-05-20 13:05:23,015 - INFO - Processed 103000000 reads so far
2011-05-20 13:05:32,631 - INFO - Processed 103100000 reads so far
2011-05-20 13:05:42,437 - INFO - Processed 103200000 reads so far
2011-05-20 13:05:51,675 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:62990019-83010019
2011-05-20 13:05:52,262 - INFO - Processed 103300000 reads so far
2011-05-20 13:06:00,673 - INFO - Processed 103400000 reads so far
2011-05-20 13:06:09,845 - INFO - Processed 103500000 reads so far
2011-05-20 13:06:17,794 - INFO - Processed 103600000 reads so far
2011-05-20 13:06:25,398 - INFO - Processed 103700000 reads so far
2011-05-20 13:06:34,755 - INFO - Processed 103800000 reads so far
2011-05-20 13:06:42,788 - INFO - Processed 103900000 reads so far
2011-05-20 13:06:51,689 - INFO - Processed 104000000 reads so far
2011-05-20 13:07:02,045 - INFO - Processed 104100000 reads so far
2011-05-20 13:07:10,371 - INFO - Processed 104200000 reads so far
2011-05-20 13:07:18,834 - INFO - Processed 104300000 reads so far
2011-05-20 13:07:28,154 - INFO - Processed 104400000 reads so far
2011-05-20 13:07:35,297 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:82990022-103010022
2011-05-20 13:07:37,775 - INFO - Processed 104500000 reads so far
2011-05-20 13:07:48,319 - INFO - Processed 104600000 reads so far
2011-05-20 13:07:56,878 - INFO - Processed 104700000 reads so far
2011-05-20 13:08:06,145 - INFO - Processed 104800000 reads so far
2011-05-20 13:08:18,528 - INFO - Processed 104900000 reads so far
2011-05-20 13:08:29,291 - INFO - Processed 105000000 reads so far
2011-05-20 13:08:37,464 - INFO - Processed 105100000 reads so far
2011-05-20 13:08:45,616 - INFO - Processed 105200000 reads so far
2011-05-20 13:08:54,638 - INFO - Processed 105300000 reads so far
2011-05-20 13:09:05,737 - INFO - Processed 105400000 reads so far
2011-05-20 13:09:15,211 - INFO - Processed 105500000 reads so far
2011-05-20 13:09:24,877 - INFO - Processed 105600000 reads so far
2011-05-20 13:09:47,914 - INFO - Processed 105700000 reads so far
2011-05-20 13:09:49,746 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:102990055-123010055
2011-05-20 13:09:58,759 - INFO - Processed 105800000 reads so far
2011-05-20 13:10:09,009 - INFO - Processed 105900000 reads so far
2011-05-20 13:10:20,252 - INFO - Processed 106000000 reads so far
2011-05-20 13:10:39,023 - INFO - Processed 106100000 reads so far
2011-05-20 13:10:49,676 - INFO - Processed 106200000 reads so far
2011-05-20 13:11:16,308 - INFO - Processed 106300000 reads so far
2011-05-20 13:11:28,275 - INFO - Processed 106400000 reads so far
2011-05-20 13:11:47,925 - INFO - Processed 106500000 reads so far
2011-05-20 13:12:02,079 - INFO - Processed 106600000 reads so far
2011-05-20 13:12:12,010 - INFO - Processed 106700000 reads so far
2011-05-20 13:12:22,268 - INFO - Processed 106800000 reads so far
2011-05-20 13:12:31,197 - INFO - Processed 106900000 reads so far
2011-05-20 13:12:31,569 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:122990090-143010090
2011-05-20 13:12:53,086 - INFO - Processed 107000000 reads so far
2011-05-20 13:13:04,143 - INFO - Processed 107100000 reads so far
2011-05-20 13:13:21,825 - INFO - Processed 107200000 reads so far
2011-05-20 13:13:38,884 - INFO - Processed 107300000 reads so far
2011-05-20 13:13:53,667 - INFO - Processed 107400000 reads so far
2011-05-20 13:14:15,143 - INFO - Processed 107500000 reads so far
2011-05-20 13:14:26,768 - INFO - Processed 107600000 reads so far
2011-05-20 13:14:50,614 - INFO - Processed 107700000 reads so far
2011-05-20 13:15:01,496 - INFO - Processed 107800000 reads so far
2011-05-20 13:15:20,666 - INFO - Processed 107900000 reads so far
2011-05-20 13:15:33,732 - INFO - Processed 108000000 reads so far
2011-05-20 13:15:46,859 - INFO - Processed 108100000 reads so far
2011-05-20 13:15:48,158 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:142990137-163010137
2011-05-20 13:15:59,451 - INFO - Processed 108200000 reads so far
2011-05-20 13:16:10,778 - INFO - Processed 108300000 reads so far
2011-05-20 13:16:21,834 - INFO - Processed 108400000 reads so far
2011-05-20 13:16:34,895 - INFO - Processed 108500000 reads so far
2011-05-20 13:16:46,414 - INFO - Processed 108600000 reads so far
2011-05-20 13:16:57,249 - INFO - Processed 108700000 reads so far
2011-05-20 13:17:09,328 - INFO - Processed 108800000 reads so far
2011-05-20 13:17:20,256 - INFO - Processed 108900000 reads so far
2011-05-20 13:17:34,280 - INFO - Processed 109000000 reads so far
2011-05-20 13:17:45,690 - INFO - Processed 109100000 reads so far
2011-05-20 13:17:50,792 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3_random:0-20010004
2011-05-20 13:17:50,944 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:2990000-23010000
2011-05-20 13:17:55,291 - INFO - Processed 109200000 reads so far
2011-05-20 13:18:06,352 - INFO - Processed 109300000 reads so far
2011-05-20 13:18:17,126 - INFO - Processed 109400000 reads so far
2011-05-20 13:18:28,179 - INFO - Processed 109500000 reads so far
2011-05-20 13:18:39,519 - INFO - Processed 109600000 reads so far
2011-05-20 13:18:51,972 - INFO - Processed 109700000 reads so far
2011-05-20 13:19:03,030 - INFO - Processed 109800000 reads so far
2011-05-20 13:19:15,702 - INFO - Processed 109900000 reads so far
2011-05-20 13:19:27,442 - INFO - Processed 110000000 reads so far
2011-05-20 13:19:38,240 - INFO - Processed 110100000 reads so far
2011-05-20 13:19:49,989 - INFO - Processed 110200000 reads so far
2011-05-20 13:20:02,026 - INFO - Processed 110300000 reads so far
2011-05-20 13:20:10,964 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:22990006-43010006
2011-05-20 13:20:12,128 - INFO - Processed 110400000 reads so far
2011-05-20 13:20:23,739 - INFO - Processed 110500000 reads so far
2011-05-20 13:20:33,112 - INFO - Processed 110600000 reads so far
2011-05-20 13:20:42,929 - INFO - Processed 110700000 reads so far
2011-05-20 13:20:53,326 - INFO - Processed 110800000 reads so far
2011-05-20 13:21:03,778 - INFO - Processed 110900000 reads so far
2011-05-20 13:21:13,872 - INFO - Processed 111000000 reads so far
2011-05-20 13:21:24,036 - INFO - Processed 111100000 reads so far
2011-05-20 13:21:34,233 - INFO - Processed 111200000 reads so far
2011-05-20 13:21:43,435 - INFO - Processed 111300000 reads so far
2011-05-20 13:21:53,036 - INFO - Processed 111400000 reads so far
2011-05-20 13:22:01,501 - INFO - Processed 111500000 reads so far
2011-05-20 13:22:08,460 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:42990017-63010017
2011-05-20 13:22:12,023 - INFO - Processed 111600000 reads so far
2011-05-20 13:22:21,066 - INFO - Processed 111700000 reads so far
2011-05-20 13:22:32,906 - INFO - Processed 111800000 reads so far
2011-05-20 13:22:42,514 - INFO - Processed 111900000 reads so far
2011-05-20 13:22:56,864 - INFO - Processed 112000000 reads so far
2011-05-20 13:23:08,186 - INFO - Processed 112100000 reads so far
2011-05-20 13:23:18,703 - INFO - Processed 112200000 reads so far
2011-05-20 13:23:29,226 - INFO - Processed 112300000 reads so far
2011-05-20 13:23:39,787 - INFO - Processed 112400000 reads so far
2011-05-20 13:23:49,408 - INFO - Processed 112500000 reads so far
2011-05-20 13:23:59,163 - INFO - Processed 112600000 reads so far
2011-05-20 13:24:10,351 - INFO - Processed 112700000 reads so far
