2011-05-19 21:12:08,788 - INFO - Generating QC metrics for BAM File ['WTCHG_11734.bam']
2011-05-19 21:12:08,789 - INFO - Output will go to WTCHG_11734.qc.txt.tmp
2011-05-19 21:12:08,789 - INFO - Reading GC Map from file /data/Genomes/gcMap/Mouse37.gcMap.gz
2011-05-19 21:14:54,777 - INFO - Finished reading GC Map
2011-05-19 21:14:54,777 - INFO - Reading CDS from exon definition file /data/Genomes/annotation/Mouse37.refGene.txt.gz
2011-05-19 21:14:57,679 - INFO - Read 382138 exons (33804740 nucleotides) for 32 chromosomes
2011-05-19 21:14:57,681 - INFO - Computing coverage cut-off
2011-05-19 21:14:57,681 - INFO - Retrieving BAM file coverage info from samtools pileup
2011-05-19 21:15:04,514 - INFO - Processed 1000000 pile-up sites
2011-05-19 21:15:08,327 - INFO - Processed 2000000 pile-up sites
2011-05-19 21:15:10,755 - INFO - Processed 3000000 pile-up sites
2011-05-19 21:15:13,189 - INFO - Processed 4000000 pile-up sites
2011-05-19 21:15:18,852 - INFO - Processed 5000000 pile-up sites
2011-05-19 21:15:22,386 - INFO - Processed 6000000 pile-up sites
2011-05-19 21:15:25,622 - INFO - Processed 7000000 pile-up sites
2011-05-19 21:15:28,909 - INFO - Processed 8000000 pile-up sites
2011-05-19 21:15:33,149 - INFO - Processed 9000000 pile-up sites
2011-05-19 21:15:37,350 - INFO - Processed 10000000 pile-up sites
2011-05-19 21:15:41,422 - INFO - Processed 11000000 pile-up sites
2011-05-19 21:15:47,317 - INFO - Processed 12000000 pile-up sites
2011-05-19 21:15:52,027 - INFO - Processed 13000000 pile-up sites
2011-05-19 21:15:55,975 - INFO - Processed 14000000 pile-up sites
2011-05-19 21:16:00,062 - INFO - Processed 15000000 pile-up sites
2011-05-19 21:16:05,819 - INFO - Processed 16000000 pile-up sites
2011-05-19 21:16:10,269 - INFO - Processed 17000000 pile-up sites
2011-05-19 21:16:15,032 - INFO - Processed 18000000 pile-up sites
2011-05-19 21:16:23,104 - INFO - Processed 19000000 pile-up sites
2011-05-19 21:16:28,345 - INFO - Processed 20000000 pile-up sites
2011-05-19 21:16:34,411 - INFO - Processed 21000000 pile-up sites
2011-05-19 21:16:41,504 - INFO - Processed 22000000 pile-up sites
2011-05-19 21:16:46,231 - INFO - Processed 23000000 pile-up sites
2011-05-19 21:16:51,720 - INFO - Processed 24000000 pile-up sites
2011-05-19 21:16:56,302 - INFO - Processed 25000000 pile-up sites
2011-05-19 21:17:03,038 - INFO - Processed 26000000 pile-up sites
2011-05-19 21:17:08,110 - INFO - Processed 27000000 pile-up sites
2011-05-19 21:17:12,544 - INFO - Processed 28000000 pile-up sites
2011-05-19 21:17:16,830 - INFO - Processed 29000000 pile-up sites
2011-05-19 21:17:21,271 - INFO - Processed 30000000 pile-up sites
2011-05-19 21:17:25,733 - INFO - Processed 31000000 pile-up sites
2011-05-19 21:17:30,895 - INFO - Processed 32000000 pile-up sites
2011-05-19 21:17:37,469 - INFO - Finished processing pile-up on 32678250 sites (200000002 nucleotides)
2011-05-19 21:17:37,470 - INFO - Coverage cut-off value is 31
2011-05-19 21:17:37,470 - INFO - Loading data into QC data manager
2011-05-19 21:17:37,847 - WARNING - Found RG tag 'SM' (value: 236) duplicated in CO field (value: 4626/10) -- ignoring CO value
2011-05-19 21:17:37,847 - WARNING - Found RG tag 'ID' (value: WTCHG_11734) duplicated in CO field (value: 4626/10) -- ignoring CO value
2011-05-19 21:17:37,848 - WARNING - Found RG tag 'SM' (value: 236) duplicated in CO field (value: 4626/10) -- ignoring CO value
2011-05-19 21:17:37,848 - WARNING - Found RG tag 'ID' (value: WTCHG_11734) duplicated in CO field (value: 4626/10) -- ignoring CO value
2011-05-19 21:17:37,848 - WARNING - Found RG tag 'SM' (value: 236) duplicated in CO field (value: 4626/10) -- ignoring CO value
2011-05-19 21:17:37,848 - WARNING - Found RG tag 'ID' (value: WTCHG_11734) duplicated in CO field (value: 4626/10) -- ignoring CO value
2011-05-19 21:17:37,848 - WARNING - Found RG tag 'SM' (value: 236) duplicated in CO field (value: 4626/10) -- ignoring CO value
2011-05-19 21:17:37,848 - WARNING - Found RG tag 'ID' (value: WTCHG_11734) duplicated in CO field (value: 4626/10) -- ignoring CO value
2011-05-19 21:17:37,907 - WARNING - Found RG tag 'SM' (value: 236) duplicated in CO field (value: 4626/10) -- ignoring CO value
2011-05-19 21:17:37,907 - WARNING - Found RG tag 'ID' (value: WTCHG_11734) duplicated in CO field (value: 4626/10) -- ignoring CO value
2011-05-19 21:17:37,907 - WARNING - Found RG tag 'SM' (value: 236) duplicated in CO field (value: 4626/10) -- ignoring CO value
2011-05-19 21:17:37,907 - WARNING - Found RG tag 'ID' (value: WTCHG_11734) duplicated in CO field (value: 4626/10) -- ignoring CO value
2011-05-19 21:17:37,907 - WARNING - Found RG tag 'SM' (value: 236) duplicated in CO field (value: 4626/10) -- ignoring CO value
2011-05-19 21:17:37,908 - WARNING - Found RG tag 'ID' (value: WTCHG_11734) duplicated in CO field (value: 4626/10) -- ignoring CO value
2011-05-19 21:17:37,908 - WARNING - Found RG tag 'SM' (value: 236) duplicated in CO field (value: 4626/10) -- ignoring CO value
2011-05-19 21:17:37,908 - WARNING - Found RG tag 'ID' (value: WTCHG_11734) duplicated in CO field (value: 4626/10) -- ignoring CO value
2011-05-19 21:17:37,917 - INFO - Reading data from BAM file WTCHG_11734.bam. All reads in file will be read
2011-05-19 21:17:37,967 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:2990013-23010013
2011-05-19 21:17:48,865 - INFO - Processed 100000 reads so far
2011-05-19 21:17:59,330 - INFO - Processed 200000 reads so far
2011-05-19 21:18:10,141 - INFO - Processed 300000 reads so far
2011-05-19 21:18:21,055 - INFO - Processed 400000 reads so far
2011-05-19 21:18:32,102 - INFO - Processed 500000 reads so far
2011-05-19 21:18:42,644 - INFO - Processed 600000 reads so far
2011-05-19 21:18:52,355 - INFO - Processed 700000 reads so far
2011-05-19 21:19:05,194 - INFO - Processed 800000 reads so far
2011-05-19 21:19:16,105 - INFO - Processed 900000 reads so far
2011-05-19 21:19:27,303 - INFO - Processed 1000000 reads so far
2011-05-19 21:19:37,874 - INFO - Processed 1100000 reads so far
2011-05-19 21:19:49,849 - INFO - Processed 1200000 reads so far
2011-05-19 21:19:51,754 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:22990015-43010015
2011-05-19 21:20:03,065 - INFO - Processed 1300000 reads so far
2011-05-19 21:20:13,566 - INFO - Processed 1400000 reads so far
2011-05-19 21:20:24,177 - INFO - Processed 1500000 reads so far
2011-05-19 21:20:38,424 - INFO - Processed 1600000 reads so far
2011-05-19 21:20:48,889 - INFO - Processed 1700000 reads so far
2011-05-19 21:20:59,110 - INFO - Processed 1800000 reads so far
2011-05-19 21:21:10,303 - INFO - Processed 1900000 reads so far
2011-05-19 21:21:22,575 - INFO - Processed 2000000 reads so far
2011-05-19 21:21:33,689 - INFO - Processed 2100000 reads so far
2011-05-19 21:21:44,957 - INFO - Processed 2200000 reads so far
2011-05-19 21:21:54,634 - INFO - Processed 2300000 reads so far
2011-05-19 21:22:06,798 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:42990019-63010019
2011-05-19 21:22:07,481 - INFO - Processed 2400000 reads so far
2011-05-19 21:22:16,644 - INFO - Processed 2500000 reads so far
2011-05-19 21:22:26,754 - INFO - Processed 2600000 reads so far
2011-05-19 21:22:38,593 - INFO - Processed 2700000 reads so far
2011-05-19 21:22:49,178 - INFO - Processed 2800000 reads so far
2011-05-19 21:23:00,028 - INFO - Processed 2900000 reads so far
2011-05-19 21:23:11,809 - INFO - Processed 3000000 reads so far
2011-05-19 21:23:24,529 - INFO - Processed 3100000 reads so far
2011-05-19 21:23:33,268 - INFO - Processed 3200000 reads so far
2011-05-19 21:23:44,856 - INFO - Processed 3300000 reads so far
2011-05-19 21:23:54,983 - INFO - Processed 3400000 reads so far
2011-05-19 21:24:05,959 - INFO - Processed 3500000 reads so far
2011-05-19 21:24:12,969 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:62990054-83010054
2011-05-19 21:24:15,842 - INFO - Processed 3600000 reads so far
2011-05-19 21:24:25,216 - INFO - Processed 3700000 reads so far
2011-05-19 21:24:37,015 - INFO - Processed 3800000 reads so far
2011-05-19 21:24:48,150 - INFO - Processed 3900000 reads so far
2011-05-19 21:24:59,941 - INFO - Processed 4000000 reads so far
2011-05-19 21:25:12,446 - INFO - Processed 4100000 reads so far
2011-05-19 21:25:22,951 - INFO - Processed 4200000 reads so far
2011-05-19 21:25:34,055 - INFO - Processed 4300000 reads so far
2011-05-19 21:25:44,850 - INFO - Processed 4400000 reads so far
2011-05-19 21:25:54,492 - INFO - Processed 4500000 reads so far
2011-05-19 21:26:04,796 - INFO - Processed 4600000 reads so far
2011-05-19 21:26:15,841 - INFO - Processed 4700000 reads so far
2011-05-19 21:26:20,745 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:82990061-103010061
2011-05-19 21:26:24,295 - INFO - Processed 4800000 reads so far
2011-05-19 21:26:32,871 - INFO - Processed 4900000 reads so far
2011-05-19 21:26:45,187 - INFO - Processed 5000000 reads so far
2011-05-19 21:26:56,529 - INFO - Processed 5100000 reads so far
2011-05-19 21:27:08,212 - INFO - Processed 5200000 reads so far
2011-05-19 21:27:19,556 - INFO - Processed 5300000 reads so far
2011-05-19 21:27:28,812 - INFO - Processed 5400000 reads so far
2011-05-19 21:27:39,909 - INFO - Processed 5500000 reads so far
2011-05-19 21:27:51,277 - INFO - Processed 5600000 reads so far
2011-05-19 21:28:02,585 - INFO - Processed 5700000 reads so far
2011-05-19 21:28:14,132 - INFO - Processed 5800000 reads so far
2011-05-19 21:28:25,748 - INFO - Processed 5900000 reads so far
2011-05-19 21:28:31,330 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:102990065-123010065
2011-05-19 21:28:36,871 - INFO - Processed 6000000 reads so far
2011-05-19 21:28:48,340 - INFO - Processed 6100000 reads so far
2011-05-19 21:29:01,088 - INFO - Processed 6200000 reads so far
2011-05-19 21:29:12,155 - INFO - Processed 6300000 reads so far
2011-05-19 21:29:25,175 - INFO - Processed 6400000 reads so far
2011-05-19 21:29:38,004 - INFO - Processed 6500000 reads so far
2011-05-19 21:29:49,227 - INFO - Processed 6600000 reads so far
2011-05-19 21:30:01,857 - INFO - Processed 6700000 reads so far
2011-05-19 21:30:13,125 - INFO - Processed 6800000 reads so far
2011-05-19 21:30:24,444 - INFO - Processed 6900000 reads so far
2011-05-19 21:30:35,644 - INFO - Processed 7000000 reads so far
2011-05-19 21:30:47,096 - INFO - Processed 7100000 reads so far
2011-05-19 21:30:49,088 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:122990066-143010066
2011-05-19 21:30:58,208 - INFO - Processed 7200000 reads so far
2011-05-19 21:31:12,254 - INFO - Processed 7300000 reads so far
2011-05-19 21:31:24,871 - INFO - Processed 7400000 reads so far
2011-05-19 21:31:37,066 - INFO - Processed 7500000 reads so far
2011-05-19 21:31:40,228 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:2990003-23010003
2011-05-19 21:31:49,471 - INFO - Processed 7600000 reads so far
2011-05-19 21:32:00,368 - INFO - Processed 7700000 reads so far
2011-05-19 21:32:09,255 - INFO - Processed 7800000 reads so far
2011-05-19 21:32:26,274 - INFO - Processed 7900000 reads so far
2011-05-19 21:32:37,774 - INFO - Processed 8000000 reads so far
2011-05-19 21:32:49,359 - INFO - Processed 8100000 reads so far
2011-05-19 21:33:00,537 - INFO - Processed 8200000 reads so far
2011-05-19 21:33:12,132 - INFO - Processed 8300000 reads so far
2011-05-19 21:33:23,946 - INFO - Processed 8400000 reads so far
2011-05-19 21:33:37,071 - INFO - Processed 8500000 reads so far
2011-05-19 21:33:48,383 - INFO - Processed 8600000 reads so far
2011-05-19 21:34:00,367 - INFO - Processed 8700000 reads so far
2011-05-19 21:34:14,649 - INFO - Processed 8800000 reads so far
2011-05-19 21:34:30,370 - INFO - Processed 8900000 reads so far
2011-05-19 21:34:32,370 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:22990033-43010033
2011-05-19 21:34:47,300 - INFO - Processed 9000000 reads so far
2011-05-19 21:34:56,552 - INFO - Processed 9100000 reads so far
2011-05-19 21:35:07,169 - INFO - Processed 9200000 reads so far
2011-05-19 21:35:15,499 - INFO - Processed 9300000 reads so far
2011-05-19 21:35:27,625 - INFO - Processed 9400000 reads so far
2011-05-19 21:35:38,713 - INFO - Processed 9500000 reads so far
2011-05-19 21:35:49,937 - INFO - Processed 9600000 reads so far
2011-05-19 21:36:04,766 - INFO - Processed 9700000 reads so far
2011-05-19 21:36:15,768 - INFO - Processed 9800000 reads so far
2011-05-19 21:36:24,823 - INFO - Processed 9900000 reads so far
2011-05-19 21:36:36,465 - INFO - Processed 10000000 reads so far
2011-05-19 21:36:46,732 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:42990040-63010040
2011-05-19 21:36:47,808 - INFO - Processed 10100000 reads so far
2011-05-19 21:37:00,392 - INFO - Processed 10200000 reads so far
2011-05-19 21:37:11,655 - INFO - Processed 10300000 reads so far
2011-05-19 21:37:22,953 - INFO - Processed 10400000 reads so far
2011-05-19 21:37:34,886 - INFO - Processed 10500000 reads so far
2011-05-19 21:37:44,662 - INFO - Processed 10600000 reads so far
2011-05-19 21:37:57,560 - INFO - Processed 10700000 reads so far
2011-05-19 21:38:08,837 - INFO - Processed 10800000 reads so far
2011-05-19 21:38:20,085 - INFO - Processed 10900000 reads so far
2011-05-19 21:38:30,962 - INFO - Processed 11000000 reads so far
2011-05-19 21:38:40,843 - INFO - Processed 11100000 reads so far
2011-05-19 21:38:54,457 - INFO - Processed 11200000 reads so far
2011-05-19 21:39:05,894 - INFO - Processed 11300000 reads so far
2011-05-19 21:39:07,636 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:62990058-83010058
2011-05-19 21:39:18,423 - INFO - Processed 11400000 reads so far
2011-05-19 21:39:29,990 - INFO - Processed 11500000 reads so far
2011-05-19 21:39:41,865 - INFO - Processed 11600000 reads so far
2011-05-19 21:39:53,398 - INFO - Processed 11700000 reads so far
2011-05-19 21:40:06,566 - INFO - Processed 11800000 reads so far
2011-05-19 21:40:18,515 - INFO - Processed 11900000 reads so far
2011-05-19 21:40:30,301 - INFO - Processed 12000000 reads so far
2011-05-19 21:40:40,948 - INFO - Processed 12100000 reads so far
2011-05-19 21:40:53,111 - INFO - Processed 12200000 reads so far
2011-05-19 21:41:05,560 - INFO - Processed 12300000 reads so far
2011-05-19 21:41:17,776 - INFO - Processed 12400000 reads so far
2011-05-19 21:41:30,724 - INFO - Processed 12500000 reads so far
2011-05-19 21:41:33,771 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:82990061-103010061
2011-05-19 21:41:40,543 - INFO - Processed 12600000 reads so far
2011-05-19 21:41:51,712 - INFO - Processed 12700000 reads so far
2011-05-19 21:42:03,045 - INFO - Processed 12800000 reads so far
2011-05-19 21:42:13,360 - INFO - Processed 12900000 reads so far
2011-05-19 21:42:25,449 - INFO - Processed 13000000 reads so far
2011-05-19 21:42:35,937 - INFO - Processed 13100000 reads so far
2011-05-19 21:42:46,513 - INFO - Processed 13200000 reads so far
2011-05-19 21:42:56,003 - INFO - Processed 13300000 reads so far
2011-05-19 21:43:06,299 - INFO - Processed 13400000 reads so far
2011-05-19 21:43:15,150 - INFO - Processed 13500000 reads so far
2011-05-19 21:43:24,849 - INFO - Processed 13600000 reads so far
2011-05-19 21:43:33,154 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:102990086-123010086
2011-05-19 21:43:33,515 - INFO - Processed 13700000 reads so far
2011-05-19 21:43:42,489 - INFO - Processed 13800000 reads so far
2011-05-19 21:43:53,013 - INFO - Processed 13900000 reads so far
2011-05-19 21:44:03,091 - INFO - Processed 14000000 reads so far
2011-05-19 21:44:13,512 - INFO - Processed 14100000 reads so far
2011-05-19 21:44:23,987 - INFO - Processed 14200000 reads so far
2011-05-19 21:44:35,172 - INFO - Processed 14300000 reads so far
2011-05-19 21:44:46,665 - INFO - Processed 14400000 reads so far
2011-05-19 21:44:55,450 - INFO - Processed 14500000 reads so far
2011-05-19 21:45:04,631 - INFO - Processed 14600000 reads so far
2011-05-19 21:45:15,782 - INFO - Processed 14700000 reads so far
2011-05-19 21:45:24,784 - INFO - Processed 14800000 reads so far
2011-05-19 21:45:29,125 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:2990021-23010021
2011-05-19 21:45:33,270 - INFO - Processed 14900000 reads so far
2011-05-19 21:45:40,596 - INFO - Processed 15000000 reads so far
2011-05-19 21:45:49,164 - INFO - Processed 15100000 reads so far
2011-05-19 21:45:58,750 - INFO - Processed 15200000 reads so far
2011-05-19 21:46:06,718 - INFO - Processed 15300000 reads so far
2011-05-19 21:46:15,558 - INFO - Processed 15400000 reads so far
2011-05-19 21:46:25,214 - INFO - Processed 15500000 reads so far
2011-05-19 21:46:35,611 - INFO - Processed 15600000 reads so far
2011-05-19 21:46:46,463 - INFO - Processed 15700000 reads so far
2011-05-19 21:46:57,656 - INFO - Processed 15800000 reads so far
2011-05-19 21:47:08,829 - INFO - Processed 15900000 reads so far
2011-05-19 21:47:20,545 - INFO - Processed 16000000 reads so far
2011-05-19 21:47:31,115 - INFO - Processed 16100000 reads so far
2011-05-19 21:47:37,826 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:22990126-43010126
2011-05-19 21:47:41,735 - INFO - Processed 16200000 reads so far
