2011-05-20 02:24:18,008 - INFO - Generating QC metrics for BAM File ['WTCHG_11820.bam']
2011-05-20 02:24:18,008 - INFO - Output will go to WTCHG_11820.qc.txt.tmp
2011-05-20 02:24:18,008 - INFO - Reading GC Map from file /data/Genomes/gcMap/Mouse37.gcMap.gz
2011-05-20 02:27:26,764 - INFO - Finished reading GC Map
2011-05-20 02:27:26,764 - INFO - Reading CDS from exon definition file /data/Genomes/annotation/Mouse37.refGene.txt.gz
2011-05-20 02:27:29,096 - INFO - Read 382138 exons (33804740 nucleotides) for 32 chromosomes
2011-05-20 02:27:29,097 - INFO - Computing coverage cut-off
2011-05-20 02:27:29,097 - INFO - Retrieving BAM file coverage info from samtools pileup
2011-05-20 02:27:33,398 - INFO - Processed 1000000 pile-up sites
2011-05-20 02:27:37,488 - INFO - Processed 2000000 pile-up sites
2011-05-20 02:27:41,430 - INFO - Processed 3000000 pile-up sites
2011-05-20 02:27:45,867 - INFO - Processed 4000000 pile-up sites
2011-05-20 02:27:50,588 - INFO - Processed 5000000 pile-up sites
2011-05-20 02:27:55,284 - INFO - Processed 6000000 pile-up sites
2011-05-20 02:27:59,515 - INFO - Processed 7000000 pile-up sites
2011-05-20 02:28:03,318 - INFO - Processed 8000000 pile-up sites
2011-05-20 02:28:06,533 - INFO - Processed 9000000 pile-up sites
2011-05-20 02:28:11,041 - INFO - Processed 10000000 pile-up sites
2011-05-20 02:28:14,855 - INFO - Processed 11000000 pile-up sites
2011-05-20 02:28:19,002 - INFO - Processed 12000000 pile-up sites
2011-05-20 02:28:23,494 - INFO - Processed 13000000 pile-up sites
2011-05-20 02:28:27,213 - INFO - Processed 14000000 pile-up sites
2011-05-20 02:28:30,252 - INFO - Processed 15000000 pile-up sites
2011-05-20 02:28:33,113 - INFO - Processed 16000000 pile-up sites
2011-05-20 02:28:35,516 - INFO - Processed 17000000 pile-up sites
2011-05-20 02:28:38,758 - INFO - Processed 18000000 pile-up sites
2011-05-20 02:28:44,778 - INFO - Processed 19000000 pile-up sites
2011-05-20 02:28:49,268 - INFO - Processed 20000000 pile-up sites
2011-05-20 02:28:51,768 - INFO - Processed 21000000 pile-up sites
2011-05-20 02:28:54,102 - INFO - Processed 22000000 pile-up sites
2011-05-20 02:28:56,420 - INFO - Processed 23000000 pile-up sites
2011-05-20 02:28:58,736 - INFO - Processed 24000000 pile-up sites
2011-05-20 02:29:01,046 - INFO - Processed 25000000 pile-up sites
2011-05-20 02:29:03,357 - INFO - Processed 26000000 pile-up sites
2011-05-20 02:29:05,684 - INFO - Processed 27000000 pile-up sites
2011-05-20 02:29:09,665 - INFO - Processed 28000000 pile-up sites
2011-05-20 02:29:13,964 - INFO - Processed 29000000 pile-up sites
2011-05-20 02:29:18,753 - INFO - Processed 30000000 pile-up sites
2011-05-20 02:29:23,103 - INFO - Processed 31000000 pile-up sites
2011-05-20 02:29:27,155 - INFO - Processed 32000000 pile-up sites
2011-05-20 02:29:31,608 - INFO - Processed 33000000 pile-up sites
2011-05-20 02:29:35,975 - INFO - Processed 34000000 pile-up sites
2011-05-20 02:29:40,410 - INFO - Finished processing pile-up on 34968788 sites (200000002 nucleotides)
2011-05-20 02:29:40,410 - INFO - Coverage cut-off value is 38
2011-05-20 02:29:40,410 - INFO - Loading data into QC data manager
2011-05-20 02:29:40,679 - INFO - Reading data from BAM file WTCHG_11820.bam. All reads in file will be read
2011-05-20 02:29:40,723 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:2990010-23010010
2011-05-20 02:29:51,358 - INFO - Processed 100000 reads so far
2011-05-20 02:30:01,787 - INFO - Processed 200000 reads so far
2011-05-20 02:30:12,122 - INFO - Processed 300000 reads so far
2011-05-20 02:30:21,997 - INFO - Processed 400000 reads so far
2011-05-20 02:30:28,823 - INFO - Processed 500000 reads so far
2011-05-20 02:30:37,459 - INFO - Processed 600000 reads so far
2011-05-20 02:30:48,319 - INFO - Processed 700000 reads so far
2011-05-20 02:30:59,118 - INFO - Processed 800000 reads so far
2011-05-20 02:31:07,304 - INFO - Processed 900000 reads so far
2011-05-20 02:31:18,195 - INFO - Processed 1000000 reads so far
2011-05-20 02:31:28,141 - INFO - Processed 1100000 reads so far
2011-05-20 02:31:33,637 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:22990025-43010025
2011-05-20 02:31:38,901 - INFO - Processed 1200000 reads so far
2011-05-20 02:31:49,172 - INFO - Processed 1300000 reads so far
2011-05-20 02:31:59,721 - INFO - Processed 1400000 reads so far
2011-05-20 02:32:10,544 - INFO - Processed 1500000 reads so far
2011-05-20 02:32:20,067 - INFO - Processed 1600000 reads so far
2011-05-20 02:32:30,969 - INFO - Processed 1700000 reads so far
2011-05-20 02:32:41,792 - INFO - Processed 1800000 reads so far
2011-05-20 02:32:52,451 - INFO - Processed 1900000 reads so far
2011-05-20 02:33:02,071 - INFO - Processed 2000000 reads so far
2011-05-20 02:33:14,106 - INFO - Processed 2100000 reads so far
2011-05-20 02:33:24,931 - INFO - Processed 2200000 reads so far
2011-05-20 02:33:28,474 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:42990030-63010030
2011-05-20 02:33:36,244 - INFO - Processed 2300000 reads so far
2011-05-20 02:33:47,182 - INFO - Processed 2400000 reads so far
2011-05-20 02:33:57,740 - INFO - Processed 2500000 reads so far
2011-05-20 02:34:06,710 - INFO - Processed 2600000 reads so far
2011-05-20 02:34:18,128 - INFO - Processed 2700000 reads so far
2011-05-20 02:34:25,424 - INFO - Processed 2800000 reads so far
2011-05-20 02:34:34,116 - INFO - Processed 2900000 reads so far
2011-05-20 02:34:42,332 - INFO - Processed 3000000 reads so far
2011-05-20 02:34:49,418 - INFO - Processed 3100000 reads so far
2011-05-20 02:34:58,717 - INFO - Processed 3200000 reads so far
2011-05-20 02:35:09,157 - INFO - Processed 3300000 reads so far
2011-05-20 02:35:12,201 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:62990034-83010034
2011-05-20 02:35:19,943 - INFO - Processed 3400000 reads so far
2011-05-20 02:35:30,571 - INFO - Processed 3500000 reads so far
2011-05-20 02:35:41,408 - INFO - Processed 3600000 reads so far
2011-05-20 02:35:52,154 - INFO - Processed 3700000 reads so far
2011-05-20 02:36:03,041 - INFO - Processed 3800000 reads so far
2011-05-20 02:36:13,707 - INFO - Processed 3900000 reads so far
2011-05-20 02:36:24,694 - INFO - Processed 4000000 reads so far
2011-05-20 02:36:33,290 - INFO - Processed 4100000 reads so far
2011-05-20 02:36:41,900 - INFO - Processed 4200000 reads so far
2011-05-20 02:36:54,220 - INFO - Processed 4300000 reads so far
2011-05-20 02:37:04,854 - INFO - Processed 4400000 reads so far
2011-05-20 02:37:10,998 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:82990052-103010052
2011-05-20 02:37:14,504 - INFO - Processed 4500000 reads so far
2011-05-20 02:37:24,375 - INFO - Processed 4600000 reads so far
2011-05-20 02:37:34,475 - INFO - Processed 4700000 reads so far
2011-05-20 02:37:43,353 - INFO - Processed 4800000 reads so far
2011-05-20 02:37:51,560 - INFO - Processed 4900000 reads so far
2011-05-20 02:38:02,340 - INFO - Processed 5000000 reads so far
2011-05-20 02:38:12,493 - INFO - Processed 5100000 reads so far
2011-05-20 02:38:20,491 - INFO - Processed 5200000 reads so far
2011-05-20 02:38:30,159 - INFO - Processed 5300000 reads so far
2011-05-20 02:38:38,857 - INFO - Processed 5400000 reads so far
2011-05-20 02:38:48,171 - INFO - Processed 5500000 reads so far
2011-05-20 02:38:54,712 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:102990056-123010056
2011-05-20 02:38:56,394 - INFO - Processed 5600000 reads so far
2011-05-20 02:39:07,032 - INFO - Processed 5700000 reads so far
2011-05-20 02:39:16,752 - INFO - Processed 5800000 reads so far
2011-05-20 02:39:25,763 - INFO - Processed 5900000 reads so far
2011-05-20 02:39:34,543 - INFO - Processed 6000000 reads so far
2011-05-20 02:39:43,570 - INFO - Processed 6100000 reads so far
2011-05-20 02:39:54,167 - INFO - Processed 6200000 reads so far
2011-05-20 02:40:02,197 - INFO - Processed 6300000 reads so far
2011-05-20 02:40:10,990 - INFO - Processed 6400000 reads so far
2011-05-20 02:40:19,098 - INFO - Processed 6500000 reads so far
2011-05-20 02:40:27,688 - INFO - Processed 6600000 reads so far
2011-05-20 02:40:31,743 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:122990159-143010159
2011-05-20 02:40:35,817 - INFO - Processed 6700000 reads so far
2011-05-20 02:40:44,688 - INFO - Processed 6800000 reads so far
2011-05-20 02:40:51,777 - INFO - Processed 6900000 reads so far
2011-05-20 02:41:00,973 - INFO - Processed 7000000 reads so far
2011-05-20 02:41:05,385 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:2990003-23010003
2011-05-20 02:41:10,880 - INFO - Processed 7100000 reads so far
2011-05-20 02:41:18,598 - INFO - Processed 7200000 reads so far
2011-05-20 02:41:29,174 - INFO - Processed 7300000 reads so far
2011-05-20 02:41:37,786 - INFO - Processed 7400000 reads so far
2011-05-20 02:41:48,075 - INFO - Processed 7500000 reads so far
2011-05-20 02:41:56,317 - INFO - Processed 7600000 reads so far
2011-05-20 02:42:05,201 - INFO - Processed 7700000 reads so far
2011-05-20 02:42:13,691 - INFO - Processed 7800000 reads so far
2011-05-20 02:42:24,774 - INFO - Processed 7900000 reads so far
2011-05-20 02:42:36,001 - INFO - Processed 8000000 reads so far
2011-05-20 02:42:47,449 - INFO - Processed 8100000 reads so far
2011-05-20 02:42:57,839 - INFO - Processed 8200000 reads so far
2011-05-20 02:43:06,725 - INFO - Processed 8300000 reads so far
2011-05-20 02:43:09,598 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:22990007-43010007
2011-05-20 02:43:14,664 - INFO - Processed 8400000 reads so far
2011-05-20 02:43:22,384 - INFO - Processed 8500000 reads so far
2011-05-20 02:43:30,454 - INFO - Processed 8600000 reads so far
2011-05-20 02:43:41,093 - INFO - Processed 8700000 reads so far
2011-05-20 02:43:49,454 - INFO - Processed 8800000 reads so far
2011-05-20 02:44:00,694 - INFO - Processed 8900000 reads so far
2011-05-20 02:44:10,647 - INFO - Processed 9000000 reads so far
2011-05-20 02:44:19,703 - INFO - Processed 9100000 reads so far
2011-05-20 02:44:30,834 - INFO - Processed 9200000 reads so far
2011-05-20 02:44:39,771 - INFO - Processed 9300000 reads so far
2011-05-20 02:44:50,177 - INFO - Processed 9400000 reads so far
2011-05-20 02:44:53,185 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:42990012-63010012
2011-05-20 02:44:59,381 - INFO - Processed 9500000 reads so far
2011-05-20 02:45:10,454 - INFO - Processed 9600000 reads so far
2011-05-20 02:45:18,435 - INFO - Processed 9700000 reads so far
2011-05-20 02:45:26,587 - INFO - Processed 9800000 reads so far
2011-05-20 02:45:35,009 - INFO - Processed 9900000 reads so far
2011-05-20 02:45:44,176 - INFO - Processed 10000000 reads so far
2011-05-20 02:45:53,270 - INFO - Processed 10100000 reads so far
2011-05-20 02:46:01,978 - INFO - Processed 10200000 reads so far
2011-05-20 02:46:11,352 - INFO - Processed 10300000 reads so far
2011-05-20 02:46:20,989 - INFO - Processed 10400000 reads so far
2011-05-20 02:46:29,596 - INFO - Processed 10500000 reads so far
2011-05-20 02:46:40,539 - INFO - Processed 10600000 reads so far
2011-05-20 02:46:41,225 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:62990037-83010037
2011-05-20 02:46:54,082 - INFO - Processed 10700000 reads so far
2011-05-20 02:47:03,495 - INFO - Processed 10800000 reads so far
2011-05-20 02:47:12,795 - INFO - Processed 10900000 reads so far
2011-05-20 02:48:01,048 - INFO - Processed 11000000 reads so far
2011-05-20 02:48:10,730 - INFO - Processed 11100000 reads so far
2011-05-20 02:48:22,757 - INFO - Processed 11200000 reads so far
2011-05-20 02:48:31,273 - INFO - Processed 11300000 reads so far
2011-05-20 02:48:40,614 - INFO - Processed 11400000 reads so far
2011-05-20 02:48:50,381 - INFO - Processed 11500000 reads so far
2011-05-20 02:49:01,586 - INFO - Processed 11600000 reads so far
2011-05-20 02:49:11,180 - INFO - Processed 11700000 reads so far
2011-05-20 02:49:19,350 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:82990043-103010043
2011-05-20 02:49:22,216 - INFO - Processed 11800000 reads so far
2011-05-20 02:49:32,764 - INFO - Processed 11900000 reads so far
2011-05-20 02:49:44,257 - INFO - Processed 12000000 reads so far
2011-05-20 02:49:55,519 - INFO - Processed 12100000 reads so far
2011-05-20 02:50:05,051 - INFO - Processed 12200000 reads so far
2011-05-20 02:50:16,662 - INFO - Processed 12300000 reads so far
2011-05-20 02:50:27,177 - INFO - Processed 12400000 reads so far
2011-05-20 02:50:38,682 - INFO - Processed 12500000 reads so far
2011-05-20 02:50:48,594 - INFO - Processed 12600000 reads so far
2011-05-20 02:50:59,549 - INFO - Processed 12700000 reads so far
2011-05-20 02:51:10,417 - INFO - Processed 12800000 reads so far
2011-05-20 02:51:19,679 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:102990046-123010046
2011-05-20 02:51:20,559 - INFO - Processed 12900000 reads so far
2011-05-20 02:51:28,298 - INFO - Processed 13000000 reads so far
2011-05-20 02:51:37,052 - INFO - Processed 13100000 reads so far
2011-05-20 02:51:48,004 - INFO - Processed 13200000 reads so far
2011-05-20 02:51:56,508 - INFO - Processed 13300000 reads so far
2011-05-20 02:52:07,429 - INFO - Processed 13400000 reads so far
2011-05-20 02:52:14,913 - INFO - Processed 13500000 reads so far
2011-05-20 02:52:24,724 - INFO - Processed 13600000 reads so far
2011-05-20 02:52:34,297 - INFO - Processed 13700000 reads so far
2011-05-20 02:52:43,644 - INFO - Processed 13800000 reads so far
2011-05-20 02:52:54,652 - INFO - Processed 13900000 reads so far
2011-05-20 02:53:05,233 - INFO - Processed 14000000 reads so far
2011-05-20 02:53:06,906 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:2990030-23010030
2011-05-20 02:53:14,708 - INFO - Processed 14100000 reads so far
2011-05-20 02:53:24,970 - INFO - Processed 14200000 reads so far
2011-05-20 02:53:33,568 - INFO - Processed 14300000 reads so far
2011-05-20 02:53:43,378 - INFO - Processed 14400000 reads so far
2011-05-20 02:53:52,600 - INFO - Processed 14500000 reads so far
2011-05-20 02:54:03,523 - INFO - Processed 14600000 reads so far
2011-05-20 02:54:15,089 - INFO - Processed 14700000 reads so far
2011-05-20 02:54:26,201 - INFO - Processed 14800000 reads so far
2011-05-20 02:54:34,414 - INFO - Processed 14900000 reads so far
2011-05-20 02:54:44,326 - INFO - Processed 15000000 reads so far
2011-05-20 02:54:54,537 - INFO - Processed 15100000 reads so far
2011-05-20 02:55:01,082 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:22990080-43010080
2011-05-20 02:55:04,530 - INFO - Processed 15200000 reads so far
2011-05-20 02:55:15,085 - INFO - Processed 15300000 reads so far
2011-05-20 02:55:46,400 - INFO - Processed 15400000 reads so far
2011-05-20 02:55:55,347 - INFO - Processed 15500000 reads so far
2011-05-20 02:56:05,727 - INFO - Processed 15600000 reads so far
2011-05-20 02:56:14,720 - INFO - Processed 15700000 reads so far
2011-05-20 02:56:24,885 - INFO - Processed 15800000 reads so far
2011-05-20 02:56:34,946 - INFO - Processed 15900000 reads so far
2011-05-20 02:56:45,534 - INFO - Processed 16000000 reads so far
2011-05-20 02:56:55,459 - INFO - Processed 16100000 reads so far
2011-05-20 02:57:05,933 - INFO - Processed 16200000 reads so far
2011-05-20 02:57:07,358 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:42990081-63010081
2011-05-20 02:57:15,701 - INFO - Processed 16300000 reads so far
2011-05-20 02:57:26,193 - INFO - Processed 16400000 reads so far
2011-05-20 02:57:35,123 - INFO - Processed 16500000 reads so far
2011-05-20 02:57:47,402 - INFO - Processed 16600000 reads so far
2011-05-20 02:57:57,178 - INFO - Processed 16700000 reads so far
2011-05-20 02:58:04,261 - INFO - Processed 16800000 reads so far
2011-05-20 02:58:13,895 - INFO - Processed 16900000 reads so far
2011-05-20 02:58:24,537 - INFO - Processed 17000000 reads so far
2011-05-20 02:58:33,502 - INFO - Processed 17100000 reads so far
2011-05-20 02:58:41,206 - INFO - Processed 17200000 reads so far