2011-05-20 13:24:18,931 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:62990029-83010029
2011-05-20 13:24:22,458 - INFO - Processed 112800000 reads so far
2011-05-20 13:24:32,525 - INFO - Processed 112900000 reads so far
2011-05-20 13:24:41,435 - INFO - Processed 113000000 reads so far
2011-05-20 13:24:50,929 - INFO - Processed 113100000 reads so far
2011-05-20 13:24:59,501 - INFO - Processed 113200000 reads so far
2011-05-20 13:25:10,841 - INFO - Processed 113300000 reads so far
2011-05-20 13:25:22,030 - INFO - Processed 113400000 reads so far
2011-05-20 13:25:34,222 - INFO - Processed 113500000 reads so far
2011-05-20 13:25:44,716 - INFO - Processed 113600000 reads so far
2011-05-20 13:25:55,888 - INFO - Processed 113700000 reads so far
2011-05-20 13:26:07,357 - INFO - Processed 113800000 reads so far
2011-05-20 13:26:18,476 - INFO - Processed 113900000 reads so far
2011-05-20 13:26:24,595 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:82990049-103010049
2011-05-20 13:26:28,074 - INFO - Processed 114000000 reads so far
2011-05-20 13:26:39,370 - INFO - Processed 114100000 reads so far
2011-05-20 13:26:51,226 - INFO - Processed 114200000 reads so far
2011-05-20 13:27:02,342 - INFO - Processed 114300000 reads so far
2011-05-20 13:27:14,797 - INFO - Processed 114400000 reads so far
2011-05-20 13:27:25,728 - INFO - Processed 114500000 reads so far
2011-05-20 13:27:35,850 - INFO - Processed 114600000 reads so far
2011-05-20 13:27:47,967 - INFO - Processed 114700000 reads so far
2011-05-20 13:27:58,497 - INFO - Processed 114800000 reads so far
2011-05-20 13:28:06,619 - INFO - Processed 114900000 reads so far
2011-05-20 13:28:17,333 - INFO - Processed 115000000 reads so far
2011-05-20 13:28:25,644 - INFO - Processed 115100000 reads so far
2011-05-20 13:28:36,427 - INFO - Processed 115200000 reads so far
2011-05-20 13:28:36,596 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:102990052-123010052
2011-05-20 13:28:47,637 - INFO - Processed 115300000 reads so far
2011-05-20 13:28:59,121 - INFO - Processed 115400000 reads so far
2011-05-20 13:29:08,294 - INFO - Processed 115500000 reads so far
2011-05-20 13:29:19,173 - INFO - Processed 115600000 reads so far
2011-05-20 13:29:28,345 - INFO - Processed 115700000 reads so far
2011-05-20 13:29:39,275 - INFO - Processed 115800000 reads so far
2011-05-20 13:29:49,832 - INFO - Processed 115900000 reads so far
2011-05-20 13:29:58,495 - INFO - Processed 116000000 reads so far
2011-05-20 13:30:06,826 - INFO - Processed 116100000 reads so far
2011-05-20 13:30:15,054 - INFO - Processed 116200000 reads so far
2011-05-20 13:30:23,139 - INFO - Processed 116300000 reads so far
2011-05-20 13:30:25,974 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:122990082-143010082
2011-05-20 13:30:32,249 - INFO - Processed 116400000 reads so far
2011-05-20 13:30:41,624 - INFO - Processed 116500000 reads so far
2011-05-20 13:30:49,893 - INFO - Processed 116600000 reads so far
2011-05-20 13:31:00,078 - INFO - Processed 116700000 reads so far
2011-05-20 13:31:10,502 - INFO - Processed 116800000 reads so far
2011-05-20 13:31:18,404 - INFO - Processed 116900000 reads so far
2011-05-20 13:31:27,196 - INFO - Processed 117000000 reads so far
2011-05-20 13:31:36,848 - INFO - Processed 117100000 reads so far
2011-05-20 13:31:46,317 - INFO - Processed 117200000 reads so far
2011-05-20 13:31:54,946 - INFO - Processed 117300000 reads so far
2011-05-20 13:32:05,354 - INFO - Processed 117400000 reads so far
2011-05-20 13:32:13,906 - INFO - Processed 117500000 reads so far
2011-05-20 13:32:17,638 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:142990122-163010122
2011-05-20 13:32:22,180 - INFO - Processed 117600000 reads so far
2011-05-20 13:32:31,751 - INFO - Processed 117700000 reads so far
2011-05-20 13:32:39,870 - INFO - Processed 117800000 reads so far
2011-05-20 13:32:47,719 - INFO - Processed 117900000 reads so far
2011-05-20 13:32:56,423 - INFO - Processed 118000000 reads so far
2011-05-20 13:33:04,876 - INFO - Processed 118100000 reads so far
2011-05-20 13:33:13,419 - INFO - Processed 118200000 reads so far
2011-05-20 13:33:21,855 - INFO - Processed 118300000 reads so far
2011-05-20 13:33:30,105 - INFO - Processed 118400000 reads so far
2011-05-20 13:33:31,311 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4_random:0-20010048
2011-05-20 13:33:32,480 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:2990045-23010045
2011-05-20 13:33:38,707 - INFO - Processed 118500000 reads so far
2011-05-20 13:33:46,852 - INFO - Processed 118600000 reads so far
2011-05-20 13:33:56,059 - INFO - Processed 118700000 reads so far
2011-05-20 13:34:06,063 - INFO - Processed 118800000 reads so far
2011-05-20 13:34:16,203 - INFO - Processed 118900000 reads so far
2011-05-20 13:34:24,285 - INFO - Processed 119000000 reads so far
2011-05-20 13:34:34,167 - INFO - Processed 119100000 reads so far
2011-05-20 13:34:45,340 - INFO - Processed 119200000 reads so far
2011-05-20 13:34:56,176 - INFO - Processed 119300000 reads so far
2011-05-20 13:35:07,425 - INFO - Processed 119400000 reads so far
2011-05-20 13:35:17,868 - INFO - Processed 119500000 reads so far
2011-05-20 13:35:28,210 - INFO - Processed 119600000 reads so far
2011-05-20 13:35:34,850 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:22990503-43010503
2011-05-20 13:35:37,038 - INFO - Processed 119700000 reads so far
2011-05-20 13:35:47,851 - INFO - Processed 119800000 reads so far
2011-05-20 13:35:58,286 - INFO - Processed 119900000 reads so far
2011-05-20 13:36:07,991 - INFO - Processed 120000000 reads so far
2011-05-20 13:36:19,467 - INFO - Processed 120100000 reads so far
2011-05-20 13:36:30,285 - INFO - Processed 120200000 reads so far
2011-05-20 13:36:40,475 - INFO - Processed 120300000 reads so far
2011-05-20 13:36:55,182 - INFO - Processed 120400000 reads so far
2011-05-20 13:37:07,262 - INFO - Processed 120500000 reads so far
2011-05-20 13:37:18,394 - INFO - Processed 120600000 reads so far
2011-05-20 13:37:30,313 - INFO - Processed 120700000 reads so far
2011-05-20 13:37:41,850 - INFO - Processed 120800000 reads so far
2011-05-20 13:37:51,215 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:42991706-63011706
2011-05-20 13:37:52,983 - INFO - Processed 120900000 reads so far
2011-05-20 13:38:05,335 - INFO - Processed 121000000 reads so far
2011-05-20 13:38:16,502 - INFO - Processed 121100000 reads so far
2011-05-20 13:38:27,642 - INFO - Processed 121200000 reads so far
2011-05-20 13:38:38,776 - INFO - Processed 121300000 reads so far
2011-05-20 13:38:49,784 - INFO - Processed 121400000 reads so far
2011-05-20 13:39:02,228 - INFO - Processed 121500000 reads so far
2011-05-20 13:39:13,535 - INFO - Processed 121600000 reads so far
2011-05-20 13:39:22,098 - INFO - Processed 121700000 reads so far
2011-05-20 13:39:30,114 - INFO - Processed 121800000 reads so far
2011-05-20 13:39:38,235 - INFO - Processed 121900000 reads so far
2011-05-20 13:39:49,281 - INFO - Processed 122000000 reads so far
2011-05-20 13:39:54,572 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:62991761-83011761
2011-05-20 13:39:59,924 - INFO - Processed 122100000 reads so far
2011-05-20 13:40:11,229 - INFO - Processed 122200000 reads so far
2011-05-20 13:40:23,343 - INFO - Processed 122300000 reads so far
2011-05-20 13:40:33,704 - INFO - Processed 122400000 reads so far