2011-05-19 21:47:51,193 - INFO - Processed 16300000 reads so far
2011-05-19 21:47:59,881 - INFO - Processed 16400000 reads so far
2011-05-19 21:48:09,943 - INFO - Processed 16500000 reads so far
2011-05-19 21:48:20,326 - INFO - Processed 16600000 reads so far
2011-05-19 21:48:30,768 - INFO - Processed 16700000 reads so far
2011-05-19 21:48:41,781 - INFO - Processed 16800000 reads so far
2011-05-19 21:48:52,293 - INFO - Processed 16900000 reads so far
2011-05-19 21:49:03,375 - INFO - Processed 17000000 reads so far
2011-05-19 21:49:14,989 - INFO - Processed 17100000 reads so far
2011-05-19 21:49:25,447 - INFO - Processed 17200000 reads so far
2011-05-19 21:49:33,359 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:42990140-63010140
2011-05-19 21:49:36,802 - INFO - Processed 17300000 reads so far
2011-05-19 21:49:48,433 - INFO - Processed 17400000 reads so far
2011-05-19 21:50:01,248 - INFO - Processed 17500000 reads so far
2011-05-19 21:50:10,328 - INFO - Processed 17600000 reads so far
2011-05-19 21:50:19,592 - INFO - Processed 17700000 reads so far
2011-05-19 21:50:29,715 - INFO - Processed 17800000 reads so far
2011-05-19 21:50:39,223 - INFO - Processed 17900000 reads so far
2011-05-19 21:50:48,976 - INFO - Processed 18000000 reads so far
2011-05-19 21:50:59,746 - INFO - Processed 18100000 reads so far
2011-05-19 21:51:08,840 - INFO - Processed 18200000 reads so far
2011-05-19 21:51:18,559 - INFO - Processed 18300000 reads so far
2011-05-19 21:51:28,606 - INFO - Processed 18400000 reads so far
2011-05-19 21:51:30,132 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:62990162-83010162
2011-05-19 21:51:39,393 - INFO - Processed 18500000 reads so far
2011-05-19 21:51:51,124 - INFO - Processed 18600000 reads so far
2011-05-19 21:52:02,789 - INFO - Processed 18700000 reads so far
2011-05-19 21:52:11,785 - INFO - Processed 18800000 reads so far
2011-05-19 21:52:21,677 - INFO - Processed 18900000 reads so far
2011-05-19 21:52:32,901 - INFO - Processed 19000000 reads so far
2011-05-19 21:52:44,432 - INFO - Processed 19100000 reads so far
2011-05-19 21:52:55,177 - INFO - Processed 19200000 reads so far
2011-05-19 21:53:06,387 - INFO - Processed 19300000 reads so far
2011-05-19 21:53:15,747 - INFO - Processed 19400000 reads so far
2011-05-19 21:53:25,022 - INFO - Processed 19500000 reads so far
2011-05-19 21:53:32,251 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:82990178-103010178
2011-05-19 21:53:32,840 - INFO - Processed 19600000 reads so far
2011-05-19 21:53:43,997 - INFO - Processed 19700000 reads so far
2011-05-19 21:53:52,579 - INFO - Processed 19800000 reads so far
2011-05-19 21:54:01,442 - INFO - Processed 19900000 reads so far
2011-05-19 21:54:11,819 - INFO - Processed 20000000 reads so far
2011-05-19 21:54:22,411 - INFO - Processed 20100000 reads so far
2011-05-19 21:54:32,906 - INFO - Processed 20200000 reads so far
2011-05-19 21:54:44,046 - INFO - Processed 20300000 reads so far
2011-05-19 21:54:55,177 - INFO - Processed 20400000 reads so far
2011-05-19 21:55:05,602 - INFO - Processed 20500000 reads so far
2011-05-19 21:55:16,377 - INFO - Processed 20600000 reads so far
2011-05-19 21:55:26,162 - INFO - Processed 20700000 reads so far
2011-05-19 21:55:33,367 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:102990179-123010179
2011-05-19 21:55:36,702 - INFO - Processed 20800000 reads so far
2011-05-19 21:55:47,393 - INFO - Processed 20900000 reads so far
2011-05-19 21:55:57,753 - INFO - Processed 21000000 reads so far
2011-05-19 21:56:09,768 - INFO - Processed 21100000 reads so far
2011-05-19 21:56:19,063 - INFO - Processed 21200000 reads so far
2011-05-19 21:56:32,587 - INFO - Processed 21300000 reads so far
2011-05-19 21:56:41,315 - INFO - Processed 21400000 reads so far
2011-05-19 21:56:54,579 - INFO - Processed 21500000 reads so far
2011-05-19 21:57:05,575 - INFO - Processed 21600000 reads so far
2011-05-19 21:57:16,663 - INFO - Processed 21700000 reads so far
2011-05-19 21:57:31,562 - INFO - Processed 21800000 reads so far
2011-05-19 21:57:43,307 - INFO - Processed 21900000 reads so far
2011-05-19 21:57:45,127 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:2990045-23010045
2011-05-19 21:57:57,696 - INFO - Processed 22000000 reads so far
2011-05-19 21:58:07,649 - INFO - Processed 22100000 reads so far
2011-05-19 21:58:18,513 - INFO - Processed 22200000 reads so far
2011-05-19 21:58:29,223 - INFO - Processed 22300000 reads so far
2011-05-19 21:58:39,701 - INFO - Processed 22400000 reads so far
2011-05-19 21:58:50,379 - INFO - Processed 22500000 reads so far
2011-05-19 21:59:00,410 - INFO - Processed 22600000 reads so far
2011-05-19 21:59:11,660 - INFO - Processed 22700000 reads so far
2011-05-19 21:59:21,761 - INFO - Processed 22800000 reads so far
2011-05-19 21:59:34,353 - INFO - Processed 22900000 reads so far
2011-05-19 21:59:45,729 - INFO - Processed 23000000 reads so far
2011-05-19 21:59:53,172 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:22990066-43010066
2011-05-19 21:59:57,246 - INFO - Processed 23100000 reads so far
2011-05-19 22:00:09,990 - INFO - Processed 23200000 reads so far
2011-05-19 22:00:23,517 - INFO - Processed 23300000 reads so far
2011-05-19 22:00:34,636 - INFO - Processed 23400000 reads so far
2011-05-19 22:00:45,040 - INFO - Processed 23500000 reads so far
2011-05-19 22:00:56,821 - INFO - Processed 23600000 reads so far
2011-05-19 22:01:07,285 - INFO - Processed 23700000 reads so far
2011-05-19 22:01:18,219 - INFO - Processed 23800000 reads so far
2011-05-19 22:01:29,013 - INFO - Processed 23900000 reads so far
2011-05-19 22:01:39,190 - INFO - Processed 24000000 reads so far
2011-05-19 22:01:51,047 - INFO - Processed 24100000 reads so far
2011-05-19 22:02:00,543 - INFO - Processed 24200000 reads so far
2011-05-19 22:02:06,589 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:42990085-63010085
2011-05-19 22:02:09,082 - INFO - Processed 24300000 reads so far
2011-05-19 22:02:17,498 - INFO - Processed 24400000 reads so far
2011-05-19 22:02:26,029 - INFO - Processed 24500000 reads so far
2011-05-19 22:02:34,703 - INFO - Processed 24600000 reads so far
2011-05-19 22:02:44,764 - INFO - Processed 24700000 reads so far
2011-05-19 22:02:52,553 - INFO - Processed 24800000 reads so far
2011-05-19 22:03:01,096 - INFO - Processed 24900000 reads so far
2011-05-19 22:03:10,711 - INFO - Processed 25000000 reads so far
2011-05-19 22:03:19,453 - INFO - Processed 25100000 reads so far
2011-05-19 22:03:29,404 - INFO - Processed 25200000 reads so far
2011-05-19 22:03:37,973 - INFO - Processed 25300000 reads so far
2011-05-19 22:03:47,294 - INFO - Processed 25400000 reads so far
2011-05-19 22:03:55,274 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:62990114-83010114
2011-05-19 22:03:55,537 - INFO - Processed 25500000 reads so far
2011-05-19 22:04:06,795 - INFO - Processed 25600000 reads so far
2011-05-19 22:04:16,094 - INFO - Processed 25700000 reads so far
2011-05-19 22:04:23,847 - INFO - Processed 25800000 reads so far
2011-05-19 22:04:37,161 - INFO - Processed 25900000 reads so far
2011-05-19 22:04:49,081 - INFO - Processed 26000000 reads so far
2011-05-19 22:05:00,302 - INFO - Processed 26100000 reads so far
2011-05-19 22:05:11,693 - INFO - Processed 26200000 reads so far
2011-05-19 22:05:22,164 - INFO - Processed 26300000 reads so far
2011-05-19 22:05:33,004 - INFO - Processed 26400000 reads so far
2011-05-19 22:05:42,617 - INFO - Processed 26500000 reads so far
2011-05-19 22:05:52,850 - INFO - Processed 26600000 reads so far
2011-05-19 22:05:59,281 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:82990117-103010117
2011-05-19 22:06:02,123 - INFO - Processed 26700000 reads so far
2011-05-19 22:06:11,591 - INFO - Processed 26800000 reads so far
2011-05-19 22:06:20,875 - INFO - Processed 26900000 reads so far
2011-05-19 22:06:32,410 - INFO - Processed 27000000 reads so far
2011-05-19 22:06:40,494 - INFO - Processed 27100000 reads so far
2011-05-19 22:06:49,213 - INFO - Processed 27200000 reads so far
2011-05-19 22:07:00,895 - INFO - Processed 27300000 reads so far
2011-05-19 22:07:12,660 - INFO - Processed 27400000 reads so far
2011-05-19 22:07:22,365 - INFO - Processed 27500000 reads so far
2011-05-19 22:07:31,504 - INFO - Processed 27600000 reads so far
2011-05-19 22:07:43,575 - INFO - Processed 27700000 reads so far
2011-05-19 22:07:52,850 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:102990120-123010120
2011-05-19 22:07:53,031 - INFO - Processed 27800000 reads so far
2011-05-19 22:08:02,460 - INFO - Processed 27900000 reads so far
2011-05-19 22:08:13,154 - INFO - Processed 28000000 reads so far
2011-05-19 22:08:21,183 - INFO - Processed 28100000 reads so far
2011-05-19 22:08:33,767 - INFO - Processed 28200000 reads so far
2011-05-19 22:08:43,433 - INFO - Processed 28300000 reads so far
2011-05-19 22:08:53,016 - INFO - Processed 28400000 reads so far
2011-05-19 22:09:04,170 - INFO - Processed 28500000 reads so far
2011-05-19 22:09:28,655 - INFO - Processed 28600000 reads so far
2011-05-19 22:09:49,459 - INFO - Processed 28700000 reads so far
2011-05-19 22:10:00,644 - INFO - Processed 28800000 reads so far
2011-05-19 22:10:02,858 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13_random:0-20010000
2011-05-19 22:10:04,207 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:2990023-23010023
2011-05-19 22:10:11,427 - INFO - Processed 28900000 reads so far
2011-05-19 22:10:22,563 - INFO - Processed 29000000 reads so far
2011-05-19 22:10:33,520 - INFO - Processed 29100000 reads so far
2011-05-19 22:10:44,613 - INFO - Processed 29200000 reads so far
2011-05-19 22:10:55,801 - INFO - Processed 29300000 reads so far
2011-05-19 22:11:03,568 - INFO - Processed 29400000 reads so far
2011-05-19 22:11:13,917 - INFO - Processed 29500000 reads so far
2011-05-19 22:11:22,054 - INFO - Processed 29600000 reads so far
2011-05-19 22:11:30,734 - INFO - Processed 29700000 reads so far
2011-05-19 22:11:40,764 - INFO - Processed 29800000 reads so far
2011-05-19 22:11:48,578 - INFO - Processed 29900000 reads so far
2011-05-19 22:11:57,084 - INFO - Processed 30000000 reads so far
2011-05-19 22:11:58,808 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:22990037-43010037
2011-05-19 22:12:05,303 - INFO - Processed 30100000 reads so far
2011-05-19 22:12:13,524 - INFO - Processed 30200000 reads so far
2011-05-19 22:12:24,509 - INFO - Processed 30300000 reads so far
2011-05-19 22:12:32,334 - INFO - Processed 30400000 reads so far
2011-05-19 22:12:40,270 - INFO - Processed 30500000 reads so far
2011-05-19 22:12:49,473 - INFO - Processed 30600000 reads so far
2011-05-19 22:12:58,069 - INFO - Processed 30700000 reads so far
2011-05-19 22:13:06,534 - INFO - Processed 30800000 reads so far
2011-05-19 22:13:18,341 - INFO - Processed 30900000 reads so far
2011-05-19 22:13:27,838 - INFO - Processed 31000000 reads so far
2011-05-19 22:13:36,994 - INFO - Processed 31100000 reads so far
2011-05-19 22:13:45,356 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:42990050-63010050
2011-05-19 22:13:45,641 - INFO - Processed 31200000 reads so far
2011-05-19 22:13:54,392 - INFO - Processed 31300000 reads so far
2011-05-19 22:14:02,314 - INFO - Processed 31400000 reads so far
2011-05-19 22:14:11,889 - INFO - Processed 31500000 reads so far
2011-05-19 22:14:20,229 - INFO - Processed 31600000 reads so far
2011-05-19 22:14:28,311 - INFO - Processed 31700000 reads so far
2011-05-19 22:14:37,040 - INFO - Processed 31800000 reads so far
2011-05-19 22:14:44,377 - INFO - Processed 31900000 reads so far
2011-05-19 22:14:52,764 - INFO - Processed 32000000 reads so far
2011-05-19 22:15:03,356 - INFO - Processed 32100000 reads so far
2011-05-19 22:15:14,625 - INFO - Processed 32200000 reads so far
2011-05-19 22:15:25,248 - INFO - Processed 32300000 reads so far
2011-05-19 22:15:36,131 - INFO - Processed 32400000 reads so far
2011-05-19 22:15:39,494 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:62990057-83010057
2011-05-19 22:15:48,362 - INFO - Processed 32500000 reads so far
2011-05-19 22:15:59,945 - INFO - Processed 32600000 reads so far
2011-05-19 22:16:10,702 - INFO - Processed 32700000 reads so far
2011-05-19 22:16:22,211 - INFO - Processed 32800000 reads so far
2011-05-19 22:16:31,513 - INFO - Processed 32900000 reads so far
2011-05-19 22:16:41,840 - INFO - Processed 33000000 reads so far
2011-05-19 22:16:51,339 - INFO - Processed 33100000 reads so far
2011-05-19 22:17:00,349 - INFO - Processed 33200000 reads so far
2011-05-19 22:17:09,586 - INFO - Processed 33300000 reads so far
2011-05-19 22:17:18,700 - INFO - Processed 33400000 reads so far
2011-05-19 22:17:26,417 - INFO - Processed 33500000 reads so far
2011-05-19 22:17:36,730 - INFO - Processed 33600000 reads so far
2011-05-19 22:17:41,753 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:82990123-103010123
2011-05-19 22:17:46,564 - INFO - Processed 33700000 reads so far
2011-05-19 22:17:55,841 - INFO - Processed 33800000 reads so far
2011-05-19 22:18:05,935 - INFO - Processed 33900000 reads so far
2011-05-19 22:18:16,181 - INFO - Processed 34000000 reads so far
2011-05-19 22:18:25,316 - INFO - Processed 34100000 reads so far
2011-05-19 22:18:35,104 - INFO - Processed 34200000 reads so far
2011-05-19 22:18:45,167 - INFO - Processed 34300000 reads so far
2011-05-19 22:18:55,987 - INFO - Processed 34400000 reads so far
2011-05-19 22:19:04,127 - INFO - Processed 34500000 reads so far
2011-05-19 22:19:14,325 - INFO - Processed 34600000 reads so far
2011-05-19 22:19:23,556 - INFO - Processed 34700000 reads so far
2011-05-19 22:19:27,494 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:102990159-123010159
2011-05-19 22:19:32,671 - INFO - Processed 34800000 reads so far
2011-05-19 22:19:42,007 - INFO - Processed 34900000 reads so far
2011-05-19 22:19:53,188 - INFO - Processed 35000000 reads so far
2011-05-19 22:20:02,744 - INFO - Processed 35100000 reads so far
2011-05-19 22:20:12,430 - INFO - Processed 35200000 reads so far
2011-05-19 22:20:20,908 - INFO - Processed 35300000 reads so far
2011-05-19 22:20:29,649 - INFO - Processed 35400000 reads so far
2011-05-19 22:20:37,551 - INFO - Processed 35500000 reads so far
2011-05-19 22:20:46,326 - INFO - Processed 35600000 reads so far
2011-05-19 22:20:55,641 - INFO - Processed 35700000 reads so far
2011-05-19 22:21:03,749 - INFO - Processed 35800000 reads so far
2011-05-19 22:21:11,907 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:122990201-143010201
2011-05-19 22:21:13,371 - INFO - Processed 35900000 reads so far
2011-05-19 22:21:22,817 - INFO - Processed 36000000 reads so far
2011-05-19 22:21:23,241 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:2990006-23010006
2011-05-19 22:21:33,664 - INFO - Processed 36100000 reads so far
2011-05-19 22:21:44,681 - INFO - Processed 36200000 reads so far
2011-05-19 22:21:54,205 - INFO - Processed 36300000 reads so far
2011-05-19 22:22:04,428 - INFO - Processed 36400000 reads so far
2011-05-19 22:22:13,765 - INFO - Processed 36500000 reads so far
2011-05-19 22:22:25,325 - INFO - Processed 36600000 reads so far
2011-05-19 22:22:36,229 - INFO - Processed 36700000 reads so far
2011-05-19 22:22:47,792 - INFO - Processed 36800000 reads so far
2011-05-19 22:22:58,675 - INFO - Processed 36900000 reads so far
2011-05-19 22:23:09,846 - INFO - Processed 37000000 reads so far
2011-05-19 22:23:21,984 - INFO - Processed 37100000 reads so far
2011-05-19 22:23:25,981 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:22990027-43010027
2011-05-19 22:23:30,516 - INFO - Processed 37200000 reads so far
2011-05-19 22:23:39,154 - INFO - Processed 37300000 reads so far
2011-05-19 22:23:48,789 - INFO - Processed 37400000 reads so far
2011-05-19 22:24:04,782 - INFO - Processed 37500000 reads so far
2011-05-19 22:24:14,532 - INFO - Processed 37600000 reads so far
2011-05-19 22:24:23,755 - INFO - Processed 37700000 reads so far
2011-05-19 22:24:33,550 - INFO - Processed 37800000 reads so far
2011-05-19 22:24:44,543 - INFO - Processed 37900000 reads so far
2011-05-19 22:24:56,039 - INFO - Processed 38000000 reads so far
2011-05-19 22:25:06,851 - INFO - Processed 38100000 reads so far
2011-05-19 22:25:16,786 - INFO - Processed 38200000 reads so far
2011-05-19 22:25:28,147 - INFO - Processed 38300000 reads so far
2011-05-19 22:25:31,504 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:42990035-63010035
2011-05-19 22:25:39,374 - INFO - Processed 38400000 reads so far
2011-05-19 22:25:48,298 - INFO - Processed 38500000 reads so far
2011-05-19 22:25:58,454 - INFO - Processed 38600000 reads so far
2011-05-19 22:26:07,551 - INFO - Processed 38700000 reads so far
2011-05-19 22:26:17,159 - INFO - Processed 38800000 reads so far
2011-05-19 22:26:26,358 - INFO - Processed 38900000 reads so far
2011-05-19 22:26:34,578 - INFO - Processed 39000000 reads so far
2011-05-19 22:26:47,374 - INFO - Processed 39100000 reads so far
2011-05-19 22:26:58,364 - INFO - Processed 39200000 reads so far
2011-05-19 22:27:07,465 - INFO - Processed 39300000 reads so far