2011-05-20 02:58:46,509 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:62990102-83010102
2011-05-20 02:58:51,149 - INFO - Processed 17300000 reads so far
2011-05-20 02:59:02,159 - INFO - Processed 17400000 reads so far
2011-05-20 02:59:10,104 - INFO - Processed 17500000 reads so far
2011-05-20 02:59:20,099 - INFO - Processed 17600000 reads so far
2011-05-20 02:59:30,537 - INFO - Processed 17700000 reads so far
2011-05-20 02:59:39,313 - INFO - Processed 17800000 reads so far
2011-05-20 02:59:50,109 - INFO - Processed 17900000 reads so far
2011-05-20 02:59:58,715 - INFO - Processed 18000000 reads so far
2011-05-20 03:00:09,569 - INFO - Processed 18100000 reads so far
2011-05-20 03:00:18,213 - INFO - Processed 18200000 reads so far
2011-05-20 03:00:27,818 - INFO - Processed 18300000 reads so far
2011-05-20 03:00:32,284 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:82990130-103010130
2011-05-20 03:00:37,440 - INFO - Processed 18400000 reads so far
2011-05-20 03:00:47,247 - INFO - Processed 18500000 reads so far
2011-05-20 03:00:56,663 - INFO - Processed 18600000 reads so far
2011-05-20 03:01:04,891 - INFO - Processed 18700000 reads so far
2011-05-20 03:01:14,868 - INFO - Processed 18800000 reads so far
2011-05-20 03:01:25,371 - INFO - Processed 18900000 reads so far
2011-05-20 03:01:38,532 - INFO - Processed 19000000 reads so far
2011-05-20 03:01:49,340 - INFO - Processed 19100000 reads so far
2011-05-20 03:01:58,658 - INFO - Processed 19200000 reads so far
2011-05-20 03:02:07,745 - INFO - Processed 19300000 reads so far
2011-05-20 03:02:18,308 - INFO - Processed 19400000 reads so far
2011-05-20 03:02:25,198 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:102990135-123010135
2011-05-20 03:02:26,604 - INFO - Processed 19500000 reads so far
2011-05-20 03:02:36,130 - INFO - Processed 19600000 reads so far
2011-05-20 03:02:46,560 - INFO - Processed 19700000 reads so far
2011-05-20 03:02:53,614 - INFO - Processed 19800000 reads so far
2011-05-20 03:03:01,615 - INFO - Processed 19900000 reads so far
2011-05-20 03:03:10,848 - INFO - Processed 20000000 reads so far
2011-05-20 03:03:19,420 - INFO - Processed 20100000 reads so far
2011-05-20 03:03:27,530 - INFO - Processed 20200000 reads so far
2011-05-20 03:03:37,804 - INFO - Processed 20300000 reads so far
2011-05-20 03:03:48,419 - INFO - Processed 20400000 reads so far
2011-05-20 03:03:58,310 - INFO - Processed 20500000 reads so far
2011-05-20 03:04:05,995 - INFO - Processed 20600000 reads so far
2011-05-20 03:04:06,006 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:2990064-23010064
2011-05-20 03:04:14,788 - INFO - Processed 20700000 reads so far
2011-05-20 03:04:26,054 - INFO - Processed 20800000 reads so far
2011-05-20 03:04:34,520 - INFO - Processed 20900000 reads so far
2011-05-20 03:04:44,572 - INFO - Processed 21000000 reads so far
2011-05-20 03:04:53,816 - INFO - Processed 21100000 reads so far
2011-05-20 03:05:04,258 - INFO - Processed 21200000 reads so far
2011-05-20 03:05:14,792 - INFO - Processed 21300000 reads so far
2011-05-20 03:05:25,570 - INFO - Processed 21400000 reads so far
2011-05-20 03:05:35,867 - INFO - Processed 21500000 reads so far
2011-05-20 03:05:45,797 - INFO - Processed 21600000 reads so far
2011-05-20 03:05:54,080 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:22990152-43010152
2011-05-20 03:05:58,484 - INFO - Processed 21700000 reads so far
2011-05-20 03:06:09,277 - INFO - Processed 21800000 reads so far
2011-05-20 03:06:18,992 - INFO - Processed 21900000 reads so far
2011-05-20 03:06:27,780 - INFO - Processed 22000000 reads so far
2011-05-20 03:06:37,083 - INFO - Processed 22100000 reads so far
2011-05-20 03:06:46,163 - INFO - Processed 22200000 reads so far
2011-05-20 03:06:56,698 - INFO - Processed 22300000 reads so far
2011-05-20 03:07:07,189 - INFO - Processed 22400000 reads so far
2011-05-20 03:07:14,238 - INFO - Processed 22500000 reads so far
2011-05-20 03:07:24,524 - INFO - Processed 22600000 reads so far
2011-05-20 03:07:32,930 - INFO - Processed 22700000 reads so far
2011-05-20 03:07:41,787 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:42990183-63010183
2011-05-20 03:07:42,535 - INFO - Processed 22800000 reads so far
2011-05-20 03:07:52,564 - INFO - Processed 22900000 reads so far
2011-05-20 03:08:02,407 - INFO - Processed 23000000 reads so far
2011-05-20 03:08:12,886 - INFO - Processed 23100000 reads so far
2011-05-20 03:08:23,122 - INFO - Processed 23200000 reads so far
2011-05-20 03:08:32,669 - INFO - Processed 23300000 reads so far
2011-05-20 03:08:42,177 - INFO - Processed 23400000 reads so far
2011-05-20 03:08:52,039 - INFO - Processed 23500000 reads so far
2011-05-20 03:09:02,725 - INFO - Processed 23600000 reads so far
2011-05-20 03:09:13,312 - INFO - Processed 23700000 reads so far
2011-05-20 03:09:23,682 - INFO - Processed 23800000 reads so far
2011-05-20 03:09:33,956 - INFO - Processed 23900000 reads so far
2011-05-20 03:09:41,232 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:62990184-83010184
2011-05-20 03:09:42,988 - INFO - Processed 24000000 reads so far
2011-05-20 03:09:52,100 - INFO - Processed 24100000 reads so far
2011-05-20 03:10:01,317 - INFO - Processed 24200000 reads so far
2011-05-20 03:10:13,380 - INFO - Processed 24300000 reads so far
2011-05-20 03:10:22,084 - INFO - Processed 24400000 reads so far
2011-05-20 03:10:33,039 - INFO - Processed 24500000 reads so far
2011-05-20 03:10:41,576 - INFO - Processed 24600000 reads so far
2011-05-20 03:10:50,532 - INFO - Processed 24700000 reads so far
2011-05-20 03:11:00,357 - INFO - Processed 24800000 reads so far
2011-05-20 03:11:09,919 - INFO - Processed 24900000 reads so far
2011-05-20 03:11:19,398 - INFO - Processed 25000000 reads so far
2011-05-20 03:11:30,690 - INFO - Processed 25100000 reads so far
2011-05-20 03:11:34,361 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:82990199-103010199
2011-05-20 03:11:42,022 - INFO - Processed 25200000 reads so far
2011-05-20 03:11:54,312 - INFO - Processed 25300000 reads so far
2011-05-20 03:12:06,484 - INFO - Processed 25400000 reads so far
2011-05-20 03:12:17,866 - INFO - Processed 25500000 reads so far
2011-05-20 03:12:29,019 - INFO - Processed 25600000 reads so far
2011-05-20 03:12:40,210 - INFO - Processed 25700000 reads so far
2011-05-20 03:12:52,584 - INFO - Processed 25800000 reads so far
2011-05-20 03:13:03,524 - INFO - Processed 25900000 reads so far
2011-05-20 03:13:14,743 - INFO - Processed 26000000 reads so far
2011-05-20 03:13:26,597 - INFO - Processed 26100000 reads so far
2011-05-20 03:13:36,991 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:102990204-123010204
2011-05-20 03:13:37,917 - INFO - Processed 26200000 reads so far
2011-05-20 03:13:49,413 - INFO - Processed 26300000 reads so far
2011-05-20 03:14:01,462 - INFO - Processed 26400000 reads so far
2011-05-20 03:14:13,105 - INFO - Processed 26500000 reads so far
2011-05-20 03:14:22,733 - INFO - Processed 26600000 reads so far
2011-05-20 03:14:32,056 - INFO - Processed 26700000 reads so far
2011-05-20 03:14:42,171 - INFO - Processed 26800000 reads so far
2011-05-20 03:14:53,002 - INFO - Processed 26900000 reads so far
2011-05-20 03:15:01,242 - INFO - Processed 27000000 reads so far
2011-05-20 03:15:11,517 - INFO - Processed 27100000 reads so far
2011-05-20 03:15:15,445 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13_random:0-20010000
2011-05-20 03:15:16,695 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:2990021-23010021
2011-05-20 03:15:22,302 - INFO - Processed 27200000 reads so far
2011-05-20 03:15:32,067 - INFO - Processed 27300000 reads so far
2011-05-20 03:15:42,180 - INFO - Processed 27400000 reads so far
2011-05-20 03:15:51,083 - INFO - Processed 27500000 reads so far
2011-05-20 03:15:59,464 - INFO - Processed 27600000 reads so far
2011-05-20 03:16:08,220 - INFO - Processed 27700000 reads so far
2011-05-20 03:16:18,790 - INFO - Processed 27800000 reads so far
2011-05-20 03:16:28,416 - INFO - Processed 27900000 reads so far
2011-05-20 03:16:36,888 - INFO - Processed 28000000 reads so far
2011-05-20 03:16:47,010 - INFO - Processed 28100000 reads so far
2011-05-20 03:16:56,747 - INFO - Processed 28200000 reads so far
2011-05-20 03:17:03,338 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:22990022-43010022
2011-05-20 03:17:06,402 - INFO - Processed 28300000 reads so far
2011-05-20 03:17:16,803 - INFO - Processed 28400000 reads so far
2011-05-20 03:17:26,138 - INFO - Processed 28500000 reads so far
2011-05-20 03:17:35,027 - INFO - Processed 28600000 reads so far
2011-05-20 03:17:43,608 - INFO - Processed 28700000 reads so far
2011-05-20 03:17:56,868 - INFO - Processed 28800000 reads so far
2011-05-20 03:18:05,615 - INFO - Processed 28900000 reads so far
2011-05-20 03:18:13,486 - INFO - Processed 29000000 reads so far
2011-05-20 03:18:20,148 - INFO - Processed 29100000 reads so far
2011-05-20 03:18:27,522 - INFO - Processed 29200000 reads so far
2011-05-20 03:18:34,904 - INFO - Processed 29300000 reads so far
2011-05-20 03:18:43,136 - INFO - Processed 29400000 reads so far
2011-05-20 03:18:45,634 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:42990034-63010034
2011-05-20 03:18:51,305 - INFO - Processed 29500000 reads so far
2011-05-20 03:19:00,806 - INFO - Processed 29600000 reads so far
2011-05-20 03:19:11,193 - INFO - Processed 29700000 reads so far
2011-05-20 03:19:20,821 - INFO - Processed 29800000 reads so far
2011-05-20 03:19:28,846 - INFO - Processed 29900000 reads so far
2011-05-20 03:19:36,857 - INFO - Processed 30000000 reads so far
2011-05-20 03:19:46,041 - INFO - Processed 30100000 reads so far
2011-05-20 03:19:55,131 - INFO - Processed 30200000 reads so far
2011-05-20 03:20:05,293 - INFO - Processed 30300000 reads so far
2011-05-20 03:20:12,973 - INFO - Processed 30400000 reads so far
2011-05-20 03:20:23,013 - INFO - Processed 30500000 reads so far
2011-05-20 03:20:28,507 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:62990042-83010042
2011-05-20 03:20:32,686 - INFO - Processed 30600000 reads so far
2011-05-20 03:20:43,186 - INFO - Processed 30700000 reads so far
2011-05-20 03:20:54,180 - INFO - Processed 30800000 reads so far
2011-05-20 03:21:02,798 - INFO - Processed 30900000 reads so far
2011-05-20 03:21:11,409 - INFO - Processed 31000000 reads so far
2011-05-20 03:21:21,230 - INFO - Processed 31100000 reads so far
2011-05-20 03:21:30,117 - INFO - Processed 31200000 reads so far
2011-05-20 03:21:39,575 - INFO - Processed 31300000 reads so far
2011-05-20 03:21:47,295 - INFO - Processed 31400000 reads so far
2011-05-20 03:21:57,008 - INFO - Processed 31500000 reads so far
2011-05-20 03:22:07,203 - INFO - Processed 31600000 reads so far
2011-05-20 03:22:16,824 - INFO - Processed 31700000 reads so far
2011-05-20 03:22:18,209 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:82990051-103010051
2011-05-20 03:22:26,529 - INFO - Processed 31800000 reads so far
2011-05-20 03:22:35,361 - INFO - Processed 31900000 reads so far
2011-05-20 03:22:44,298 - INFO - Processed 32000000 reads so far
2011-05-20 03:22:53,082 - INFO - Processed 32100000 reads so far
2011-05-20 03:23:02,970 - INFO - Processed 32200000 reads so far
2011-05-20 03:23:13,315 - INFO - Processed 32300000 reads so far
2011-05-20 03:23:24,122 - INFO - Processed 32400000 reads so far
2011-05-20 03:23:33,144 - INFO - Processed 32500000 reads so far
2011-05-20 03:23:41,809 - INFO - Processed 32600000 reads so far
2011-05-20 03:23:52,389 - INFO - Processed 32700000 reads so far
2011-05-20 03:23:53,340 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:102990064-123010064
2011-05-20 03:24:02,551 - INFO - Processed 32800000 reads so far
2011-05-20 03:24:13,920 - INFO - Processed 32900000 reads so far
2011-05-20 03:24:24,807 - INFO - Processed 33000000 reads so far
2011-05-20 03:24:35,854 - INFO - Processed 33100000 reads so far
2011-05-20 03:24:46,241 - INFO - Processed 33200000 reads so far
2011-05-20 03:24:56,417 - INFO - Processed 33300000 reads so far
2011-05-20 03:25:07,047 - INFO - Processed 33400000 reads so far
2011-05-20 03:25:15,889 - INFO - Processed 33500000 reads so far
2011-05-20 03:25:25,226 - INFO - Processed 33600000 reads so far
2011-05-20 03:25:37,113 - INFO - Processed 33700000 reads so far
2011-05-20 03:25:43,028 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:122990077-143010077
2011-05-20 03:25:47,210 - INFO - Processed 33800000 reads so far
2011-05-20 03:25:55,890 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:2990028-23010028
2011-05-20 03:25:58,035 - INFO - Processed 33900000 reads so far
2011-05-20 03:26:06,523 - INFO - Processed 34000000 reads so far
2011-05-20 03:26:15,725 - INFO - Processed 34100000 reads so far
2011-05-20 03:26:26,494 - INFO - Processed 34200000 reads so far
2011-05-20 03:26:36,406 - INFO - Processed 34300000 reads so far
2011-05-20 03:26:46,475 - INFO - Processed 34400000 reads so far
2011-05-20 03:26:54,743 - INFO - Processed 34500000 reads so far
2011-05-20 03:27:03,496 - INFO - Processed 34600000 reads so far
2011-05-20 03:27:12,526 - INFO - Processed 34700000 reads so far
2011-05-20 03:27:20,223 - INFO - Processed 34800000 reads so far
2011-05-20 03:27:30,545 - INFO - Processed 34900000 reads so far
2011-05-20 03:27:33,107 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:22990033-43010033
2011-05-20 03:27:39,004 - INFO - Processed 35000000 reads so far
2011-05-20 03:27:49,354 - INFO - Processed 35100000 reads so far
2011-05-20 03:27:59,030 - INFO - Processed 35200000 reads so far
2011-05-20 03:28:09,269 - INFO - Processed 35300000 reads so far
2011-05-20 03:28:17,536 - INFO - Processed 35400000 reads so far
2011-05-20 03:28:27,485 - INFO - Processed 35500000 reads so far
2011-05-20 03:28:35,787 - INFO - Processed 35600000 reads so far
2011-05-20 03:28:46,471 - INFO - Processed 35700000 reads so far
2011-05-20 03:28:56,700 - INFO - Processed 35800000 reads so far
2011-05-20 03:29:04,797 - INFO - Processed 35900000 reads so far
2011-05-20 03:29:16,963 - INFO - Processed 36000000 reads so far
2011-05-20 03:29:21,758 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:42990037-63010037
2011-05-20 03:29:26,517 - INFO - Processed 36100000 reads so far
2011-05-20 03:29:34,220 - INFO - Processed 36200000 reads so far
2011-05-20 03:29:43,965 - INFO - Processed 36300000 reads so far
2011-05-20 03:29:53,946 - INFO - Processed 36400000 reads so far
2011-05-20 03:30:01,630 - INFO - Processed 36500000 reads so far
2011-05-20 03:30:10,429 - INFO - Processed 36600000 reads so far
2011-05-20 03:30:19,611 - INFO - Processed 36700000 reads so far
2011-05-20 03:30:29,557 - INFO - Processed 36800000 reads so far
2011-05-20 03:30:39,431 - INFO - Processed 36900000 reads so far
2011-05-20 03:30:49,533 - INFO - Processed 37000000 reads so far
2011-05-20 03:30:58,711 - INFO - Processed 37100000 reads so far
2011-05-20 03:31:00,299 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:62990067-83010067
2011-05-20 03:31:07,992 - INFO - Processed 37200000 reads so far
2011-05-20 03:31:16,838 - INFO - Processed 37300000 reads so far
2011-05-20 03:31:26,648 - INFO - Processed 37400000 reads so far
2011-05-20 03:31:36,649 - INFO - Processed 37500000 reads so far
2011-05-20 03:31:46,403 - INFO - Processed 37600000 reads so far
2011-05-20 03:31:57,308 - INFO - Processed 37700000 reads so far
2011-05-20 03:32:06,924 - INFO - Processed 37800000 reads so far
2011-05-20 03:32:17,131 - INFO - Processed 37900000 reads so far
2011-05-20 03:32:26,996 - INFO - Processed 38000000 reads so far
2011-05-20 03:32:37,978 - INFO - Processed 38100000 reads so far
2011-05-20 03:32:48,579 - INFO - Processed 38200000 reads so far
2011-05-20 03:33:00,975 - INFO - Processed 38300000 reads so far
2011-05-20 03:33:03,748 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:82990070-103010070
2011-05-20 03:33:11,580 - INFO - Processed 38400000 reads so far