2011-05-20 13:40:42,559 - INFO - Processed 122500000 reads so far
2011-05-20 13:40:52,916 - INFO - Processed 122600000 reads so far
2011-05-20 13:41:00,748 - INFO - Processed 122700000 reads so far
2011-05-20 13:41:12,534 - INFO - Processed 122800000 reads so far
2011-05-20 13:41:23,674 - INFO - Processed 122900000 reads so far
2011-05-20 13:41:34,760 - INFO - Processed 123000000 reads so far
2011-05-20 13:41:46,849 - INFO - Processed 123100000 reads so far
2011-05-20 13:41:57,915 - INFO - Processed 123200000 reads so far
2011-05-20 13:42:03,697 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:82991774-103011774
2011-05-20 13:42:09,982 - INFO - Processed 123300000 reads so far
2011-05-20 13:42:22,424 - INFO - Processed 123400000 reads so far
2011-05-20 13:42:33,007 - INFO - Processed 123500000 reads so far
2011-05-20 13:42:43,512 - INFO - Processed 123600000 reads so far
2011-05-20 13:42:53,418 - INFO - Processed 123700000 reads so far
2011-05-20 13:43:03,838 - INFO - Processed 123800000 reads so far
2011-05-20 13:43:12,079 - INFO - Processed 123900000 reads so far
2011-05-20 13:43:22,999 - INFO - Processed 124000000 reads so far
2011-05-20 13:43:33,211 - INFO - Processed 124100000 reads so far
2011-05-20 13:43:44,665 - INFO - Processed 124200000 reads so far
2011-05-20 13:43:54,687 - INFO - Processed 124300000 reads so far
2011-05-20 13:44:06,112 - INFO - Processed 124400000 reads so far
2011-05-20 13:44:07,540 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:102991824-123011824
2011-05-20 13:44:16,907 - INFO - Processed 124500000 reads so far
2011-05-20 13:44:26,445 - INFO - Processed 124600000 reads so far
2011-05-20 13:44:36,622 - INFO - Processed 124700000 reads so far
2011-05-20 13:44:47,079 - INFO - Processed 124800000 reads so far
2011-05-20 13:44:55,142 - INFO - Processed 124900000 reads so far
2011-05-20 13:45:04,330 - INFO - Processed 125000000 reads so far
2011-05-20 13:45:15,257 - INFO - Processed 125100000 reads so far
2011-05-20 13:45:24,197 - INFO - Processed 125200000 reads so far
2011-05-20 13:45:34,591 - INFO - Processed 125300000 reads so far
2011-05-20 13:45:47,249 - INFO - Processed 125400000 reads so far
2011-05-20 13:45:57,236 - INFO - Processed 125500000 reads so far
2011-05-20 13:46:05,465 - INFO - Processed 125600000 reads so far
2011-05-20 13:46:14,870 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:122991840-143011840
2011-05-20 13:46:17,806 - INFO - Processed 125700000 reads so far
2011-05-20 13:46:28,098 - INFO - Processed 125800000 reads so far
2011-05-20 13:46:38,027 - INFO - Processed 125900000 reads so far
2011-05-20 13:46:48,114 - INFO - Processed 126000000 reads so far
2011-05-20 13:46:54,786 - INFO - Processed 126100000 reads so far
2011-05-20 13:47:03,749 - INFO - Processed 126200000 reads so far
2011-05-20 13:47:12,179 - INFO - Processed 126300000 reads so far
2011-05-20 13:47:20,222 - INFO - Processed 126400000 reads so far
2011-05-20 13:47:28,828 - INFO - Processed 126500000 reads so far
2011-05-20 13:47:37,411 - INFO - Processed 126600000 reads so far
2011-05-20 13:47:47,930 - INFO - Processed 126700000 reads so far
2011-05-20 13:47:58,998 - INFO - Processed 126800000 reads so far
2011-05-20 13:48:09,261 - INFO - Processed 126900000 reads so far
2011-05-20 13:48:09,613 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:142991973-163011973
2011-05-20 13:48:17,879 - INFO - Processed 127000000 reads so far
2011-05-20 13:48:26,166 - INFO - Processed 127100000 reads so far
2011-05-20 13:48:34,420 - INFO - Processed 127200000 reads so far
2011-05-20 13:48:42,856 - INFO - Processed 127300000 reads so far
2011-05-20 13:48:51,055 - INFO - Processed 127400000 reads so far
2011-05-20 13:48:57,958 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5_random:0-20010017
2011-05-20 13:48:58,389 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:2989999-23009999
2011-05-20 13:48:58,973 - INFO - Processed 127500000 reads so far
2011-05-20 13:49:07,404 - INFO - Processed 127600000 reads so far
2011-05-20 13:49:15,352 - INFO - Processed 127700000 reads so far
2011-05-20 13:49:23,573 - INFO - Processed 127800000 reads so far
2011-05-20 13:49:31,990 - INFO - Processed 127900000 reads so far
2011-05-20 13:49:40,211 - INFO - Processed 128000000 reads so far
2011-05-20 13:49:48,829 - INFO - Processed 128100000 reads so far
2011-05-20 13:49:56,978 - INFO - Processed 128200000 reads so far
2011-05-20 13:50:04,624 - INFO - Processed 128300000 reads so far
2011-05-20 13:50:13,274 - INFO - Processed 128400000 reads so far
2011-05-20 13:50:21,311 - INFO - Processed 128500000 reads so far
2011-05-20 13:50:29,425 - INFO - Processed 128600000 reads so far
2011-05-20 13:50:36,299 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:22990007-43010007
2011-05-20 13:50:37,748 - INFO - Processed 128700000 reads so far
2011-05-20 13:50:45,251 - INFO - Processed 128800000 reads so far
2011-05-20 13:50:53,445 - INFO - Processed 128900000 reads so far
2011-05-20 13:51:01,316 - INFO - Processed 129000000 reads so far
2011-05-20 13:51:09,140 - INFO - Processed 129100000 reads so far
2011-05-20 13:51:17,490 - INFO - Processed 129200000 reads so far
2011-05-20 13:51:25,428 - INFO - Processed 129300000 reads so far
2011-05-20 13:51:33,416 - INFO - Processed 129400000 reads so far
2011-05-20 13:51:41,004 - INFO - Processed 129500000 reads so far
2011-05-20 13:51:49,060 - INFO - Processed 129600000 reads so far
2011-05-20 13:51:58,276 - INFO - Processed 129700000 reads so far
2011-05-20 13:52:06,969 - INFO - Processed 129800000 reads so far
2011-05-20 13:52:15,516 - INFO - Processed 129900000 reads so far
2011-05-20 13:52:15,915 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:42990031-63010031
2011-05-20 13:52:23,384 - INFO - Processed 130000000 reads so far
2011-05-20 13:52:32,148 - INFO - Processed 130100000 reads so far
2011-05-20 13:52:39,565 - INFO - Processed 130200000 reads so far
2011-05-20 13:52:49,600 - INFO - Processed 130300000 reads so far
2011-05-20 13:52:57,545 - INFO - Processed 130400000 reads so far
2011-05-20 13:53:09,280 - INFO - Processed 130500000 reads so far
2011-05-20 13:53:17,319 - INFO - Processed 130600000 reads so far
2011-05-20 13:53:25,408 - INFO - Processed 130700000 reads so far
2011-05-20 13:53:35,132 - INFO - Processed 130800000 reads so far
2011-05-20 13:53:43,064 - INFO - Processed 130900000 reads so far
2011-05-20 13:53:52,854 - INFO - Processed 131000000 reads so far
2011-05-20 13:54:01,059 - INFO - Processed 131100000 reads so far
2011-05-20 13:54:04,498 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:62990039-83010039
2011-05-20 13:54:09,080 - INFO - Processed 131200000 reads so far
2011-05-20 13:54:17,007 - INFO - Processed 131300000 reads so far
2011-05-20 13:54:25,270 - INFO - Processed 131400000 reads so far
2011-05-20 13:54:33,254 - INFO - Processed 131500000 reads so far
2011-05-20 13:54:41,867 - INFO - Processed 131600000 reads so far
2011-05-20 13:54:50,314 - INFO - Processed 131700000 reads so far
2011-05-20 13:54:57,989 - INFO - Processed 131800000 reads so far
2011-05-20 13:55:08,301 - INFO - Processed 131900000 reads so far
2011-05-20 13:55:16,828 - INFO - Processed 132000000 reads so far
2011-05-20 13:55:25,354 - INFO - Processed 132100000 reads so far
2011-05-20 13:55:34,583 - INFO - Processed 132200000 reads so far