2011-05-19 22:27:17,481 - INFO - Processed 39400000 reads so far
2011-05-19 22:27:24,974 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:62990070-83010070
2011-05-19 22:27:26,044 - INFO - Processed 39500000 reads so far
2011-05-19 22:27:37,981 - INFO - Processed 39600000 reads so far
2011-05-19 22:27:48,906 - INFO - Processed 39700000 reads so far
2011-05-19 22:28:00,247 - INFO - Processed 39800000 reads so far
2011-05-19 22:28:12,069 - INFO - Processed 39900000 reads so far
2011-05-19 22:28:22,669 - INFO - Processed 40000000 reads so far
2011-05-19 22:28:31,917 - INFO - Processed 40100000 reads so far
2011-05-19 22:28:39,936 - INFO - Processed 40200000 reads so far
2011-05-19 22:28:47,291 - INFO - Processed 40300000 reads so far
2011-05-19 22:28:59,243 - INFO - Processed 40400000 reads so far
2011-05-19 22:29:07,600 - INFO - Processed 40500000 reads so far
2011-05-19 22:29:16,441 - INFO - Processed 40600000 reads so far
2011-05-19 22:29:24,620 - INFO - Processed 40700000 reads so far
2011-05-19 22:29:26,902 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:82990119-103010119
2011-05-19 22:29:36,300 - INFO - Processed 40800000 reads so far
2011-05-19 22:29:44,709 - INFO - Processed 40900000 reads so far
2011-05-19 22:29:52,917 - INFO - Processed 41000000 reads so far
2011-05-19 22:30:02,520 - INFO - Processed 41100000 reads so far
2011-05-19 22:30:13,373 - INFO - Processed 41200000 reads so far
2011-05-19 22:30:21,855 - INFO - Processed 41300000 reads so far
2011-05-19 22:30:31,235 - INFO - Processed 41400000 reads so far
2011-05-19 22:30:40,010 - INFO - Processed 41500000 reads so far
2011-05-19 22:30:50,258 - INFO - Processed 41600000 reads so far
2011-05-19 22:31:00,750 - INFO - Processed 41700000 reads so far
2011-05-19 22:31:15,614 - INFO - Processed 41800000 reads so far
2011-05-19 22:31:26,218 - INFO - Processed 41900000 reads so far
2011-05-19 22:31:30,466 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:102990139-123010139
2011-05-19 22:31:32,474 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:2990003-23010003
2011-05-19 22:31:35,197 - INFO - Processed 42000000 reads so far
2011-05-19 22:31:43,527 - INFO - Processed 42100000 reads so far
2011-05-19 22:31:52,996 - INFO - Processed 42200000 reads so far
2011-05-19 22:32:01,129 - INFO - Processed 42300000 reads so far
2011-05-19 22:32:08,746 - INFO - Processed 42400000 reads so far
2011-05-19 22:32:16,460 - INFO - Processed 42500000 reads so far
2011-05-19 22:32:25,644 - INFO - Processed 42600000 reads so far
2011-05-19 22:32:35,327 - INFO - Processed 42700000 reads so far
2011-05-19 22:32:44,908 - INFO - Processed 42800000 reads so far
2011-05-19 22:32:53,596 - INFO - Processed 42900000 reads so far
2011-05-19 22:33:01,817 - INFO - Processed 43000000 reads so far
2011-05-19 22:33:11,489 - INFO - Processed 43100000 reads so far
2011-05-19 22:33:20,395 - INFO - Processed 43200000 reads so far
2011-05-19 22:33:23,284 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:22990031-43010031
2011-05-19 22:33:29,713 - INFO - Processed 43300000 reads so far
2011-05-19 22:33:38,564 - INFO - Processed 43400000 reads so far
2011-05-19 22:33:50,943 - INFO - Processed 43500000 reads so far
2011-05-19 22:33:59,332 - INFO - Processed 43600000 reads so far
2011-05-19 22:34:07,948 - INFO - Processed 43700000 reads so far
2011-05-19 22:34:17,130 - INFO - Processed 43800000 reads so far
2011-05-19 22:34:25,579 - INFO - Processed 43900000 reads so far
2011-05-19 22:34:34,486 - INFO - Processed 44000000 reads so far
2011-05-19 22:34:43,803 - INFO - Processed 44100000 reads so far
2011-05-19 22:34:51,447 - INFO - Processed 44200000 reads so far
2011-05-19 22:34:59,382 - INFO - Processed 44300000 reads so far
2011-05-19 22:35:06,491 - INFO - Processed 44400000 reads so far
2011-05-19 22:35:08,408 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:42990051-63010051
2011-05-19 22:35:16,345 - INFO - Processed 44500000 reads so far
2011-05-19 22:35:28,185 - INFO - Processed 44600000 reads so far
2011-05-19 22:35:36,848 - INFO - Processed 44700000 reads so far
2011-05-19 22:35:45,678 - INFO - Processed 44800000 reads so far
2011-05-19 22:35:54,668 - INFO - Processed 44900000 reads so far
2011-05-19 22:36:05,546 - INFO - Processed 45000000 reads so far
2011-05-19 22:36:17,177 - INFO - Processed 45100000 reads so far
2011-05-19 22:36:27,001 - INFO - Processed 45200000 reads so far
2011-05-19 22:36:35,497 - INFO - Processed 45300000 reads so far
2011-05-19 22:36:46,870 - INFO - Processed 45400000 reads so far
2011-05-19 22:36:54,585 - INFO - Processed 45500000 reads so far
2011-05-19 22:37:02,939 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:62990071-83010071
2011-05-19 22:37:04,899 - INFO - Processed 45600000 reads so far
2011-05-19 22:37:14,446 - INFO - Processed 45700000 reads so far
2011-05-19 22:37:24,452 - INFO - Processed 45800000 reads so far
2011-05-19 22:37:32,247 - INFO - Processed 45900000 reads so far
2011-05-19 22:37:40,608 - INFO - Processed 46000000 reads so far
2011-05-19 22:37:49,787 - INFO - Processed 46100000 reads so far
2011-05-19 22:37:58,750 - INFO - Processed 46200000 reads so far
2011-05-19 22:38:07,028 - INFO - Processed 46300000 reads so far
2011-05-19 22:38:20,077 - INFO - Processed 46400000 reads so far
2011-05-19 22:38:30,026 - INFO - Processed 46500000 reads so far
2011-05-19 22:38:39,477 - INFO - Processed 46600000 reads so far
2011-05-19 22:38:51,006 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:82990106-103010106
2011-05-19 22:38:52,467 - INFO - Processed 46700000 reads so far
2011-05-19 22:39:03,242 - INFO - Processed 46800000 reads so far
2011-05-19 22:39:14,255 - INFO - Processed 46900000 reads so far
2011-05-19 22:39:24,547 - INFO - Processed 47000000 reads so far
2011-05-19 22:39:35,385 - INFO - Processed 47100000 reads so far
2011-05-19 22:39:43,702 - INFO - Processed 47200000 reads so far
2011-05-19 22:39:53,185 - INFO - Processed 47300000 reads so far
2011-05-19 22:40:04,570 - INFO - Processed 47400000 reads so far
2011-05-19 22:40:16,507 - INFO - Processed 47500000 reads so far
2011-05-19 22:40:26,469 - INFO - Processed 47600000 reads so far
2011-05-19 22:40:27,498 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16_random:0-20010084
2011-05-19 22:40:27,532 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:2989988-23009988
2011-05-19 22:40:34,577 - INFO - Processed 47700000 reads so far
2011-05-19 22:40:44,306 - INFO - Processed 47800000 reads so far
2011-05-19 22:40:55,455 - INFO - Processed 47900000 reads so far
2011-05-19 22:41:05,482 - INFO - Processed 48000000 reads so far
2011-05-19 22:41:15,235 - INFO - Processed 48100000 reads so far
2011-05-19 22:41:27,799 - INFO - Processed 48200000 reads so far
2011-05-19 22:41:36,942 - INFO - Processed 48300000 reads so far
2011-05-19 22:41:46,815 - INFO - Processed 48400000 reads so far
2011-05-19 22:41:55,401 - INFO - Processed 48500000 reads so far
2011-05-19 22:42:04,670 - INFO - Processed 48600000 reads so far
2011-05-19 22:42:13,070 - INFO - Processed 48700000 reads so far
2011-05-19 22:42:23,364 - INFO - Processed 48800000 reads so far
2011-05-19 22:42:27,702 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:22990000-43010000
2011-05-19 22:42:32,351 - INFO - Processed 48900000 reads so far
2011-05-19 22:42:44,061 - INFO - Processed 49000000 reads so far
2011-05-19 22:42:53,968 - INFO - Processed 49100000 reads so far
2011-05-19 22:43:05,590 - INFO - Processed 49200000 reads so far
2011-05-19 22:43:17,457 - INFO - Processed 49300000 reads so far
2011-05-19 22:43:28,625 - INFO - Processed 49400000 reads so far
2011-05-19 22:43:40,146 - INFO - Processed 49500000 reads so far
2011-05-19 22:43:52,365 - INFO - Processed 49600000 reads so far
2011-05-19 22:44:05,147 - INFO - Processed 49700000 reads so far
2011-05-19 22:44:16,560 - INFO - Processed 49800000 reads so far
2011-05-19 22:44:28,390 - INFO - Processed 49900000 reads so far
2011-05-19 22:44:39,612 - INFO - Processed 50000000 reads so far
2011-05-19 22:44:51,965 - INFO - Processed 50100000 reads so far
2011-05-19 22:45:01,296 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:42990016-63010016
2011-05-19 22:45:13,119 - INFO - Processed 50200000 reads so far
2011-05-19 22:45:24,264 - INFO - Processed 50300000 reads so far
2011-05-19 22:45:38,292 - INFO - Processed 50400000 reads so far
2011-05-19 22:45:46,610 - INFO - Processed 50500000 reads so far
2011-05-19 22:45:54,612 - INFO - Processed 50600000 reads so far
2011-05-19 22:46:02,622 - INFO - Processed 50700000 reads so far
2011-05-19 22:46:15,036 - INFO - Processed 50800000 reads so far
2011-05-19 22:46:28,005 - INFO - Processed 50900000 reads so far
2011-05-19 22:46:37,272 - INFO - Processed 51000000 reads so far
2011-05-19 22:46:50,805 - INFO - Processed 51100000 reads so far
2011-05-19 22:47:01,146 - INFO - Processed 51200000 reads so far
2011-05-19 22:47:11,804 - INFO - Processed 51300000 reads so far
2011-05-19 22:47:13,283 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:62990047-83010047
2011-05-19 22:47:21,774 - INFO - Processed 51400000 reads so far
2011-05-19 22:47:32,553 - INFO - Processed 51500000 reads so far
2011-05-19 22:47:42,596 - INFO - Processed 51600000 reads so far
2011-05-19 22:47:51,796 - INFO - Processed 51700000 reads so far
2011-05-19 22:47:59,514 - INFO - Processed 51800000 reads so far
2011-05-19 22:48:10,763 - INFO - Processed 51900000 reads so far
2011-05-19 22:48:21,313 - INFO - Processed 52000000 reads so far
2011-05-19 22:48:31,178 - INFO - Processed 52100000 reads so far
2011-05-19 22:48:43,025 - INFO - Processed 52200000 reads so far
2011-05-19 22:48:51,565 - INFO - Processed 52300000 reads so far
2011-05-19 22:49:00,797 - INFO - Processed 52400000 reads so far
2011-05-19 22:49:09,896 - INFO - Processed 52500000 reads so far
2011-05-19 22:49:10,045 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:82990106-103010106
2011-05-19 22:49:18,795 - INFO - Processed 52600000 reads so far
2011-05-19 22:49:31,431 - INFO - Processed 52700000 reads so far
2011-05-19 22:49:39,349 - INFO - Processed 52800000 reads so far
2011-05-19 22:49:49,120 - INFO - Processed 52900000 reads so far
2011-05-19 22:49:58,660 - INFO - Processed 53000000 reads so far
2011-05-19 22:50:06,803 - INFO - Processed 53100000 reads so far
2011-05-19 22:50:14,695 - INFO - Processed 53200000 reads so far
2011-05-19 22:50:16,371 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17_random:0-20010045
2011-05-19 22:50:17,621 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:2989997-23009997
2011-05-19 22:50:24,206 - INFO - Processed 53300000 reads so far
2011-05-19 22:50:33,796 - INFO - Processed 53400000 reads so far
2011-05-19 22:50:43,812 - INFO - Processed 53500000 reads so far
2011-05-19 22:50:52,228 - INFO - Processed 53600000 reads so far
2011-05-19 22:51:00,444 - INFO - Processed 53700000 reads so far
2011-05-19 22:51:09,867 - INFO - Processed 53800000 reads so far
2011-05-19 22:51:18,519 - INFO - Processed 53900000 reads so far
2011-05-19 22:51:28,783 - INFO - Processed 54000000 reads so far
2011-05-19 22:51:39,833 - INFO - Processed 54100000 reads so far
2011-05-19 22:51:49,239 - INFO - Processed 54200000 reads so far
2011-05-19 22:51:59,106 - INFO - Processed 54300000 reads so far
2011-05-19 22:52:11,610 - INFO - Processed 54400000 reads so far
2011-05-19 22:52:18,468 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:22990009-43010009
2011-05-19 22:52:22,751 - INFO - Processed 54500000 reads so far
2011-05-19 22:52:33,853 - INFO - Processed 54600000 reads so far
2011-05-19 22:52:45,034 - INFO - Processed 54700000 reads so far
2011-05-19 22:52:56,977 - INFO - Processed 54800000 reads so far
2011-05-19 22:53:07,108 - INFO - Processed 54900000 reads so far
2011-05-19 22:53:15,326 - INFO - Processed 55000000 reads so far
2011-05-19 22:53:24,453 - INFO - Processed 55100000 reads so far
2011-05-19 22:53:32,150 - INFO - Processed 55200000 reads so far
2011-05-19 22:53:40,326 - INFO - Processed 55300000 reads so far
2011-05-19 22:53:50,210 - INFO - Processed 55400000 reads so far
2011-05-19 22:53:59,394 - INFO - Processed 55500000 reads so far
2011-05-19 22:54:07,508 - INFO - Processed 55600000 reads so far
2011-05-19 22:54:12,525 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:42990032-63010032
2011-05-19 22:54:15,826 - INFO - Processed 55700000 reads so far
2011-05-19 22:54:25,723 - INFO - Processed 55800000 reads so far
2011-05-19 22:54:35,084 - INFO - Processed 55900000 reads so far
2011-05-19 22:54:44,435 - INFO - Processed 56000000 reads so far
2011-05-19 22:54:52,807 - INFO - Processed 56100000 reads so far
2011-05-19 22:55:01,339 - INFO - Processed 56200000 reads so far
2011-05-19 22:55:10,663 - INFO - Processed 56300000 reads so far
2011-05-19 22:55:19,509 - INFO - Processed 56400000 reads so far
2011-05-19 22:55:31,030 - INFO - Processed 56500000 reads so far
2011-05-19 22:55:39,864 - INFO - Processed 56600000 reads so far
2011-05-19 22:55:48,890 - INFO - Processed 56700000 reads so far
2011-05-19 22:55:58,605 - INFO - Processed 56800000 reads so far
2011-05-19 22:56:02,130 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:62990038-83010038
2011-05-19 22:56:09,376 - INFO - Processed 56900000 reads so far
2011-05-19 22:56:18,820 - INFO - Processed 57000000 reads so far
2011-05-19 22:56:27,717 - INFO - Processed 57100000 reads so far
2011-05-19 22:56:37,866 - INFO - Processed 57200000 reads so far
2011-05-19 22:56:47,896 - INFO - Processed 57300000 reads so far
2011-05-19 22:56:57,092 - INFO - Processed 57400000 reads so far
2011-05-19 22:57:10,184 - INFO - Processed 57500000 reads so far
2011-05-19 22:57:19,308 - INFO - Processed 57600000 reads so far
2011-05-19 22:57:29,431 - INFO - Processed 57700000 reads so far
2011-05-19 22:57:41,810 - INFO - Processed 57800000 reads so far
2011-05-19 22:57:53,614 - INFO - Processed 57900000 reads so far
2011-05-19 22:58:06,183 - INFO - Processed 58000000 reads so far
2011-05-19 22:58:10,467 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:82990042-103010042
2011-05-19 22:58:17,434 - INFO - Processed 58100000 reads so far
2011-05-19 22:58:25,054 - INFO - Processed 58200000 reads so far
2011-05-19 22:58:33,035 - INFO - Processed 58300000 reads so far
2011-05-19 22:58:42,612 - INFO - Processed 58400000 reads so far
2011-05-19 22:58:49,757 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:2990064-23010064
2011-05-19 22:58:49,953 - INFO - Processed 58500000 reads so far
2011-05-19 22:58:57,398 - INFO - Processed 58600000 reads so far
2011-05-19 22:59:07,143 - INFO - Processed 58700000 reads so far
2011-05-19 22:59:15,048 - INFO - Processed 58800000 reads so far
2011-05-19 22:59:24,467 - INFO - Processed 58900000 reads so far
2011-05-19 22:59:32,911 - INFO - Processed 59000000 reads so far
2011-05-19 22:59:40,211 - INFO - Processed 59100000 reads so far
2011-05-19 22:59:52,454 - INFO - Processed 59200000 reads so far
2011-05-19 23:00:01,796 - INFO - Processed 59300000 reads so far
2011-05-19 23:00:10,657 - INFO - Processed 59400000 reads so far
2011-05-19 23:00:17,820 - INFO - Processed 59500000 reads so far
2011-05-19 23:00:25,395 - INFO - Processed 59600000 reads so far
2011-05-19 23:00:31,917 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:22990087-43010087
2011-05-19 23:00:33,037 - INFO - Processed 59700000 reads so far
2011-05-19 23:00:42,506 - INFO - Processed 59800000 reads so far
2011-05-19 23:00:52,418 - INFO - Processed 59900000 reads so far
2011-05-19 23:01:00,575 - INFO - Processed 60000000 reads so far
2011-05-19 23:01:07,393 - INFO - Processed 60100000 reads so far
2011-05-19 23:01:18,842 - INFO - Processed 60200000 reads so far
2011-05-19 23:01:35,659 - INFO - Processed 60300000 reads so far
2011-05-19 23:01:48,933 - INFO - Processed 60400000 reads so far
2011-05-19 23:02:00,007 - INFO - Processed 60500000 reads so far
2011-05-19 23:02:09,292 - INFO - Processed 60600000 reads so far
2011-05-19 23:02:19,507 - INFO - Processed 60700000 reads so far
2011-05-19 23:02:28,915 - INFO - Processed 60800000 reads so far
2011-05-19 23:02:34,660 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:42990095-63010095
2011-05-19 23:02:36,068 - INFO - Processed 60900000 reads so far
2011-05-19 23:02:44,245 - INFO - Processed 61000000 reads so far
2011-05-19 23:02:51,949 - INFO - Processed 61100000 reads so far
2011-05-19 23:03:02,658 - INFO - Processed 61200000 reads so far
2011-05-19 23:03:13,798 - INFO - Processed 61300000 reads so far
2011-05-19 23:03:25,207 - INFO - Processed 61400000 reads so far
2011-05-19 23:03:36,294 - INFO - Processed 61500000 reads so far
2011-05-19 23:03:45,188 - INFO - Processed 61600000 reads so far
2011-05-19 23:03:54,307 - INFO - Processed 61700000 reads so far
2011-05-19 23:04:07,432 - INFO - Processed 61800000 reads so far
2011-05-19 23:04:18,351 - INFO - Processed 61900000 reads so far
2011-05-19 23:04:26,081 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:2989990-23009990
2011-05-19 23:04:26,592 - INFO - Processed 62000000 reads so far
