2011-05-20 07:04:53,053 - INFO - Generating QC metrics for BAM File ['WTCHG_11821.bam']
2011-05-20 07:04:53,053 - INFO - Output will go to WTCHG_11821.qc.txt.tmp
2011-05-20 07:04:53,054 - INFO - Reading GC Map from file /data/Genomes/gcMap/Mouse37.gcMap.gz
2011-05-20 07:07:42,455 - INFO - Finished reading GC Map
2011-05-20 07:07:42,455 - INFO - Reading CDS from exon definition file /data/Genomes/annotation/Mouse37.refGene.txt.gz
2011-05-20 07:07:45,432 - INFO - Read 382138 exons (33804740 nucleotides) for 32 chromosomes
2011-05-20 07:07:45,434 - INFO - Computing coverage cut-off
2011-05-20 07:07:45,434 - INFO - Retrieving BAM file coverage info from samtools pileup
2011-05-20 07:07:51,587 - INFO - Processed 1000000 pile-up sites
2011-05-20 07:07:55,855 - INFO - Processed 2000000 pile-up sites
2011-05-20 07:08:00,611 - INFO - Processed 3000000 pile-up sites
2011-05-20 07:08:04,782 - INFO - Processed 4000000 pile-up sites
2011-05-20 07:08:08,825 - INFO - Processed 5000000 pile-up sites
2011-05-20 07:08:13,151 - INFO - Processed 6000000 pile-up sites
2011-05-20 07:08:17,585 - INFO - Processed 7000000 pile-up sites
2011-05-20 07:08:22,000 - INFO - Processed 8000000 pile-up sites
2011-05-20 07:08:26,729 - INFO - Processed 9000000 pile-up sites
2011-05-20 07:08:31,168 - INFO - Processed 10000000 pile-up sites
2011-05-20 07:08:35,104 - INFO - Processed 11000000 pile-up sites
2011-05-20 07:08:39,428 - INFO - Processed 12000000 pile-up sites
2011-05-20 07:08:44,065 - INFO - Processed 13000000 pile-up sites
2011-05-20 07:08:49,562 - INFO - Processed 14000000 pile-up sites
2011-05-20 07:08:53,596 - INFO - Processed 15000000 pile-up sites
2011-05-20 07:08:55,966 - INFO - Processed 16000000 pile-up sites
2011-05-20 07:09:00,397 - INFO - Processed 17000000 pile-up sites
2011-05-20 07:09:02,887 - INFO - Processed 18000000 pile-up sites
2011-05-20 07:09:06,985 - INFO - Processed 19000000 pile-up sites
2011-05-20 07:09:10,989 - INFO - Processed 20000000 pile-up sites
2011-05-20 07:09:15,159 - INFO - Processed 21000000 pile-up sites
2011-05-20 07:09:18,889 - INFO - Processed 22000000 pile-up sites
2011-05-20 07:09:22,721 - INFO - Processed 23000000 pile-up sites
2011-05-20 07:09:26,426 - INFO - Processed 24000000 pile-up sites
2011-05-20 07:09:29,938 - INFO - Processed 25000000 pile-up sites
2011-05-20 07:09:33,194 - INFO - Processed 26000000 pile-up sites
2011-05-20 07:09:37,739 - INFO - Processed 27000000 pile-up sites
2011-05-20 07:09:41,995 - INFO - Processed 28000000 pile-up sites
2011-05-20 07:09:45,743 - INFO - Processed 29000000 pile-up sites
2011-05-20 07:09:49,429 - INFO - Processed 30000000 pile-up sites
2011-05-20 07:09:51,802 - INFO - Processed 31000000 pile-up sites
2011-05-20 07:09:55,676 - INFO - Processed 32000000 pile-up sites
2011-05-20 07:10:10,613 - INFO - Processed 33000000 pile-up sites
2011-05-20 07:10:14,658 - INFO - Processed 34000000 pile-up sites
2011-05-20 07:10:23,002 - INFO - Processed 35000000 pile-up sites
2011-05-20 07:10:25,708 - INFO - Finished processing pile-up on 35611861 sites (200000003 nucleotides)
2011-05-20 07:10:25,708 - INFO - Coverage cut-off value is 33
2011-05-20 07:10:25,709 - INFO - Loading data into QC data manager