2011-05-20 13:55:42,206 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:82990052-103010052
2011-05-20 13:55:43,115 - INFO - Processed 132300000 reads so far
2011-05-20 13:55:53,023 - INFO - Processed 132400000 reads so far
2011-05-20 13:56:02,622 - INFO - Processed 132500000 reads so far
2011-05-20 13:56:12,395 - INFO - Processed 132600000 reads so far
2011-05-20 13:56:21,204 - INFO - Processed 132700000 reads so far
2011-05-20 13:56:32,795 - INFO - Processed 132800000 reads so far
2011-05-20 13:56:43,913 - INFO - Processed 132900000 reads so far
2011-05-20 13:56:53,652 - INFO - Processed 133000000 reads so far
2011-05-20 13:57:03,648 - INFO - Processed 133100000 reads so far
2011-05-20 13:57:12,347 - INFO - Processed 133200000 reads so far
2011-05-20 13:57:22,271 - INFO - Processed 133300000 reads so far
2011-05-20 13:57:31,314 - INFO - Processed 133400000 reads so far
2011-05-20 13:57:40,522 - INFO - Processed 133500000 reads so far
2011-05-20 13:57:43,802 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:102990062-123010062
2011-05-20 13:57:49,015 - INFO - Processed 133600000 reads so far
2011-05-20 13:57:58,788 - INFO - Processed 133700000 reads so far
2011-05-20 13:58:06,494 - INFO - Processed 133800000 reads so far
2011-05-20 13:58:14,033 - INFO - Processed 133900000 reads so far
2011-05-20 13:58:21,668 - INFO - Processed 134000000 reads so far
2011-05-20 13:58:30,267 - INFO - Processed 134100000 reads so far
2011-05-20 13:58:38,615 - INFO - Processed 134200000 reads so far
2011-05-20 13:58:46,001 - INFO - Processed 134300000 reads so far
2011-05-20 13:58:54,733 - INFO - Processed 134400000 reads so far
2011-05-20 13:59:01,119 - INFO - Processed 134500000 reads so far
2011-05-20 13:59:08,552 - INFO - Processed 134600000 reads so far
2011-05-20 13:59:15,368 - INFO - Processed 134700000 reads so far
2011-05-20 13:59:22,358 - INFO - Processed 134800000 reads so far
2011-05-20 13:59:30,111 - INFO - Processed 134900000 reads so far
2011-05-20 13:59:38,744 - INFO - Processed 135000000 reads so far
2011-05-20 13:59:47,722 - INFO - Processed 135100000 reads so far
2011-05-20 13:59:58,104 - INFO - Processed 135200000 reads so far
2011-05-20 14:00:07,859 - INFO - Processed 135300000 reads so far
2011-05-20 14:00:16,343 - INFO - Processed 135400000 reads so far
2011-05-20 14:00:25,633 - INFO - Processed 135500000 reads so far
2011-05-20 14:00:33,038 - INFO - Processed 135600000 reads so far
2011-05-20 14:00:43,473 - INFO - Processed 135700000 reads so far
2011-05-20 14:00:53,647 - INFO - Processed 135800000 reads so far
2011-05-20 14:01:03,865 - INFO - Processed 135900000 reads so far
2011-05-20 14:01:12,711 - INFO - Processed 136000000 reads so far
2011-05-20 14:01:16,091 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:122990064-143010064
2011-05-20 14:01:21,304 - INFO - Processed 136100000 reads so far
2011-05-20 14:01:29,043 - INFO - Processed 136200000 reads so far
2011-05-20 14:01:38,672 - INFO - Processed 136300000 reads so far
2011-05-20 14:01:49,537 - INFO - Processed 136400000 reads so far
2011-05-20 14:02:00,752 - INFO - Processed 136500000 reads so far
2011-05-20 14:02:11,896 - INFO - Processed 136600000 reads so far
2011-05-20 14:02:24,836 - INFO - Processed 136700000 reads so far
2011-05-20 14:02:35,772 - INFO - Processed 136800000 reads so far
2011-05-20 14:02:46,415 - INFO - Processed 136900000 reads so far
2011-05-20 14:02:57,363 - INFO - Processed 137000000 reads so far
2011-05-20 14:03:08,254 - INFO - Processed 137100000 reads so far
2011-05-20 14:03:19,209 - INFO - Processed 137200000 reads so far
2011-05-20 14:03:28,255 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:142990080-163010080
2011-05-20 14:03:30,924 - INFO - Processed 137300000 reads so far
2011-05-20 14:03:41,866 - INFO - Processed 137400000 reads so far
2011-05-20 14:03:52,583 - INFO - Processed 137500000 reads so far
2011-05-20 14:04:03,605 - INFO - Processed 137600000 reads so far
2011-05-20 14:04:14,734 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:2990041-23010041
2011-05-20 14:04:16,139 - INFO - Processed 137700000 reads so far
2011-05-20 14:04:27,180 - INFO - Processed 137800000 reads so far
2011-05-20 14:04:37,831 - INFO - Processed 137900000 reads so far
2011-05-20 14:04:48,078 - INFO - Processed 138000000 reads so far
2011-05-20 14:04:58,769 - INFO - Processed 138100000 reads so far
2011-05-20 14:05:06,120 - INFO - Processed 138200000 reads so far
2011-05-20 14:05:14,807 - INFO - Processed 138300000 reads so far
2011-05-20 14:05:25,557 - INFO - Processed 138400000 reads so far
2011-05-20 14:05:34,301 - INFO - Processed 138500000 reads so far
2011-05-20 14:05:43,671 - INFO - Processed 138600000 reads so far
2011-05-20 14:05:52,239 - INFO - Processed 138700000 reads so far
2011-05-20 14:06:00,695 - INFO - Processed 138800000 reads so far
2011-05-20 14:06:03,562 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:22990093-43010093
2011-05-20 14:06:10,783 - INFO - Processed 138900000 reads so far
2011-05-20 14:06:21,853 - INFO - Processed 139000000 reads so far
2011-05-20 14:06:31,337 - INFO - Processed 139100000 reads so far
2011-05-20 14:06:39,017 - INFO - Processed 139200000 reads so far
2011-05-20 14:06:47,453 - INFO - Processed 139300000 reads so far
2011-05-20 14:06:56,740 - INFO - Processed 139400000 reads so far
2011-05-20 14:07:04,923 - INFO - Processed 139500000 reads so far
2011-05-20 14:07:13,884 - INFO - Processed 139600000 reads so far
2011-05-20 14:07:22,477 - INFO - Processed 139700000 reads so far
2011-05-20 14:07:27,003 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:46346768-66366768
2011-05-20 14:07:30,924 - INFO - Processed 139800000 reads so far
2011-05-20 14:07:40,412 - INFO - Processed 139900000 reads so far
2011-05-20 14:07:49,447 - INFO - Processed 140000000 reads so far
2011-05-20 14:07:59,852 - INFO - Processed 140100000 reads so far
2011-05-20 14:08:10,071 - INFO - Processed 140200000 reads so far
2011-05-20 14:08:19,921 - INFO - Processed 140300000 reads so far
2011-05-20 14:08:28,353 - INFO - Processed 140400000 reads so far
2011-05-20 14:08:37,565 - INFO - Processed 140500000 reads so far
2011-05-20 14:08:47,722 - INFO - Processed 140600000 reads so far
2011-05-20 14:08:56,638 - INFO - Processed 140700000 reads so far
2011-05-20 14:09:06,218 - INFO - Processed 140800000 reads so far
2011-05-20 14:09:15,104 - INFO - Processed 140900000 reads so far
2011-05-20 14:09:21,949 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:66346776-86366776
2011-05-20 14:09:24,817 - INFO - Processed 141000000 reads so far
2011-05-20 14:09:31,946 - INFO - Processed 141100000 reads so far
2011-05-20 14:09:41,399 - INFO - Processed 141200000 reads so far
2011-05-20 14:09:49,777 - INFO - Processed 141300000 reads so far
2011-05-20 14:09:58,819 - INFO - Processed 141400000 reads so far
2011-05-20 14:10:08,899 - INFO - Processed 141500000 reads so far
2011-05-20 14:10:17,977 - INFO - Processed 141600000 reads so far
2011-05-20 14:10:27,126 - INFO - Processed 141700000 reads so far
2011-05-20 14:10:34,972 - INFO - Processed 141800000 reads so far
2011-05-20 14:10:44,180 - INFO - Processed 141900000 reads so far
2011-05-20 14:10:53,115 - INFO - Processed 142000000 reads so far
2011-05-20 14:11:00,713 - INFO - Processed 142100000 reads so far
2011-05-20 14:11:07,472 - INFO - Processed 142200000 reads so far