2011-05-19 23:04:36,633 - INFO - Processed 62100000 reads so far
2011-05-19 23:04:43,950 - INFO - Processed 62200000 reads so far
2011-05-19 23:04:53,136 - INFO - Processed 62300000 reads so far
2011-05-19 23:05:01,143 - INFO - Processed 62400000 reads so far
2011-05-19 23:05:10,572 - INFO - Processed 62500000 reads so far
2011-05-19 23:05:19,957 - INFO - Processed 62600000 reads so far
2011-05-19 23:05:28,546 - INFO - Processed 62700000 reads so far
2011-05-19 23:05:38,692 - INFO - Processed 62800000 reads so far
2011-05-19 23:05:47,039 - INFO - Processed 62900000 reads so far
2011-05-19 23:05:54,749 - INFO - Processed 63000000 reads so far
2011-05-19 23:06:06,277 - INFO - Processed 63100000 reads so far
2011-05-19 23:06:11,629 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:22989997-43009997
2011-05-19 23:06:14,644 - INFO - Processed 63200000 reads so far
2011-05-19 23:06:25,140 - INFO - Processed 63300000 reads so far
2011-05-19 23:06:34,667 - INFO - Processed 63400000 reads so far
2011-05-19 23:06:43,970 - INFO - Processed 63500000 reads so far
2011-05-19 23:06:52,760 - INFO - Processed 63600000 reads so far
2011-05-19 23:07:01,930 - INFO - Processed 63700000 reads so far
2011-05-19 23:07:09,319 - INFO - Processed 63800000 reads so far
2011-05-19 23:07:16,849 - INFO - Processed 63900000 reads so far
2011-05-19 23:07:25,166 - INFO - Processed 64000000 reads so far
2011-05-19 23:07:34,098 - INFO - Processed 64100000 reads so far
2011-05-19 23:07:43,332 - INFO - Processed 64200000 reads so far
2011-05-19 23:07:52,109 - INFO - Processed 64300000 reads so far
2011-05-19 23:07:56,437 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:42989999-63009999
2011-05-19 23:08:01,293 - INFO - Processed 64400000 reads so far
2011-05-19 23:08:11,277 - INFO - Processed 64500000 reads so far
2011-05-19 23:08:21,978 - INFO - Processed 64600000 reads so far
2011-05-19 23:08:29,682 - INFO - Processed 64700000 reads so far
2011-05-19 23:08:37,699 - INFO - Processed 64800000 reads so far
2011-05-19 23:08:48,221 - INFO - Processed 64900000 reads so far
2011-05-19 23:08:56,887 - INFO - Processed 65000000 reads so far
2011-05-19 23:09:06,075 - INFO - Processed 65100000 reads so far
2011-05-19 23:09:13,817 - INFO - Processed 65200000 reads so far
2011-05-19 23:09:23,351 - INFO - Processed 65300000 reads so far
2011-05-19 23:09:33,031 - INFO - Processed 65400000 reads so far
2011-05-19 23:09:42,669 - INFO - Processed 65500000 reads so far
2011-05-19 23:09:43,991 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:62990008-83010008
2011-05-19 23:09:51,086 - INFO - Processed 65600000 reads so far
2011-05-19 23:10:02,448 - INFO - Processed 65700000 reads so far
2011-05-19 23:10:11,545 - INFO - Processed 65800000 reads so far
2011-05-19 23:10:21,617 - INFO - Processed 65900000 reads so far
2011-05-19 23:10:32,964 - INFO - Processed 66000000 reads so far
2011-05-19 23:10:42,679 - INFO - Processed 66100000 reads so far
2011-05-19 23:10:53,886 - INFO - Processed 66200000 reads so far
2011-05-19 23:11:04,670 - INFO - Processed 66300000 reads so far
2011-05-19 23:11:12,834 - INFO - Processed 66400000 reads so far
2011-05-19 23:11:22,285 - INFO - Processed 66500000 reads so far
2011-05-19 23:11:33,318 - INFO - Processed 66600000 reads so far
2011-05-19 23:11:42,898 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:82990017-103010017
2011-05-19 23:11:43,450 - INFO - Processed 66700000 reads so far
2011-05-19 23:11:52,513 - INFO - Processed 66800000 reads so far
2011-05-19 23:12:00,866 - INFO - Processed 66900000 reads so far
2011-05-19 23:12:10,080 - INFO - Processed 67000000 reads so far
2011-05-19 23:12:18,953 - INFO - Processed 67100000 reads so far
2011-05-19 23:12:27,236 - INFO - Processed 67200000 reads so far
2011-05-19 23:12:38,111 - INFO - Processed 67300000 reads so far
2011-05-19 23:12:50,246 - INFO - Processed 67400000 reads so far
2011-05-19 23:12:59,005 - INFO - Processed 67500000 reads so far
2011-05-19 23:13:09,032 - INFO - Processed 67600000 reads so far
2011-05-19 23:13:19,581 - INFO - Processed 67700000 reads so far
2011-05-19 23:13:27,662 - INFO - Processed 67800000 reads so far
2011-05-19 23:13:33,725 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:102990161-123010161
2011-05-19 23:13:36,816 - INFO - Processed 67900000 reads so far
2011-05-19 23:13:47,854 - INFO - Processed 68000000 reads so far
2011-05-19 23:13:56,207 - INFO - Processed 68100000 reads so far
2011-05-19 23:14:04,696 - INFO - Processed 68200000 reads so far
2011-05-19 23:14:14,776 - INFO - Processed 68300000 reads so far
2011-05-19 23:14:23,757 - INFO - Processed 68400000 reads so far
2011-05-19 23:14:32,264 - INFO - Processed 68500000 reads so far
2011-05-19 23:14:40,945 - INFO - Processed 68600000 reads so far
2011-05-19 23:14:50,105 - INFO - Processed 68700000 reads so far
2011-05-19 23:15:00,705 - INFO - Processed 68800000 reads so far
2011-05-19 23:15:09,137 - INFO - Processed 68900000 reads so far
2011-05-19 23:15:17,662 - INFO - Processed 69000000 reads so far
2011-05-19 23:15:20,195 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:122990162-143010162
2011-05-19 23:15:27,883 - INFO - Processed 69100000 reads so far
2011-05-19 23:15:36,131 - INFO - Processed 69200000 reads so far
2011-05-19 23:15:47,023 - INFO - Processed 69300000 reads so far
2011-05-19 23:15:57,905 - INFO - Processed 69400000 reads so far
2011-05-19 23:16:06,580 - INFO - Processed 69500000 reads so far
2011-05-19 23:16:17,374 - INFO - Processed 69600000 reads so far
2011-05-19 23:16:34,089 - INFO - Processed 69700000 reads so far
2011-05-19 23:16:47,036 - INFO - Processed 69800000 reads so far
2011-05-19 23:16:59,956 - INFO - Processed 69900000 reads so far
2011-05-19 23:17:13,024 - INFO - Processed 70000000 reads so far
2011-05-19 23:17:22,675 - INFO - Processed 70100000 reads so far
2011-05-19 23:17:35,163 - INFO - Processed 70200000 reads so far
2011-05-19 23:17:37,459 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:142990244-163010244
2011-05-19 23:17:46,618 - INFO - Processed 70300000 reads so far
2011-05-19 23:17:59,349 - INFO - Processed 70400000 reads so far
2011-05-19 23:18:11,788 - INFO - Processed 70500000 reads so far
2011-05-19 23:18:23,094 - INFO - Processed 70600000 reads so far
2011-05-19 23:18:33,950 - INFO - Processed 70700000 reads so far
2011-05-19 23:18:57,953 - INFO - Processed 70800000 reads so far
2011-05-19 23:19:06,358 - INFO - Processed 70900000 reads so far
2011-05-19 23:19:16,319 - INFO - Processed 71000000 reads so far
2011-05-19 23:19:26,099 - INFO - Processed 71100000 reads so far
2011-05-19 23:19:33,317 - INFO - Processed 71200000 reads so far
2011-05-19 23:19:43,035 - INFO - Processed 71300000 reads so far
2011-05-19 23:19:49,759 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:162990285-183010285
2011-05-19 23:19:54,435 - INFO - Processed 71400000 reads so far
2011-05-19 23:20:03,209 - INFO - Processed 71500000 reads so far
2011-05-19 23:20:14,971 - INFO - Processed 71600000 reads so far
2011-05-19 23:20:23,140 - INFO - Processed 71700000 reads so far
2011-05-19 23:20:31,181 - INFO - Processed 71800000 reads so far
2011-05-19 23:20:39,596 - INFO - Processed 71900000 reads so far
2011-05-19 23:20:47,724 - INFO - Processed 72000000 reads so far
2011-05-19 23:20:55,460 - INFO - Processed 72100000 reads so far
2011-05-19 23:21:06,087 - INFO - Processed 72200000 reads so far
2011-05-19 23:21:14,899 - INFO - Processed 72300000 reads so far
2011-05-19 23:21:23,151 - INFO - Processed 72400000 reads so far
2011-05-19 23:21:30,464 - INFO - Processed 72500000 reads so far
2011-05-19 23:21:39,557 - INFO - Processed 72600000 reads so far
2011-05-19 23:21:40,046 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:182990298-203010298
2011-05-19 23:21:48,467 - INFO - Processed 72700000 reads so far
2011-05-19 23:21:57,658 - INFO - Processed 72800000 reads so far
2011-05-19 23:22:06,964 - INFO - Processed 72900000 reads so far
2011-05-19 23:22:16,287 - INFO - Processed 73000000 reads so far
2011-05-19 23:22:24,362 - INFO - Processed 73100000 reads so far
2011-05-19 23:22:32,804 - INFO - Processed 73200000 reads so far
2011-05-19 23:22:41,828 - INFO - Processed 73300000 reads so far
2011-05-19 23:22:50,857 - INFO - Processed 73400000 reads so far
2011-05-19 23:22:56,085 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1_random:0-20010000
2011-05-19 23:22:59,112 - INFO - Processed 73500000 reads so far
2011-05-19 23:23:05,229 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:2990022-23010022
2011-05-19 23:23:09,625 - INFO - Processed 73600000 reads so far
2011-05-19 23:23:17,367 - INFO - Processed 73700000 reads so far
2011-05-19 23:23:25,614 - INFO - Processed 73800000 reads so far
2011-05-19 23:23:35,104 - INFO - Processed 73900000 reads so far
2011-05-19 23:23:43,190 - INFO - Processed 74000000 reads so far
2011-05-19 23:23:52,174 - INFO - Processed 74100000 reads so far
2011-05-19 23:24:01,919 - INFO - Processed 74200000 reads so far
2011-05-19 23:24:13,497 - INFO - Processed 74300000 reads so far
2011-05-19 23:24:25,826 - INFO - Processed 74400000 reads so far
2011-05-19 23:24:36,922 - INFO - Processed 74500000 reads so far
2011-05-19 23:24:48,509 - INFO - Processed 74600000 reads so far
2011-05-19 23:25:01,464 - INFO - Processed 74700000 reads so far
2011-05-19 23:25:07,681 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:22990033-43010033
2011-05-19 23:25:10,839 - INFO - Processed 74800000 reads so far
2011-05-19 23:25:28,767 - INFO - Processed 74900000 reads so far
2011-05-19 23:25:39,896 - INFO - Processed 75000000 reads so far
2011-05-19 23:25:48,042 - INFO - Processed 75100000 reads so far
2011-05-19 23:25:57,420 - INFO - Processed 75200000 reads so far
2011-05-19 23:26:07,948 - INFO - Processed 75300000 reads so far
2011-05-19 23:26:17,048 - INFO - Processed 75400000 reads so far
2011-05-19 23:26:25,038 - INFO - Processed 75500000 reads so far
2011-05-19 23:26:33,687 - INFO - Processed 75600000 reads so far
2011-05-19 23:26:42,798 - INFO - Processed 75700000 reads so far
2011-05-19 23:26:52,236 - INFO - Processed 75800000 reads so far
2011-05-19 23:27:02,986 - INFO - Processed 75900000 reads so far
2011-05-19 23:27:10,448 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:42990042-63010042
2011-05-19 23:27:12,816 - INFO - Processed 76000000 reads so far
2011-05-19 23:27:21,830 - INFO - Processed 76100000 reads so far
2011-05-19 23:27:30,931 - INFO - Processed 76200000 reads so far
2011-05-19 23:27:39,882 - INFO - Processed 76300000 reads so far
2011-05-19 23:27:50,550 - INFO - Processed 76400000 reads so far
2011-05-19 23:28:00,340 - INFO - Processed 76500000 reads so far
2011-05-19 23:28:09,588 - INFO - Processed 76600000 reads so far
2011-05-19 23:28:19,020 - INFO - Processed 76700000 reads so far
2011-05-19 23:28:27,686 - INFO - Processed 76800000 reads so far
2011-05-19 23:28:36,815 - INFO - Processed 76900000 reads so far
2011-05-19 23:28:47,323 - INFO - Processed 77000000 reads so far
2011-05-19 23:28:57,022 - INFO - Processed 77100000 reads so far
2011-05-19 23:28:59,667 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:62990075-83010075
2011-05-19 23:29:07,230 - INFO - Processed 77200000 reads so far
2011-05-19 23:29:17,411 - INFO - Processed 77300000 reads so far
2011-05-19 23:29:28,513 - INFO - Processed 77400000 reads so far
2011-05-19 23:29:39,718 - INFO - Processed 77500000 reads so far
2011-05-19 23:29:51,143 - INFO - Processed 77600000 reads so far
2011-05-19 23:30:00,691 - INFO - Processed 77700000 reads so far
2011-05-19 23:30:10,544 - INFO - Processed 77800000 reads so far
2011-05-19 23:30:23,634 - INFO - Processed 77900000 reads so far
2011-05-19 23:30:35,929 - INFO - Processed 78000000 reads so far
2011-05-19 23:30:46,445 - INFO - Processed 78100000 reads so far
2011-05-19 23:30:55,241 - INFO - Processed 78200000 reads so far
2011-05-19 23:31:05,043 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:82990081-103010081
2011-05-19 23:31:05,506 - INFO - Processed 78300000 reads so far
2011-05-19 23:31:17,308 - INFO - Processed 78400000 reads so far
2011-05-19 23:31:29,487 - INFO - Processed 78500000 reads so far
2011-05-19 23:31:42,703 - INFO - Processed 78600000 reads so far
2011-05-19 23:31:57,331 - INFO - Processed 78700000 reads so far
2011-05-19 23:32:08,866 - INFO - Processed 78800000 reads so far
2011-05-19 23:32:20,093 - INFO - Processed 78900000 reads so far
2011-05-19 23:32:28,486 - INFO - Processed 79000000 reads so far
2011-05-19 23:32:40,274 - INFO - Processed 79100000 reads so far
2011-05-19 23:32:48,321 - INFO - Processed 79200000 reads so far
2011-05-19 23:32:56,367 - INFO - Processed 79300000 reads so far
2011-05-19 23:33:04,962 - INFO - Processed 79400000 reads so far
2011-05-19 23:33:12,164 - INFO - Processed 79500000 reads so far
2011-05-19 23:33:23,879 - INFO - Processed 79600000 reads so far
2011-05-19 23:33:34,164 - INFO - Processed 79700000 reads so far
2011-05-19 23:33:42,092 - INFO - Processed 79800000 reads so far
2011-05-19 23:33:49,017 - INFO - Processed 79900000 reads so far
2011-05-19 23:33:55,716 - INFO - Processed 80000000 reads so far
2011-05-19 23:34:02,577 - INFO - Processed 80100000 reads so far
2011-05-19 23:34:12,383 - INFO - Processed 80200000 reads so far
2011-05-19 23:34:20,421 - INFO - Processed 80300000 reads so far
2011-05-19 23:34:29,320 - INFO - Processed 80400000 reads so far
2011-05-19 23:34:36,728 - INFO - Processed 80500000 reads so far
2011-05-19 23:34:45,557 - INFO - Processed 80600000 reads so far
2011-05-19 23:34:52,464 - INFO - Processed 80700000 reads so far
2011-05-19 23:34:57,970 - INFO - Processed 80800000 reads so far
2011-05-19 23:35:05,261 - INFO - Processed 80900000 reads so far
2011-05-19 23:35:12,639 - INFO - Processed 81000000 reads so far
2011-05-19 23:35:21,315 - INFO - Processed 81100000 reads so far
2011-05-19 23:35:29,062 - INFO - Processed 81200000 reads so far
2011-05-19 23:35:35,723 - INFO - Processed 81300000 reads so far
2011-05-19 23:35:45,084 - INFO - Processed 81400000 reads so far
2011-05-19 23:35:54,599 - INFO - Processed 81500000 reads so far
2011-05-19 23:36:03,216 - INFO - Processed 81600000 reads so far
2011-05-19 23:36:11,040 - INFO - Processed 81700000 reads so far
2011-05-19 23:36:19,825 - INFO - Processed 81800000 reads so far
2011-05-19 23:36:29,040 - INFO - Processed 81900000 reads so far
2011-05-19 23:36:37,050 - INFO - Processed 82000000 reads so far
2011-05-19 23:36:46,853 - INFO - Processed 82100000 reads so far
2011-05-19 23:36:56,142 - INFO - Processed 82200000 reads so far
2011-05-19 23:37:05,380 - INFO - Processed 82300000 reads so far
2011-05-19 23:37:13,736 - INFO - Processed 82400000 reads so far
2011-05-19 23:37:22,347 - INFO - Processed 82500000 reads so far
2011-05-19 23:37:31,414 - INFO - Processed 82600000 reads so far
2011-05-19 23:37:39,739 - INFO - Processed 82700000 reads so far
2011-05-19 23:37:48,105 - INFO - Processed 82800000 reads so far
2011-05-19 23:37:56,463 - INFO - Processed 82900000 reads so far
2011-05-19 23:38:07,634 - INFO - Processed 83000000 reads so far
2011-05-19 23:38:17,770 - INFO - Processed 83100000 reads so far
2011-05-19 23:38:25,300 - INFO - Processed 83200000 reads so far
2011-05-19 23:38:34,968 - INFO - Processed 83300000 reads so far
2011-05-19 23:38:41,976 - INFO - Processed 83400000 reads so far
2011-05-19 23:38:49,486 - INFO - Processed 83500000 reads so far
2011-05-19 23:39:20,102 - INFO - Processed 83600000 reads so far
2011-05-19 23:39:40,218 - INFO - Processed 83700000 reads so far
2011-05-19 23:39:49,528 - INFO - Processed 83800000 reads so far
2011-05-19 23:39:58,692 - INFO - Processed 83900000 reads so far
2011-05-19 23:40:09,840 - INFO - Processed 84000000 reads so far
2011-05-19 23:40:19,373 - INFO - Processed 84100000 reads so far
2011-05-19 23:40:27,896 - INFO - Processed 84200000 reads so far
2011-05-19 23:40:36,473 - INFO - Processed 84300000 reads so far
2011-05-19 23:40:45,372 - INFO - Processed 84400000 reads so far
2011-05-19 23:40:55,065 - INFO - Processed 84500000 reads so far
2011-05-19 23:41:03,641 - INFO - Processed 84600000 reads so far
2011-05-19 23:41:12,448 - INFO - Processed 84700000 reads so far
2011-05-19 23:41:22,403 - INFO - Processed 84800000 reads so far
2011-05-19 23:41:31,612 - INFO - Processed 84900000 reads so far
2011-05-19 23:41:40,714 - INFO - Processed 85000000 reads so far
2011-05-19 23:41:49,904 - INFO - Processed 85100000 reads so far
2011-05-19 23:42:01,852 - INFO - Processed 85200000 reads so far
2011-05-19 23:42:11,191 - INFO - Processed 85300000 reads so far
2011-05-19 23:42:20,465 - INFO - Processed 85400000 reads so far
2011-05-19 23:42:30,611 - INFO - Processed 85500000 reads so far
2011-05-19 23:42:39,316 - INFO - Processed 85600000 reads so far
2011-05-19 23:42:47,153 - INFO - Processed 85700000 reads so far
2011-05-19 23:42:56,542 - INFO - Processed 85800000 reads so far
2011-05-19 23:43:07,265 - INFO - Processed 85900000 reads so far
2011-05-19 23:43:16,558 - INFO - Processed 86000000 reads so far
2011-05-19 23:43:25,888 - INFO - Processed 86100000 reads so far