2011-05-20 07:10:25,934 - INFO - Reading data from BAM file WTCHG_11821.bam. All reads in file will be read
2011-05-20 07:10:25,978 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:2990015-23010015
2011-05-20 07:10:37,161 - INFO - Processed 100000 reads so far
2011-05-20 07:10:46,250 - INFO - Processed 200000 reads so far
2011-05-20 07:10:54,040 - INFO - Processed 300000 reads so far
2011-05-20 07:11:01,289 - INFO - Processed 400000 reads so far
2011-05-20 07:11:10,727 - INFO - Processed 500000 reads so far
2011-05-20 07:11:22,097 - INFO - Processed 600000 reads so far
2011-05-20 07:11:32,884 - INFO - Processed 700000 reads so far
2011-05-20 07:11:42,555 - INFO - Processed 800000 reads so far
2011-05-20 07:11:52,492 - INFO - Processed 900000 reads so far
2011-05-20 07:12:03,772 - INFO - Processed 1000000 reads so far
2011-05-20 07:12:12,986 - INFO - Processed 1100000 reads so far
2011-05-20 07:12:13,809 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:22990082-43010082
2011-05-20 07:12:22,752 - INFO - Processed 1200000 reads so far
2011-05-20 07:12:33,804 - INFO - Processed 1300000 reads so far
2011-05-20 07:12:41,259 - INFO - Processed 1400000 reads so far
2011-05-20 07:12:50,098 - INFO - Processed 1500000 reads so far
2011-05-20 07:13:01,247 - INFO - Processed 1600000 reads so far
2011-05-20 07:13:11,137 - INFO - Processed 1700000 reads so far
2011-05-20 07:13:19,624 - INFO - Processed 1800000 reads so far
2011-05-20 07:13:27,979 - INFO - Processed 1900000 reads so far
2011-05-20 07:13:37,479 - INFO - Processed 2000000 reads so far
2011-05-20 07:13:49,738 - INFO - Processed 2100000 reads so far
2011-05-20 07:13:58,033 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:42990090-63010090
2011-05-20 07:13:59,513 - INFO - Processed 2200000 reads so far
2011-05-20 07:14:09,507 - INFO - Processed 2300000 reads so far
2011-05-20 07:14:16,326 - INFO - Processed 2400000 reads so far
2011-05-20 07:14:26,979 - INFO - Processed 2500000 reads so far
2011-05-20 07:14:39,692 - INFO - Processed 2600000 reads so far
2011-05-20 07:14:51,192 - INFO - Processed 2700000 reads so far
2011-05-20 07:15:01,684 - INFO - Processed 2800000 reads so far
2011-05-20 07:15:11,084 - INFO - Processed 2900000 reads so far
2011-05-20 07:15:20,723 - INFO - Processed 3000000 reads so far
2011-05-20 07:15:29,565 - INFO - Processed 3100000 reads so far
2011-05-20 07:15:39,866 - INFO - Processed 3200000 reads so far
2011-05-20 07:15:44,377 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:62990094-83010094
2011-05-20 07:15:51,056 - INFO - Processed 3300000 reads so far
2011-05-20 07:16:01,052 - INFO - Processed 3400000 reads so far
2011-05-20 07:16:13,144 - INFO - Processed 3500000 reads so far
2011-05-20 07:16:23,283 - INFO - Processed 3600000 reads so far
2011-05-20 07:16:35,342 - INFO - Processed 3700000 reads so far
2011-05-20 07:16:44,609 - INFO - Processed 3800000 reads so far
2011-05-20 07:16:53,791 - INFO - Processed 3900000 reads so far
2011-05-20 07:17:06,081 - INFO - Processed 4000000 reads so far
2011-05-20 07:17:18,636 - INFO - Processed 4100000 reads so far
2011-05-20 07:17:31,731 - INFO - Processed 4200000 reads so far
2011-05-20 07:17:41,053 - INFO - Processed 4300000 reads so far