2011-05-20 14:11:09,496 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:86346808-106366808
2011-05-20 14:11:15,768 - INFO - Processed 142300000 reads so far
2011-05-20 14:11:26,280 - INFO - Processed 142400000 reads so far
2011-05-20 14:11:35,510 - INFO - Processed 142500000 reads so far
2011-05-20 14:11:44,407 - INFO - Processed 142600000 reads so far
2011-05-20 14:11:54,411 - INFO - Processed 142700000 reads so far
2011-05-20 14:12:04,360 - INFO - Processed 142800000 reads so far
2011-05-20 14:12:11,969 - INFO - Processed 142900000 reads so far
2011-05-20 14:12:20,920 - INFO - Processed 143000000 reads so far
2011-05-20 14:12:29,335 - INFO - Processed 143100000 reads so far
2011-05-20 14:12:37,696 - INFO - Processed 143200000 reads so far
2011-05-20 14:12:45,425 - INFO - Processed 143300000 reads so far
2011-05-20 14:12:53,476 - INFO - Processed 143400000 reads so far
2011-05-20 14:12:57,014 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:106346815-126366815
2011-05-20 14:13:02,851 - INFO - Processed 143500000 reads so far
2011-05-20 14:13:10,973 - INFO - Processed 143600000 reads so far
2011-05-20 14:13:18,459 - INFO - Processed 143700000 reads so far
2011-05-20 14:13:27,886 - INFO - Processed 143800000 reads so far
2011-05-20 14:13:35,254 - INFO - Processed 143900000 reads so far
2011-05-20 14:13:45,155 - INFO - Processed 144000000 reads so far
2011-05-20 14:13:54,407 - INFO - Processed 144100000 reads so far
2011-05-20 14:14:04,187 - INFO - Processed 144200000 reads so far
2011-05-20 14:14:14,603 - INFO - Processed 144300000 reads so far
2011-05-20 14:14:25,839 - INFO - Processed 144400000 reads so far
2011-05-20 14:14:33,348 - INFO - Processed 144500000 reads so far
2011-05-20 14:14:40,997 - INFO - Processed 144600000 reads so far
2011-05-20 14:14:46,388 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:126346837-146366837
2011-05-20 14:14:49,005 - INFO - Processed 144700000 reads so far
2011-05-20 14:14:58,325 - INFO - Processed 144800000 reads so far
2011-05-20 14:15:05,867 - INFO - Processed 144900000 reads so far
2011-05-20 14:15:13,862 - INFO - Processed 145000000 reads so far
2011-05-20 14:15:21,070 - INFO - Processed 145100000 reads so far
2011-05-20 14:15:29,534 - INFO - Processed 145200000 reads so far
2011-05-20 14:15:37,713 - INFO - Processed 145300000 reads so far
2011-05-20 14:15:45,248 - INFO - Processed 145400000 reads so far
2011-05-20 14:15:52,389 - INFO - Processed 145500000 reads so far
2011-05-20 14:16:00,189 - INFO - Processed 145600000 reads so far
2011-05-20 14:16:07,601 - INFO - Processed 145700000 reads so far
2011-05-20 14:16:16,133 - INFO - Processed 145800000 reads so far
2011-05-20 14:16:23,355 - INFO - Processed 145900000 reads so far
2011-05-20 14:16:26,523 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:146346838-166366838
2011-05-20 14:16:31,119 - INFO - Processed 146000000 reads so far
2011-05-20 14:16:40,029 - INFO - Processed 146100000 reads so far
2011-05-20 14:16:50,378 - INFO - Processed 146200000 reads so far
2011-05-20 14:16:58,428 - INFO - Processed 146300000 reads so far
2011-05-20 14:17:00,476 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7_random:0-20010006
2011-05-20 14:17:01,335 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:2990031-23010031
2011-05-20 14:17:05,989 - INFO - Processed 146400000 reads so far
2011-05-20 14:17:14,027 - INFO - Processed 146500000 reads so far
2011-05-20 14:17:23,482 - INFO - Processed 146600000 reads so far
2011-05-20 14:17:32,668 - INFO - Processed 146700000 reads so far
2011-05-20 14:17:41,965 - INFO - Processed 146800000 reads so far
2011-05-20 14:17:49,309 - INFO - Processed 146900000 reads so far
2011-05-20 14:17:57,035 - INFO - Processed 147000000 reads so far
2011-05-20 14:18:05,310 - INFO - Processed 147100000 reads so far
2011-05-20 14:18:13,361 - INFO - Processed 147200000 reads so far
2011-05-20 14:18:21,727 - INFO - Processed 147300000 reads so far
2011-05-20 14:18:30,179 - INFO - Processed 147400000 reads so far
2011-05-20 14:18:36,860 - INFO - Processed 147500000 reads so far
2011-05-20 14:18:44,205 - INFO - Processed 147600000 reads so far
2011-05-20 14:18:47,445 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:22990079-43010079
2011-05-20 14:18:52,280 - INFO - Processed 147700000 reads so far
2011-05-20 14:19:00,522 - INFO - Processed 147800000 reads so far
2011-05-20 14:19:08,664 - INFO - Processed 147900000 reads so far
2011-05-20 14:19:17,679 - INFO - Processed 148000000 reads so far
2011-05-20 14:19:26,770 - INFO - Processed 148100000 reads so far
2011-05-20 14:19:35,843 - INFO - Processed 148200000 reads so far
2011-05-20 14:19:45,388 - INFO - Processed 148300000 reads so far
2011-05-20 14:19:54,682 - INFO - Processed 148400000 reads so far
2011-05-20 14:20:03,537 - INFO - Processed 148500000 reads so far
2011-05-20 14:20:10,703 - INFO - Processed 148600000 reads so far
2011-05-20 14:20:18,344 - INFO - Processed 148700000 reads so far
2011-05-20 14:20:28,410 - INFO - Processed 148800000 reads so far
2011-05-20 14:20:32,518 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:42990112-63010112
2011-05-20 14:20:39,595 - INFO - Processed 148900000 reads so far
2011-05-20 14:20:48,035 - INFO - Processed 149000000 reads so far
2011-05-20 14:20:57,548 - INFO - Processed 149100000 reads so far
2011-05-20 14:21:08,649 - INFO - Processed 149200000 reads so far
2011-05-20 14:21:17,975 - INFO - Processed 149300000 reads so far
2011-05-20 14:21:26,317 - INFO - Processed 149400000 reads so far
2011-05-20 14:21:33,875 - INFO - Processed 149500000 reads so far
2011-05-20 14:21:43,560 - INFO - Processed 149600000 reads so far
2011-05-20 14:21:51,976 - INFO - Processed 149700000 reads so far
2011-05-20 14:22:00,573 - INFO - Processed 149800000 reads so far
2011-05-20 14:22:10,103 - INFO - Processed 149900000 reads so far
2011-05-20 14:22:11,516 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:62990114-83010114
2011-05-20 14:22:18,186 - INFO - Processed 150000000 reads so far
2011-05-20 14:22:27,672 - INFO - Processed 150100000 reads so far
2011-05-20 14:22:35,753 - INFO - Processed 150200000 reads so far
2011-05-20 14:22:43,133 - INFO - Processed 150300000 reads so far
2011-05-20 14:22:51,194 - INFO - Processed 150400000 reads so far
2011-05-20 14:22:59,966 - INFO - Processed 150500000 reads so far
2011-05-20 14:23:08,864 - INFO - Processed 150600000 reads so far
2011-05-20 14:23:18,667 - INFO - Processed 150700000 reads so far
2011-05-20 14:23:26,489 - INFO - Processed 150800000 reads so far
2011-05-20 14:23:33,834 - INFO - Processed 150900000 reads so far
2011-05-20 14:23:41,288 - INFO - Processed 151000000 reads so far
2011-05-20 14:23:49,015 - INFO - Processed 151100000 reads so far
2011-05-20 14:23:51,851 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:82990295-103010295
2011-05-20 14:23:57,201 - INFO - Processed 151200000 reads so far
2011-05-20 14:24:04,939 - INFO - Processed 151300000 reads so far
2011-05-20 14:24:13,723 - INFO - Processed 151400000 reads so far
2011-05-20 14:24:21,075 - INFO - Processed 151500000 reads so far
2011-05-20 14:24:30,561 - INFO - Processed 151600000 reads so far
2011-05-20 14:24:39,903 - INFO - Processed 151700000 reads so far
2011-05-20 14:24:47,598 - INFO - Processed 151800000 reads so far