2011-05-19 23:43:38,358 - INFO - Processed 86200000 reads so far
2011-05-19 23:43:47,533 - INFO - Processed 86300000 reads so far
2011-05-19 23:43:55,889 - INFO - Processed 86400000 reads so far
2011-05-19 23:44:04,556 - INFO - Processed 86500000 reads so far
2011-05-19 23:44:14,832 - INFO - Processed 86600000 reads so far
2011-05-19 23:44:21,774 - INFO - Processed 86700000 reads so far
2011-05-19 23:44:28,658 - INFO - Processed 86800000 reads so far
2011-05-19 23:44:38,041 - INFO - Processed 86900000 reads so far
2011-05-19 23:44:48,867 - INFO - Processed 87000000 reads so far
2011-05-19 23:44:56,471 - INFO - Processed 87100000 reads so far
2011-05-19 23:45:05,310 - INFO - Processed 87200000 reads so far
2011-05-19 23:45:13,639 - INFO - Processed 87300000 reads so far
2011-05-19 23:45:21,588 - INFO - Processed 87400000 reads so far
2011-05-19 23:45:30,698 - INFO - Processed 87500000 reads so far
2011-05-19 23:45:39,515 - INFO - Processed 87600000 reads so far
2011-05-19 23:45:48,693 - INFO - Processed 87700000 reads so far
2011-05-19 23:45:58,375 - INFO - Processed 87800000 reads so far
2011-05-19 23:46:07,229 - INFO - Processed 87900000 reads so far
2011-05-19 23:46:15,951 - INFO - Processed 88000000 reads so far
2011-05-19 23:46:26,193 - INFO - Processed 88100000 reads so far
2011-05-19 23:46:40,070 - INFO - Processed 88200000 reads so far
2011-05-19 23:46:49,799 - INFO - Processed 88300000 reads so far
2011-05-19 23:47:00,380 - INFO - Processed 88400000 reads so far
2011-05-19 23:47:11,379 - INFO - Processed 88500000 reads so far
2011-05-19 23:47:20,603 - INFO - Processed 88600000 reads so far
2011-05-19 23:47:29,157 - INFO - Processed 88700000 reads so far
2011-05-19 23:47:38,593 - INFO - Processed 88800000 reads so far
2011-05-19 23:47:48,928 - INFO - Processed 88900000 reads so far
2011-05-19 23:47:58,671 - INFO - Processed 89000000 reads so far
2011-05-19 23:48:08,100 - INFO - Processed 89100000 reads so far
2011-05-19 23:48:19,544 - INFO - Processed 89200000 reads so far
2011-05-19 23:48:50,213 - INFO - Processed 89300000 reads so far
2011-05-19 23:48:58,805 - INFO - Processed 89400000 reads so far
2011-05-19 23:49:09,417 - INFO - Processed 89500000 reads so far
2011-05-19 23:49:18,426 - INFO - Processed 89600000 reads so far
2011-05-19 23:49:31,182 - INFO - Processed 89700000 reads so far
2011-05-19 23:49:41,721 - INFO - Processed 89800000 reads so far
2011-05-19 23:49:51,568 - INFO - Processed 89900000 reads so far
2011-05-19 23:50:02,420 - INFO - Processed 90000000 reads so far
2011-05-19 23:50:12,952 - INFO - Processed 90100000 reads so far
2011-05-19 23:50:23,369 - INFO - Processed 90200000 reads so far
2011-05-19 23:50:32,934 - INFO - Processed 90300000 reads so far
2011-05-19 23:50:42,090 - INFO - Processed 90400000 reads so far
2011-05-19 23:50:51,003 - INFO - Processed 90500000 reads so far
2011-05-19 23:50:59,818 - INFO - Processed 90600000 reads so far
2011-05-19 23:51:10,132 - INFO - Processed 90700000 reads so far
2011-05-19 23:51:21,749 - INFO - Processed 90800000 reads so far
2011-05-19 23:51:30,258 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:102990088-123010088
2011-05-19 23:51:31,806 - INFO - Processed 90900000 reads so far
2011-05-19 23:51:44,570 - INFO - Processed 91000000 reads so far
2011-05-19 23:51:56,004 - INFO - Processed 91100000 reads so far
2011-05-19 23:52:08,904 - INFO - Processed 91200000 reads so far
2011-05-19 23:52:18,431 - INFO - Processed 91300000 reads so far
2011-05-19 23:52:29,438 - INFO - Processed 91400000 reads so far
2011-05-19 23:52:41,167 - INFO - Processed 91500000 reads so far
2011-05-19 23:52:53,454 - INFO - Processed 91600000 reads so far
2011-05-19 23:53:04,701 - INFO - Processed 91700000 reads so far
2011-05-19 23:53:16,018 - INFO - Processed 91800000 reads so far
2011-05-19 23:53:28,563 - INFO - Processed 91900000 reads so far
2011-05-19 23:53:40,621 - INFO - Processed 92000000 reads so far
2011-05-19 23:53:47,445 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:122990168-143010168
2011-05-19 23:53:54,816 - INFO - Processed 92100000 reads so far
2011-05-19 23:54:05,913 - INFO - Processed 92200000 reads so far
2011-05-19 23:54:17,633 - INFO - Processed 92300000 reads so far
2011-05-19 23:54:29,582 - INFO - Processed 92400000 reads so far
2011-05-19 23:54:40,841 - INFO - Processed 92500000 reads so far
2011-05-19 23:54:53,995 - INFO - Processed 92600000 reads so far
2011-05-19 23:55:05,938 - INFO - Processed 92700000 reads so far
2011-05-19 23:55:17,215 - INFO - Processed 92800000 reads so far
2011-05-19 23:55:35,573 - INFO - Processed 92900000 reads so far
2011-05-19 23:56:02,641 - INFO - Processed 93000000 reads so far
2011-05-19 23:56:14,062 - INFO - Processed 93100000 reads so far
2011-05-19 23:56:25,873 - INFO - Processed 93200000 reads so far
2011-05-19 23:56:32,927 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:142990222-163010222
2011-05-19 23:56:37,359 - INFO - Processed 93300000 reads so far
2011-05-19 23:56:48,989 - INFO - Processed 93400000 reads so far
2011-05-19 23:57:00,080 - INFO - Processed 93500000 reads so far
2011-05-19 23:57:11,610 - INFO - Processed 93600000 reads so far
2011-05-19 23:57:21,761 - INFO - Processed 93700000 reads so far
2011-05-19 23:57:35,789 - INFO - Processed 93800000 reads so far
2011-05-19 23:57:44,415 - INFO - Processed 93900000 reads so far
2011-05-19 23:57:54,440 - INFO - Processed 94000000 reads so far
2011-05-19 23:58:07,362 - INFO - Processed 94100000 reads so far
2011-05-19 23:58:18,531 - INFO - Processed 94200000 reads so far
2011-05-19 23:58:28,985 - INFO - Processed 94300000 reads so far
2011-05-19 23:58:41,193 - INFO - Processed 94400000 reads so far
2011-05-19 23:58:49,713 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:162990233-183010233
2011-05-19 23:58:53,044 - INFO - Processed 94500000 reads so far
2011-05-19 23:59:04,370 - INFO - Processed 94600000 reads so far
2011-05-19 23:59:15,219 - INFO - Processed 94700000 reads so far
2011-05-19 23:59:24,842 - INFO - Processed 94800000 reads so far
2011-05-19 23:59:36,606 - INFO - Processed 94900000 reads so far
2011-05-19 23:59:49,364 - INFO - Processed 95000000 reads so far
2011-05-20 00:00:00,654 - INFO - Processed 95100000 reads so far
2011-05-20 00:00:12,897 - INFO - Processed 95200000 reads so far
2011-05-20 00:00:26,492 - INFO - Processed 95300000 reads so far
2011-05-20 00:00:35,841 - INFO - Processed 95400000 reads so far
2011-05-20 00:00:43,643 - INFO - Processed 95500000 reads so far
2011-05-20 00:00:51,246 - INFO - Processed 95600000 reads so far
2011-05-20 00:00:56,014 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:2989998-23009998
2011-05-20 00:00:58,644 - INFO - Processed 95700000 reads so far
2011-05-20 00:01:06,522 - INFO - Processed 95800000 reads so far
2011-05-20 00:01:14,843 - INFO - Processed 95900000 reads so far
2011-05-20 00:01:25,980 - INFO - Processed 96000000 reads so far
2011-05-20 00:01:38,472 - INFO - Processed 96100000 reads so far
2011-05-20 00:01:50,494 - INFO - Processed 96200000 reads so far
2011-05-20 00:02:01,142 - INFO - Processed 96300000 reads so far
2011-05-20 00:02:10,300 - INFO - Processed 96400000 reads so far
2011-05-20 00:02:17,840 - INFO - Processed 96500000 reads so far
2011-05-20 00:02:25,963 - INFO - Processed 96600000 reads so far
2011-05-20 00:02:35,882 - INFO - Processed 96700000 reads so far
2011-05-20 00:02:45,636 - INFO - Processed 96800000 reads so far
2011-05-20 00:02:49,139 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:22990000-43010000
2011-05-20 00:02:55,168 - INFO - Processed 96900000 reads so far
2011-05-20 00:03:04,372 - INFO - Processed 97000000 reads so far
2011-05-20 00:03:12,987 - INFO - Processed 97100000 reads so far
2011-05-20 00:03:21,836 - INFO - Processed 97200000 reads so far
2011-05-20 00:03:31,270 - INFO - Processed 97300000 reads so far
2011-05-20 00:03:49,057 - INFO - Processed 97400000 reads so far
2011-05-20 00:04:20,632 - INFO - Processed 97500000 reads so far
2011-05-20 00:04:29,047 - INFO - Processed 97600000 reads so far
2011-05-20 00:04:40,611 - INFO - Processed 97700000 reads so far
2011-05-20 00:04:47,719 - INFO - Processed 97800000 reads so far
2011-05-20 00:04:57,246 - INFO - Processed 97900000 reads so far
2011-05-20 00:05:07,587 - INFO - Processed 98000000 reads so far
2011-05-20 00:05:09,896 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:42990007-63010007
2011-05-20 00:05:16,916 - INFO - Processed 98100000 reads so far
2011-05-20 00:05:28,928 - INFO - Processed 98200000 reads so far
2011-05-20 00:05:40,120 - INFO - Processed 98300000 reads so far
2011-05-20 00:05:51,616 - INFO - Processed 98400000 reads so far
2011-05-20 00:06:05,211 - INFO - Processed 98500000 reads so far
2011-05-20 00:06:15,231 - INFO - Processed 98600000 reads so far
2011-05-20 00:06:24,570 - INFO - Processed 98700000 reads so far
2011-05-20 00:06:33,851 - INFO - Processed 98800000 reads so far
2011-05-20 00:06:46,472 - INFO - Processed 98900000 reads so far
2011-05-20 00:06:59,467 - INFO - Processed 99000000 reads so far
2011-05-20 00:07:12,048 - INFO - Processed 99100000 reads so far
2011-05-20 00:07:21,774 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:62990014-83010014
2011-05-20 00:07:25,024 - INFO - Processed 99200000 reads so far
2011-05-20 00:07:36,755 - INFO - Processed 99300000 reads so far
2011-05-20 00:07:48,213 - INFO - Processed 99400000 reads so far
2011-05-20 00:08:01,653 - INFO - Processed 99500000 reads so far
2011-05-20 00:08:12,964 - INFO - Processed 99600000 reads so far
2011-05-20 00:08:23,087 - INFO - Processed 99700000 reads so far
2011-05-20 00:08:35,829 - INFO - Processed 99800000 reads so far
2011-05-20 00:08:46,957 - INFO - Processed 99900000 reads so far
2011-05-20 00:08:58,845 - INFO - Processed 100000000 reads so far
2011-05-20 00:09:10,463 - INFO - Processed 100100000 reads so far
2011-05-20 00:09:20,880 - INFO - Processed 100200000 reads so far
2011-05-20 00:09:30,751 - INFO - Processed 100300000 reads so far
2011-05-20 00:09:33,078 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:82990018-103010018
2011-05-20 00:09:43,052 - INFO - Processed 100400000 reads so far
2011-05-20 00:09:54,690 - INFO - Processed 100500000 reads so far
2011-05-20 00:10:06,703 - INFO - Processed 100600000 reads so far
2011-05-20 00:10:26,612 - INFO - Processed 100700000 reads so far
2011-05-20 00:10:46,830 - INFO - Processed 100800000 reads so far
2011-05-20 00:11:03,216 - INFO - Processed 100900000 reads so far
2011-05-20 00:11:12,606 - INFO - Processed 101000000 reads so far
2011-05-20 00:11:26,367 - INFO - Processed 101100000 reads so far
2011-05-20 00:11:37,017 - INFO - Processed 101200000 reads so far
2011-05-20 00:11:50,125 - INFO - Processed 101300000 reads so far
2011-05-20 00:12:14,057 - INFO - Processed 101400000 reads so far
2011-05-20 00:12:30,211 - INFO - Processed 101500000 reads so far
2011-05-20 00:12:31,550 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:102990056-123010056
2011-05-20 00:12:44,527 - INFO - Processed 101600000 reads so far
2011-05-20 00:13:06,258 - INFO - Processed 101700000 reads so far
2011-05-20 00:13:16,383 - INFO - Processed 101800000 reads so far
2011-05-20 00:13:27,007 - INFO - Processed 101900000 reads so far
2011-05-20 00:13:38,693 - INFO - Processed 102000000 reads so far
2011-05-20 00:13:48,162 - INFO - Processed 102100000 reads so far
2011-05-20 00:13:57,223 - INFO - Processed 102200000 reads so far
2011-05-20 00:14:06,299 - INFO - Processed 102300000 reads so far
2011-05-20 00:14:16,782 - INFO - Processed 102400000 reads so far
2011-05-20 00:14:28,808 - INFO - Processed 102500000 reads so far
2011-05-20 00:14:38,143 - INFO - Processed 102600000 reads so far
2011-05-20 00:14:46,923 - INFO - Processed 102700000 reads so far
2011-05-20 00:14:47,981 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:122990065-143010065
2011-05-20 00:15:10,987 - INFO - Processed 102800000 reads so far
2011-05-20 00:15:21,401 - INFO - Processed 102900000 reads so far
2011-05-20 00:15:30,867 - INFO - Processed 103000000 reads so far
2011-05-20 00:15:41,599 - INFO - Processed 103100000 reads so far
2011-05-20 00:15:54,322 - INFO - Processed 103200000 reads so far
2011-05-20 00:16:06,628 - INFO - Processed 103300000 reads so far
2011-05-20 00:16:17,666 - INFO - Processed 103400000 reads so far
2011-05-20 00:16:28,177 - INFO - Processed 103500000 reads so far
2011-05-20 00:16:40,096 - INFO - Processed 103600000 reads so far
2011-05-20 00:16:49,908 - INFO - Processed 103700000 reads so far
2011-05-20 00:16:58,526 - INFO - Processed 103800000 reads so far
2011-05-20 00:17:05,682 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:142990088-163010088
2011-05-20 00:17:07,554 - INFO - Processed 103900000 reads so far
2011-05-20 00:17:18,009 - INFO - Processed 104000000 reads so far
2011-05-20 00:17:27,106 - INFO - Processed 104100000 reads so far
2011-05-20 00:17:38,545 - INFO - Processed 104200000 reads so far
2011-05-20 00:17:47,324 - INFO - Processed 104300000 reads so far
2011-05-20 00:17:56,106 - INFO - Processed 104400000 reads so far
2011-05-20 00:18:06,187 - INFO - Processed 104500000 reads so far
2011-05-20 00:18:19,160 - INFO - Processed 104600000 reads so far
2011-05-20 00:18:28,085 - INFO - Processed 104700000 reads so far
2011-05-20 00:18:37,994 - INFO - Processed 104800000 reads so far
2011-05-20 00:18:46,164 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3_random:0-20010007
2011-05-20 00:18:46,313 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:2989987-23009987
2011-05-20 00:18:47,956 - INFO - Processed 104900000 reads so far
2011-05-20 00:18:57,471 - INFO - Processed 105000000 reads so far
2011-05-20 00:19:12,617 - INFO - Processed 105100000 reads so far
2011-05-20 00:19:26,738 - INFO - Processed 105200000 reads so far
2011-05-20 00:19:38,324 - INFO - Processed 105300000 reads so far
2011-05-20 00:19:49,832 - INFO - Processed 105400000 reads so far
2011-05-20 00:19:57,841 - INFO - Processed 105500000 reads so far
2011-05-20 00:20:06,896 - INFO - Processed 105600000 reads so far
2011-05-20 00:20:16,019 - INFO - Processed 105700000 reads so far
2011-05-20 00:20:25,110 - INFO - Processed 105800000 reads so far
2011-05-20 00:20:35,408 - INFO - Processed 105900000 reads so far
2011-05-20 00:20:46,166 - INFO - Processed 106000000 reads so far
2011-05-20 00:21:00,149 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:22989989-43009989
2011-05-20 00:21:00,972 - INFO - Processed 106100000 reads so far
2011-05-20 00:21:12,261 - INFO - Processed 106200000 reads so far
2011-05-20 00:21:23,554 - INFO - Processed 106300000 reads so far
2011-05-20 00:21:34,594 - INFO - Processed 106400000 reads so far
2011-05-20 00:21:45,854 - INFO - Processed 106500000 reads so far
2011-05-20 00:21:57,672 - INFO - Processed 106600000 reads so far
2011-05-20 00:22:08,937 - INFO - Processed 106700000 reads so far
2011-05-20 00:22:23,916 - INFO - Processed 106800000 reads so far
2011-05-20 00:22:35,595 - INFO - Processed 106900000 reads so far
2011-05-20 00:22:45,971 - INFO - Processed 107000000 reads so far
2011-05-20 00:22:58,458 - INFO - Processed 107100000 reads so far
2011-05-20 00:23:09,717 - INFO - Processed 107200000 reads so far
2011-05-20 00:23:09,986 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:42990007-63010007
2011-05-20 00:23:24,809 - INFO - Processed 107300000 reads so far
2011-05-20 00:23:35,345 - INFO - Processed 107400000 reads so far
2011-05-20 00:23:45,815 - INFO - Processed 107500000 reads so far
2011-05-20 00:23:56,260 - INFO - Processed 107600000 reads so far
2011-05-20 00:24:08,041 - INFO - Processed 107700000 reads so far
2011-05-20 00:24:18,851 - INFO - Processed 107800000 reads so far
2011-05-20 00:24:31,075 - INFO - Processed 107900000 reads so far
2011-05-20 00:24:43,158 - INFO - Processed 108000000 reads so far
2011-05-20 00:24:54,890 - INFO - Processed 108100000 reads so far
2011-05-20 00:25:06,246 - INFO - Processed 108200000 reads so far
2011-05-20 00:25:17,357 - INFO - Processed 108300000 reads so far
2011-05-20 00:25:27,280 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:62990023-83010023
2011-05-20 00:25:28,472 - INFO - Processed 108400000 reads so far
2011-05-20 00:25:38,612 - INFO - Processed 108500000 reads so far
2011-05-20 00:25:49,478 - INFO - Processed 108600000 reads so far
2011-05-20 00:25:59,076 - INFO - Processed 108700000 reads so far
2011-05-20 00:26:08,607 - INFO - Processed 108800000 reads so far
2011-05-20 00:26:17,484 - INFO - Processed 108900000 reads so far
2011-05-20 00:26:27,230 - INFO - Processed 109000000 reads so far
2011-05-20 00:26:35,870 - INFO - Processed 109100000 reads so far
2011-05-20 00:26:44,728 - INFO - Processed 109200000 reads so far
2011-05-20 00:26:54,270 - INFO - Processed 109300000 reads so far
2011-05-20 00:27:03,711 - INFO - Processed 109400000 reads so far
2011-05-20 00:27:12,536 - INFO - Processed 109500000 reads so far
2011-05-20 00:27:18,228 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:82990051-103010051