2011-05-20 03:33:19,617 - INFO - Processed 38500000 reads so far
2011-05-20 03:33:30,422 - INFO - Processed 38600000 reads so far
2011-05-20 03:33:41,497 - INFO - Processed 38700000 reads so far
2011-05-20 03:33:54,186 - INFO - Processed 38800000 reads so far
2011-05-20 03:34:06,261 - INFO - Processed 38900000 reads so far
2011-05-20 03:34:17,804 - INFO - Processed 39000000 reads so far
2011-05-20 03:34:28,793 - INFO - Processed 39100000 reads so far
2011-05-20 03:34:41,476 - INFO - Processed 39200000 reads so far
2011-05-20 03:34:53,302 - INFO - Processed 39300000 reads so far
2011-05-20 03:35:04,223 - INFO - Processed 39400000 reads so far
2011-05-20 03:35:16,554 - INFO - Processed 39500000 reads so far
2011-05-20 03:35:17,621 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:102990119-123010119
2011-05-20 03:35:20,565 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:2990090-23010090
2011-05-20 03:35:26,795 - INFO - Processed 39600000 reads so far
2011-05-20 03:35:35,420 - INFO - Processed 39700000 reads so far
2011-05-20 03:35:44,884 - INFO - Processed 39800000 reads so far
2011-05-20 03:35:54,681 - INFO - Processed 39900000 reads so far
2011-05-20 03:36:03,288 - INFO - Processed 40000000 reads so far
2011-05-20 03:36:11,476 - INFO - Processed 40100000 reads so far
2011-05-20 03:36:20,479 - INFO - Processed 40200000 reads so far
2011-05-20 03:36:31,153 - INFO - Processed 40300000 reads so far
2011-05-20 03:36:40,768 - INFO - Processed 40400000 reads so far
2011-05-20 03:36:51,416 - INFO - Processed 40500000 reads so far
2011-05-20 03:37:03,175 - INFO - Processed 40600000 reads so far
2011-05-20 03:37:12,781 - INFO - Processed 40700000 reads so far
2011-05-20 03:37:19,152 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:22990121-43010121
2011-05-20 03:37:22,711 - INFO - Processed 40800000 reads so far
2011-05-20 03:37:30,665 - INFO - Processed 40900000 reads so far
2011-05-20 03:37:39,556 - INFO - Processed 41000000 reads so far
2011-05-20 03:37:49,861 - INFO - Processed 41100000 reads so far
2011-05-20 03:37:58,504 - INFO - Processed 41200000 reads so far
2011-05-20 03:38:09,582 - INFO - Processed 41300000 reads so far
2011-05-20 03:38:19,518 - INFO - Processed 41400000 reads so far
2011-05-20 03:38:27,731 - INFO - Processed 41500000 reads so far
2011-05-20 03:38:36,554 - INFO - Processed 41600000 reads so far
2011-05-20 03:38:46,029 - INFO - Processed 41700000 reads so far
2011-05-20 03:38:55,840 - INFO - Processed 41800000 reads so far
2011-05-20 03:39:03,642 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:42990150-63010150
2011-05-20 03:39:05,634 - INFO - Processed 41900000 reads so far
2011-05-20 03:39:16,520 - INFO - Processed 42000000 reads so far
2011-05-20 03:39:26,613 - INFO - Processed 42100000 reads so far
2011-05-20 03:39:36,271 - INFO - Processed 42200000 reads so far
2011-05-20 03:39:45,036 - INFO - Processed 42300000 reads so far
2011-05-20 03:39:54,820 - INFO - Processed 42400000 reads so far
2011-05-20 03:40:04,640 - INFO - Processed 42500000 reads so far
2011-05-20 03:40:14,255 - INFO - Processed 42600000 reads so far
2011-05-20 03:40:24,626 - INFO - Processed 42700000 reads so far
2011-05-20 03:40:32,883 - INFO - Processed 42800000 reads so far
2011-05-20 03:40:42,553 - INFO - Processed 42900000 reads so far
2011-05-20 03:40:46,562 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:62990159-83010159
2011-05-20 03:40:52,601 - INFO - Processed 43000000 reads so far
2011-05-20 03:41:01,174 - INFO - Processed 43100000 reads so far
2011-05-20 03:41:10,252 - INFO - Processed 43200000 reads so far
2011-05-20 03:41:19,087 - INFO - Processed 43300000 reads so far
2011-05-20 03:41:27,800 - INFO - Processed 43400000 reads so far
2011-05-20 03:41:37,365 - INFO - Processed 43500000 reads so far
2011-05-20 03:41:45,823 - INFO - Processed 43600000 reads so far
2011-05-20 03:41:54,397 - INFO - Processed 43700000 reads so far
2011-05-20 03:42:04,151 - INFO - Processed 43800000 reads so far
2011-05-20 03:42:15,418 - INFO - Processed 43900000 reads so far
2011-05-20 03:42:20,510 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:82990164-103010164
2011-05-20 03:42:25,522 - INFO - Processed 44000000 reads so far
2011-05-20 03:42:35,422 - INFO - Processed 44100000 reads so far
2011-05-20 03:42:43,503 - INFO - Processed 44200000 reads so far
2011-05-20 03:42:53,097 - INFO - Processed 44300000 reads so far
2011-05-20 03:43:01,284 - INFO - Processed 44400000 reads so far
2011-05-20 03:43:11,990 - INFO - Processed 44500000 reads so far
2011-05-20 03:43:22,190 - INFO - Processed 44600000 reads so far
2011-05-20 03:43:31,087 - INFO - Processed 44700000 reads so far
2011-05-20 03:43:39,257 - INFO - Processed 44800000 reads so far
2011-05-20 03:43:41,052 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16_random:0-20010063
2011-05-20 03:43:41,070 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:2990000-23010000
2011-05-20 03:43:47,544 - INFO - Processed 44900000 reads so far
2011-05-20 03:43:55,878 - INFO - Processed 45000000 reads so far
2011-05-20 03:44:05,131 - INFO - Processed 45100000 reads so far
2011-05-20 03:44:14,770 - INFO - Processed 45200000 reads so far
2011-05-20 03:44:23,476 - INFO - Processed 45300000 reads so far
2011-05-20 03:44:33,908 - INFO - Processed 45400000 reads so far
2011-05-20 03:44:44,153 - INFO - Processed 45500000 reads so far
2011-05-20 03:44:52,357 - INFO - Processed 45600000 reads so far
2011-05-20 03:45:01,975 - INFO - Processed 45700000 reads so far
2011-05-20 03:45:13,502 - INFO - Processed 45800000 reads so far
2011-05-20 03:45:23,621 - INFO - Processed 45900000 reads so far
2011-05-20 03:45:33,086 - INFO - Processed 46000000 reads so far
2011-05-20 03:45:33,638 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:22990029-43010029
2011-05-20 03:45:42,371 - INFO - Processed 46100000 reads so far
2011-05-20 03:45:54,755 - INFO - Processed 46200000 reads so far
2011-05-20 03:46:05,116 - INFO - Processed 46300000 reads so far
2011-05-20 03:46:15,063 - INFO - Processed 46400000 reads so far
2011-05-20 03:46:25,035 - INFO - Processed 46500000 reads so far
2011-05-20 03:46:36,728 - INFO - Processed 46600000 reads so far
2011-05-20 03:46:48,420 - INFO - Processed 46700000 reads so far
2011-05-20 03:46:58,268 - INFO - Processed 46800000 reads so far
2011-05-20 03:47:08,368 - INFO - Processed 46900000 reads so far
2011-05-20 03:47:17,676 - INFO - Processed 47000000 reads so far
2011-05-20 03:47:27,370 - INFO - Processed 47100000 reads so far
2011-05-20 03:47:38,852 - INFO - Processed 47200000 reads so far
2011-05-20 03:47:42,710 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:42990059-63010059
2011-05-20 03:47:48,272 - INFO - Processed 47300000 reads so far
2011-05-20 03:47:58,412 - INFO - Processed 47400000 reads so far
2011-05-20 03:48:08,332 - INFO - Processed 47500000 reads so far
2011-05-20 03:48:19,825 - INFO - Processed 47600000 reads so far
2011-05-20 03:48:29,731 - INFO - Processed 47700000 reads so far
2011-05-20 03:48:37,903 - INFO - Processed 47800000 reads so far
2011-05-20 03:48:47,174 - INFO - Processed 47900000 reads so far
2011-05-20 03:48:56,746 - INFO - Processed 48000000 reads so far
2011-05-20 03:49:05,727 - INFO - Processed 48100000 reads so far
2011-05-20 03:49:15,548 - INFO - Processed 48200000 reads so far
2011-05-20 03:49:26,037 - INFO - Processed 48300000 reads so far
2011-05-20 03:49:29,811 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:62990080-83010080
2011-05-20 03:49:35,257 - INFO - Processed 48400000 reads so far
2011-05-20 03:49:44,112 - INFO - Processed 48500000 reads so far
2011-05-20 03:49:53,861 - INFO - Processed 48600000 reads so far
2011-05-20 03:50:04,020 - INFO - Processed 48700000 reads so far
2011-05-20 03:50:12,979 - INFO - Processed 48800000 reads so far
2011-05-20 03:50:21,695 - INFO - Processed 48900000 reads so far
2011-05-20 03:50:33,769 - INFO - Processed 49000000 reads so far
2011-05-20 03:50:44,559 - INFO - Processed 49100000 reads so far
2011-05-20 03:50:55,110 - INFO - Processed 49200000 reads so far
2011-05-20 03:51:03,694 - INFO - Processed 49300000 reads so far
2011-05-20 03:51:12,684 - INFO - Processed 49400000 reads so far
2011-05-20 03:51:18,710 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:82990148-103010148
2011-05-20 03:51:23,369 - INFO - Processed 49500000 reads so far
2011-05-20 03:51:33,143 - INFO - Processed 49600000 reads so far
2011-05-20 03:51:43,898 - INFO - Processed 49700000 reads so far
2011-05-20 03:51:53,108 - INFO - Processed 49800000 reads so far
2011-05-20 03:52:00,939 - INFO - Processed 49900000 reads so far
2011-05-20 03:52:10,329 - INFO - Processed 50000000 reads so far
2011-05-20 03:52:18,214 - INFO - Processed 50100000 reads so far
2011-05-20 03:52:20,517 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17_random:0-20010028
2011-05-20 03:52:21,843 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:2990000-23010000
2011-05-20 03:52:26,805 - INFO - Processed 50200000 reads so far
2011-05-20 03:52:36,203 - INFO - Processed 50300000 reads so far
2011-05-20 03:52:44,227 - INFO - Processed 50400000 reads so far
2011-05-20 03:52:54,699 - INFO - Processed 50500000 reads so far
2011-05-20 03:53:03,427 - INFO - Processed 50600000 reads so far
2011-05-20 03:53:13,653 - INFO - Processed 50700000 reads so far
2011-05-20 03:53:21,709 - INFO - Processed 50800000 reads so far
2011-05-20 03:53:29,959 - INFO - Processed 50900000 reads so far
2011-05-20 03:53:39,652 - INFO - Processed 51000000 reads so far
2011-05-20 03:53:49,204 - INFO - Processed 51100000 reads so far
2011-05-20 03:53:57,140 - INFO - Processed 51200000 reads so far
2011-05-20 03:54:04,945 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:22990011-43010011
2011-05-20 03:54:05,951 - INFO - Processed 51300000 reads so far
2011-05-20 03:54:14,090 - INFO - Processed 51400000 reads so far
2011-05-20 03:54:22,635 - INFO - Processed 51500000 reads so far
2011-05-20 03:54:31,419 - INFO - Processed 51600000 reads so far
2011-05-20 03:54:41,221 - INFO - Processed 51700000 reads so far
2011-05-20 03:54:50,744 - INFO - Processed 51800000 reads so far
2011-05-20 03:54:59,103 - INFO - Processed 51900000 reads so far
2011-05-20 03:55:09,441 - INFO - Processed 52000000 reads so far
2011-05-20 03:55:17,979 - INFO - Processed 52100000 reads so far
2011-05-20 03:55:27,805 - INFO - Processed 52200000 reads so far
2011-05-20 03:55:36,276 - INFO - Processed 52300000 reads so far
2011-05-20 03:55:44,741 - INFO - Processed 52400000 reads so far
2011-05-20 03:55:45,641 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:42990041-63010041
2011-05-20 03:55:53,198 - INFO - Processed 52500000 reads so far
2011-05-20 03:56:04,108 - INFO - Processed 52600000 reads so far
2011-05-20 03:56:12,401 - INFO - Processed 52700000 reads so far
2011-05-20 03:56:21,194 - INFO - Processed 52800000 reads so far
2011-05-20 03:56:29,977 - INFO - Processed 52900000 reads so far
2011-05-20 03:56:39,151 - INFO - Processed 53000000 reads so far
2011-05-20 03:56:47,114 - INFO - Processed 53100000 reads so far
2011-05-20 03:56:56,772 - INFO - Processed 53200000 reads so far
2011-05-20 03:57:04,858 - INFO - Processed 53300000 reads so far
2011-05-20 03:57:14,751 - INFO - Processed 53400000 reads so far
2011-05-20 03:57:24,279 - INFO - Processed 53500000 reads so far
2011-05-20 03:57:24,814 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:62990051-83010051
2011-05-20 03:57:32,565 - INFO - Processed 53600000 reads so far
2011-05-20 03:57:40,394 - INFO - Processed 53700000 reads so far
2011-05-20 03:57:48,863 - INFO - Processed 53800000 reads so far
2011-05-20 03:57:57,234 - INFO - Processed 53900000 reads so far
2011-05-20 03:58:08,131 - INFO - Processed 54000000 reads so far
2011-05-20 03:58:16,367 - INFO - Processed 54100000 reads so far
2011-05-20 03:58:24,906 - INFO - Processed 54200000 reads so far
2011-05-20 03:58:51,732 - INFO - Processed 54300000 reads so far
2011-05-20 03:59:02,413 - INFO - Processed 54400000 reads so far
2011-05-20 03:59:11,308 - INFO - Processed 54500000 reads so far
2011-05-20 03:59:21,349 - INFO - Processed 54600000 reads so far
2011-05-20 03:59:26,057 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:82990062-103010062
2011-05-20 03:59:32,257 - INFO - Processed 54700000 reads so far
2011-05-20 03:59:42,577 - INFO - Processed 54800000 reads so far
2011-05-20 03:59:52,526 - INFO - Processed 54900000 reads so far
2011-05-20 04:00:05,956 - INFO - Processed 55000000 reads so far
2011-05-20 04:00:13,071 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:2990057-23010057
2011-05-20 04:00:15,720 - INFO - Processed 55100000 reads so far
2011-05-20 04:00:27,890 - INFO - Processed 55200000 reads so far
2011-05-20 04:00:40,377 - INFO - Processed 55300000 reads so far
2011-05-20 04:00:53,293 - INFO - Processed 55400000 reads so far
2011-05-20 04:01:05,598 - INFO - Processed 55500000 reads so far
2011-05-20 04:01:17,080 - INFO - Processed 55600000 reads so far
2011-05-20 04:01:30,760 - INFO - Processed 55700000 reads so far
2011-05-20 04:01:41,758 - INFO - Processed 55800000 reads so far
2011-05-20 04:01:52,532 - INFO - Processed 55900000 reads so far
2011-05-20 04:02:02,781 - INFO - Processed 56000000 reads so far
2011-05-20 04:02:12,040 - INFO - Processed 56100000 reads so far
2011-05-20 04:02:19,639 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:22990059-43010059
2011-05-20 04:02:22,599 - INFO - Processed 56200000 reads so far
2011-05-20 04:02:32,574 - INFO - Processed 56300000 reads so far
2011-05-20 04:02:43,905 - INFO - Processed 56400000 reads so far
2011-05-20 04:02:54,593 - INFO - Processed 56500000 reads so far
2011-05-20 04:03:07,985 - INFO - Processed 56600000 reads so far
2011-05-20 04:03:18,161 - INFO - Processed 56700000 reads so far
2011-05-20 04:03:29,713 - INFO - Processed 56800000 reads so far
2011-05-20 04:03:39,765 - INFO - Processed 56900000 reads so far
2011-05-20 04:03:50,024 - INFO - Processed 57000000 reads so far
2011-05-20 04:04:00,278 - INFO - Processed 57100000 reads so far
2011-05-20 04:04:11,984 - INFO - Processed 57200000 reads so far
2011-05-20 04:04:21,013 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:42990067-63010067
2011-05-20 04:04:23,117 - INFO - Processed 57300000 reads so far
2011-05-20 04:04:33,234 - INFO - Processed 57400000 reads so far
2011-05-20 04:04:47,460 - INFO - Processed 57500000 reads so far
2011-05-20 04:04:58,816 - INFO - Processed 57600000 reads so far
2011-05-20 04:05:10,880 - INFO - Processed 57700000 reads so far
2011-05-20 04:05:19,806 - INFO - Processed 57800000 reads so far
2011-05-20 04:05:30,748 - INFO - Processed 57900000 reads so far
2011-05-20 04:05:40,213 - INFO - Processed 58000000 reads so far
2011-05-20 04:05:49,004 - INFO - Processed 58100000 reads so far
2011-05-20 04:05:57,073 - INFO - Processed 58200000 reads so far
2011-05-20 04:06:06,230 - INFO - Processed 58300000 reads so far
2011-05-20 04:06:09,603 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:2989999-23009999
2011-05-20 04:06:14,815 - INFO - Processed 58400000 reads so far
2011-05-20 04:06:23,776 - INFO - Processed 58500000 reads so far
2011-05-20 04:06:32,193 - INFO - Processed 58600000 reads so far
2011-05-20 04:06:43,322 - INFO - Processed 58700000 reads so far
2011-05-20 04:06:53,073 - INFO - Processed 58800000 reads so far
2011-05-20 04:07:01,305 - INFO - Processed 58900000 reads so far
2011-05-20 04:07:12,475 - INFO - Processed 59000000 reads so far
2011-05-20 04:07:20,676 - INFO - Processed 59100000 reads so far
2011-05-20 04:07:29,453 - INFO - Processed 59200000 reads so far
2011-05-20 04:07:38,268 - INFO - Processed 59300000 reads so far
2011-05-20 04:07:46,830 - INFO - Processed 59400000 reads so far
2011-05-20 04:07:48,367 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:22990000-43010000
2011-05-20 04:07:55,652 - INFO - Processed 59500000 reads so far