2011-05-20 14:24:54,669 - INFO - Processed 151900000 reads so far
2011-05-20 14:25:03,184 - INFO - Processed 152000000 reads so far
2011-05-20 14:25:11,143 - INFO - Processed 152100000 reads so far
2011-05-20 14:25:19,156 - INFO - Processed 152200000 reads so far
2011-05-20 14:25:28,765 - INFO - Processed 152300000 reads so far
2011-05-20 14:25:32,858 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:102990305-123010305
2011-05-20 14:25:38,771 - INFO - Processed 152400000 reads so far
2011-05-20 14:25:50,020 - INFO - Processed 152500000 reads so far
2011-05-20 14:25:57,940 - INFO - Processed 152600000 reads so far
2011-05-20 14:26:06,660 - INFO - Processed 152700000 reads so far
2011-05-20 14:26:14,379 - INFO - Processed 152800000 reads so far
2011-05-20 14:26:24,551 - INFO - Processed 152900000 reads so far
2011-05-20 14:26:32,450 - INFO - Processed 153000000 reads so far
2011-05-20 14:26:40,266 - INFO - Processed 153100000 reads so far
2011-05-20 14:26:50,015 - INFO - Processed 153200000 reads so far
2011-05-20 14:27:01,118 - INFO - Processed 153300000 reads so far
2011-05-20 14:27:11,706 - INFO - Processed 153400000 reads so far
2011-05-20 14:27:20,063 - INFO - Processed 153500000 reads so far
2011-05-20 14:27:27,827 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:122990306-143010306
2011-05-20 14:27:31,442 - INFO - Processed 153600000 reads so far
2011-05-20 14:27:41,367 - INFO - Processed 153700000 reads so far
2011-05-20 14:27:50,168 - INFO - Processed 153800000 reads so far
2011-05-20 14:27:57,653 - INFO - Processed 153900000 reads so far
2011-05-20 14:28:05,761 - INFO - Processed 154000000 reads so far
2011-05-20 14:28:13,272 - INFO - Processed 154100000 reads so far
2011-05-20 14:28:15,313 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8_random:0-20010037
2011-05-20 14:28:21,143 - INFO - Processed 154200000 reads so far
2011-05-20 14:28:25,733 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:2989968-23009968
2011-05-20 14:28:27,642 - INFO - Processed 154300000 reads so far
2011-05-20 14:28:33,837 - INFO - Processed 154400000 reads so far
2011-05-20 14:28:40,173 - INFO - Processed 154500000 reads so far
2011-05-20 14:28:46,408 - INFO - Processed 154600000 reads so far
2011-05-20 14:28:52,937 - INFO - Processed 154700000 reads so far
2011-05-20 14:29:00,376 - INFO - Processed 154800000 reads so far
2011-05-20 14:29:06,189 - INFO - Processed 154900000 reads so far
2011-05-20 14:29:12,050 - INFO - Processed 155000000 reads so far
2011-05-20 14:29:17,981 - INFO - Processed 155100000 reads so far
2011-05-20 14:29:23,953 - INFO - Processed 155200000 reads so far
2011-05-20 14:29:29,869 - INFO - Processed 155300000 reads so far
2011-05-20 14:29:35,812 - INFO - Processed 155400000 reads so far
2011-05-20 14:29:42,092 - INFO - Processed 155500000 reads so far
2011-05-20 14:29:49,966 - INFO - Processed 155600000 reads so far
2011-05-20 14:29:56,431 - INFO - Processed 155700000 reads so far
2011-05-20 14:30:01,939 - INFO - Processed 155800000 reads so far
2011-05-20 14:30:07,984 - INFO - Processed 155900000 reads so far
2011-05-20 14:30:14,723 - INFO - Processed 156000000 reads so far
2011-05-20 14:30:21,399 - INFO - Processed 156100000 reads so far
2011-05-20 14:30:27,314 - INFO - Processed 156200000 reads so far
2011-05-20 14:30:34,552 - INFO - Processed 156300000 reads so far
2011-05-20 14:30:44,231 - INFO - Processed 156400000 reads so far
2011-05-20 14:30:53,005 - INFO - Processed 156500000 reads so far
2011-05-20 14:30:59,686 - INFO - Processed 156600000 reads so far
2011-05-20 14:31:15,269 - INFO - Processed 156700000 reads so far
2011-05-20 14:31:38,716 - INFO - Processed 156800000 reads so far
2011-05-20 14:31:45,888 - INFO - Processed 156900000 reads so far
2011-05-20 14:31:53,860 - INFO - Processed 157000000 reads so far
2011-05-20 14:32:00,759 - INFO - Processed 157100000 reads so far
2011-05-20 14:32:07,327 - INFO - Processed 157200000 reads so far
2011-05-20 14:32:15,211 - INFO - Processed 157300000 reads so far
2011-05-20 14:32:22,960 - INFO - Processed 157400000 reads so far
2011-05-20 14:32:29,205 - INFO - Processed 157500000 reads so far
2011-05-20 14:32:37,567 - INFO - Processed 157600000 reads so far
2011-05-20 14:32:45,109 - INFO - Processed 157700000 reads so far
2011-05-20 14:32:53,506 - INFO - Processed 157800000 reads so far
2011-05-20 14:33:00,816 - INFO - Processed 157900000 reads so far
2011-05-20 14:33:08,664 - INFO - Processed 158000000 reads so far
2011-05-20 14:33:16,203 - INFO - Processed 158100000 reads so far
2011-05-20 14:33:22,513 - INFO - Processed 158200000 reads so far
2011-05-20 14:33:29,294 - INFO - Processed 158300000 reads so far
2011-05-20 14:33:35,781 - INFO - Processed 158400000 reads so far
2011-05-20 14:33:41,861 - INFO - Processed 158500000 reads so far
2011-05-20 14:33:48,667 - INFO - Processed 158600000 reads so far
2011-05-20 14:33:55,698 - INFO - Processed 158700000 reads so far
2011-05-20 14:34:02,355 - INFO - Processed 158800000 reads so far
2011-05-20 14:34:09,326 - INFO - Processed 158900000 reads so far
2011-05-20 14:34:16,169 - INFO - Processed 159000000 reads so far
2011-05-20 14:34:22,202 - INFO - Processed 159100000 reads so far
2011-05-20 14:34:28,489 - INFO - Processed 159200000 reads so far
2011-05-20 14:34:36,299 - INFO - Processed 159300000 reads so far
2011-05-20 14:34:45,298 - INFO - Processed 159400000 reads so far
2011-05-20 14:34:53,037 - INFO - Processed 159500000 reads so far
2011-05-20 14:35:01,966 - INFO - Processed 159600000 reads so far
2011-05-20 14:35:09,561 - INFO - Processed 159700000 reads so far
2011-05-20 14:35:17,851 - INFO - Processed 159800000 reads so far
2011-05-20 14:35:27,516 - INFO - Processed 159900000 reads so far
2011-05-20 14:35:36,735 - INFO - Processed 160000000 reads so far
2011-05-20 14:35:45,554 - INFO - Processed 160100000 reads so far
2011-05-20 14:35:54,385 - INFO - Processed 160200000 reads so far
2011-05-20 14:36:03,434 - INFO - Processed 160300000 reads so far
2011-05-20 14:36:12,300 - INFO - Processed 160400000 reads so far
2011-05-20 14:36:21,184 - INFO - Processed 160500000 reads so far
2011-05-20 14:36:27,521 - INFO - Processed 160600000 reads so far
2011-05-20 14:36:37,797 - INFO - Processed 160700000 reads so far
2011-05-20 14:36:46,798 - INFO - Processed 160800000 reads so far
2011-05-20 14:36:53,138 - INFO - Processed 160900000 reads so far
2011-05-20 14:36:59,315 - INFO - Processed 161000000 reads so far
2011-05-20 14:37:05,931 - INFO - Processed 161100000 reads so far
2011-05-20 14:37:11,970 - INFO - Processed 161200000 reads so far
2011-05-20 14:37:18,227 - INFO - Processed 161300000 reads so far
2011-05-20 14:37:24,401 - INFO - Processed 161400000 reads so far
2011-05-20 14:37:31,191 - INFO - Processed 161500000 reads so far
2011-05-20 14:37:38,599 - INFO - Processed 161600000 reads so far
2011-05-20 14:37:44,806 - INFO - Processed 161700000 reads so far
2011-05-20 14:37:51,399 - INFO - Processed 161800000 reads so far
2011-05-20 14:37:59,917 - INFO - Processed 161900000 reads so far
2011-05-20 14:38:06,478 - INFO - Processed 162000000 reads so far
2011-05-20 14:38:14,284 - INFO - Processed 162100000 reads so far
2011-05-20 14:38:20,485 - INFO - Processed 162200000 reads so far
2011-05-20 14:38:27,548 - INFO - Processed 162300000 reads so far
2011-05-20 14:38:34,835 - INFO - Processed 162400000 reads so far