2011-05-20 00:27:21,829 - INFO - Processed 109600000 reads so far
2011-05-20 00:27:32,876 - INFO - Processed 109700000 reads so far
2011-05-20 00:27:43,283 - INFO - Processed 109800000 reads so far
2011-05-20 00:27:51,575 - INFO - Processed 109900000 reads so far
2011-05-20 00:28:26,240 - INFO - Processed 110000000 reads so far
2011-05-20 00:28:37,916 - INFO - Processed 110100000 reads so far
2011-05-20 00:28:48,410 - INFO - Processed 110200000 reads so far
2011-05-20 00:29:01,890 - INFO - Processed 110300000 reads so far
2011-05-20 00:29:09,880 - INFO - Processed 110400000 reads so far
2011-05-20 00:29:20,814 - INFO - Processed 110500000 reads so far
2011-05-20 00:29:31,010 - INFO - Processed 110600000 reads so far
2011-05-20 00:29:43,867 - INFO - Processed 110700000 reads so far
2011-05-20 00:29:51,050 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:102990071-123010071
2011-05-20 00:29:55,163 - INFO - Processed 110800000 reads so far
2011-05-20 00:30:04,543 - INFO - Processed 110900000 reads so far
2011-05-20 00:30:15,162 - INFO - Processed 111000000 reads so far
2011-05-20 00:30:24,241 - INFO - Processed 111100000 reads so far
2011-05-20 00:30:32,053 - INFO - Processed 111200000 reads so far
2011-05-20 00:30:40,330 - INFO - Processed 111300000 reads so far
2011-05-20 00:30:49,245 - INFO - Processed 111400000 reads so far
2011-05-20 00:31:00,170 - INFO - Processed 111500000 reads so far
2011-05-20 00:31:09,939 - INFO - Processed 111600000 reads so far
2011-05-20 00:31:20,507 - INFO - Processed 111700000 reads so far
2011-05-20 00:31:30,392 - INFO - Processed 111800000 reads so far
2011-05-20 00:31:42,841 - INFO - Processed 111900000 reads so far
2011-05-20 00:31:44,950 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:122990093-143010093
2011-05-20 00:31:51,181 - INFO - Processed 112000000 reads so far
2011-05-20 00:31:59,480 - INFO - Processed 112100000 reads so far
2011-05-20 00:32:08,325 - INFO - Processed 112200000 reads so far
2011-05-20 00:32:19,709 - INFO - Processed 112300000 reads so far
2011-05-20 00:32:28,795 - INFO - Processed 112400000 reads so far
2011-05-20 00:32:39,044 - INFO - Processed 112500000 reads so far
2011-05-20 00:32:49,805 - INFO - Processed 112600000 reads so far
2011-05-20 00:32:59,230 - INFO - Processed 112700000 reads so far
2011-05-20 00:33:09,416 - INFO - Processed 112800000 reads so far
2011-05-20 00:33:18,617 - INFO - Processed 112900000 reads so far
2011-05-20 00:33:30,566 - INFO - Processed 113000000 reads so far
2011-05-20 00:33:42,521 - INFO - Processed 113100000 reads so far
2011-05-20 00:33:44,232 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:142990126-163010126
2011-05-20 00:33:54,492 - INFO - Processed 113200000 reads so far
2011-05-20 00:34:05,948 - INFO - Processed 113300000 reads so far
2011-05-20 00:34:14,342 - INFO - Processed 113400000 reads so far
2011-05-20 00:34:25,496 - INFO - Processed 113500000 reads so far
2011-05-20 00:34:36,341 - INFO - Processed 113600000 reads so far
2011-05-20 00:34:46,155 - INFO - Processed 113700000 reads so far
2011-05-20 00:34:55,596 - INFO - Processed 113800000 reads so far
2011-05-20 00:35:05,715 - INFO - Processed 113900000 reads so far
2011-05-20 00:35:11,807 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4_random:0-20010077
2011-05-20 00:35:12,683 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:2990010-23010010
2011-05-20 00:35:15,381 - INFO - Processed 114000000 reads so far
2011-05-20 00:35:25,871 - INFO - Processed 114100000 reads so far
2011-05-20 00:35:34,379 - INFO - Processed 114200000 reads so far
2011-05-20 00:35:43,158 - INFO - Processed 114300000 reads so far
2011-05-20 00:35:52,991 - INFO - Processed 114400000 reads so far
2011-05-20 00:36:02,082 - INFO - Processed 114500000 reads so far
2011-05-20 00:36:11,699 - INFO - Processed 114600000 reads so far
2011-05-20 00:36:21,096 - INFO - Processed 114700000 reads so far
2011-05-20 00:36:30,009 - INFO - Processed 114800000 reads so far
2011-05-20 00:36:40,637 - INFO - Processed 114900000 reads so far
2011-05-20 00:36:50,111 - INFO - Processed 115000000 reads so far
2011-05-20 00:37:00,422 - INFO - Processed 115100000 reads so far
2011-05-20 00:37:08,188 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:22990030-43010030
2011-05-20 00:37:09,295 - INFO - Processed 115200000 reads so far
2011-05-20 00:37:18,910 - INFO - Processed 115300000 reads so far
2011-05-20 00:37:30,256 - INFO - Processed 115400000 reads so far
2011-05-20 00:37:38,437 - INFO - Processed 115500000 reads so far
2011-05-20 00:37:49,595 - INFO - Processed 115600000 reads so far
2011-05-20 00:37:57,852 - INFO - Processed 115700000 reads so far
2011-05-20 00:38:08,443 - INFO - Processed 115800000 reads so far
2011-05-20 00:38:17,305 - INFO - Processed 115900000 reads so far
2011-05-20 00:38:26,232 - INFO - Processed 116000000 reads so far
2011-05-20 00:38:37,459 - INFO - Processed 116100000 reads so far
2011-05-20 00:38:50,107 - INFO - Processed 116200000 reads so far
2011-05-20 00:39:00,954 - INFO - Processed 116300000 reads so far
2011-05-20 00:39:08,534 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:42990076-63010076
2011-05-20 00:39:11,203 - INFO - Processed 116400000 reads so far
2011-05-20 00:39:22,782 - INFO - Processed 116500000 reads so far
2011-05-20 00:39:33,982 - INFO - Processed 116600000 reads so far
2011-05-20 00:39:46,992 - INFO - Processed 116700000 reads so far
2011-05-20 00:39:58,047 - INFO - Processed 116800000 reads so far
2011-05-20 00:40:06,748 - INFO - Processed 116900000 reads so far
2011-05-20 00:40:17,265 - INFO - Processed 117000000 reads so far
2011-05-20 00:40:27,869 - INFO - Processed 117100000 reads so far
2011-05-20 00:40:39,723 - INFO - Processed 117200000 reads so far
2011-05-20 00:40:52,057 - INFO - Processed 117300000 reads so far
2011-05-20 00:41:01,342 - INFO - Processed 117400000 reads so far
2011-05-20 00:41:12,325 - INFO - Processed 117500000 reads so far
2011-05-20 00:41:14,789 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:62990102-83010102
2011-05-20 00:41:22,574 - INFO - Processed 117600000 reads so far
2011-05-20 00:41:33,183 - INFO - Processed 117700000 reads so far
2011-05-20 00:41:45,498 - INFO - Processed 117800000 reads so far
2011-05-20 00:41:54,356 - INFO - Processed 117900000 reads so far
2011-05-20 00:42:04,619 - INFO - Processed 118000000 reads so far
2011-05-20 00:42:13,609 - INFO - Processed 118100000 reads so far
2011-05-20 00:42:25,347 - INFO - Processed 118200000 reads so far
2011-05-20 00:42:34,930 - INFO - Processed 118300000 reads so far
2011-05-20 00:42:45,081 - INFO - Processed 118400000 reads so far
2011-05-20 00:42:56,421 - INFO - Processed 118500000 reads so far
2011-05-20 00:43:06,471 - INFO - Processed 118600000 reads so far
2011-05-20 00:43:15,764 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:82990145-103010145
2011-05-20 00:43:17,912 - INFO - Processed 118700000 reads so far
2011-05-20 00:43:29,119 - INFO - Processed 118800000 reads so far
2011-05-20 00:43:38,722 - INFO - Processed 118900000 reads so far
2011-05-20 00:43:48,483 - INFO - Processed 119000000 reads so far
2011-05-20 00:43:56,464 - INFO - Processed 119100000 reads so far
2011-05-20 00:44:08,317 - INFO - Processed 119200000 reads so far
2011-05-20 00:44:17,650 - INFO - Processed 119300000 reads so far
2011-05-20 00:44:30,608 - INFO - Processed 119400000 reads so far
2011-05-20 00:44:42,423 - INFO - Processed 119500000 reads so far
2011-05-20 00:44:52,197 - INFO - Processed 119600000 reads so far
2011-05-20 00:45:02,345 - INFO - Processed 119700000 reads so far
2011-05-20 00:45:14,859 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:102990194-123010194
2011-05-20 00:45:15,003 - INFO - Processed 119800000 reads so far
2011-05-20 00:45:24,166 - INFO - Processed 119900000 reads so far
2011-05-20 00:45:32,128 - INFO - Processed 120000000 reads so far
2011-05-20 00:45:44,487 - INFO - Processed 120100000 reads so far
2011-05-20 00:45:55,295 - INFO - Processed 120200000 reads so far
2011-05-20 00:46:06,863 - INFO - Processed 120300000 reads so far
2011-05-20 00:46:19,895 - INFO - Processed 120400000 reads so far
2011-05-20 00:46:31,286 - INFO - Processed 120500000 reads so far
2011-05-20 00:46:42,704 - INFO - Processed 120600000 reads so far
2011-05-20 00:46:53,768 - INFO - Processed 120700000 reads so far
2011-05-20 00:47:04,557 - INFO - Processed 120800000 reads so far
2011-05-20 00:47:15,971 - INFO - Processed 120900000 reads so far
2011-05-20 00:47:27,299 - INFO - Processed 121000000 reads so far
2011-05-20 00:47:28,537 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:122990224-143010224
2011-05-20 00:47:39,553 - INFO - Processed 121100000 reads so far
2011-05-20 00:47:50,809 - INFO - Processed 121200000 reads so far
2011-05-20 00:48:02,416 - INFO - Processed 121300000 reads so far
2011-05-20 00:48:13,447 - INFO - Processed 121400000 reads so far
2011-05-20 00:48:24,573 - INFO - Processed 121500000 reads so far
2011-05-20 00:48:36,239 - INFO - Processed 121600000 reads so far
2011-05-20 00:48:46,344 - INFO - Processed 121700000 reads so far
2011-05-20 00:48:56,636 - INFO - Processed 121800000 reads so far
2011-05-20 00:49:07,439 - INFO - Processed 121900000 reads so far
2011-05-20 00:49:16,191 - INFO - Processed 122000000 reads so far
2011-05-20 00:49:27,826 - INFO - Processed 122100000 reads so far
2011-05-20 00:49:39,776 - INFO - Processed 122200000 reads so far
2011-05-20 00:49:41,259 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:142990226-163010226
2011-05-20 00:49:51,290 - INFO - Processed 122300000 reads so far
2011-05-20 00:50:03,310 - INFO - Processed 122400000 reads so far
2011-05-20 00:50:21,652 - INFO - Processed 122500000 reads so far
2011-05-20 00:50:34,729 - INFO - Processed 122600000 reads so far
2011-05-20 00:50:46,025 - INFO - Processed 122700000 reads so far
2011-05-20 00:50:53,909 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5_random:0-20010095
2011-05-20 00:50:54,456 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:2989985-23009985
2011-05-20 00:50:55,364 - INFO - Processed 122800000 reads so far
2011-05-20 00:51:05,192 - INFO - Processed 122900000 reads so far
2011-05-20 00:51:14,924 - INFO - Processed 123000000 reads so far
2011-05-20 00:51:25,238 - INFO - Processed 123100000 reads so far
2011-05-20 00:51:35,510 - INFO - Processed 123200000 reads so far
2011-05-20 00:51:44,400 - INFO - Processed 123300000 reads so far
2011-05-20 00:51:54,715 - INFO - Processed 123400000 reads so far
2011-05-20 00:52:04,598 - INFO - Processed 123500000 reads so far
2011-05-20 00:52:14,190 - INFO - Processed 123600000 reads so far
2011-05-20 00:52:26,976 - INFO - Processed 123700000 reads so far
2011-05-20 00:52:38,857 - INFO - Processed 123800000 reads so far
2011-05-20 00:52:48,942 - INFO - Processed 123900000 reads so far
2011-05-20 00:52:52,978 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:22989993-43009993
2011-05-20 00:52:56,863 - INFO - Processed 124000000 reads so far
2011-05-20 00:53:05,397 - INFO - Processed 124100000 reads so far
2011-05-20 00:53:12,691 - INFO - Processed 124200000 reads so far
2011-05-20 00:53:21,737 - INFO - Processed 124300000 reads so far
2011-05-20 00:53:30,300 - INFO - Processed 124400000 reads so far
2011-05-20 00:53:43,301 - INFO - Processed 124500000 reads so far
2011-05-20 00:53:54,498 - INFO - Processed 124600000 reads so far
2011-05-20 00:54:04,425 - INFO - Processed 124700000 reads so far
2011-05-20 00:54:14,933 - INFO - Processed 124800000 reads so far
2011-05-20 00:54:24,857 - INFO - Processed 124900000 reads so far
2011-05-20 00:54:32,997 - INFO - Processed 125000000 reads so far
2011-05-20 00:54:42,438 - INFO - Processed 125100000 reads so far
2011-05-20 00:54:46,146 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:42990009-63010009
2011-05-20 00:54:50,851 - INFO - Processed 125200000 reads so far
2011-05-20 00:54:59,763 - INFO - Processed 125300000 reads so far
2011-05-20 00:55:07,229 - INFO - Processed 125400000 reads so far
2011-05-20 00:55:16,064 - INFO - Processed 125500000 reads so far
2011-05-20 00:55:29,357 - INFO - Processed 125600000 reads so far
2011-05-20 00:55:41,710 - INFO - Processed 125700000 reads so far
2011-05-20 00:55:53,376 - INFO - Processed 125800000 reads so far
2011-05-20 00:56:04,925 - INFO - Processed 125900000 reads so far
2011-05-20 00:56:19,645 - INFO - Processed 126000000 reads so far
2011-05-20 00:56:30,428 - INFO - Processed 126100000 reads so far
2011-05-20 00:56:41,558 - INFO - Processed 126200000 reads so far
2011-05-20 00:56:54,472 - INFO - Processed 126300000 reads so far
2011-05-20 00:57:02,714 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:62990024-83010024
2011-05-20 00:57:07,542 - INFO - Processed 126400000 reads so far
2011-05-20 00:57:18,842 - INFO - Processed 126500000 reads so far
2011-05-20 00:57:31,391 - INFO - Processed 126600000 reads so far
2011-05-20 00:57:43,753 - INFO - Processed 126700000 reads so far
2011-05-20 00:57:55,604 - INFO - Processed 126800000 reads so far
2011-05-20 00:58:09,584 - INFO - Processed 126900000 reads so far
2011-05-20 00:58:21,309 - INFO - Processed 127000000 reads so far
2011-05-20 00:58:32,601 - INFO - Processed 127100000 reads so far
2011-05-20 00:58:42,199 - INFO - Processed 127200000 reads so far
2011-05-20 00:58:51,899 - INFO - Processed 127300000 reads so far
2011-05-20 00:59:00,992 - INFO - Processed 127400000 reads so far
2011-05-20 00:59:14,624 - INFO - Processed 127500000 reads so far
2011-05-20 00:59:15,160 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:82990025-103010025
2011-05-20 00:59:25,189 - INFO - Processed 127600000 reads so far
2011-05-20 00:59:35,083 - INFO - Processed 127700000 reads so far
2011-05-20 00:59:47,314 - INFO - Processed 127800000 reads so far
2011-05-20 00:59:59,268 - INFO - Processed 127900000 reads so far
2011-05-20 01:00:09,331 - INFO - Processed 128000000 reads so far
2011-05-20 01:00:19,034 - INFO - Processed 128100000 reads so far
2011-05-20 01:00:29,861 - INFO - Processed 128200000 reads so far
2011-05-20 01:00:39,423 - INFO - Processed 128300000 reads so far
2011-05-20 01:00:52,512 - INFO - Processed 128400000 reads so far
2011-05-20 01:01:01,482 - INFO - Processed 128500000 reads so far
2011-05-20 01:01:10,600 - INFO - Processed 128600000 reads so far
2011-05-20 01:01:25,279 - INFO - Processed 128700000 reads so far
2011-05-20 01:01:27,396 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:102990035-123010035
2011-05-20 01:01:36,073 - INFO - Processed 128800000 reads so far
2011-05-20 01:01:43,262 - INFO - Processed 128900000 reads so far
2011-05-20 01:01:52,439 - INFO - Processed 129000000 reads so far
2011-05-20 01:02:02,152 - INFO - Processed 129100000 reads so far
2011-05-20 01:02:13,302 - INFO - Processed 129200000 reads so far
2011-05-20 01:02:23,407 - INFO - Processed 129300000 reads so far
2011-05-20 01:02:31,147 - INFO - Processed 129400000 reads so far
2011-05-20 01:02:45,937 - INFO - Processed 129500000 reads so far
2011-05-20 01:02:55,236 - INFO - Processed 129600000 reads so far
2011-05-20 01:03:04,988 - INFO - Processed 129700000 reads so far
2011-05-20 01:03:12,302 - INFO - Processed 129800000 reads so far
2011-05-20 01:03:21,141 - INFO - Processed 129900000 reads so far
2011-05-20 01:03:31,243 - INFO - Processed 130000000 reads so far
2011-05-20 01:03:40,199 - INFO - Processed 130100000 reads so far
2011-05-20 01:03:49,887 - INFO - Processed 130200000 reads so far
2011-05-20 01:04:01,050 - INFO - Processed 130300000 reads so far
2011-05-20 01:04:10,496 - INFO - Processed 130400000 reads so far
2011-05-20 01:04:18,930 - INFO - Processed 130500000 reads so far
2011-05-20 01:04:27,794 - INFO - Processed 130600000 reads so far
2011-05-20 01:04:36,903 - INFO - Processed 130700000 reads so far
2011-05-20 01:04:48,798 - INFO - Processed 130800000 reads so far
2011-05-20 01:04:58,662 - INFO - Processed 130900000 reads so far
2011-05-20 01:05:11,335 - INFO - Processed 131000000 reads so far
2011-05-20 01:05:14,113 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:122990040-143010040
2011-05-20 01:05:20,627 - INFO - Processed 131100000 reads so far
2011-05-20 01:05:30,081 - INFO - Processed 131200000 reads so far
2011-05-20 01:05:41,119 - INFO - Processed 131300000 reads so far
2011-05-20 01:05:48,683 - INFO - Processed 131400000 reads so far
2011-05-20 01:05:58,422 - INFO - Processed 131500000 reads so far
2011-05-20 01:06:09,415 - INFO - Processed 131600000 reads so far
2011-05-20 01:06:22,023 - INFO - Processed 131700000 reads so far
2011-05-20 01:06:34,310 - INFO - Processed 131800000 reads so far
2011-05-20 01:06:45,598 - INFO - Processed 131900000 reads so far
2011-05-20 01:06:58,104 - INFO - Processed 132000000 reads so far
2011-05-20 01:07:09,398 - INFO - Processed 132100000 reads so far
2011-05-20 01:07:22,060 - INFO - Processed 132200000 reads so far
2011-05-20 01:07:28,629 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:142990056-163010056
2011-05-20 01:07:33,390 - INFO - Processed 132300000 reads so far