2011-05-20 04:08:03,721 - INFO - Processed 59600000 reads so far
2011-05-20 04:08:13,017 - INFO - Processed 59700000 reads so far
2011-05-20 04:08:21,897 - INFO - Processed 59800000 reads so far
2011-05-20 04:08:29,906 - INFO - Processed 59900000 reads so far
2011-05-20 04:08:38,776 - INFO - Processed 60000000 reads so far
2011-05-20 04:08:50,462 - INFO - Processed 60100000 reads so far
2011-05-20 04:09:00,005 - INFO - Processed 60200000 reads so far
2011-05-20 04:09:08,008 - INFO - Processed 60300000 reads so far
2011-05-20 04:09:16,602 - INFO - Processed 60400000 reads so far
2011-05-20 04:09:25,824 - INFO - Processed 60500000 reads so far
2011-05-20 04:09:29,421 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:42990004-63010004
2011-05-20 04:09:35,895 - INFO - Processed 60600000 reads so far
2011-05-20 04:09:45,421 - INFO - Processed 60700000 reads so far
2011-05-20 04:09:55,493 - INFO - Processed 60800000 reads so far
2011-05-20 04:10:05,888 - INFO - Processed 60900000 reads so far
2011-05-20 04:10:14,912 - INFO - Processed 61000000 reads so far
2011-05-20 04:10:24,407 - INFO - Processed 61100000 reads so far
2011-05-20 04:10:36,351 - INFO - Processed 61200000 reads so far
2011-05-20 04:10:46,148 - INFO - Processed 61300000 reads so far
2011-05-20 04:10:56,244 - INFO - Processed 61400000 reads so far
2011-05-20 04:11:07,813 - INFO - Processed 61500000 reads so far
2011-05-20 04:11:19,190 - INFO - Processed 61600000 reads so far
2011-05-20 04:11:20,040 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:62990010-83010010
2011-05-20 04:11:28,519 - INFO - Processed 61700000 reads so far
2011-05-20 04:11:38,715 - INFO - Processed 61800000 reads so far
2011-05-20 04:11:50,503 - INFO - Processed 61900000 reads so far
2011-05-20 04:12:00,304 - INFO - Processed 62000000 reads so far
2011-05-20 04:12:10,749 - INFO - Processed 62100000 reads so far
2011-05-20 04:12:23,149 - INFO - Processed 62200000 reads so far
2011-05-20 04:12:33,583 - INFO - Processed 62300000 reads so far
2011-05-20 04:12:42,210 - INFO - Processed 62400000 reads so far
2011-05-20 04:12:52,310 - INFO - Processed 62500000 reads so far
2011-05-20 04:13:03,306 - INFO - Processed 62600000 reads so far
2011-05-20 04:13:11,567 - INFO - Processed 62700000 reads so far
2011-05-20 04:13:12,168 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:82990027-103010027
2011-05-20 04:13:20,788 - INFO - Processed 62800000 reads so far
2011-05-20 04:13:30,930 - INFO - Processed 62900000 reads so far
2011-05-20 04:13:38,995 - INFO - Processed 63000000 reads so far
2011-05-20 04:13:48,382 - INFO - Processed 63100000 reads so far
2011-05-20 04:13:57,326 - INFO - Processed 63200000 reads so far
2011-05-20 04:14:07,160 - INFO - Processed 63300000 reads so far
2011-05-20 04:14:17,225 - INFO - Processed 63400000 reads so far
2011-05-20 04:14:26,145 - INFO - Processed 63500000 reads so far
2011-05-20 04:14:35,427 - INFO - Processed 63600000 reads so far
2011-05-20 04:14:44,874 - INFO - Processed 63700000 reads so far
2011-05-20 04:14:53,193 - INFO - Processed 63800000 reads so far
2011-05-20 04:15:01,789 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:102990040-123010040
2011-05-20 04:15:03,383 - INFO - Processed 63900000 reads so far
2011-05-20 04:15:13,532 - INFO - Processed 64000000 reads so far
2011-05-20 04:15:23,650 - INFO - Processed 64100000 reads so far
2011-05-20 04:15:33,013 - INFO - Processed 64200000 reads so far
2011-05-20 04:15:41,196 - INFO - Processed 64300000 reads so far
2011-05-20 04:15:52,508 - INFO - Processed 64400000 reads so far
2011-05-20 04:16:02,597 - INFO - Processed 64500000 reads so far
2011-05-20 04:16:13,454 - INFO - Processed 64600000 reads so far
2011-05-20 04:16:23,533 - INFO - Processed 64700000 reads so far
2011-05-20 04:16:36,430 - INFO - Processed 64800000 reads so far
2011-05-20 04:16:48,685 - INFO - Processed 64900000 reads so far
2011-05-20 04:16:56,587 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:122990058-143010058
2011-05-20 04:17:01,072 - INFO - Processed 65000000 reads so far
2011-05-20 04:17:14,318 - INFO - Processed 65100000 reads so far
2011-05-20 04:17:25,633 - INFO - Processed 65200000 reads so far
2011-05-20 04:17:36,264 - INFO - Processed 65300000 reads so far
2011-05-20 04:17:47,917 - INFO - Processed 65400000 reads so far
2011-05-20 04:17:57,255 - INFO - Processed 65500000 reads so far
2011-05-20 04:18:09,986 - INFO - Processed 65600000 reads so far
2011-05-20 04:18:21,242 - INFO - Processed 65700000 reads so far
2011-05-20 04:18:31,600 - INFO - Processed 65800000 reads so far
2011-05-20 04:18:42,284 - INFO - Processed 65900000 reads so far
2011-05-20 04:18:52,307 - INFO - Processed 66000000 reads so far
2011-05-20 04:19:02,411 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:142990068-163010068
2011-05-20 04:19:03,641 - INFO - Processed 66100000 reads so far
2011-05-20 04:19:14,297 - INFO - Processed 66200000 reads so far
2011-05-20 04:19:24,028 - INFO - Processed 66300000 reads so far
2011-05-20 04:19:37,128 - INFO - Processed 66400000 reads so far
2011-05-20 04:19:47,066 - INFO - Processed 66500000 reads so far
2011-05-20 04:19:57,580 - INFO - Processed 66600000 reads so far
2011-05-20 04:20:09,372 - INFO - Processed 66700000 reads so far
2011-05-20 04:20:23,398 - INFO - Processed 66800000 reads so far
2011-05-20 04:20:35,434 - INFO - Processed 66900000 reads so far
2011-05-20 04:20:44,738 - INFO - Processed 67000000 reads so far
2011-05-20 04:20:57,356 - INFO - Processed 67100000 reads so far
2011-05-20 04:21:02,953 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:162990083-183010083
2011-05-20 04:21:07,595 - INFO - Processed 67200000 reads so far
2011-05-20 04:21:18,882 - INFO - Processed 67300000 reads so far
2011-05-20 04:21:30,678 - INFO - Processed 67400000 reads so far
2011-05-20 04:21:41,248 - INFO - Processed 67500000 reads so far
2011-05-20 04:21:52,207 - INFO - Processed 67600000 reads so far
2011-05-20 04:22:00,717 - INFO - Processed 67700000 reads so far
2011-05-20 04:22:11,517 - INFO - Processed 67800000 reads so far
2011-05-20 04:22:21,668 - INFO - Processed 67900000 reads so far
2011-05-20 04:22:32,879 - INFO - Processed 68000000 reads so far
2011-05-20 04:22:44,037 - INFO - Processed 68100000 reads so far
2011-05-20 04:22:54,393 - INFO - Processed 68200000 reads so far
2011-05-20 04:23:04,711 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:182990097-203010097
2011-05-20 04:23:05,617 - INFO - Processed 68300000 reads so far
2011-05-20 04:23:14,209 - INFO - Processed 68400000 reads so far
2011-05-20 04:23:22,629 - INFO - Processed 68500000 reads so far
2011-05-20 04:23:33,323 - INFO - Processed 68600000 reads so far
2011-05-20 04:23:44,665 - INFO - Processed 68700000 reads so far
2011-05-20 04:23:55,154 - INFO - Processed 68800000 reads so far
2011-05-20 04:24:05,657 - INFO - Processed 68900000 reads so far
2011-05-20 04:24:17,864 - INFO - Processed 69000000 reads so far
2011-05-20 04:24:28,941 - INFO - Processed 69100000 reads so far
2011-05-20 04:24:30,769 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1_random:0-20010000
2011-05-20 04:24:39,285 - INFO - Processed 69200000 reads so far
2011-05-20 04:24:44,936 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:2990116-23010116
2011-05-20 04:24:48,893 - INFO - Processed 69300000 reads so far
2011-05-20 04:25:00,220 - INFO - Processed 69400000 reads so far
2011-05-20 04:25:09,155 - INFO - Processed 69500000 reads so far
2011-05-20 04:25:18,107 - INFO - Processed 69600000 reads so far
2011-05-20 04:25:29,685 - INFO - Processed 69700000 reads so far
2011-05-20 04:25:39,242 - INFO - Processed 69800000 reads so far
2011-05-20 04:25:52,304 - INFO - Processed 69900000 reads so far
2011-05-20 04:26:03,755 - INFO - Processed 70000000 reads so far
2011-05-20 04:26:13,276 - INFO - Processed 70100000 reads so far
2011-05-20 04:26:22,545 - INFO - Processed 70200000 reads so far
2011-05-20 04:26:33,487 - INFO - Processed 70300000 reads so far
2011-05-20 04:26:41,420 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:22990163-43010163
2011-05-20 04:26:43,698 - INFO - Processed 70400000 reads so far
2011-05-20 04:26:54,991 - INFO - Processed 70500000 reads so far
2011-05-20 04:27:08,334 - INFO - Processed 70600000 reads so far
2011-05-20 04:27:17,272 - INFO - Processed 70700000 reads so far
2011-05-20 04:27:27,186 - INFO - Processed 70800000 reads so far
2011-05-20 04:27:38,417 - INFO - Processed 70900000 reads so far
2011-05-20 04:27:49,443 - INFO - Processed 71000000 reads so far
2011-05-20 04:28:01,124 - INFO - Processed 71100000 reads so far
2011-05-20 04:28:12,309 - INFO - Processed 71200000 reads so far
2011-05-20 04:28:23,457 - INFO - Processed 71300000 reads so far
2011-05-20 04:28:32,947 - INFO - Processed 71400000 reads so far
2011-05-20 04:28:44,873 - INFO - Processed 71500000 reads so far
2011-05-20 04:28:51,111 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:42990308-63010308
2011-05-20 04:28:54,918 - INFO - Processed 71600000 reads so far
2011-05-20 04:29:05,967 - INFO - Processed 71700000 reads so far
2011-05-20 04:29:15,202 - INFO - Processed 71800000 reads so far
2011-05-20 04:29:24,926 - INFO - Processed 71900000 reads so far
2011-05-20 04:29:35,904 - INFO - Processed 72000000 reads so far
2011-05-20 04:29:46,377 - INFO - Processed 72100000 reads so far
2011-05-20 04:29:56,259 - INFO - Processed 72200000 reads so far
2011-05-20 04:30:06,324 - INFO - Processed 72300000 reads so far
2011-05-20 04:30:15,980 - INFO - Processed 72400000 reads so far
2011-05-20 04:30:24,902 - INFO - Processed 72500000 reads so far
2011-05-20 04:30:37,772 - INFO - Processed 72600000 reads so far
2011-05-20 04:30:46,439 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:62990328-83010328
2011-05-20 04:30:55,074 - INFO - Processed 72700000 reads so far
2011-05-20 04:31:06,152 - INFO - Processed 72800000 reads so far
2011-05-20 04:31:16,028 - INFO - Processed 72900000 reads so far
2011-05-20 04:31:25,696 - INFO - Processed 73000000 reads so far
2011-05-20 04:31:36,001 - INFO - Processed 73100000 reads so far
2011-05-20 04:31:48,314 - INFO - Processed 73200000 reads so far
2011-05-20 04:31:59,779 - INFO - Processed 73300000 reads so far
2011-05-20 04:32:12,200 - INFO - Processed 73400000 reads so far
2011-05-20 04:32:20,693 - INFO - Processed 73500000 reads so far
2011-05-20 04:32:31,523 - INFO - Processed 73600000 reads so far
2011-05-20 04:32:40,983 - INFO - Processed 73700000 reads so far
2011-05-20 04:32:50,694 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:82990331-103010331
2011-05-20 04:32:52,265 - INFO - Processed 73800000 reads so far
2011-05-20 04:33:03,663 - INFO - Processed 73900000 reads so far
2011-05-20 04:33:13,510 - INFO - Processed 74000000 reads so far
2011-05-20 04:33:26,226 - INFO - Processed 74100000 reads so far
2011-05-20 04:33:34,885 - INFO - Processed 74200000 reads so far
2011-05-20 04:33:46,222 - INFO - Processed 74300000 reads so far
2011-05-20 04:33:56,282 - INFO - Processed 74400000 reads so far
2011-05-20 04:34:07,347 - INFO - Processed 74500000 reads so far
2011-05-20 04:34:17,732 - INFO - Processed 74600000 reads so far
2011-05-20 04:34:29,725 - INFO - Processed 74700000 reads so far
2011-05-20 04:34:38,391 - INFO - Processed 74800000 reads so far
2011-05-20 04:34:45,240 - INFO - Processed 74900000 reads so far
2011-05-20 04:34:53,676 - INFO - Processed 75000000 reads so far
2011-05-20 04:35:01,905 - INFO - Processed 75100000 reads so far
2011-05-20 04:35:10,481 - INFO - Processed 75200000 reads so far
2011-05-20 04:35:18,397 - INFO - Processed 75300000 reads so far
2011-05-20 04:35:27,416 - INFO - Processed 75400000 reads so far
2011-05-20 04:35:35,677 - INFO - Processed 75500000 reads so far
2011-05-20 04:35:44,519 - INFO - Processed 75600000 reads so far
2011-05-20 04:35:54,428 - INFO - Processed 75700000 reads so far
2011-05-20 04:36:03,240 - INFO - Processed 75800000 reads so far
2011-05-20 04:36:09,558 - INFO - Processed 75900000 reads so far
2011-05-20 04:36:17,755 - INFO - Processed 76000000 reads so far
2011-05-20 04:36:25,567 - INFO - Processed 76100000 reads so far
2011-05-20 04:36:33,077 - INFO - Processed 76200000 reads so far
2011-05-20 04:36:41,588 - INFO - Processed 76300000 reads so far
2011-05-20 04:36:48,937 - INFO - Processed 76400000 reads so far
2011-05-20 04:37:02,327 - INFO - Processed 76500000 reads so far
2011-05-20 04:37:15,213 - INFO - Processed 76600000 reads so far
2011-05-20 04:37:25,008 - INFO - Processed 76700000 reads so far
2011-05-20 04:37:32,800 - INFO - Processed 76800000 reads so far
2011-05-20 04:37:40,983 - INFO - Processed 76900000 reads so far
2011-05-20 04:37:50,276 - INFO - Processed 77000000 reads so far
2011-05-20 04:37:57,147 - INFO - Processed 77100000 reads so far
2011-05-20 04:38:04,117 - INFO - Processed 77200000 reads so far
2011-05-20 04:38:12,045 - INFO - Processed 77300000 reads so far
2011-05-20 04:38:21,272 - INFO - Processed 77400000 reads so far
2011-05-20 04:38:31,616 - INFO - Processed 77500000 reads so far
2011-05-20 04:38:40,758 - INFO - Processed 77600000 reads so far
2011-05-20 04:38:49,340 - INFO - Processed 77700000 reads so far
2011-05-20 04:38:56,263 - INFO - Processed 77800000 reads so far
2011-05-20 04:39:04,395 - INFO - Processed 77900000 reads so far
2011-05-20 04:39:11,483 - INFO - Processed 78000000 reads so far
2011-05-20 04:39:20,919 - INFO - Processed 78100000 reads so far
2011-05-20 04:39:28,475 - INFO - Processed 78200000 reads so far
2011-05-20 04:39:36,876 - INFO - Processed 78300000 reads so far
2011-05-20 04:39:45,095 - INFO - Processed 78400000 reads so far
2011-05-20 04:39:52,789 - INFO - Processed 78500000 reads so far
2011-05-20 04:40:01,637 - INFO - Processed 78600000 reads so far
2011-05-20 04:40:10,961 - INFO - Processed 78700000 reads so far
2011-05-20 04:40:19,101 - INFO - Processed 78800000 reads so far
2011-05-20 04:40:27,667 - INFO - Processed 78900000 reads so far
2011-05-20 04:40:36,786 - INFO - Processed 79000000 reads so far
2011-05-20 04:40:45,043 - INFO - Processed 79100000 reads so far
2011-05-20 04:40:53,594 - INFO - Processed 79200000 reads so far
2011-05-20 04:41:02,082 - INFO - Processed 79300000 reads so far
2011-05-20 04:41:09,702 - INFO - Processed 79400000 reads so far
2011-05-20 04:41:18,127 - INFO - Processed 79500000 reads so far
2011-05-20 04:41:26,385 - INFO - Processed 79600000 reads so far
2011-05-20 04:41:34,713 - INFO - Processed 79700000 reads so far
2011-05-20 04:41:42,619 - INFO - Processed 79800000 reads so far
2011-05-20 04:41:51,505 - INFO - Processed 79900000 reads so far
2011-05-20 04:41:59,795 - INFO - Processed 80000000 reads so far
2011-05-20 04:42:08,900 - INFO - Processed 80100000 reads so far
2011-05-20 04:42:18,220 - INFO - Processed 80200000 reads so far
2011-05-20 04:42:26,922 - INFO - Processed 80300000 reads so far
2011-05-20 04:42:35,545 - INFO - Processed 80400000 reads so far
2011-05-20 04:42:44,656 - INFO - Processed 80500000 reads so far
2011-05-20 04:42:53,462 - INFO - Processed 80600000 reads so far
2011-05-20 04:43:02,526 - INFO - Processed 80700000 reads so far
2011-05-20 04:43:10,939 - INFO - Processed 80800000 reads so far
2011-05-20 04:43:19,965 - INFO - Processed 80900000 reads so far
2011-05-20 04:43:29,326 - INFO - Processed 81000000 reads so far
2011-05-20 04:43:36,540 - INFO - Processed 81100000 reads so far
2011-05-20 04:43:45,470 - INFO - Processed 81200000 reads so far
2011-05-20 04:43:53,948 - INFO - Processed 81300000 reads so far
2011-05-20 04:44:01,920 - INFO - Processed 81400000 reads so far
2011-05-20 04:44:13,052 - INFO - Processed 81500000 reads so far
2011-05-20 04:44:21,337 - INFO - Processed 81600000 reads so far
2011-05-20 04:44:29,639 - INFO - Processed 81700000 reads so far
2011-05-20 04:44:39,203 - INFO - Processed 81800000 reads so far