2011-05-20 14:38:42,378 - INFO - Processed 162500000 reads so far
2011-05-20 14:38:51,743 - INFO - Processed 162600000 reads so far
2011-05-20 14:38:59,980 - INFO - Processed 162700000 reads so far
2011-05-20 14:39:07,967 - INFO - Processed 162800000 reads so far
2011-05-20 14:39:15,475 - INFO - Processed 162900000 reads so far
2011-05-20 14:39:22,947 - INFO - Processed 163000000 reads so far
2011-05-20 14:39:31,453 - INFO - Processed 163100000 reads so far
2011-05-20 14:39:39,092 - INFO - Processed 163200000 reads so far
2011-05-20 14:39:48,480 - INFO - Processed 163300000 reads so far
2011-05-20 14:39:56,630 - INFO - Processed 163400000 reads so far
2011-05-20 14:40:04,599 - INFO - Processed 163500000 reads so far
2011-05-20 14:40:09,658 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:22989991-43009991
2011-05-20 14:40:12,498 - INFO - Processed 163600000 reads so far
2011-05-20 14:40:20,795 - INFO - Processed 163700000 reads so far
2011-05-20 14:40:28,969 - INFO - Processed 163800000 reads so far
2011-05-20 14:40:36,888 - INFO - Processed 163900000 reads so far
2011-05-20 14:40:44,552 - INFO - Processed 164000000 reads so far
2011-05-20 14:40:53,456 - INFO - Processed 164100000 reads so far
2011-05-20 14:41:00,759 - INFO - Processed 164200000 reads so far
2011-05-20 14:41:11,953 - INFO - Processed 164300000 reads so far
2011-05-20 14:41:18,528 - INFO - Processed 164400000 reads so far
2011-05-20 14:41:25,170 - INFO - Processed 164500000 reads so far
2011-05-20 14:41:33,413 - INFO - Processed 164600000 reads so far
2011-05-20 14:41:41,088 - INFO - Processed 164700000 reads so far
2011-05-20 14:41:50,190 - INFO - Processed 164800000 reads so far
2011-05-20 14:41:59,901 - INFO - Processed 164900000 reads so far
2011-05-20 14:42:09,766 - INFO - Processed 165000000 reads so far
2011-05-20 14:42:10,522 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:42990013-63010013
2011-05-20 14:42:17,353 - INFO - Processed 165100000 reads so far
2011-05-20 14:42:28,300 - INFO - Processed 165200000 reads so far
2011-05-20 14:42:37,917 - INFO - Processed 165300000 reads so far
2011-05-20 14:42:47,491 - INFO - Processed 165400000 reads so far
2011-05-20 14:42:56,260 - INFO - Processed 165500000 reads so far
2011-05-20 14:43:06,050 - INFO - Processed 165600000 reads so far
2011-05-20 14:43:15,754 - INFO - Processed 165700000 reads so far
2011-05-20 14:43:25,229 - INFO - Processed 165800000 reads so far
2011-05-20 14:43:34,170 - INFO - Processed 165900000 reads so far
2011-05-20 14:43:44,079 - INFO - Processed 166000000 reads so far
2011-05-20 14:43:52,797 - INFO - Processed 166100000 reads so far
2011-05-20 14:44:01,446 - INFO - Processed 166200000 reads so far
2011-05-20 14:44:07,480 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:62990022-83010022
2011-05-20 14:44:11,936 - INFO - Processed 166300000 reads so far
2011-05-20 14:44:21,371 - INFO - Processed 166400000 reads so far
2011-05-20 14:44:31,475 - INFO - Processed 166500000 reads so far
2011-05-20 14:44:42,493 - INFO - Processed 166600000 reads so far
2011-05-20 14:44:53,422 - INFO - Processed 166700000 reads so far
2011-05-20 14:45:05,637 - INFO - Processed 166800000 reads so far
2011-05-20 14:45:16,681 - INFO - Processed 166900000 reads so far
2011-05-20 14:45:31,034 - INFO - Processed 167000000 reads so far
2011-05-20 14:45:42,206 - INFO - Processed 167100000 reads so far
2011-05-20 14:45:53,290 - INFO - Processed 167200000 reads so far
2011-05-20 14:46:05,064 - INFO - Processed 167300000 reads so far
2011-05-20 14:46:16,617 - INFO - Processed 167400000 reads so far
2011-05-20 14:46:21,766 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:82990027-103010027
2011-05-20 14:46:23,356 - INFO - Processed 167500000 reads so far
2011-05-20 14:46:30,874 - INFO - Processed 167600000 reads so far
2011-05-20 14:46:39,730 - INFO - Processed 167700000 reads so far
2011-05-20 14:46:55,247 - INFO - Processed 167800000 reads so far
2011-05-20 14:47:03,906 - INFO - Processed 167900000 reads so far
2011-05-20 14:47:10,641 - INFO - Processed 168000000 reads so far
2011-05-20 14:47:19,452 - INFO - Processed 168100000 reads so far
2011-05-20 14:47:26,124 - INFO - Processed 168200000 reads so far
2011-05-20 14:47:35,955 - INFO - Processed 168300000 reads so far
2011-05-20 14:47:44,240 - INFO - Processed 168400000 reads so far
2011-05-20 14:47:53,296 - INFO - Processed 168500000 reads so far
2011-05-20 14:48:00,975 - INFO - Processed 168600000 reads so far
2011-05-20 14:48:07,823 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:102990029-123010029
2011-05-20 14:48:07,972 - INFO - Processed 168700000 reads so far
2011-05-20 14:48:16,300 - INFO - Processed 168800000 reads so far
2011-05-20 14:48:23,372 - INFO - Processed 168900000 reads so far
2011-05-20 14:48:30,350 - INFO - Processed 169000000 reads so far
2011-05-20 14:48:38,127 - INFO - Processed 169100000 reads so far
2011-05-20 14:48:45,013 - INFO - Processed 169200000 reads so far
2011-05-20 14:48:51,763 - INFO - Processed 169300000 reads so far
2011-05-20 14:48:58,737 - INFO - Processed 169400000 reads so far
2011-05-20 14:49:05,644 - INFO - Processed 169500000 reads so far
2011-05-20 14:49:13,962 - INFO - Processed 169600000 reads so far
2011-05-20 14:49:21,813 - INFO - Processed 169700000 reads so far
2011-05-20 14:49:29,109 - INFO - Processed 169800000 reads so far
2011-05-20 14:49:38,713 - INFO - Processed 169900000 reads so far
2011-05-20 14:49:43,634 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:122990044-143010044
2011-05-20 14:49:46,517 - INFO - Processed 170000000 reads so far
2011-05-20 14:49:47,932 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9_random:0-20010021
2011-05-20 14:49:50,615 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrM:0-20010000
2011-05-20 14:49:52,329 - INFO - Processed 170100000 reads so far
2011-05-20 14:49:53,702 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrUn_random:0-20010001
2011-05-20 14:49:59,704 - INFO - Processed 170200000 reads so far
2011-05-20 14:50:08,964 - INFO - Processed 170300000 reads so far
2011-05-20 14:50:19,393 - INFO - Processed 170400000 reads so far
2011-05-20 14:50:29,470 - INFO - Processed 170500000 reads so far
2011-05-20 14:50:37,540 - INFO - Processed 170600000 reads so far
2011-05-20 14:50:38,934 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:2989998-23009998
2011-05-20 14:50:48,157 - INFO - Processed 170700000 reads so far
2011-05-20 14:50:59,414 - INFO - Processed 170800000 reads so far
2011-05-20 14:51:14,008 - INFO - Processed 170900000 reads so far
2011-05-20 14:51:25,731 - INFO - Processed 171000000 reads so far
2011-05-20 14:51:38,947 - INFO - Processed 171100000 reads so far
2011-05-20 14:51:50,069 - INFO - Processed 171200000 reads so far
2011-05-20 14:52:00,008 - INFO - Processed 171300000 reads so far
2011-05-20 14:52:02,564 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:22990101-43010101
2011-05-20 14:52:07,469 - INFO - Processed 171400000 reads so far
2011-05-20 14:52:15,284 - INFO - Processed 171500000 reads so far
2011-05-20 14:52:21,777 - INFO - Processed 171600000 reads so far
2011-05-20 14:52:29,784 - INFO - Processed 171700000 reads so far
2011-05-20 14:52:37,730 - INFO - Processed 171800000 reads so far
2011-05-20 14:52:52,416 - INFO - Processed 171900000 reads so far