2011-05-20 01:07:42,939 - INFO - Processed 132400000 reads so far
2011-05-20 01:07:51,318 - INFO - Processed 132500000 reads so far
2011-05-20 01:07:59,776 - INFO - Processed 132600000 reads so far
2011-05-20 01:08:05,054 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:2990140-23010140
2011-05-20 01:08:10,955 - INFO - Processed 132700000 reads so far
2011-05-20 01:08:23,882 - INFO - Processed 132800000 reads so far
2011-05-20 01:08:34,866 - INFO - Processed 132900000 reads so far
2011-05-20 01:08:45,059 - INFO - Processed 133000000 reads so far
2011-05-20 01:08:55,340 - INFO - Processed 133100000 reads so far
2011-05-20 01:09:06,580 - INFO - Processed 133200000 reads so far
2011-05-20 01:09:15,369 - INFO - Processed 133300000 reads so far
2011-05-20 01:09:25,985 - INFO - Processed 133400000 reads so far
2011-05-20 01:09:39,324 - INFO - Processed 133500000 reads so far
2011-05-20 01:09:55,766 - INFO - Processed 133600000 reads so far
2011-05-20 01:10:37,136 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:22990174-43010174
2011-05-20 01:10:46,971 - INFO - Processed 133700000 reads so far
2011-05-20 01:11:46,722 - INFO - Processed 133800000 reads so far
2011-05-20 01:12:38,551 - INFO - Processed 133900000 reads so far
2011-05-20 01:13:12,272 - INFO - Processed 134000000 reads so far
2011-05-20 01:13:27,627 - INFO - Processed 134100000 reads so far
2011-05-20 01:13:38,234 - INFO - Processed 134200000 reads so far
2011-05-20 01:13:52,708 - INFO - Processed 134300000 reads so far
2011-05-20 01:14:04,036 - INFO - Processed 134400000 reads so far
2011-05-20 01:14:15,147 - INFO - Processed 134500000 reads so far
2011-05-20 01:14:27,496 - INFO - Processed 134600000 reads so far
2011-05-20 01:14:29,317 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:46351875-66371875
2011-05-20 01:14:35,845 - INFO - Processed 134700000 reads so far
2011-05-20 01:14:44,284 - INFO - Processed 134800000 reads so far
2011-05-20 01:14:53,578 - INFO - Processed 134900000 reads so far
2011-05-20 01:15:01,925 - INFO - Processed 135000000 reads so far
2011-05-20 01:15:12,906 - INFO - Processed 135100000 reads so far
2011-05-20 01:15:24,988 - INFO - Processed 135200000 reads so far
2011-05-20 01:15:38,174 - INFO - Processed 135300000 reads so far
2011-05-20 01:15:49,040 - INFO - Processed 135400000 reads so far
2011-05-20 01:16:01,083 - INFO - Processed 135500000 reads so far
2011-05-20 01:16:12,372 - INFO - Processed 135600000 reads so far
2011-05-20 01:16:23,364 - INFO - Processed 135700000 reads so far
2011-05-20 01:16:32,823 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:66351888-86371888
2011-05-20 01:16:36,080 - INFO - Processed 135800000 reads so far
2011-05-20 01:16:46,978 - INFO - Processed 135900000 reads so far
2011-05-20 01:16:58,220 - INFO - Processed 136000000 reads so far
2011-05-20 01:17:10,574 - INFO - Processed 136100000 reads so far
2011-05-20 01:17:21,485 - INFO - Processed 136200000 reads so far
2011-05-20 01:17:30,278 - INFO - Processed 136300000 reads so far
2011-05-20 01:17:44,220 - INFO - Processed 136400000 reads so far
2011-05-20 01:17:55,514 - INFO - Processed 136500000 reads so far
2011-05-20 01:18:08,193 - INFO - Processed 136600000 reads so far
2011-05-20 01:18:19,449 - INFO - Processed 136700000 reads so far
2011-05-20 01:18:30,231 - INFO - Processed 136800000 reads so far
2011-05-20 01:18:41,200 - INFO - Processed 136900000 reads so far
2011-05-20 01:18:53,237 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:86351900-106371900
2011-05-20 01:18:53,729 - INFO - Processed 137000000 reads so far
2011-05-20 01:19:05,075 - INFO - Processed 137100000 reads so far
2011-05-20 01:19:16,800 - INFO - Processed 137200000 reads so far
2011-05-20 01:19:27,792 - INFO - Processed 137300000 reads so far
2011-05-20 01:19:36,242 - INFO - Processed 137400000 reads so far
2011-05-20 01:19:47,728 - INFO - Processed 137500000 reads so far
2011-05-20 01:20:04,742 - INFO - Processed 137600000 reads so far
2011-05-20 01:20:16,262 - INFO - Processed 137700000 reads so far
2011-05-20 01:20:29,479 - INFO - Processed 137800000 reads so far
2011-05-20 01:20:40,581 - INFO - Processed 137900000 reads so far
2011-05-20 01:20:52,081 - INFO - Processed 138000000 reads so far
2011-05-20 01:21:03,289 - INFO - Processed 138100000 reads so far
2011-05-20 01:21:12,837 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:106351906-126371906
2011-05-20 01:21:16,182 - INFO - Processed 138200000 reads so far
2011-05-20 01:21:28,312 - INFO - Processed 138300000 reads so far
2011-05-20 01:21:42,130 - INFO - Processed 138400000 reads so far
2011-05-20 01:21:53,466 - INFO - Processed 138500000 reads so far
2011-05-20 01:22:03,612 - INFO - Processed 138600000 reads so far
2011-05-20 01:22:14,794 - INFO - Processed 138700000 reads so far
2011-05-20 01:22:24,246 - INFO - Processed 138800000 reads so far
2011-05-20 01:22:34,996 - INFO - Processed 138900000 reads so far
2011-05-20 01:22:43,840 - INFO - Processed 139000000 reads so far
2011-05-20 01:22:54,137 - INFO - Processed 139100000 reads so far
2011-05-20 01:23:01,369 - INFO - Processed 139200000 reads so far
2011-05-20 01:23:09,406 - INFO - Processed 139300000 reads so far
2011-05-20 01:23:16,080 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:126351912-146371912
2011-05-20 01:23:19,372 - INFO - Processed 139400000 reads so far
2011-05-20 01:23:29,933 - INFO - Processed 139500000 reads so far
2011-05-20 01:23:38,838 - INFO - Processed 139600000 reads so far
2011-05-20 01:23:46,722 - INFO - Processed 139700000 reads so far
2011-05-20 01:23:57,449 - INFO - Processed 139800000 reads so far
2011-05-20 01:24:06,232 - INFO - Processed 139900000 reads so far
2011-05-20 01:24:14,761 - INFO - Processed 140000000 reads so far
2011-05-20 01:24:22,160 - INFO - Processed 140100000 reads so far
2011-05-20 01:24:33,848 - INFO - Processed 140200000 reads so far
2011-05-20 01:24:44,428 - INFO - Processed 140300000 reads so far
2011-05-20 01:24:54,678 - INFO - Processed 140400000 reads so far
2011-05-20 01:25:04,914 - INFO - Processed 140500000 reads so far
2011-05-20 01:25:17,368 - INFO - Processed 140600000 reads so far
2011-05-20 01:25:17,723 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:146351916-166371916
2011-05-20 01:25:26,974 - INFO - Processed 140700000 reads so far
2011-05-20 01:25:35,665 - INFO - Processed 140800000 reads so far
2011-05-20 01:25:46,551 - INFO - Processed 140900000 reads so far
2011-05-20 01:25:56,320 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7_random:0-20010038
2011-05-20 01:25:56,513 - INFO - Processed 141000000 reads so far
2011-05-20 01:25:57,074 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:2990014-23010014
2011-05-20 01:26:03,553 - INFO - Processed 141100000 reads so far
2011-05-20 01:26:12,814 - INFO - Processed 141200000 reads so far
2011-05-20 01:26:23,734 - INFO - Processed 141300000 reads so far
2011-05-20 01:26:34,611 - INFO - Processed 141400000 reads so far
2011-05-20 01:26:45,147 - INFO - Processed 141500000 reads so far
2011-05-20 01:26:57,131 - INFO - Processed 141600000 reads so far
2011-05-20 01:27:06,597 - INFO - Processed 141700000 reads so far
2011-05-20 01:27:13,427 - INFO - Processed 141800000 reads so far
2011-05-20 01:27:23,426 - INFO - Processed 141900000 reads so far
2011-05-20 01:27:31,325 - INFO - Processed 142000000 reads so far
2011-05-20 01:27:37,898 - INFO - Processed 142100000 reads so far
2011-05-20 01:27:45,277 - INFO - Processed 142200000 reads so far
2011-05-20 01:27:53,653 - INFO - Processed 142300000 reads so far
2011-05-20 01:28:04,948 - INFO - Processed 142400000 reads so far
2011-05-20 01:28:10,597 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:22990022-43010022
2011-05-20 01:28:14,417 - INFO - Processed 142500000 reads so far
2011-05-20 01:28:27,003 - INFO - Processed 142600000 reads so far
2011-05-20 01:28:40,815 - INFO - Processed 142700000 reads so far
2011-05-20 01:28:53,113 - INFO - Processed 142800000 reads so far
2011-05-20 01:29:04,341 - INFO - Processed 142900000 reads so far
2011-05-20 01:29:15,812 - INFO - Processed 143000000 reads so far
2011-05-20 01:29:24,352 - INFO - Processed 143100000 reads so far
2011-05-20 01:29:33,442 - INFO - Processed 143200000 reads so far
2011-05-20 01:29:42,492 - INFO - Processed 143300000 reads so far
2011-05-20 01:29:51,630 - INFO - Processed 143400000 reads so far
2011-05-20 01:30:02,547 - INFO - Processed 143500000 reads so far
2011-05-20 01:30:12,321 - INFO - Processed 143600000 reads so far
2011-05-20 01:30:15,632 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:42990048-63010048
2011-05-20 01:30:21,677 - INFO - Processed 143700000 reads so far
2011-05-20 01:30:32,294 - INFO - Processed 143800000 reads so far
2011-05-20 01:30:42,478 - INFO - Processed 143900000 reads so far
2011-05-20 01:30:50,093 - INFO - Processed 144000000 reads so far
2011-05-20 01:30:59,250 - INFO - Processed 144100000 reads so far
2011-05-20 01:31:09,051 - INFO - Processed 144200000 reads so far
2011-05-20 01:31:18,827 - INFO - Processed 144300000 reads so far
2011-05-20 01:31:37,888 - INFO - Processed 144400000 reads so far
2011-05-20 01:31:48,561 - INFO - Processed 144500000 reads so far
2011-05-20 01:32:00,864 - INFO - Processed 144600000 reads so far
2011-05-20 01:32:11,201 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:62990054-83010054
2011-05-20 01:32:14,045 - INFO - Processed 144700000 reads so far
2011-05-20 01:32:25,593 - INFO - Processed 144800000 reads so far
2011-05-20 01:32:34,128 - INFO - Processed 144900000 reads so far
2011-05-20 01:32:46,712 - INFO - Processed 145000000 reads so far
2011-05-20 01:32:57,968 - INFO - Processed 145100000 reads so far
2011-05-20 01:33:07,722 - INFO - Processed 145200000 reads so far
2011-05-20 01:33:18,530 - INFO - Processed 145300000 reads so far
2011-05-20 01:33:28,918 - INFO - Processed 145400000 reads so far
2011-05-20 01:33:38,079 - INFO - Processed 145500000 reads so far
2011-05-20 01:33:49,760 - INFO - Processed 145600000 reads so far
2011-05-20 01:33:58,554 - INFO - Processed 145700000 reads so far
2011-05-20 01:34:08,417 - INFO - Processed 145800000 reads so far
2011-05-20 01:34:16,455 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:82990085-103010085
2011-05-20 01:34:19,391 - INFO - Processed 145900000 reads so far
2011-05-20 01:34:31,081 - INFO - Processed 146000000 reads so far
2011-05-20 01:34:39,498 - INFO - Processed 146100000 reads so far
2011-05-20 01:34:49,659 - INFO - Processed 146200000 reads so far
2011-05-20 01:35:00,203 - INFO - Processed 146300000 reads so far
2011-05-20 01:35:10,195 - INFO - Processed 146400000 reads so far
2011-05-20 01:35:19,190 - INFO - Processed 146500000 reads so far
2011-05-20 01:35:29,946 - INFO - Processed 146600000 reads so far
2011-05-20 01:35:39,680 - INFO - Processed 146700000 reads so far
2011-05-20 01:35:51,272 - INFO - Processed 146800000 reads so far
2011-05-20 01:36:00,179 - INFO - Processed 146900000 reads so far
2011-05-20 01:36:08,019 - INFO - Processed 147000000 reads so far
2011-05-20 01:36:13,365 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:102990120-123010120
2011-05-20 01:36:16,934 - INFO - Processed 147100000 reads so far
2011-05-20 01:36:27,464 - INFO - Processed 147200000 reads so far
2011-05-20 01:36:36,973 - INFO - Processed 147300000 reads so far
2011-05-20 01:36:47,593 - INFO - Processed 147400000 reads so far
2011-05-20 01:36:57,389 - INFO - Processed 147500000 reads so far
2011-05-20 01:37:08,050 - INFO - Processed 147600000 reads so far
2011-05-20 01:37:16,689 - INFO - Processed 147700000 reads so far
2011-05-20 01:37:25,404 - INFO - Processed 147800000 reads so far
2011-05-20 01:37:35,338 - INFO - Processed 147900000 reads so far
2011-05-20 01:37:45,001 - INFO - Processed 148000000 reads so far
2011-05-20 01:37:54,993 - INFO - Processed 148100000 reads so far
2011-05-20 01:38:03,713 - INFO - Processed 148200000 reads so far
2011-05-20 01:38:09,023 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:122990134-143010134
2011-05-20 01:38:12,984 - INFO - Processed 148300000 reads so far
2011-05-20 01:38:23,831 - INFO - Processed 148400000 reads so far
2011-05-20 01:38:34,821 - INFO - Processed 148500000 reads so far
2011-05-20 01:38:45,718 - INFO - Processed 148600000 reads so far
2011-05-20 01:38:56,062 - INFO - Processed 148700000 reads so far
2011-05-20 01:39:07,071 - INFO - Processed 148800000 reads so far
2011-05-20 01:39:07,289 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8_random:0-20010056
2011-05-20 01:39:16,683 - INFO - Processed 148900000 reads so far
2011-05-20 01:39:25,165 - INFO - Processed 149000000 reads so far
2011-05-20 01:39:26,149 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:2989965-23009965
2011-05-20 01:39:33,893 - INFO - Processed 149100000 reads so far
2011-05-20 01:39:43,938 - INFO - Processed 149200000 reads so far
2011-05-20 01:39:53,206 - INFO - Processed 149300000 reads so far
2011-05-20 01:40:01,518 - INFO - Processed 149400000 reads so far
2011-05-20 01:40:08,250 - INFO - Processed 149500000 reads so far
2011-05-20 01:40:15,830 - INFO - Processed 149600000 reads so far
2011-05-20 01:40:25,234 - INFO - Processed 149700000 reads so far
2011-05-20 01:40:35,043 - INFO - Processed 149800000 reads so far
2011-05-20 01:40:42,280 - INFO - Processed 149900000 reads so far
2011-05-20 01:40:50,494 - INFO - Processed 150000000 reads so far
2011-05-20 01:41:00,395 - INFO - Processed 150100000 reads so far
2011-05-20 01:41:09,275 - INFO - Processed 150200000 reads so far
2011-05-20 01:41:15,936 - INFO - Processed 150300000 reads so far
2011-05-20 01:41:23,045 - INFO - Processed 150400000 reads so far
2011-05-20 01:41:31,684 - INFO - Processed 150500000 reads so far
2011-05-20 01:41:38,757 - INFO - Processed 150600000 reads so far
2011-05-20 01:41:46,529 - INFO - Processed 150700000 reads so far
2011-05-20 01:41:52,967 - INFO - Processed 150800000 reads so far
2011-05-20 01:42:00,054 - INFO - Processed 150900000 reads so far
2011-05-20 01:42:08,242 - INFO - Processed 151000000 reads so far
2011-05-20 01:42:16,869 - INFO - Processed 151100000 reads so far
2011-05-20 01:42:24,331 - INFO - Processed 151200000 reads so far
2011-05-20 01:42:31,245 - INFO - Processed 151300000 reads so far
2011-05-20 01:42:38,624 - INFO - Processed 151400000 reads so far
2011-05-20 01:42:46,122 - INFO - Processed 151500000 reads so far
2011-05-20 01:42:52,532 - INFO - Processed 151600000 reads so far
2011-05-20 01:43:02,861 - INFO - Processed 151700000 reads so far
2011-05-20 01:43:10,602 - INFO - Processed 151800000 reads so far
2011-05-20 01:43:17,263 - INFO - Processed 151900000 reads so far
2011-05-20 01:43:24,606 - INFO - Processed 152000000 reads so far
2011-05-20 01:43:32,293 - INFO - Processed 152100000 reads so far
2011-05-20 01:43:39,924 - INFO - Processed 152200000 reads so far
2011-05-20 01:43:47,044 - INFO - Processed 152300000 reads so far
2011-05-20 01:43:55,815 - INFO - Processed 152400000 reads so far
2011-05-20 01:44:02,928 - INFO - Processed 152500000 reads so far
2011-05-20 01:44:09,596 - INFO - Processed 152600000 reads so far
2011-05-20 01:44:18,566 - INFO - Processed 152700000 reads so far
2011-05-20 01:44:26,604 - INFO - Processed 152800000 reads so far
2011-05-20 01:44:33,465 - INFO - Processed 152900000 reads so far
2011-05-20 01:44:40,131 - INFO - Processed 153000000 reads so far
2011-05-20 01:44:47,221 - INFO - Processed 153100000 reads so far
2011-05-20 01:44:55,396 - INFO - Processed 153200000 reads so far
2011-05-20 01:45:02,555 - INFO - Processed 153300000 reads so far
2011-05-20 01:45:09,358 - INFO - Processed 153400000 reads so far
2011-05-20 01:45:16,492 - INFO - Processed 153500000 reads so far
2011-05-20 01:45:25,505 - INFO - Processed 153600000 reads so far
2011-05-20 01:45:33,979 - INFO - Processed 153700000 reads so far
2011-05-20 01:45:40,209 - INFO - Processed 153800000 reads so far
2011-05-20 01:45:45,743 - INFO - Processed 153900000 reads so far
2011-05-20 01:45:52,950 - INFO - Processed 154000000 reads so far
2011-05-20 01:45:59,082 - INFO - Processed 154100000 reads so far
2011-05-20 01:46:07,340 - INFO - Processed 154200000 reads so far
2011-05-20 01:46:15,163 - INFO - Processed 154300000 reads so far
2011-05-20 01:46:24,123 - INFO - Processed 154400000 reads so far
2011-05-20 01:46:32,194 - INFO - Processed 154500000 reads so far
2011-05-20 01:46:40,640 - INFO - Processed 154600000 reads so far
2011-05-20 01:46:49,489 - INFO - Processed 154700000 reads so far
2011-05-20 01:46:56,186 - INFO - Processed 154800000 reads so far
2011-05-20 01:47:03,194 - INFO - Processed 154900000 reads so far
2011-05-20 01:47:10,772 - INFO - Processed 155000000 reads so far
2011-05-20 01:47:18,651 - INFO - Processed 155100000 reads so far
2011-05-20 01:47:27,139 - INFO - Processed 155200000 reads so far
2011-05-20 01:47:35,346 - INFO - Processed 155300000 reads so far
2011-05-20 01:47:43,062 - INFO - Processed 155400000 reads so far
2011-05-20 01:47:50,855 - INFO - Processed 155500000 reads so far