2011-05-20 04:44:46,917 - INFO - Processed 81900000 reads so far
2011-05-20 04:44:55,221 - INFO - Processed 82000000 reads so far
2011-05-20 04:45:03,228 - INFO - Processed 82100000 reads so far
2011-05-20 04:45:10,695 - INFO - Processed 82200000 reads so far
2011-05-20 04:45:19,271 - INFO - Processed 82300000 reads so far
2011-05-20 04:45:26,682 - INFO - Processed 82400000 reads so far
2011-05-20 04:45:34,173 - INFO - Processed 82500000 reads so far
2011-05-20 04:45:43,534 - INFO - Processed 82600000 reads so far
2011-05-20 04:45:53,774 - INFO - Processed 82700000 reads so far
2011-05-20 04:46:02,080 - INFO - Processed 82800000 reads so far
2011-05-20 04:46:09,692 - INFO - Processed 82900000 reads so far
2011-05-20 04:46:18,012 - INFO - Processed 83000000 reads so far
2011-05-20 04:46:28,913 - INFO - Processed 83100000 reads so far
2011-05-20 04:46:40,251 - INFO - Processed 83200000 reads so far
2011-05-20 04:46:48,411 - INFO - Processed 83300000 reads so far
2011-05-20 04:46:56,449 - INFO - Processed 83400000 reads so far
2011-05-20 04:47:06,060 - INFO - Processed 83500000 reads so far
2011-05-20 04:47:14,704 - INFO - Processed 83600000 reads so far
2011-05-20 04:47:22,816 - INFO - Processed 83700000 reads so far
2011-05-20 04:47:32,595 - INFO - Processed 83800000 reads so far
2011-05-20 04:47:42,801 - INFO - Processed 83900000 reads so far
2011-05-20 04:47:52,126 - INFO - Processed 84000000 reads so far
2011-05-20 04:47:59,609 - INFO - Processed 84100000 reads so far
2011-05-20 04:48:09,364 - INFO - Processed 84200000 reads so far
2011-05-20 04:48:16,756 - INFO - Processed 84300000 reads so far
2011-05-20 04:48:25,023 - INFO - Processed 84400000 reads so far
2011-05-20 04:48:33,779 - INFO - Processed 84500000 reads so far
2011-05-20 04:48:43,011 - INFO - Processed 84600000 reads so far
2011-05-20 04:48:50,599 - INFO - Processed 84700000 reads so far
2011-05-20 04:49:00,778 - INFO - Processed 84800000 reads so far
2011-05-20 04:49:11,016 - INFO - Processed 84900000 reads so far
2011-05-20 04:49:14,648 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:102990344-123010344
2011-05-20 04:49:21,360 - INFO - Processed 85000000 reads so far
2011-05-20 04:49:30,149 - INFO - Processed 85100000 reads so far
2011-05-20 04:49:39,293 - INFO - Processed 85200000 reads so far
2011-05-20 04:49:48,969 - INFO - Processed 85300000 reads so far
2011-05-20 04:49:59,012 - INFO - Processed 85400000 reads so far
2011-05-20 04:50:11,200 - INFO - Processed 85500000 reads so far
2011-05-20 04:50:21,307 - INFO - Processed 85600000 reads so far
2011-05-20 04:50:30,641 - INFO - Processed 85700000 reads so far
2011-05-20 04:50:41,748 - INFO - Processed 85800000 reads so far
2011-05-20 04:50:50,397 - INFO - Processed 85900000 reads so far
2011-05-20 04:51:00,842 - INFO - Processed 86000000 reads so far
2011-05-20 04:51:04,861 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:122990347-143010347
2011-05-20 04:51:12,159 - INFO - Processed 86100000 reads so far
2011-05-20 04:51:23,732 - INFO - Processed 86200000 reads so far
2011-05-20 04:51:34,032 - INFO - Processed 86300000 reads so far
2011-05-20 04:51:43,961 - INFO - Processed 86400000 reads so far
2011-05-20 04:51:53,537 - INFO - Processed 86500000 reads so far
2011-05-20 04:52:03,343 - INFO - Processed 86600000 reads so far
2011-05-20 04:52:13,813 - INFO - Processed 86700000 reads so far
2011-05-20 04:52:23,757 - INFO - Processed 86800000 reads so far
2011-05-20 04:52:34,546 - INFO - Processed 86900000 reads so far
2011-05-20 04:52:44,335 - INFO - Processed 87000000 reads so far
2011-05-20 04:52:56,325 - INFO - Processed 87100000 reads so far
2011-05-20 04:53:02,661 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:142990398-163010398
2011-05-20 04:53:06,838 - INFO - Processed 87200000 reads so far
2011-05-20 04:53:16,829 - INFO - Processed 87300000 reads so far
2011-05-20 04:53:27,926 - INFO - Processed 87400000 reads so far
2011-05-20 04:53:37,946 - INFO - Processed 87500000 reads so far
2011-05-20 04:53:48,435 - INFO - Processed 87600000 reads so far
2011-05-20 04:53:58,241 - INFO - Processed 87700000 reads so far
2011-05-20 04:54:09,215 - INFO - Processed 87800000 reads so far
2011-05-20 04:54:19,328 - INFO - Processed 87900000 reads so far
2011-05-20 04:54:30,040 - INFO - Processed 88000000 reads so far
2011-05-20 04:54:40,541 - INFO - Processed 88100000 reads so far
2011-05-20 04:54:50,058 - INFO - Processed 88200000 reads so far
2011-05-20 04:54:59,366 - INFO - Processed 88300000 reads so far
2011-05-20 04:55:02,139 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:162990435-183010435
2011-05-20 04:55:09,359 - INFO - Processed 88400000 reads so far
2011-05-20 04:55:20,314 - INFO - Processed 88500000 reads so far
2011-05-20 04:55:29,323 - INFO - Processed 88600000 reads so far
2011-05-20 04:55:40,055 - INFO - Processed 88700000 reads so far
2011-05-20 04:55:50,048 - INFO - Processed 88800000 reads so far
2011-05-20 04:56:01,067 - INFO - Processed 88900000 reads so far
2011-05-20 04:56:10,961 - INFO - Processed 89000000 reads so far
2011-05-20 04:56:20,810 - INFO - Processed 89100000 reads so far
2011-05-20 04:56:30,620 - INFO - Processed 89200000 reads so far
2011-05-20 04:56:41,038 - INFO - Processed 89300000 reads so far
2011-05-20 04:56:51,395 - INFO - Processed 89400000 reads so far
2011-05-20 04:57:02,168 - INFO - Processed 89500000 reads so far
2011-05-20 04:57:12,289 - INFO - Processed 89600000 reads so far
2011-05-20 04:57:12,411 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:2989993-23009993
2011-05-20 04:57:21,815 - INFO - Processed 89700000 reads so far
2011-05-20 04:57:32,711 - INFO - Processed 89800000 reads so far
2011-05-20 04:57:43,176 - INFO - Processed 89900000 reads so far
2011-05-20 04:57:54,711 - INFO - Processed 90000000 reads so far
2011-05-20 04:58:05,916 - INFO - Processed 90100000 reads so far
2011-05-20 04:58:19,160 - INFO - Processed 90200000 reads so far
2011-05-20 04:58:31,691 - INFO - Processed 90300000 reads so far
2011-05-20 04:58:42,032 - INFO - Processed 90400000 reads so far
2011-05-20 04:58:51,994 - INFO - Processed 90500000 reads so far
2011-05-20 04:59:03,019 - INFO - Processed 90600000 reads so far
2011-05-20 04:59:10,073 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:22989997-43009997
2011-05-20 04:59:13,794 - INFO - Processed 90700000 reads so far
2011-05-20 04:59:24,109 - INFO - Processed 90800000 reads so far
2011-05-20 04:59:35,827 - INFO - Processed 90900000 reads so far
2011-05-20 04:59:45,972 - INFO - Processed 91000000 reads so far
2011-05-20 04:59:56,792 - INFO - Processed 91100000 reads so far
2011-05-20 05:00:06,493 - INFO - Processed 91200000 reads so far
2011-05-20 05:00:16,711 - INFO - Processed 91300000 reads so far
2011-05-20 05:00:27,496 - INFO - Processed 91400000 reads so far
2011-05-20 05:00:38,147 - INFO - Processed 91500000 reads so far
2011-05-20 05:00:47,692 - INFO - Processed 91600000 reads so far
2011-05-20 05:00:58,341 - INFO - Processed 91700000 reads so far
2011-05-20 05:01:05,832 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:42990002-63010002
2011-05-20 05:01:09,730 - INFO - Processed 91800000 reads so far
2011-05-20 05:01:19,477 - INFO - Processed 91900000 reads so far
2011-05-20 05:01:33,332 - INFO - Processed 92000000 reads so far
2011-05-20 05:01:44,061 - INFO - Processed 92100000 reads so far
2011-05-20 05:01:54,151 - INFO - Processed 92200000 reads so far
2011-05-20 05:02:06,206 - INFO - Processed 92300000 reads so far
2011-05-20 05:02:16,700 - INFO - Processed 92400000 reads so far
2011-05-20 05:02:28,594 - INFO - Processed 92500000 reads so far
2011-05-20 05:02:40,623 - INFO - Processed 92600000 reads so far
2011-05-20 05:02:49,534 - INFO - Processed 92700000 reads so far
2011-05-20 05:02:59,556 - INFO - Processed 92800000 reads so far
2011-05-20 05:03:00,829 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:62990007-83010007
2011-05-20 05:03:11,256 - INFO - Processed 92900000 reads so far
2011-05-20 05:03:21,173 - INFO - Processed 93000000 reads so far
2011-05-20 05:03:30,157 - INFO - Processed 93100000 reads so far
2011-05-20 05:03:41,527 - INFO - Processed 93200000 reads so far
2011-05-20 05:03:50,823 - INFO - Processed 93300000 reads so far
2011-05-20 05:04:00,699 - INFO - Processed 93400000 reads so far
2011-05-20 05:04:10,663 - INFO - Processed 93500000 reads so far
2011-05-20 05:04:20,217 - INFO - Processed 93600000 reads so far
2011-05-20 05:04:30,324 - INFO - Processed 93700000 reads so far
2011-05-20 05:04:42,564 - INFO - Processed 93800000 reads so far
2011-05-20 05:04:50,703 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:82990010-103010010
2011-05-20 05:04:53,867 - INFO - Processed 93900000 reads so far
2011-05-20 05:05:03,954 - INFO - Processed 94000000 reads so far
2011-05-20 05:05:14,147 - INFO - Processed 94100000 reads so far
2011-05-20 05:05:23,842 - INFO - Processed 94200000 reads so far
2011-05-20 05:05:34,806 - INFO - Processed 94300000 reads so far
2011-05-20 05:05:45,097 - INFO - Processed 94400000 reads so far
2011-05-20 05:05:53,046 - INFO - Processed 94500000 reads so far
2011-05-20 05:06:02,413 - INFO - Processed 94600000 reads so far
2011-05-20 05:06:12,138 - INFO - Processed 94700000 reads so far
2011-05-20 05:06:21,458 - INFO - Processed 94800000 reads so far
2011-05-20 05:06:31,701 - INFO - Processed 94900000 reads so far
2011-05-20 05:06:42,588 - INFO - Processed 95000000 reads so far
2011-05-20 05:06:45,696 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:102990030-123010030
2011-05-20 05:06:51,601 - INFO - Processed 95100000 reads so far
2011-05-20 05:07:00,859 - INFO - Processed 95200000 reads so far
2011-05-20 05:07:11,314 - INFO - Processed 95300000 reads so far
2011-05-20 05:07:21,187 - INFO - Processed 95400000 reads so far
2011-05-20 05:07:31,244 - INFO - Processed 95500000 reads so far
2011-05-20 05:07:39,548 - INFO - Processed 95600000 reads so far
2011-05-20 05:07:49,184 - INFO - Processed 95700000 reads so far
2011-05-20 05:07:59,589 - INFO - Processed 95800000 reads so far
2011-05-20 05:08:09,790 - INFO - Processed 95900000 reads so far
2011-05-20 05:08:19,715 - INFO - Processed 96000000 reads so far
2011-05-20 05:08:28,978 - INFO - Processed 96100000 reads so far
2011-05-20 05:08:32,583 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:122990057-143010057
2011-05-20 05:08:37,554 - INFO - Processed 96200000 reads so far
2011-05-20 05:08:50,236 - INFO - Processed 96300000 reads so far
2011-05-20 05:09:01,925 - INFO - Processed 96400000 reads so far
2011-05-20 05:09:13,036 - INFO - Processed 96500000 reads so far
2011-05-20 05:09:24,076 - INFO - Processed 96600000 reads so far
2011-05-20 05:09:36,060 - INFO - Processed 96700000 reads so far
2011-05-20 05:09:46,035 - INFO - Processed 96800000 reads so far
2011-05-20 05:09:58,082 - INFO - Processed 96900000 reads so far
2011-05-20 05:10:12,670 - INFO - Processed 97000000 reads so far
2011-05-20 05:10:24,162 - INFO - Processed 97100000 reads so far
2011-05-20 05:10:36,867 - INFO - Processed 97200000 reads so far
2011-05-20 05:10:39,963 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:142990073-163010073
2011-05-20 05:10:54,409 - INFO - Processed 97300000 reads so far
2011-05-20 05:11:07,709 - INFO - Processed 97400000 reads so far
2011-05-20 05:11:20,056 - INFO - Processed 97500000 reads so far
2011-05-20 05:11:33,246 - INFO - Processed 97600000 reads so far
2011-05-20 05:11:42,694 - INFO - Processed 97700000 reads so far
2011-05-20 05:11:50,804 - INFO - Processed 97800000 reads so far
2011-05-20 05:12:03,095 - INFO - Processed 97900000 reads so far
2011-05-20 05:12:13,957 - INFO - Processed 98000000 reads so far
2011-05-20 05:12:24,023 - INFO - Processed 98100000 reads so far
2011-05-20 05:12:29,561 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3_random:0-20010049
2011-05-20 05:12:29,656 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:2990000-23010000
2011-05-20 05:12:32,131 - INFO - Processed 98200000 reads so far
2011-05-20 05:12:42,842 - INFO - Processed 98300000 reads so far
2011-05-20 05:12:50,963 - INFO - Processed 98400000 reads so far
2011-05-20 05:13:00,402 - INFO - Processed 98500000 reads so far
2011-05-20 05:13:10,481 - INFO - Processed 98600000 reads so far
2011-05-20 05:13:21,010 - INFO - Processed 98700000 reads so far
2011-05-20 05:13:31,842 - INFO - Processed 98800000 reads so far
2011-05-20 05:13:43,020 - INFO - Processed 98900000 reads so far
2011-05-20 05:13:53,158 - INFO - Processed 99000000 reads so far
2011-05-20 05:14:03,677 - INFO - Processed 99100000 reads so far
2011-05-20 05:14:14,349 - INFO - Processed 99200000 reads so far
2011-05-20 05:14:22,484 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:22990001-43010001
2011-05-20 05:14:24,150 - INFO - Processed 99300000 reads so far
2011-05-20 05:14:34,552 - INFO - Processed 99400000 reads so far
2011-05-20 05:14:45,106 - INFO - Processed 99500000 reads so far
2011-05-20 05:14:55,845 - INFO - Processed 99600000 reads so far
2011-05-20 05:15:04,185 - INFO - Processed 99700000 reads so far
2011-05-20 05:15:15,328 - INFO - Processed 99800000 reads so far
2011-05-20 05:15:25,362 - INFO - Processed 99900000 reads so far
2011-05-20 05:15:36,480 - INFO - Processed 100000000 reads so far
2011-05-20 05:15:46,710 - INFO - Processed 100100000 reads so far
2011-05-20 05:15:57,358 - INFO - Processed 100200000 reads so far
2011-05-20 05:16:07,536 - INFO - Processed 100300000 reads so far
2011-05-20 05:16:08,491 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:42990003-63010003
2011-05-20 05:16:20,534 - INFO - Processed 100400000 reads so far
2011-05-20 05:16:31,791 - INFO - Processed 100500000 reads so far
2011-05-20 05:16:44,660 - INFO - Processed 100600000 reads so far
2011-05-20 05:16:55,836 - INFO - Processed 100700000 reads so far
2011-05-20 05:17:07,651 - INFO - Processed 100800000 reads so far
2011-05-20 05:17:16,909 - INFO - Processed 100900000 reads so far
2011-05-20 05:17:26,962 - INFO - Processed 101000000 reads so far
2011-05-20 05:17:37,809 - INFO - Processed 101100000 reads so far
2011-05-20 05:17:47,620 - INFO - Processed 101200000 reads so far
2011-05-20 05:17:57,636 - INFO - Processed 101300000 reads so far
2011-05-20 05:18:09,502 - INFO - Processed 101400000 reads so far
2011-05-20 05:18:16,868 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:62990020-83010020
2011-05-20 05:18:21,330 - INFO - Processed 101500000 reads so far
2011-05-20 05:18:30,826 - INFO - Processed 101600000 reads so far
2011-05-20 05:18:41,194 - INFO - Processed 101700000 reads so far
2011-05-20 05:18:50,564 - INFO - Processed 101800000 reads so far
2011-05-20 05:19:01,082 - INFO - Processed 101900000 reads so far
2011-05-20 05:19:09,957 - INFO - Processed 102000000 reads so far
2011-05-20 05:19:21,258 - INFO - Processed 102100000 reads so far
2011-05-20 05:19:29,693 - INFO - Processed 102200000 reads so far
2011-05-20 05:19:39,019 - INFO - Processed 102300000 reads so far
2011-05-20 05:19:48,935 - INFO - Processed 102400000 reads so far
2011-05-20 05:19:57,699 - INFO - Processed 102500000 reads so far
2011-05-20 05:20:02,190 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:82990028-103010028
2011-05-20 05:20:08,702 - INFO - Processed 102600000 reads so far
2011-05-20 05:20:20,078 - INFO - Processed 102700000 reads so far
2011-05-20 05:20:30,510 - INFO - Processed 102800000 reads so far
2011-05-20 05:20:39,828 - INFO - Processed 102900000 reads so far
2011-05-20 05:20:49,763 - INFO - Processed 103000000 reads so far
2011-05-20 05:21:00,278 - INFO - Processed 103100000 reads so far
2011-05-20 05:21:10,579 - INFO - Processed 103200000 reads so far
2011-05-20 05:21:21,656 - INFO - Processed 103300000 reads so far
2011-05-20 05:21:31,246 - INFO - Processed 103400000 reads so far
2011-05-20 05:21:42,081 - INFO - Processed 103500000 reads so far