2011-05-20 14:53:04,345 - INFO - Processed 172000000 reads so far
2011-05-20 14:53:09,173 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:42990119-63010119
2011-05-20 14:53:13,882 - INFO - Processed 172100000 reads so far
2011-05-20 14:53:24,726 - INFO - Processed 172200000 reads so far
2011-05-20 14:53:34,300 - INFO - Processed 172300000 reads so far
2011-05-20 14:53:43,253 - INFO - Processed 172400000 reads so far
2011-05-20 14:53:53,095 - INFO - Processed 172500000 reads so far
2011-05-20 14:54:03,755 - INFO - Processed 172600000 reads so far
2011-05-20 14:54:11,733 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:62990200-83010200
2011-05-20 14:54:14,392 - INFO - Processed 172700000 reads so far
2011-05-20 14:54:23,478 - INFO - Processed 172800000 reads so far
2011-05-20 14:54:35,986 - INFO - Processed 172900000 reads so far
2011-05-20 14:54:47,174 - INFO - Processed 173000000 reads so far
2011-05-20 14:54:55,912 - INFO - Processed 173100000 reads so far
2011-05-20 14:55:05,678 - INFO - Processed 173200000 reads so far
2011-05-20 14:55:15,858 - INFO - Processed 173300000 reads so far
2011-05-20 14:55:16,906 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:82990213-103010213
2011-05-20 14:55:26,049 - INFO - Processed 173400000 reads so far
2011-05-20 14:55:35,866 - INFO - Processed 173500000 reads so far
2011-05-20 14:55:47,734 - INFO - Processed 173600000 reads so far
2011-05-20 14:55:59,753 - INFO - Processed 173700000 reads so far
2011-05-20 14:56:10,425 - INFO - Processed 173800000 reads so far
2011-05-20 14:56:22,159 - INFO - Processed 173900000 reads so far
2011-05-20 14:56:26,076 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:102990262-123010262
2011-05-20 14:56:31,960 - INFO - Processed 174000000 reads so far
2011-05-20 14:56:44,411 - INFO - Processed 174100000 reads so far
2011-05-20 14:56:56,335 - INFO - Processed 174200000 reads so far
2011-05-20 14:57:08,495 - INFO - Processed 174300000 reads so far
2011-05-20 14:57:20,621 - INFO - Processed 174400000 reads so far
2011-05-20 14:57:30,211 - INFO - Processed 174500000 reads so far
2011-05-20 14:57:38,006 - INFO - Processed 174600000 reads so far
2011-05-20 14:57:44,545 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:122990304-143010304
2011-05-20 14:57:46,518 - INFO - Processed 174700000 reads so far
2011-05-20 14:57:58,552 - INFO - Processed 174800000 reads so far
2011-05-20 14:58:10,574 - INFO - Processed 174900000 reads so far
2011-05-20 14:58:24,088 - INFO - Processed 175000000 reads so far
2011-05-20 14:58:37,118 - INFO - Processed 175100000 reads so far
2011-05-20 14:58:49,042 - INFO - Processed 175200000 reads so far
2011-05-20 14:58:59,704 - INFO - Processed 175300000 reads so far
2011-05-20 14:59:10,377 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:142990341-163010341
2011-05-20 14:59:11,526 - INFO - Processed 175400000 reads so far
2011-05-20 14:59:23,676 - INFO - Processed 175500000 reads so far
2011-05-20 14:59:34,758 - INFO - Processed 175600000 reads so far
2011-05-20 14:59:47,912 - INFO - Processed 175700000 reads so far
2011-05-20 14:59:59,952 - INFO - Processed 175800000 reads so far
2011-05-20 15:00:11,356 - INFO - Processed 175900000 reads so far
2011-05-20 15:00:22,523 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:162990378-183010378
2011-05-20 15:00:23,191 - INFO - Processed 176000000 reads so far
2011-05-20 15:00:34,825 - INFO - Processed 176100000 reads so far
2011-05-20 15:00:45,062 - INFO - Processed 176200000 reads so far
2011-05-20 15:00:48,230 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX_random:0-20010029
2011-05-20 15:00:52,425 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY:0-20010000
2011-05-20 15:00:57,650 - INFO - Processed 176300000 reads so far
2011-05-20 15:01:03,889 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:0-20010204
2011-05-20 15:01:08,500 - INFO - Processed 176400000 reads so far
2011-05-20 15:01:18,819 - INFO - Processed 176500000 reads so far
2011-05-20 15:01:29,162 - INFO - Processed 176600000 reads so far
2011-05-20 15:01:39,913 - INFO - Processed 176700000 reads so far
2011-05-20 15:01:50,045 - INFO - Processed 176800000 reads so far
2011-05-20 15:02:01,691 - INFO - Processed 176900000 reads so far
2011-05-20 15:02:11,328 - INFO - Processed 177000000 reads so far
2011-05-20 15:02:20,513 - INFO - Processed 177100000 reads so far
2011-05-20 15:02:32,124 - INFO - Processed 177200000 reads so far
2011-05-20 15:02:40,180 - INFO - Processed 177300000 reads so far
2011-05-20 15:02:48,704 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:19990576-40010576
2011-05-20 15:02:52,049 - INFO - Processed 177400000 reads so far
2011-05-20 15:03:02,567 - INFO - Processed 177500000 reads so far
2011-05-20 15:03:13,689 - INFO - Processed 177600000 reads so far
2011-05-20 15:03:26,968 - INFO - Processed 177700000 reads so far
2011-05-20 15:03:37,111 - INFO - Processed 177800000 reads so far
2011-05-20 15:03:47,705 - INFO - Processed 177900000 reads so far
2011-05-20 15:03:48,022 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:39990583-60010583
2011-05-20 15:03:58,291 - INFO - Processed 178000000 reads so far
2011-05-20 15:04:10,206 - INFO - Processed 178100000 reads so far
2011-05-20 15:04:21,170 - INFO - Processed 178200000 reads so far
2011-05-20 15:04:31,053 - INFO - Processed 178300000 reads so far
2011-05-20 15:04:40,378 - INFO - Processed 178400000 reads so far
2011-05-20 15:04:48,004 - INFO - Processed 178500000 reads so far
2011-05-20 15:04:56,277 - INFO - Processed 178600000 reads so far
2011-05-20 15:05:02,974 - INFO - Processed 178700000 reads so far
2011-05-20 15:05:07,340 - INFO - Processed 178800000 reads so far
2011-05-20 15:05:10,584 - INFO - Processed 178900000 reads so far
2011-05-20 15:05:14,405 - INFO - Processed 179000000 reads so far
2011-05-20 15:05:18,432 - INFO - Processed 179100000 reads so far
2011-05-20 15:05:22,282 - INFO - Processed 179200000 reads so far
2011-05-20 15:05:26,545 - INFO - Processed 179300000 reads so far
2011-05-20 15:05:30,834 - INFO - Processed 179400000 reads so far
2011-05-20 15:05:33,992 - INFO - Processed 179500000 reads so far
2011-05-20 15:05:37,131 - INFO - Processed 179600000 reads so far
2011-05-20 15:05:41,561 - INFO - Processed 179700000 reads so far
2011-05-20 15:05:45,812 - INFO - Processed 179800000 reads so far
2011-05-20 15:05:50,139 - INFO - Processed 179900000 reads so far
2011-05-20 15:05:54,397 - INFO - Processed 180000000 reads so far
2011-05-20 15:05:58,643 - INFO - Processed 180100000 reads so far
2011-05-20 15:06:02,872 - INFO - Processed 180200000 reads so far
2011-05-20 15:06:07,123 - INFO - Processed 180300000 reads so far
2011-05-20 15:06:12,801 - INFO - Processed 180400000 reads so far
2011-05-20 15:06:15,781 - INFO - Processed 180500000 reads so far
2011-05-20 15:06:19,889 - INFO - Processed 180600000 reads so far
2011-05-20 15:06:23,848 - INFO - Processed 180700000 reads so far
2011-05-20 15:06:27,587 - INFO - Processed 180800000 reads so far
2011-05-20 15:06:31,067 - INFO - Processed 180900000 reads so far
2011-05-20 15:06:34,875 - INFO - Processed 181000000 reads so far
2011-05-20 15:06:36,203 - INFO - Finished loading data. Outputting QC metrics
2011-05-20 15:07:05,296 - INFO - Finished outputting QC metrics
2011-05-20 15:07:05,468 - INFO - Finished generating QC metrics