2011-05-20 01:47:58,719 - INFO - Processed 155600000 reads so far
2011-05-20 01:48:09,041 - INFO - Processed 155700000 reads so far
2011-05-20 01:48:19,199 - INFO - Processed 155800000 reads so far
2011-05-20 01:48:28,764 - INFO - Processed 155900000 reads so far
2011-05-20 01:48:40,903 - INFO - Processed 156000000 reads so far
2011-05-20 01:48:51,389 - INFO - Processed 156100000 reads so far
2011-05-20 01:49:01,106 - INFO - Processed 156200000 reads so far
2011-05-20 01:49:10,382 - INFO - Processed 156300000 reads so far
2011-05-20 01:49:17,099 - INFO - Processed 156400000 reads so far
2011-05-20 01:49:23,649 - INFO - Processed 156500000 reads so far
2011-05-20 01:49:30,979 - INFO - Processed 156600000 reads so far
2011-05-20 01:49:38,877 - INFO - Processed 156700000 reads so far
2011-05-20 01:49:48,298 - INFO - Processed 156800000 reads so far
2011-05-20 01:49:56,322 - INFO - Processed 156900000 reads so far
2011-05-20 01:50:08,056 - INFO - Processed 157000000 reads so far
2011-05-20 01:50:17,587 - INFO - Processed 157100000 reads so far
2011-05-20 01:50:26,077 - INFO - Processed 157200000 reads so far
2011-05-20 01:50:35,364 - INFO - Processed 157300000 reads so far
2011-05-20 01:50:45,968 - INFO - Processed 157400000 reads so far
2011-05-20 01:50:55,914 - INFO - Processed 157500000 reads so far
2011-05-20 01:51:05,745 - INFO - Processed 157600000 reads so far
2011-05-20 01:51:17,667 - INFO - Processed 157700000 reads so far
2011-05-20 01:51:28,013 - INFO - Processed 157800000 reads so far
2011-05-20 01:51:37,394 - INFO - Processed 157900000 reads so far
2011-05-20 01:51:47,089 - INFO - Processed 158000000 reads so far
2011-05-20 01:51:55,485 - INFO - Processed 158100000 reads so far
2011-05-20 01:52:04,152 - INFO - Processed 158200000 reads so far
2011-05-20 01:52:08,387 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:22990018-43010018
2011-05-20 01:52:13,636 - INFO - Processed 158300000 reads so far
2011-05-20 01:52:24,575 - INFO - Processed 158400000 reads so far
2011-05-20 01:52:35,108 - INFO - Processed 158500000 reads so far
2011-05-20 01:52:42,972 - INFO - Processed 158600000 reads so far
2011-05-20 01:52:51,517 - INFO - Processed 158700000 reads so far
2011-05-20 01:53:03,372 - INFO - Processed 158800000 reads so far
2011-05-20 01:53:15,255 - INFO - Processed 158900000 reads so far
2011-05-20 01:53:24,686 - INFO - Processed 159000000 reads so far
2011-05-20 01:53:33,570 - INFO - Processed 159100000 reads so far
2011-05-20 01:53:42,412 - INFO - Processed 159200000 reads so far
2011-05-20 01:53:51,544 - INFO - Processed 159300000 reads so far
2011-05-20 01:54:00,499 - INFO - Processed 159400000 reads so far
2011-05-20 01:54:12,356 - INFO - Processed 159500000 reads so far
2011-05-20 01:54:21,103 - INFO - Processed 159600000 reads so far
2011-05-20 01:54:22,885 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:42990024-63010024
2011-05-20 01:54:29,843 - INFO - Processed 159700000 reads so far
2011-05-20 01:54:40,626 - INFO - Processed 159800000 reads so far
2011-05-20 01:54:53,096 - INFO - Processed 159900000 reads so far
2011-05-20 01:55:03,100 - INFO - Processed 160000000 reads so far
2011-05-20 01:55:11,828 - INFO - Processed 160100000 reads so far
2011-05-20 01:55:21,190 - INFO - Processed 160200000 reads so far
2011-05-20 01:55:31,037 - INFO - Processed 160300000 reads so far
2011-05-20 01:55:39,863 - INFO - Processed 160400000 reads so far
2011-05-20 01:55:47,957 - INFO - Processed 160500000 reads so far
2011-05-20 01:55:57,835 - INFO - Processed 160600000 reads so far
2011-05-20 01:56:10,262 - INFO - Processed 160700000 reads so far
2011-05-20 01:56:19,838 - INFO - Processed 160800000 reads so far
2011-05-20 01:56:23,433 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:62990052-83010052
2011-05-20 01:56:30,198 - INFO - Processed 160900000 reads so far
2011-05-20 01:56:42,028 - INFO - Processed 161000000 reads so far
2011-05-20 01:56:50,893 - INFO - Processed 161100000 reads so far
2011-05-20 01:56:59,658 - INFO - Processed 161200000 reads so far
2011-05-20 01:57:09,712 - INFO - Processed 161300000 reads so far
2011-05-20 01:57:18,244 - INFO - Processed 161400000 reads so far
2011-05-20 01:57:27,694 - INFO - Processed 161500000 reads so far
2011-05-20 01:57:36,836 - INFO - Processed 161600000 reads so far
2011-05-20 01:57:45,837 - INFO - Processed 161700000 reads so far
2011-05-20 01:57:55,012 - INFO - Processed 161800000 reads so far
2011-05-20 01:58:03,793 - INFO - Processed 161900000 reads so far
2011-05-20 01:58:12,016 - INFO - Processed 162000000 reads so far
2011-05-20 01:58:13,745 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:82990055-103010055
2011-05-20 01:58:21,273 - INFO - Processed 162100000 reads so far
2011-05-20 01:58:29,529 - INFO - Processed 162200000 reads so far
2011-05-20 01:58:36,949 - INFO - Processed 162300000 reads so far
2011-05-20 01:58:45,265 - INFO - Processed 162400000 reads so far
2011-05-20 01:58:53,297 - INFO - Processed 162500000 reads so far
2011-05-20 01:59:03,396 - INFO - Processed 162600000 reads so far
2011-05-20 01:59:11,544 - INFO - Processed 162700000 reads so far
2011-05-20 01:59:21,080 - INFO - Processed 162800000 reads so far
2011-05-20 01:59:28,675 - INFO - Processed 162900000 reads so far
2011-05-20 01:59:39,180 - INFO - Processed 163000000 reads so far
2011-05-20 01:59:48,669 - INFO - Processed 163100000 reads so far
2011-05-20 02:00:00,974 - INFO - Processed 163200000 reads so far
2011-05-20 02:00:03,134 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:102990081-123010081
2011-05-20 02:00:11,471 - INFO - Processed 163300000 reads so far
2011-05-20 02:00:19,673 - INFO - Processed 163400000 reads so far
2011-05-20 02:00:29,002 - INFO - Processed 163500000 reads so far
2011-05-20 02:00:37,747 - INFO - Processed 163600000 reads so far
2011-05-20 02:00:46,174 - INFO - Processed 163700000 reads so far
2011-05-20 02:00:55,337 - INFO - Processed 163800000 reads so far
2011-05-20 02:01:03,731 - INFO - Processed 163900000 reads so far
2011-05-20 02:01:12,531 - INFO - Processed 164000000 reads so far
2011-05-20 02:01:21,723 - INFO - Processed 164100000 reads so far
2011-05-20 02:01:35,445 - INFO - Processed 164200000 reads so far
2011-05-20 02:01:43,864 - INFO - Processed 164300000 reads so far
2011-05-20 02:01:52,837 - INFO - Processed 164400000 reads so far
2011-05-20 02:01:56,991 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:122990089-143010089
2011-05-20 02:02:00,696 - INFO - Processed 164500000 reads so far
2011-05-20 02:02:01,287 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9_random:0-20010007
2011-05-20 02:02:04,769 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrM:0-20010000
2011-05-20 02:02:08,014 - INFO - Processed 164600000 reads so far
2011-05-20 02:02:09,724 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrUn_random:0-20010001
2011-05-20 02:02:17,261 - INFO - Processed 164700000 reads so far
2011-05-20 02:02:24,535 - INFO - Processed 164800000 reads so far
2011-05-20 02:02:31,845 - INFO - Processed 164900000 reads so far
2011-05-20 02:02:39,935 - INFO - Processed 165000000 reads so far
2011-05-20 02:02:47,897 - INFO - Processed 165100000 reads so far
2011-05-20 02:02:49,674 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:2990014-23010014
2011-05-20 02:02:55,472 - INFO - Processed 165200000 reads so far
2011-05-20 02:03:04,582 - INFO - Processed 165300000 reads so far
2011-05-20 02:03:13,307 - INFO - Processed 165400000 reads so far
2011-05-20 02:03:22,758 - INFO - Processed 165500000 reads so far
2011-05-20 02:03:33,073 - INFO - Processed 165600000 reads so far
2011-05-20 02:03:42,481 - INFO - Processed 165700000 reads so far
2011-05-20 02:03:54,063 - INFO - Processed 165800000 reads so far
2011-05-20 02:04:04,872 - INFO - Processed 165900000 reads so far
2011-05-20 02:04:15,478 - INFO - Processed 166000000 reads so far
2011-05-20 02:04:26,248 - INFO - Processed 166100000 reads so far
2011-05-20 02:04:33,180 - INFO - Processed 166200000 reads so far
2011-05-20 02:04:42,930 - INFO - Processed 166300000 reads so far
2011-05-20 02:04:54,898 - INFO - Processed 166400000 reads so far
2011-05-20 02:05:05,907 - INFO - Processed 166500000 reads so far
2011-05-20 02:05:10,406 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:22990050-43010050
2011-05-20 02:05:16,515 - INFO - Processed 166600000 reads so far
2011-05-20 02:05:26,947 - INFO - Processed 166700000 reads so far
2011-05-20 02:05:38,089 - INFO - Processed 166800000 reads so far
2011-05-20 02:05:48,792 - INFO - Processed 166900000 reads so far
2011-05-20 02:05:57,969 - INFO - Processed 167000000 reads so far
2011-05-20 02:06:07,433 - INFO - Processed 167100000 reads so far
2011-05-20 02:06:17,420 - INFO - Processed 167200000 reads so far
2011-05-20 02:06:28,481 - INFO - Processed 167300000 reads so far
2011-05-20 02:06:39,265 - INFO - Processed 167400000 reads so far
2011-05-20 02:06:51,543 - INFO - Processed 167500000 reads so far
2011-05-20 02:07:02,097 - INFO - Processed 167600000 reads so far
2011-05-20 02:07:12,640 - INFO - Processed 167700000 reads so far
2011-05-20 02:07:23,943 - INFO - Processed 167800000 reads so far
2011-05-20 02:07:34,515 - INFO - Processed 167900000 reads so far
2011-05-20 02:07:37,732 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:42990054-63010054
2011-05-20 02:07:45,457 - INFO - Processed 168000000 reads so far
2011-05-20 02:07:56,379 - INFO - Processed 168100000 reads so far
2011-05-20 02:08:07,156 - INFO - Processed 168200000 reads so far
2011-05-20 02:08:17,846 - INFO - Processed 168300000 reads so far
2011-05-20 02:08:28,341 - INFO - Processed 168400000 reads so far
2011-05-20 02:08:38,956 - INFO - Processed 168500000 reads so far
2011-05-20 02:08:49,278 - INFO - Processed 168600000 reads so far
2011-05-20 02:08:59,741 - INFO - Processed 168700000 reads so far
2011-05-20 02:09:10,584 - INFO - Processed 168800000 reads so far
2011-05-20 02:09:21,452 - INFO - Processed 168900000 reads so far
2011-05-20 02:09:48,354 - INFO - Processed 169000000 reads so far
2011-05-20 02:10:13,569 - INFO - Processed 169100000 reads so far
2011-05-20 02:10:14,703 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:62990056-83010056
2011-05-20 02:10:28,290 - INFO - Processed 169200000 reads so far
2011-05-20 02:10:45,328 - INFO - Processed 169300000 reads so far
2011-05-20 02:10:53,825 - INFO - Processed 169400000 reads so far
2011-05-20 02:11:02,322 - INFO - Processed 169500000 reads so far
2011-05-20 02:11:10,523 - INFO - Processed 169600000 reads so far
2011-05-20 02:11:38,089 - INFO - Processed 169700000 reads so far
2011-05-20 02:11:55,366 - INFO - Processed 169800000 reads so far
2011-05-20 02:12:09,194 - INFO - Processed 169900000 reads so far
2011-05-20 02:12:19,725 - INFO - Processed 170000000 reads so far
2011-05-20 02:12:31,704 - INFO - Processed 170100000 reads so far
2011-05-20 02:12:53,357 - INFO - Processed 170200000 reads so far
2011-05-20 02:13:01,761 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:82990116-103010116
2011-05-20 02:13:05,215 - INFO - Processed 170300000 reads so far
2011-05-20 02:13:31,983 - INFO - Processed 170400000 reads so far
2011-05-20 02:13:46,706 - INFO - Processed 170500000 reads so far
2011-05-20 02:13:57,121 - INFO - Processed 170600000 reads so far
2011-05-20 02:14:14,052 - INFO - Processed 170700000 reads so far
2011-05-20 02:14:27,306 - INFO - Processed 170800000 reads so far
2011-05-20 02:14:38,406 - INFO - Processed 170900000 reads so far
2011-05-20 02:14:52,835 - INFO - Processed 171000000 reads so far
2011-05-20 02:15:09,645 - INFO - Processed 171100000 reads so far
2011-05-20 02:15:41,972 - INFO - Processed 171200000 reads so far
2011-05-20 02:15:50,923 - INFO - Processed 171300000 reads so far
2011-05-20 02:16:05,474 - INFO - Processed 171400000 reads so far
2011-05-20 02:16:07,743 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:102990118-123010118
2011-05-20 02:16:16,237 - INFO - Processed 171500000 reads so far
2011-05-20 02:16:27,111 - INFO - Processed 171600000 reads so far
2011-05-20 02:16:37,446 - INFO - Processed 171700000 reads so far
2011-05-20 02:16:45,816 - INFO - Processed 171800000 reads so far
2011-05-20 02:16:53,409 - INFO - Processed 171900000 reads so far
2011-05-20 02:17:01,512 - INFO - Processed 172000000 reads so far
2011-05-20 02:17:10,761 - INFO - Processed 172100000 reads so far
2011-05-20 02:17:19,311 - INFO - Processed 172200000 reads so far
2011-05-20 02:17:28,160 - INFO - Processed 172300000 reads so far
2011-05-20 02:17:36,837 - INFO - Processed 172400000 reads so far
2011-05-20 02:17:46,067 - INFO - Processed 172500000 reads so far
2011-05-20 02:17:47,677 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:122990120-143010120
2011-05-20 02:17:53,382 - INFO - Processed 172600000 reads so far
2011-05-20 02:18:02,617 - INFO - Processed 172700000 reads so far
2011-05-20 02:18:09,457 - INFO - Processed 172800000 reads so far
2011-05-20 02:18:17,397 - INFO - Processed 172900000 reads so far
2011-05-20 02:18:24,330 - INFO - Processed 173000000 reads so far
2011-05-20 02:18:31,629 - INFO - Processed 173100000 reads so far
2011-05-20 02:18:39,937 - INFO - Processed 173200000 reads so far
2011-05-20 02:18:47,659 - INFO - Processed 173300000 reads so far
2011-05-20 02:18:56,810 - INFO - Processed 173400000 reads so far
2011-05-20 02:19:05,077 - INFO - Processed 173500000 reads so far
2011-05-20 02:19:11,629 - INFO - Processed 173600000 reads so far
2011-05-20 02:19:19,797 - INFO - Processed 173700000 reads so far
2011-05-20 02:19:26,453 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:142990139-163010139
2011-05-20 02:19:30,936 - INFO - Processed 173800000 reads so far
2011-05-20 02:19:41,379 - INFO - Processed 173900000 reads so far
2011-05-20 02:19:52,493 - INFO - Processed 174000000 reads so far
2011-05-20 02:20:05,452 - INFO - Processed 174100000 reads so far
2011-05-20 02:20:16,579 - INFO - Processed 174200000 reads so far
2011-05-20 02:20:25,089 - INFO - Processed 174300000 reads so far
2011-05-20 02:20:32,549 - INFO - Processed 174400000 reads so far
2011-05-20 02:20:42,929 - INFO - Processed 174500000 reads so far
2011-05-20 02:20:53,301 - INFO - Processed 174600000 reads so far
2011-05-20 02:21:02,166 - INFO - Processed 174700000 reads so far
2011-05-20 02:21:11,788 - INFO - Processed 174800000 reads so far
2011-05-20 02:21:20,515 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:162990143-183010143
2011-05-20 02:21:21,711 - INFO - Processed 174900000 reads so far
2011-05-20 02:21:31,226 - INFO - Processed 175000000 reads so far
2011-05-20 02:21:41,156 - INFO - Processed 175100000 reads so far
2011-05-20 02:21:52,099 - INFO - Processed 175200000 reads so far
2011-05-20 02:21:52,831 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX_random:0-20010000
2011-05-20 02:22:00,928 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY:10529-20030529
2011-05-20 02:22:02,331 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:50657-20070657
2011-05-20 02:22:02,697 - INFO - Processed 175300000 reads so far
2011-05-20 02:22:04,191 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:20164520-40184520
2011-05-20 02:22:05,655 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:40171086-60191086
2011-05-20 02:22:09,680 - INFO - Processed 175400000 reads so far
2011-05-20 02:22:14,002 - INFO - Processed 175500000 reads so far
2011-05-20 02:22:20,044 - INFO - Processed 175600000 reads so far
2011-05-20 02:22:24,638 - INFO - Processed 175700000 reads so far
2011-05-20 02:22:28,693 - INFO - Processed 175800000 reads so far
2011-05-20 02:22:32,662 - INFO - Processed 175900000 reads so far
2011-05-20 02:22:36,634 - INFO - Processed 176000000 reads so far
2011-05-20 02:22:40,891 - INFO - Processed 176100000 reads so far
2011-05-20 02:22:44,877 - INFO - Processed 176200000 reads so far
2011-05-20 02:22:49,245 - INFO - Processed 176300000 reads so far
2011-05-20 02:22:53,533 - INFO - Processed 176400000 reads so far
2011-05-20 02:22:57,945 - INFO - Processed 176500000 reads so far
2011-05-20 02:23:02,830 - INFO - Processed 176600000 reads so far
2011-05-20 02:23:05,542 - INFO - Processed 176700000 reads so far
2011-05-20 02:23:09,537 - INFO - Processed 176800000 reads so far
2011-05-20 02:23:13,505 - INFO - Processed 176900000 reads so far
2011-05-20 02:23:17,479 - INFO - Processed 177000000 reads so far
2011-05-20 02:23:21,449 - INFO - Processed 177100000 reads so far
2011-05-20 02:23:25,421 - INFO - Processed 177200000 reads so far
2011-05-20 02:23:29,602 - INFO - Processed 177300000 reads so far
2011-05-20 02:23:33,832 - INFO - Processed 177400000 reads so far
2011-05-20 02:23:39,396 - INFO - Processed 177500000 reads so far
2011-05-20 02:23:43,766 - INFO - Processed 177600000 reads so far
2011-05-20 02:23:47,873 - INFO - Processed 177700000 reads so far
2011-05-20 02:23:48,020 - INFO - Finished loading data. Outputting QC metrics
2011-05-20 02:24:17,621 - INFO - Finished outputting QC metrics
2011-05-20 02:24:17,721 - INFO - Finished generating QC metrics