2011-05-20 05:21:53,296 - INFO - Processed 103600000 reads so far
2011-05-20 05:21:58,894 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:102990038-123010038
2011-05-20 05:22:03,668 - INFO - Processed 103700000 reads so far
2011-05-20 05:22:11,943 - INFO - Processed 103800000 reads so far
2011-05-20 05:22:19,889 - INFO - Processed 103900000 reads so far
2011-05-20 05:22:29,750 - INFO - Processed 104000000 reads so far
2011-05-20 05:22:41,413 - INFO - Processed 104100000 reads so far
2011-05-20 05:22:51,090 - INFO - Processed 104200000 reads so far
2011-05-20 05:23:00,901 - INFO - Processed 104300000 reads so far
2011-05-20 05:23:11,814 - INFO - Processed 104400000 reads so far
2011-05-20 05:23:22,968 - INFO - Processed 104500000 reads so far
2011-05-20 05:23:32,674 - INFO - Processed 104600000 reads so far
2011-05-20 05:23:42,900 - INFO - Processed 104700000 reads so far
2011-05-20 05:23:45,116 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:122990044-143010044
2011-05-20 05:23:53,942 - INFO - Processed 104800000 reads so far
2011-05-20 05:24:06,398 - INFO - Processed 104900000 reads so far
2011-05-20 05:24:15,689 - INFO - Processed 105000000 reads so far
2011-05-20 05:24:28,139 - INFO - Processed 105100000 reads so far
2011-05-20 05:24:37,318 - INFO - Processed 105200000 reads so far
2011-05-20 05:24:47,958 - INFO - Processed 105300000 reads so far
2011-05-20 05:24:57,717 - INFO - Processed 105400000 reads so far
2011-05-20 05:25:07,287 - INFO - Processed 105500000 reads so far
2011-05-20 05:25:18,006 - INFO - Processed 105600000 reads so far
2011-05-20 05:25:26,462 - INFO - Processed 105700000 reads so far
2011-05-20 05:25:35,758 - INFO - Processed 105800000 reads so far
2011-05-20 05:25:46,991 - INFO - Processed 105900000 reads so far
2011-05-20 05:25:48,334 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:142990064-163010064
2011-05-20 05:25:56,756 - INFO - Processed 106000000 reads so far
2011-05-20 05:26:06,587 - INFO - Processed 106100000 reads so far
2011-05-20 05:26:15,379 - INFO - Processed 106200000 reads so far
2011-05-20 05:26:25,333 - INFO - Processed 106300000 reads so far
2011-05-20 05:26:35,514 - INFO - Processed 106400000 reads so far
2011-05-20 05:26:45,477 - INFO - Processed 106500000 reads so far
2011-05-20 05:26:55,512 - INFO - Processed 106600000 reads so far
2011-05-20 05:27:05,973 - INFO - Processed 106700000 reads so far
2011-05-20 05:27:17,070 - INFO - Processed 106800000 reads so far
2011-05-20 05:27:20,852 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4_random:0-20010021
2011-05-20 05:27:21,916 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:2990008-23010008
2011-05-20 05:27:27,461 - INFO - Processed 106900000 reads so far
2011-05-20 05:27:37,400 - INFO - Processed 107000000 reads so far
2011-05-20 05:27:48,997 - INFO - Processed 107100000 reads so far
2011-05-20 05:27:58,037 - INFO - Processed 107200000 reads so far
2011-05-20 05:28:08,646 - INFO - Processed 107300000 reads so far
2011-05-20 05:28:17,149 - INFO - Processed 107400000 reads so far
2011-05-20 05:28:27,624 - INFO - Processed 107500000 reads so far
2011-05-20 05:28:37,074 - INFO - Processed 107600000 reads so far
2011-05-20 05:28:46,239 - INFO - Processed 107700000 reads so far
2011-05-20 05:28:55,621 - INFO - Processed 107800000 reads so far
2011-05-20 05:29:05,868 - INFO - Processed 107900000 reads so far
2011-05-20 05:29:12,860 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:22990017-43010017
2011-05-20 05:29:18,601 - INFO - Processed 108000000 reads so far
2011-05-20 05:29:29,333 - INFO - Processed 108100000 reads so far
2011-05-20 05:29:37,860 - INFO - Processed 108200000 reads so far
2011-05-20 05:29:49,096 - INFO - Processed 108300000 reads so far
2011-05-20 05:29:59,639 - INFO - Processed 108400000 reads so far
2011-05-20 05:30:09,046 - INFO - Processed 108500000 reads so far
2011-05-20 05:30:21,998 - INFO - Processed 108600000 reads so far
2011-05-20 05:30:32,829 - INFO - Processed 108700000 reads so far
2011-05-20 05:30:43,215 - INFO - Processed 108800000 reads so far
2011-05-20 05:30:51,981 - INFO - Processed 108900000 reads so far
2011-05-20 05:31:01,732 - INFO - Processed 109000000 reads so far
2011-05-20 05:31:12,240 - INFO - Processed 109100000 reads so far
2011-05-20 05:31:14,236 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:42990039-63010039
2011-05-20 05:31:22,410 - INFO - Processed 109200000 reads so far
2011-05-20 05:31:31,962 - INFO - Processed 109300000 reads so far
2011-05-20 05:31:42,167 - INFO - Processed 109400000 reads so far
2011-05-20 05:31:54,524 - INFO - Processed 109500000 reads so far
2011-05-20 05:32:06,661 - INFO - Processed 109600000 reads so far
2011-05-20 05:32:19,070 - INFO - Processed 109700000 reads so far
2011-05-20 05:32:28,911 - INFO - Processed 109800000 reads so far
2011-05-20 05:32:39,213 - INFO - Processed 109900000 reads so far
2011-05-20 05:32:47,284 - INFO - Processed 110000000 reads so far
2011-05-20 05:32:58,929 - INFO - Processed 110100000 reads so far
2011-05-20 05:33:06,790 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:62990050-83010050
2011-05-20 05:33:09,817 - INFO - Processed 110200000 reads so far
2011-05-20 05:33:21,126 - INFO - Processed 110300000 reads so far
2011-05-20 05:33:29,881 - INFO - Processed 110400000 reads so far
2011-05-20 05:33:39,004 - INFO - Processed 110500000 reads so far
2011-05-20 05:33:48,296 - INFO - Processed 110600000 reads so far
2011-05-20 05:33:57,834 - INFO - Processed 110700000 reads so far
2011-05-20 05:34:04,694 - INFO - Processed 110800000 reads so far
2011-05-20 05:34:13,853 - INFO - Processed 110900000 reads so far
2011-05-20 05:34:23,351 - INFO - Processed 111000000 reads so far
2011-05-20 05:34:30,821 - INFO - Processed 111100000 reads so far
2011-05-20 05:34:37,647 - INFO - Processed 111200000 reads so far
2011-05-20 05:34:42,425 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:82990066-103010066
2011-05-20 05:34:48,692 - INFO - Processed 111300000 reads so far
2011-05-20 05:34:57,027 - INFO - Processed 111400000 reads so far
2011-05-20 05:35:05,619 - INFO - Processed 111500000 reads so far
2011-05-20 05:35:17,284 - INFO - Processed 111600000 reads so far
2011-05-20 05:35:28,410 - INFO - Processed 111700000 reads so far
2011-05-20 05:35:35,920 - INFO - Processed 111800000 reads so far
2011-05-20 05:35:45,150 - INFO - Processed 111900000 reads so far
2011-05-20 05:35:57,245 - INFO - Processed 112000000 reads so far
2011-05-20 05:36:04,356 - INFO - Processed 112100000 reads so far
2011-05-20 05:36:11,138 - INFO - Processed 112200000 reads so far
2011-05-20 05:36:18,918 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:102990077-123010077
2011-05-20 05:36:19,686 - INFO - Processed 112300000 reads so far
2011-05-20 05:36:28,198 - INFO - Processed 112400000 reads so far
2011-05-20 05:36:38,904 - INFO - Processed 112500000 reads so far
2011-05-20 05:36:49,002 - INFO - Processed 112600000 reads so far
2011-05-20 05:36:59,196 - INFO - Processed 112700000 reads so far
2011-05-20 05:37:06,898 - INFO - Processed 112800000 reads so far
2011-05-20 05:37:17,475 - INFO - Processed 112900000 reads so far
2011-05-20 05:37:24,999 - INFO - Processed 113000000 reads so far
2011-05-20 05:37:33,098 - INFO - Processed 113100000 reads so far
2011-05-20 05:37:44,055 - INFO - Processed 113200000 reads so far
2011-05-20 05:37:52,098 - INFO - Processed 113300000 reads so far
2011-05-20 05:38:01,309 - INFO - Processed 113400000 reads so far
2011-05-20 05:38:12,297 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:122990104-143010104
2011-05-20 05:38:12,433 - INFO - Processed 113500000 reads so far
2011-05-20 05:38:20,788 - INFO - Processed 113600000 reads so far
2011-05-20 05:38:30,132 - INFO - Processed 113700000 reads so far
2011-05-20 05:38:40,270 - INFO - Processed 113800000 reads so far
2011-05-20 05:38:51,209 - INFO - Processed 113900000 reads so far
2011-05-20 05:39:01,243 - INFO - Processed 114000000 reads so far
2011-05-20 05:39:11,432 - INFO - Processed 114100000 reads so far
2011-05-20 05:39:22,428 - INFO - Processed 114200000 reads so far
2011-05-20 05:39:33,753 - INFO - Processed 114300000 reads so far
2011-05-20 05:39:40,654 - INFO - Processed 114400000 reads so far
2011-05-20 05:39:47,452 - INFO - Processed 114500000 reads so far
2011-05-20 05:39:54,207 - INFO - Processed 114600000 reads so far
2011-05-20 05:40:00,882 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:142990125-163010125
2011-05-20 05:40:03,393 - INFO - Processed 114700000 reads so far
2011-05-20 05:40:13,268 - INFO - Processed 114800000 reads so far
2011-05-20 05:40:21,547 - INFO - Processed 114900000 reads so far
2011-05-20 05:40:30,529 - INFO - Processed 115000000 reads so far
2011-05-20 05:40:40,594 - INFO - Processed 115100000 reads so far
2011-05-20 05:40:50,450 - INFO - Processed 115200000 reads so far
2011-05-20 05:40:54,739 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5_random:0-20010094
2011-05-20 05:40:55,992 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:2989987-23009987
2011-05-20 05:41:01,625 - INFO - Processed 115300000 reads so far
2011-05-20 05:41:11,797 - INFO - Processed 115400000 reads so far
2011-05-20 05:41:18,557 - INFO - Processed 115500000 reads so far
2011-05-20 05:41:28,096 - INFO - Processed 115600000 reads so far
2011-05-20 05:41:37,713 - INFO - Processed 115700000 reads so far
2011-05-20 05:41:50,332 - INFO - Processed 115800000 reads so far
2011-05-20 05:41:59,631 - INFO - Processed 115900000 reads so far
2011-05-20 05:42:07,437 - INFO - Processed 116000000 reads so far
2011-05-20 05:42:16,764 - INFO - Processed 116100000 reads so far
2011-05-20 05:42:29,265 - INFO - Processed 116200000 reads so far
2011-05-20 05:42:36,046 - INFO - Processed 116300000 reads so far
2011-05-20 05:42:36,291 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:22990009-43010009
2011-05-20 05:42:43,307 - INFO - Processed 116400000 reads so far
2011-05-20 05:42:51,694 - INFO - Processed 116500000 reads so far
2011-05-20 05:43:02,761 - INFO - Processed 116600000 reads so far
2011-05-20 05:43:11,928 - INFO - Processed 116700000 reads so far
2011-05-20 05:43:19,421 - INFO - Processed 116800000 reads so far
2011-05-20 05:43:29,632 - INFO - Processed 116900000 reads so far
2011-05-20 05:43:37,352 - INFO - Processed 117000000 reads so far
2011-05-20 05:43:44,021 - INFO - Processed 117100000 reads so far
2011-05-20 05:43:52,482 - INFO - Processed 117200000 reads so far
2011-05-20 05:44:01,477 - INFO - Processed 117300000 reads so far
2011-05-20 05:44:08,311 - INFO - Processed 117400000 reads so far
2011-05-20 05:44:09,914 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:42990010-63010010
2011-05-20 05:44:15,860 - INFO - Processed 117500000 reads so far
2011-05-20 05:44:22,986 - INFO - Processed 117600000 reads so far
2011-05-20 05:44:30,111 - INFO - Processed 117700000 reads so far
2011-05-20 05:44:37,244 - INFO - Processed 117800000 reads so far
2011-05-20 05:44:44,109 - INFO - Processed 117900000 reads so far
2011-05-20 05:44:51,395 - INFO - Processed 118000000 reads so far
2011-05-20 05:44:58,675 - INFO - Processed 118100000 reads so far
2011-05-20 05:45:06,501 - INFO - Processed 118200000 reads so far
2011-05-20 05:45:14,436 - INFO - Processed 118300000 reads so far
2011-05-20 05:45:22,120 - INFO - Processed 118400000 reads so far
2011-05-20 05:45:30,910 - INFO - Processed 118500000 reads so far
2011-05-20 05:45:37,099 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:62990044-83010044
2011-05-20 05:45:41,327 - INFO - Processed 118600000 reads so far
2011-05-20 05:45:50,312 - INFO - Processed 118700000 reads so far
2011-05-20 05:46:00,261 - INFO - Processed 118800000 reads so far
2011-05-20 05:46:10,921 - INFO - Processed 118900000 reads so far
2011-05-20 05:46:22,233 - INFO - Processed 119000000 reads so far
2011-05-20 05:46:34,148 - INFO - Processed 119100000 reads so far
2011-05-20 05:46:43,766 - INFO - Processed 119200000 reads so far
2011-05-20 05:46:54,242 - INFO - Processed 119300000 reads so far
2011-05-20 05:47:04,233 - INFO - Processed 119400000 reads so far
2011-05-20 05:47:14,963 - INFO - Processed 119500000 reads so far
2011-05-20 05:47:25,164 - INFO - Processed 119600000 reads so far
2011-05-20 05:47:25,820 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:82990045-103010045
2011-05-20 05:47:34,985 - INFO - Processed 119700000 reads so far
2011-05-20 05:47:44,239 - INFO - Processed 119800000 reads so far
2011-05-20 05:47:53,226 - INFO - Processed 119900000 reads so far
2011-05-20 05:48:06,043 - INFO - Processed 120000000 reads so far
2011-05-20 05:48:18,548 - INFO - Processed 120100000 reads so far
2011-05-20 05:48:27,808 - INFO - Processed 120200000 reads so far
2011-05-20 05:48:37,843 - INFO - Processed 120300000 reads so far
2011-05-20 05:48:48,955 - INFO - Processed 120400000 reads so far
2011-05-20 05:48:59,164 - INFO - Processed 120500000 reads so far
2011-05-20 05:49:12,166 - INFO - Processed 120600000 reads so far
2011-05-20 05:49:23,311 - INFO - Processed 120700000 reads so far
2011-05-20 05:49:34,826 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:102990050-123010050
2011-05-20 05:49:36,276 - INFO - Processed 120800000 reads so far
2011-05-20 05:49:47,747 - INFO - Processed 120900000 reads so far
2011-05-20 05:49:57,626 - INFO - Processed 121000000 reads so far
2011-05-20 05:50:05,302 - INFO - Processed 121100000 reads so far
2011-05-20 05:50:16,237 - INFO - Processed 121200000 reads so far
2011-05-20 05:50:23,896 - INFO - Processed 121300000 reads so far
2011-05-20 05:50:32,371 - INFO - Processed 121400000 reads so far
2011-05-20 05:50:41,697 - INFO - Processed 121500000 reads so far
2011-05-20 05:50:50,082 - INFO - Processed 121600000 reads so far
2011-05-20 05:50:58,571 - INFO - Processed 121700000 reads so far
2011-05-20 05:51:05,691 - INFO - Processed 121800000 reads so far
2011-05-20 05:51:14,561 - INFO - Processed 121900000 reads so far
2011-05-20 05:51:22,647 - INFO - Processed 122000000 reads so far
2011-05-20 05:51:35,773 - INFO - Processed 122100000 reads so far
2011-05-20 05:51:46,254 - INFO - Processed 122200000 reads so far
2011-05-20 05:51:57,580 - INFO - Processed 122300000 reads so far
2011-05-20 05:52:09,014 - INFO - Processed 122400000 reads so far
2011-05-20 05:52:20,111 - INFO - Processed 122500000 reads so far
2011-05-20 05:52:29,369 - INFO - Processed 122600000 reads so far
2011-05-20 05:52:42,917 - INFO - Processed 122700000 reads so far
2011-05-20 05:52:52,763 - INFO - Processed 122800000 reads so far
2011-05-20 05:53:02,995 - INFO - Processed 122900000 reads so far
2011-05-20 05:53:02,998 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:122990057-143010057
2011-05-20 05:53:15,059 - INFO - Processed 123000000 reads so far
2011-05-20 05:53:25,393 - INFO - Processed 123100000 reads so far
2011-05-20 05:53:36,031 - INFO - Processed 123200000 reads so far
2011-05-20 05:53:48,223 - INFO - Processed 123300000 reads so far
2011-05-20 05:53:57,845 - INFO - Processed 123400000 reads so far
2011-05-20 05:54:09,736 - INFO - Processed 123500000 reads so far
2011-05-20 05:54:20,359 - INFO - Processed 123600000 reads so far
2011-05-20 05:54:30,852 - INFO - Processed 123700000 reads so far
2011-05-20 05:54:39,646 - INFO - Processed 123800000 reads so far
2011-05-20 05:54:52,000 - INFO - Processed 123900000 reads so far
2011-05-20 05:55:03,612 - INFO - Processed 124000000 reads so far
2011-05-20 05:55:06,970 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:142990062-163010062
2011-05-20 05:55:13,477 - INFO - Processed 124100000 reads so far
2011-05-20 05:55:22,869 - INFO - Processed 124200000 reads so far
2011-05-20 05:55:32,644 - INFO - Processed 124300000 reads so far
2011-05-20 05:55:42,684 - INFO - Processed 124400000 reads so far
2011-05-20 05:55:44,002 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:2990013-23010013
2011-05-20 05:55:52,552 - INFO - Processed 124500000 reads so far
2011-05-20 05:56:02,601 - INFO - Processed 124600000 reads so far
2011-05-20 05:56:11,888 - INFO - Processed 124700000 reads so far
2011-05-20 05:56:21,063 - INFO - Processed 124800000 reads so far
2011-05-20 05:56:29,958 - INFO - Processed 124900000 reads so far
2011-05-20 05:56:43,071 - INFO - Processed 125000000 reads so far
2011-05-20 05:56:51,763 - INFO - Processed 125100000 reads so far
2011-05-20 05:57:00,215 - INFO - Processed 125200000 reads so far
2011-05-20 05:57:10,650 - INFO - Processed 125300000 reads so far
2011-05-20 05:57:20,186 - INFO - Processed 125400000 reads so far
2011-05-20 05:57:30,934 - INFO - Processed 125500000 reads so far
2011-05-20 05:57:34,561 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:22990015-43010015
2011-05-20 05:57:40,984 - INFO - Processed 125600000 reads so far
2011-05-20 05:57:52,129 - INFO - Processed 125700000 reads so far
2011-05-20 05:58:02,703 - INFO - Processed 125800000 reads so far
2011-05-20 05:58:12,488 - INFO - Processed 125900000 reads so far
2011-05-20 05:58:22,286 - INFO - Processed 126000000 reads so far
2011-05-20 05:58:33,312 - INFO - Processed 126100000 reads so far
2011-05-20 05:58:44,398 - INFO - Processed 126200000 reads so far
2011-05-20 05:58:54,851 - INFO - Processed 126300000 reads so far
2011-05-20 05:59:03,896 - INFO - Processed 126400000 reads so far
2011-05-20 05:59:15,602 - INFO - Processed 126500000 reads so far
2011-05-20 05:59:15,868 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:46346358-66366358
2011-05-20 05:59:24,968 - INFO - Processed 126600000 reads so far
2011-05-20 05:59:33,283 - INFO - Processed 126700000 reads so far
2011-05-20 05:59:43,435 - INFO - Processed 126800000 reads so far
2011-05-20 05:59:52,259 - INFO - Processed 126900000 reads so far
2011-05-20 06:00:00,817 - INFO - Processed 127000000 reads so far
2011-05-20 06:00:09,714 - INFO - Processed 127100000 reads so far
2011-05-20 06:00:21,940 - INFO - Processed 127200000 reads so far
2011-05-20 06:00:32,452 - INFO - Processed 127300000 reads so far
2011-05-20 06:00:41,234 - INFO - Processed 127400000 reads so far
2011-05-20 06:00:50,013 - INFO - Processed 127500000 reads so far
2011-05-20 06:00:58,704 - INFO - Processed 127600000 reads so far
2011-05-20 06:01:03,924 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:66346365-86366365
2011-05-20 06:01:06,760 - INFO - Processed 127700000 reads so far
2011-05-20 06:01:15,382 - INFO - Processed 127800000 reads so far
2011-05-20 06:01:26,767 - INFO - Processed 127900000 reads so far
2011-05-20 06:01:41,492 - INFO - Processed 128000000 reads so far
2011-05-20 06:01:52,602 - INFO - Processed 128100000 reads so far
2011-05-20 06:02:01,618 - INFO - Processed 128200000 reads so far
2011-05-20 06:02:12,072 - INFO - Processed 128300000 reads so far
2011-05-20 06:02:22,186 - INFO - Processed 128400000 reads so far
2011-05-20 06:02:32,277 - INFO - Processed 128500000 reads so far
2011-05-20 06:02:43,440 - INFO - Processed 128600000 reads so far
2011-05-20 06:02:52,255 - INFO - Processed 128700000 reads so far
2011-05-20 06:03:03,358 - INFO - Processed 128800000 reads so far
2011-05-20 06:03:04,764 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:86346367-106366367
2011-05-20 06:03:14,613 - INFO - Processed 128900000 reads so far
2011-05-20 06:03:26,450 - INFO - Processed 129000000 reads so far
2011-05-20 06:03:40,241 - INFO - Processed 129100000 reads so far
2011-05-20 06:03:51,151 - INFO - Processed 129200000 reads so far
2011-05-20 06:04:00,700 - INFO - Processed 129300000 reads so far
2011-05-20 06:04:11,753 - INFO - Processed 129400000 reads so far
2011-05-20 06:04:23,505 - INFO - Processed 129500000 reads so far
2011-05-20 06:04:35,785 - INFO - Processed 129600000 reads so far
2011-05-20 06:04:46,937 - INFO - Processed 129700000 reads so far
2011-05-20 06:04:58,447 - INFO - Processed 129800000 reads so far
2011-05-20 06:05:07,384 - INFO - Processed 129900000 reads so far
2011-05-20 06:05:10,775 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:106346409-126366409
2011-05-20 06:05:17,986 - INFO - Processed 130000000 reads so far
2011-05-20 06:05:26,552 - INFO - Processed 130100000 reads so far
2011-05-20 06:05:37,345 - INFO - Processed 130200000 reads so far
2011-05-20 06:05:47,393 - INFO - Processed 130300000 reads so far
2011-05-20 06:05:58,789 - INFO - Processed 130400000 reads so far
2011-05-20 06:06:08,502 - INFO - Processed 130500000 reads so far
2011-05-20 06:06:16,516 - INFO - Processed 130600000 reads so far
2011-05-20 06:06:26,461 - INFO - Processed 130700000 reads so far
2011-05-20 06:06:35,808 - INFO - Processed 130800000 reads so far
2011-05-20 06:06:46,562 - INFO - Processed 130900000 reads so far
2011-05-20 06:06:57,254 - INFO - Processed 131000000 reads so far
2011-05-20 06:07:03,891 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:126346429-146366429
2011-05-20 06:07:07,269 - INFO - Processed 131100000 reads so far
2011-05-20 06:07:17,475 - INFO - Processed 131200000 reads so far
2011-05-20 06:07:28,423 - INFO - Processed 131300000 reads so far
2011-05-20 06:07:40,300 - INFO - Processed 131400000 reads so far
2011-05-20 06:07:49,269 - INFO - Processed 131500000 reads so far
2011-05-20 06:08:00,775 - INFO - Processed 131600000 reads so far
2011-05-20 06:08:10,573 - INFO - Processed 131700000 reads so far
2011-05-20 06:08:20,294 - INFO - Processed 131800000 reads so far
2011-05-20 06:08:29,440 - INFO - Processed 131900000 reads so far
2011-05-20 06:08:38,968 - INFO - Processed 132000000 reads so far
2011-05-20 06:08:52,155 - INFO - Processed 132100000 reads so far
2011-05-20 06:09:01,609 - INFO - Processed 132200000 reads so far
2011-05-20 06:09:09,467 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:146346467-166366467
2011-05-20 06:09:11,731 - INFO - Processed 132300000 reads so far
2011-05-20 06:09:22,047 - INFO - Processed 132400000 reads so far
2011-05-20 06:09:30,102 - INFO - Processed 132500000 reads so far
2011-05-20 06:09:41,051 - INFO - Processed 132600000 reads so far
2011-05-20 06:09:50,737 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7_random:0-20010218
2011-05-20 06:09:52,394 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:2990057-23010057
2011-05-20 06:09:53,703 - INFO - Processed 132700000 reads so far
2011-05-20 06:10:04,928 - INFO - Processed 132800000 reads so far
2011-05-20 06:10:14,269 - INFO - Processed 132900000 reads so far
2011-05-20 06:10:24,949 - INFO - Processed 133000000 reads so far
2011-05-20 06:10:41,765 - INFO - Processed 133100000 reads so far
2011-05-20 06:10:52,915 - INFO - Processed 133200000 reads so far
2011-05-20 06:11:08,051 - INFO - Processed 133300000 reads so far
2011-05-20 06:11:18,256 - INFO - Processed 133400000 reads so far
2011-05-20 06:11:31,898 - INFO - Processed 133500000 reads so far
2011-05-20 06:11:43,597 - INFO - Processed 133600000 reads so far
2011-05-20 06:11:55,068 - INFO - Processed 133700000 reads so far
2011-05-20 06:12:06,492 - INFO - Processed 133800000 reads so far
2011-05-20 06:12:15,882 - INFO - Processed 133900000 reads so far
2011-05-20 06:12:32,069 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:22990061-43010061
2011-05-20 06:12:33,337 - INFO - Processed 134000000 reads so far
2011-05-20 06:12:43,180 - INFO - Processed 134100000 reads so far
2011-05-20 06:12:57,622 - INFO - Processed 134200000 reads so far
2011-05-20 06:13:09,917 - INFO - Processed 134300000 reads so far
2011-05-20 06:13:28,325 - INFO - Processed 134400000 reads so far
2011-05-20 06:13:40,634 - INFO - Processed 134500000 reads so far
2011-05-20 06:13:50,424 - INFO - Processed 134600000 reads so far
2011-05-20 06:14:00,580 - INFO - Processed 134700000 reads so far
2011-05-20 06:14:11,773 - INFO - Processed 134800000 reads so far
2011-05-20 06:14:22,522 - INFO - Processed 134900000 reads so far
2011-05-20 06:14:32,485 - INFO - Processed 135000000 reads so far
2011-05-20 06:14:41,186 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:42990141-63010141
2011-05-20 06:14:44,390 - INFO - Processed 135100000 reads so far
2011-05-20 06:14:54,993 - INFO - Processed 135200000 reads so far
2011-05-20 06:15:05,282 - INFO - Processed 135300000 reads so far
2011-05-20 06:15:17,160 - INFO - Processed 135400000 reads so far
2011-05-20 06:15:28,452 - INFO - Processed 135500000 reads so far
2011-05-20 06:15:38,799 - INFO - Processed 135600000 reads so far
2011-05-20 06:15:49,569 - INFO - Processed 135700000 reads so far
2011-05-20 06:16:00,860 - INFO - Processed 135800000 reads so far
2011-05-20 06:16:10,891 - INFO - Processed 135900000 reads so far
2011-05-20 06:16:22,870 - INFO - Processed 136000000 reads so far
2011-05-20 06:16:27,965 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:62990143-83010143
2011-05-20 06:16:34,523 - INFO - Processed 136100000 reads so far
2011-05-20 06:16:45,538 - INFO - Processed 136200000 reads so far
2011-05-20 06:16:53,788 - INFO - Processed 136300000 reads so far
2011-05-20 06:17:03,553 - INFO - Processed 136400000 reads so far
2011-05-20 06:17:13,652 - INFO - Processed 136500000 reads so far
2011-05-20 06:17:25,850 - INFO - Processed 136600000 reads so far
2011-05-20 06:17:37,622 - INFO - Processed 136700000 reads so far
2011-05-20 06:17:51,775 - INFO - Processed 136800000 reads so far
2011-05-20 06:18:03,030 - INFO - Processed 136900000 reads so far
2011-05-20 06:18:15,001 - INFO - Processed 137000000 reads so far
2011-05-20 06:18:27,108 - INFO - Processed 137100000 reads so far
2011-05-20 06:18:34,838 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:82990195-103010195
2011-05-20 06:18:38,022 - INFO - Processed 137200000 reads so far
2011-05-20 06:18:48,191 - INFO - Processed 137300000 reads so far
2011-05-20 06:19:00,622 - INFO - Processed 137400000 reads so far
2011-05-20 06:19:13,743 - INFO - Processed 137500000 reads so far
2011-05-20 06:19:24,833 - INFO - Processed 137600000 reads so far
2011-05-20 06:19:35,892 - INFO - Processed 137700000 reads so far
2011-05-20 06:19:46,531 - INFO - Processed 137800000 reads so far
2011-05-20 06:19:57,063 - INFO - Processed 137900000 reads so far
2011-05-20 06:20:05,881 - INFO - Processed 138000000 reads so far
2011-05-20 06:20:15,775 - INFO - Processed 138100000 reads so far
2011-05-20 06:20:24,271 - INFO - Processed 138200000 reads so far
2011-05-20 06:20:34,114 - INFO - Processed 138300000 reads so far
2011-05-20 06:20:34,704 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:102990196-123010196
2011-05-20 06:20:43,146 - INFO - Processed 138400000 reads so far
2011-05-20 06:20:52,664 - INFO - Processed 138500000 reads so far
2011-05-20 06:21:03,860 - INFO - Processed 138600000 reads so far
2011-05-20 06:21:17,044 - INFO - Processed 138700000 reads so far
2011-05-20 06:21:27,182 - INFO - Processed 138800000 reads so far
2011-05-20 06:21:37,793 - INFO - Processed 138900000 reads so far
2011-05-20 06:21:48,849 - INFO - Processed 139000000 reads so far
2011-05-20 06:21:59,570 - INFO - Processed 139100000 reads so far
2011-05-20 06:22:09,729 - INFO - Processed 139200000 reads so far
2011-05-20 06:22:21,263 - INFO - Processed 139300000 reads so far
2011-05-20 06:22:32,236 - INFO - Processed 139400000 reads so far
2011-05-20 06:22:38,994 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:122990202-143010202
2011-05-20 06:22:45,883 - INFO - Processed 139500000 reads so far
2011-05-20 06:22:58,069 - INFO - Processed 139600000 reads so far
2011-05-20 06:23:11,817 - INFO - Processed 139700000 reads so far
2011-05-20 06:23:27,218 - INFO - Processed 139800000 reads so far
2011-05-20 06:23:40,070 - INFO - Processed 139900000 reads so far
2011-05-20 06:23:51,905 - INFO - Processed 140000000 reads so far
2011-05-20 06:23:53,653 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8_random:0-20010000
2011-05-20 06:24:04,294 - INFO - Processed 140100000 reads so far
2011-05-20 06:24:13,785 - INFO - Processed 140200000 reads so far
2011-05-20 06:24:13,973 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:2989934-23009934
2011-05-20 06:24:23,395 - INFO - Processed 140300000 reads so far
2011-05-20 06:24:34,279 - INFO - Processed 140400000 reads so far
2011-05-20 06:24:44,908 - INFO - Processed 140500000 reads so far
2011-05-20 06:24:54,340 - INFO - Processed 140600000 reads so far
2011-05-20 06:25:03,580 - INFO - Processed 140700000 reads so far
2011-05-20 06:25:14,409 - INFO - Processed 140800000 reads so far
2011-05-20 06:25:25,794 - INFO - Processed 140900000 reads so far
2011-05-20 06:25:35,529 - INFO - Processed 141000000 reads so far
2011-05-20 06:25:46,148 - INFO - Processed 141100000 reads so far
2011-05-20 06:25:55,854 - INFO - Processed 141200000 reads so far
2011-05-20 06:26:05,625 - INFO - Processed 141300000 reads so far
2011-05-20 06:26:15,922 - INFO - Processed 141400000 reads so far
2011-05-20 06:26:26,610 - INFO - Processed 141500000 reads so far
2011-05-20 06:26:36,422 - INFO - Processed 141600000 reads so far
2011-05-20 06:26:45,710 - INFO - Processed 141700000 reads so far
2011-05-20 06:26:55,123 - INFO - Processed 141800000 reads so far
2011-05-20 06:27:05,803 - INFO - Processed 141900000 reads so far
2011-05-20 06:27:15,488 - INFO - Processed 142000000 reads so far
2011-05-20 06:27:26,044 - INFO - Processed 142100000 reads so far
2011-05-20 06:27:36,675 - INFO - Processed 142200000 reads so far
2011-05-20 06:27:45,980 - INFO - Processed 142300000 reads so far
2011-05-20 06:27:55,299 - INFO - Processed 142400000 reads so far
2011-05-20 06:28:04,336 - INFO - Processed 142500000 reads so far
2011-05-20 06:28:13,352 - INFO - Processed 142600000 reads so far
2011-05-20 06:28:22,352 - INFO - Processed 142700000 reads so far
2011-05-20 06:28:31,249 - INFO - Processed 142800000 reads so far
2011-05-20 06:28:40,908 - INFO - Processed 142900000 reads so far
2011-05-20 06:28:47,803 - INFO - Processed 143000000 reads so far
2011-05-20 06:28:56,495 - INFO - Processed 143100000 reads so far
2011-05-20 06:29:06,025 - INFO - Processed 143200000 reads so far
2011-05-20 06:29:15,060 - INFO - Processed 143300000 reads so far
2011-05-20 06:29:24,462 - INFO - Processed 143400000 reads so far
2011-05-20 06:29:30,904 - INFO - Processed 143500000 reads so far
2011-05-20 06:29:40,052 - INFO - Processed 143600000 reads so far
2011-05-20 06:29:47,871 - INFO - Processed 143700000 reads so far
2011-05-20 06:29:57,236 - INFO - Processed 143800000 reads so far
2011-05-20 06:30:04,161 - INFO - Processed 143900000 reads so far
2011-05-20 06:30:11,886 - INFO - Processed 144000000 reads so far
2011-05-20 06:30:20,314 - INFO - Processed 144100000 reads so far
2011-05-20 06:30:28,366 - INFO - Processed 144200000 reads so far
2011-05-20 06:30:37,579 - INFO - Processed 144300000 reads so far
2011-05-20 06:30:45,089 - INFO - Processed 144400000 reads so far
2011-05-20 06:30:54,789 - INFO - Processed 144500000 reads so far
2011-05-20 06:31:00,802 - INFO - Processed 144600000 reads so far
2011-05-20 06:31:07,402 - INFO - Processed 144700000 reads so far
2011-05-20 06:31:13,769 - INFO - Processed 144800000 reads so far
2011-05-20 06:31:21,171 - INFO - Processed 144900000 reads so far
2011-05-20 06:31:31,457 - INFO - Processed 145000000 reads so far
2011-05-20 06:31:40,100 - INFO - Processed 145100000 reads so far
2011-05-20 06:31:49,174 - INFO - Processed 145200000 reads so far
2011-05-20 06:32:00,577 - INFO - Processed 145300000 reads so far
2011-05-20 06:32:06,753 - INFO - Processed 145400000 reads so far
2011-05-20 06:32:15,440 - INFO - Processed 145500000 reads so far
2011-05-20 06:32:25,694 - INFO - Processed 145600000 reads so far
2011-05-20 06:32:32,774 - INFO - Processed 145700000 reads so far
2011-05-20 06:32:42,104 - INFO - Processed 145800000 reads so far
2011-05-20 06:32:47,849 - INFO - Processed 145900000 reads so far
2011-05-20 06:32:56,613 - INFO - Processed 146000000 reads so far
2011-05-20 06:33:05,767 - INFO - Processed 146100000 reads so far
2011-05-20 06:33:13,964 - INFO - Processed 146200000 reads so far
2011-05-20 06:33:20,173 - INFO - Processed 146300000 reads so far
2011-05-20 06:33:27,372 - INFO - Processed 146400000 reads so far
2011-05-20 06:33:35,263 - INFO - Processed 146500000 reads so far
2011-05-20 06:33:44,361 - INFO - Processed 146600000 reads so far
2011-05-20 06:33:51,959 - INFO - Processed 146700000 reads so far
2011-05-20 06:33:59,400 - INFO - Processed 146800000 reads so far
2011-05-20 06:34:05,451 - INFO - Processed 146900000 reads so far
2011-05-20 06:34:11,141 - INFO - Processed 147000000 reads so far
2011-05-20 06:34:17,614 - INFO - Processed 147100000 reads so far
2011-05-20 06:34:23,376 - INFO - Processed 147200000 reads so far
2011-05-20 06:34:30,981 - INFO - Processed 147300000 reads so far
2011-05-20 06:34:39,111 - INFO - Processed 147400000 reads so far
2011-05-20 06:34:45,195 - INFO - Processed 147500000 reads so far
2011-05-20 06:34:52,360 - INFO - Processed 147600000 reads so far
2011-05-20 06:35:00,212 - INFO - Processed 147700000 reads so far
2011-05-20 06:35:07,620 - INFO - Processed 147800000 reads so far
2011-05-20 06:35:18,880 - INFO - Processed 147900000 reads so far
2011-05-20 06:35:27,991 - INFO - Processed 148000000 reads so far
2011-05-20 06:35:38,203 - INFO - Processed 148100000 reads so far
2011-05-20 06:35:52,472 - INFO - Processed 148200000 reads so far
2011-05-20 06:35:59,724 - INFO - Processed 148300000 reads so far
2011-05-20 06:36:06,909 - INFO - Processed 148400000 reads so far
2011-05-20 06:36:14,742 - INFO - Processed 148500000 reads so far
2011-05-20 06:36:22,460 - INFO - Processed 148600000 reads so far
2011-05-20 06:36:31,629 - INFO - Processed 148700000 reads so far
2011-05-20 06:36:39,587 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:22989941-43009941
2011-05-20 06:36:40,730 - INFO - Processed 148800000 reads so far
2011-05-20 06:36:47,501 - INFO - Processed 148900000 reads so far
2011-05-20 06:36:55,093 - INFO - Processed 149000000 reads so far
2011-05-20 06:37:02,885 - INFO - Processed 149100000 reads so far
2011-05-20 06:37:12,208 - INFO - Processed 149200000 reads so far
2011-05-20 06:37:22,949 - INFO - Processed 149300000 reads so far
2011-05-20 06:37:36,544 - INFO - Processed 149400000 reads so far
2011-05-20 06:37:43,994 - INFO - Processed 149500000 reads so far
2011-05-20 06:37:49,938 - INFO - Processed 149600000 reads so far
2011-05-20 06:37:58,968 - INFO - Processed 149700000 reads so far
2011-05-20 06:38:07,269 - INFO - Processed 149800000 reads so far
2011-05-20 06:38:14,277 - INFO - Processed 149900000 reads so far
2011-05-20 06:38:21,611 - INFO - Processed 150000000 reads so far
2011-05-20 06:38:26,179 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:42989952-63009952
2011-05-20 06:38:30,434 - INFO - Processed 150100000 reads so far
2011-05-20 06:38:38,885 - INFO - Processed 150200000 reads so far
2011-05-20 06:38:49,388 - INFO - Processed 150300000 reads so far
2011-05-20 06:38:58,157 - INFO - Processed 150400000 reads so far
2011-05-20 06:39:06,726 - INFO - Processed 150500000 reads so far
2011-05-20 06:39:16,056 - INFO - Processed 150600000 reads so far
2011-05-20 06:39:25,772 - INFO - Processed 150700000 reads so far
2011-05-20 06:39:32,742 - INFO - Processed 150800000 reads so far
2011-05-20 06:39:39,679 - INFO - Processed 150900000 reads so far
2011-05-20 06:39:50,516 - INFO - Processed 151000000 reads so far
2011-05-20 06:39:59,135 - INFO - Processed 151100000 reads so far
2011-05-20 06:40:09,050 - INFO - Processed 151200000 reads so far
2011-05-20 06:40:11,944 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:62989962-83009962
2011-05-20 06:40:17,832 - INFO - Processed 151300000 reads so far
2011-05-20 06:40:26,196 - INFO - Processed 151400000 reads so far
2011-05-20 06:40:35,126 - INFO - Processed 151500000 reads so far
2011-05-20 06:40:44,699 - INFO - Processed 151600000 reads so far
2011-05-20 06:40:56,368 - INFO - Processed 151700000 reads so far
2011-05-20 06:41:05,462 - INFO - Processed 151800000 reads so far
2011-05-20 06:41:12,915 - INFO - Processed 151900000 reads so far
2011-05-20 06:41:21,590 - INFO - Processed 152000000 reads so far
2011-05-20 06:41:31,567 - INFO - Processed 152100000 reads so far
2011-05-20 06:41:41,815 - INFO - Processed 152200000 reads so far
2011-05-20 06:41:51,441 - INFO - Processed 152300000 reads so far
2011-05-20 06:41:56,284 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:82989995-103009995
2011-05-20 06:42:00,922 - INFO - Processed 152400000 reads so far
2011-05-20 06:42:07,873 - INFO - Processed 152500000 reads so far
2011-05-20 06:42:14,723 - INFO - Processed 152600000 reads so far
2011-05-20 06:42:25,143 - INFO - Processed 152700000 reads so far
2011-05-20 06:42:36,218 - INFO - Processed 152800000 reads so far
2011-05-20 06:42:45,109 - INFO - Processed 152900000 reads so far
2011-05-20 06:42:54,194 - INFO - Processed 153000000 reads so far
2011-05-20 06:43:03,597 - INFO - Processed 153100000 reads so far
2011-05-20 06:43:11,815 - INFO - Processed 153200000 reads so far
2011-05-20 06:43:22,854 - INFO - Processed 153300000 reads so far
2011-05-20 06:43:36,073 - INFO - Processed 153400000 reads so far
2011-05-20 06:43:41,205 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:102989996-123009996
2011-05-20 06:43:46,628 - INFO - Processed 153500000 reads so far
2011-05-20 06:43:57,096 - INFO - Processed 153600000 reads so far
2011-05-20 06:44:07,581 - INFO - Processed 153700000 reads so far
2011-05-20 06:44:18,432 - INFO - Processed 153800000 reads so far
2011-05-20 06:44:31,042 - INFO - Processed 153900000 reads so far
2011-05-20 06:44:41,219 - INFO - Processed 154000000 reads so far
2011-05-20 06:44:51,500 - INFO - Processed 154100000 reads so far
2011-05-20 06:45:00,913 - INFO - Processed 154200000 reads so far
2011-05-20 06:45:09,969 - INFO - Processed 154300000 reads so far
2011-05-20 06:45:20,947 - INFO - Processed 154400000 reads so far
2011-05-20 06:45:32,647 - INFO - Processed 154500000 reads so far
2011-05-20 06:45:41,254 - INFO - Processed 154600000 reads so far
2011-05-20 06:45:45,432 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:122990030-143010030
2011-05-20 06:45:52,027 - INFO - Processed 154700000 reads so far
2011-05-20 06:45:52,050 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9_random:0-20010005
2011-05-20 06:45:55,676 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrM:0-20010000
2011-05-20 06:46:00,613 - INFO - Processed 154800000 reads so far
2011-05-20 06:46:02,518 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrUn_random:0-20010000
2011-05-20 06:46:11,260 - INFO - Processed 154900000 reads so far
2011-05-20 06:46:19,704 - INFO - Processed 155000000 reads so far
2011-05-20 06:46:30,317 - INFO - Processed 155100000 reads so far
2011-05-20 06:46:41,684 - INFO - Processed 155200000 reads so far
2011-05-20 06:46:46,524 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:2990010-23010010
2011-05-20 06:46:49,167 - INFO - Processed 155300000 reads so far
2011-05-20 06:46:57,335 - INFO - Processed 155400000 reads so far
2011-05-20 06:47:05,957 - INFO - Processed 155500000 reads so far
2011-05-20 06:47:15,173 - INFO - Processed 155600000 reads so far
2011-05-20 06:47:23,970 - INFO - Processed 155700000 reads so far
2011-05-20 06:47:37,160 - INFO - Processed 155800000 reads so far
2011-05-20 06:47:45,640 - INFO - Processed 155900000 reads so far
2011-05-20 06:47:57,718 - INFO - Processed 156000000 reads so far
2011-05-20 06:48:07,864 - INFO - Processed 156100000 reads so far
2011-05-20 06:48:16,517 - INFO - Processed 156200000 reads so far
2011-05-20 06:48:25,257 - INFO - Processed 156300000 reads so far
2011-05-20 06:48:38,251 - INFO - Processed 156400000 reads so far
2011-05-20 06:48:47,299 - INFO - Processed 156500000 reads so far
2011-05-20 06:48:57,287 - INFO - Processed 156600000 reads so far
2011-05-20 06:48:57,890 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:22990073-43010073
2011-05-20 06:49:06,033 - INFO - Processed 156700000 reads so far
2011-05-20 06:49:16,185 - INFO - Processed 156800000 reads so far
2011-05-20 06:49:26,222 - INFO - Processed 156900000 reads so far
2011-05-20 06:49:38,167 - INFO - Processed 157000000 reads so far
2011-05-20 06:49:47,894 - INFO - Processed 157100000 reads so far
2011-05-20 06:49:57,909 - INFO - Processed 157200000 reads so far
2011-05-20 06:50:07,726 - INFO - Processed 157300000 reads so far
2011-05-20 06:50:17,858 - INFO - Processed 157400000 reads so far
2011-05-20 06:50:29,475 - INFO - Processed 157500000 reads so far
2011-05-20 06:50:41,696 - INFO - Processed 157600000 reads so far
2011-05-20 06:50:51,620 - INFO - Processed 157700000 reads so far
2011-05-20 06:51:02,805 - INFO - Processed 157800000 reads so far
2011-05-20 06:51:13,947 - INFO - Processed 157900000 reads so far
2011-05-20 06:51:17,861 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:42990099-63010099
2011-05-20 06:51:27,046 - INFO - Processed 158000000 reads so far
2011-05-20 06:51:38,247 - INFO - Processed 158100000 reads so far
2011-05-20 06:51:49,748 - INFO - Processed 158200000 reads so far
2011-05-20 06:52:00,885 - INFO - Processed 158300000 reads so far
2011-05-20 06:52:11,924 - INFO - Processed 158400000 reads so far
2011-05-20 06:52:22,603 - INFO - Processed 158500000 reads so far
2011-05-20 06:52:33,828 - INFO - Processed 158600000 reads so far
2011-05-20 06:52:46,275 - INFO - Processed 158700000 reads so far
2011-05-20 06:52:58,129 - INFO - Processed 158800000 reads so far
2011-05-20 06:53:10,315 - INFO - Processed 158900000 reads so far
2011-05-20 06:53:21,528 - INFO - Processed 159000000 reads so far
2011-05-20 06:53:22,943 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:62990118-83010118
2011-05-20 06:53:35,814 - INFO - Processed 159100000 reads so far
2011-05-20 06:53:47,501 - INFO - Processed 159200000 reads so far
2011-05-20 06:54:01,326 - INFO - Processed 159300000 reads so far
2011-05-20 06:54:12,485 - INFO - Processed 159400000 reads so far
2011-05-20 06:54:24,598 - INFO - Processed 159500000 reads so far
2011-05-20 06:54:35,766 - INFO - Processed 159600000 reads so far
2011-05-20 06:54:46,683 - INFO - Processed 159700000 reads so far
2011-05-20 06:54:59,158 - INFO - Processed 159800000 reads so far
2011-05-20 06:55:10,308 - INFO - Processed 159900000 reads so far
2011-05-20 06:55:22,240 - INFO - Processed 160000000 reads so far
2011-05-20 06:55:33,084 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:82990162-103010162
2011-05-20 06:55:33,526 - INFO - Processed 160100000 reads so far
2011-05-20 06:55:44,766 - INFO - Processed 160200000 reads so far
2011-05-20 06:55:56,185 - INFO - Processed 160300000 reads so far
2011-05-20 06:56:08,888 - INFO - Processed 160400000 reads so far
2011-05-20 06:56:20,176 - INFO - Processed 160500000 reads so far
2011-05-20 06:56:31,383 - INFO - Processed 160600000 reads so far
2011-05-20 06:56:42,419 - INFO - Processed 160700000 reads so far
2011-05-20 06:56:53,348 - INFO - Processed 160800000 reads so far
2011-05-20 06:57:04,361 - INFO - Processed 160900000 reads so far
2011-05-20 06:57:15,507 - INFO - Processed 161000000 reads so far
2011-05-20 06:57:26,534 - INFO - Processed 161100000 reads so far
2011-05-20 06:57:35,335 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:102990165-123010165
2011-05-20 06:57:39,292 - INFO - Processed 161200000 reads so far
2011-05-20 06:57:51,112 - INFO - Processed 161300000 reads so far
2011-05-20 06:58:01,856 - INFO - Processed 161400000 reads so far
2011-05-20 06:58:11,025 - INFO - Processed 161500000 reads so far
2011-05-20 06:58:21,419 - INFO - Processed 161600000 reads so far
2011-05-20 06:58:29,678 - INFO - Processed 161700000 reads so far
2011-05-20 06:58:37,256 - INFO - Processed 161800000 reads so far
2011-05-20 06:58:46,107 - INFO - Processed 161900000 reads so far
2011-05-20 06:58:54,411 - INFO - Processed 162000000 reads so far
2011-05-20 06:59:03,831 - INFO - Processed 162100000 reads so far
2011-05-20 06:59:09,246 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:122990180-143010180
2011-05-20 06:59:12,575 - INFO - Processed 162200000 reads so far
2011-05-20 06:59:23,055 - INFO - Processed 162300000 reads so far
2011-05-20 06:59:34,029 - INFO - Processed 162400000 reads so far
2011-05-20 06:59:42,206 - INFO - Processed 162500000 reads so far
2011-05-20 06:59:51,376 - INFO - Processed 162600000 reads so far
2011-05-20 06:59:59,425 - INFO - Processed 162700000 reads so far
2011-05-20 07:00:09,199 - INFO - Processed 162800000 reads so far
2011-05-20 07:00:18,094 - INFO - Processed 162900000 reads so far
2011-05-20 07:00:26,589 - INFO - Processed 163000000 reads so far
2011-05-20 07:00:33,952 - INFO - Processed 163100000 reads so far
2011-05-20 07:00:42,151 - INFO - Processed 163200000 reads so far
2011-05-20 07:00:48,259 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:142990215-163010215
2011-05-20 07:00:49,980 - INFO - Processed 163300000 reads so far
2011-05-20 07:00:58,366 - INFO - Processed 163400000 reads so far
2011-05-20 07:01:07,048 - INFO - Processed 163500000 reads so far
2011-05-20 07:01:15,704 - INFO - Processed 163600000 reads so far
2011-05-20 07:01:25,845 - INFO - Processed 163700000 reads so far
2011-05-20 07:01:36,612 - INFO - Processed 163800000 reads so far
2011-05-20 07:01:47,337 - INFO - Processed 163900000 reads so far
2011-05-20 07:01:58,815 - INFO - Processed 164000000 reads so far
2011-05-20 07:02:09,339 - INFO - Processed 164100000 reads so far
2011-05-20 07:02:18,388 - INFO - Processed 164200000 reads so far
2011-05-20 07:02:28,901 - INFO - Processed 164300000 reads so far
2011-05-20 07:02:30,598 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:162990251-183010251
2011-05-20 07:02:37,120 - INFO - Processed 164400000 reads so far
2011-05-20 07:02:47,766 - INFO - Processed 164500000 reads so far
2011-05-20 07:02:56,481 - INFO - Processed 164600000 reads so far
2011-05-20 07:03:03,819 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX_random:0-20010000
2011-05-20 07:03:07,235 - INFO - Processed 164700000 reads so far
2011-05-20 07:03:08,599 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY:0-20010744
2011-05-20 07:03:10,182 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:0-20012017
2011-05-20 07:03:15,573 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:19992026-40012026
2011-05-20 07:03:21,356 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:39998931-60018931
2011-05-20 07:03:21,529 - INFO - Processed 164800000 reads so far
2011-05-20 07:03:28,536 - INFO - Processed 164900000 reads so far
2011-05-20 07:03:32,576 - INFO - Processed 165000000 reads so far
2011-05-20 07:03:35,967 - INFO - Processed 165100000 reads so far
2011-05-20 07:03:39,870 - INFO - Processed 165200000 reads so far
2011-05-20 07:03:43,748 - INFO - Processed 165300000 reads so far
2011-05-20 07:03:47,379 - INFO - Processed 165400000 reads so far
2011-05-20 07:03:50,067 - INFO - Processed 165500000 reads so far
2011-05-20 07:03:52,929 - INFO - Processed 165600000 reads so far
2011-05-20 07:03:56,496 - INFO - Processed 165700000 reads so far
2011-05-20 07:04:00,891 - INFO - Processed 165800000 reads so far
2011-05-20 07:04:05,526 - INFO - Processed 165900000 reads so far
2011-05-20 07:04:09,000 - INFO - Processed 166000000 reads so far
2011-05-20 07:04:12,377 - INFO - Processed 166100000 reads so far
2011-05-20 07:04:15,419 - INFO - Processed 166200000 reads so far
2011-05-20 07:04:20,871 - INFO - Processed 166300000 reads so far
2011-05-20 07:04:25,228 - INFO - Processed 166400000 reads so far
2011-05-20 07:04:26,820 - INFO - Finished loading data. Outputting QC metrics
2011-05-20 07:04:52,670 - INFO - Finished outputting QC metrics
2011-05-20 07:04:52,794 - INFO - Finished generating QC metrics