2011-05-20 07:17:42,454 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:82990097-103010097
2011-05-20 07:17:48,599 - INFO - Processed 4400000 reads so far
2011-05-20 07:17:58,637 - INFO - Processed 4500000 reads so far
2011-05-20 07:18:08,908 - INFO - Processed 4600000 reads so far
2011-05-20 07:18:21,342 - INFO - Processed 4700000 reads so far
2011-05-20 07:18:32,159 - INFO - Processed 4800000 reads so far
2011-05-20 07:18:43,218 - INFO - Processed 4900000 reads so far
2011-05-20 07:18:52,939 - INFO - Processed 5000000 reads so far
2011-05-20 07:19:06,803 - INFO - Processed 5100000 reads so far
2011-05-20 07:19:19,218 - INFO - Processed 5200000 reads so far
2011-05-20 07:19:27,684 - INFO - Processed 5300000 reads so far
2011-05-20 07:19:37,543 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:102990112-123010112
2011-05-20 07:19:38,968 - INFO - Processed 5400000 reads so far
2011-05-20 07:19:51,314 - INFO - Processed 5500000 reads so far
2011-05-20 07:20:02,519 - INFO - Processed 5600000 reads so far
2011-05-20 07:20:13,136 - INFO - Processed 5700000 reads so far
2011-05-20 07:20:22,607 - INFO - Processed 5800000 reads so far
2011-05-20 07:20:33,200 - INFO - Processed 5900000 reads so far
2011-05-20 07:20:44,086 - INFO - Processed 6000000 reads so far
2011-05-20 07:20:53,979 - INFO - Processed 6100000 reads so far
2011-05-20 07:21:05,164 - INFO - Processed 6200000 reads so far
2011-05-20 07:21:14,991 - INFO - Processed 6300000 reads so far
2011-05-20 07:21:24,355 - INFO - Processed 6400000 reads so far
2011-05-20 07:21:26,083 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:122990123-143010123
2011-05-20 07:21:31,317 - INFO - Processed 6500000 reads so far
2011-05-20 07:21:42,048 - INFO - Processed 6600000 reads so far
2011-05-20 07:21:54,951 - INFO - Processed 6700000 reads so far
2011-05-20 07:22:07,947 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:2990003-23010003
2011-05-20 07:22:08,596 - INFO - Processed 6800000 reads so far
2011-05-20 07:22:19,223 - INFO - Processed 6900000 reads so far
2011-05-20 07:22:27,480 - INFO - Processed 7000000 reads so far
2011-05-20 07:22:38,313 - INFO - Processed 7100000 reads so far
2011-05-20 07:22:47,705 - INFO - Processed 7200000 reads so far
2011-05-20 07:22:57,149 - INFO - Processed 7300000 reads so far
2011-05-20 07:23:07,971 - INFO - Processed 7400000 reads so far
2011-05-20 07:23:20,723 - INFO - Processed 7500000 reads so far
2011-05-20 07:23:32,969 - INFO - Processed 7600000 reads so far
2011-05-20 07:23:42,077 - INFO - Processed 7700000 reads so far
2011-05-20 07:23:51,536 - INFO - Processed 7800000 reads so far
2011-05-20 07:24:02,477 - INFO - Processed 7900000 reads so far
2011-05-20 07:24:11,279 - INFO - Processed 8000000 reads so far
2011-05-20 07:24:19,937 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:22990036-43010036
2011-05-20 07:24:21,665 - INFO - Processed 8100000 reads so far
2011-05-20 07:24:30,414 - INFO - Processed 8200000 reads so far
2011-05-20 07:24:39,344 - INFO - Processed 8300000 reads so far
2011-05-20 07:24:51,116 - INFO - Processed 8400000 reads so far
2011-05-20 07:25:03,317 - INFO - Processed 8500000 reads so far
2011-05-20 07:25:13,254 - INFO - Processed 8600000 reads so far
2011-05-20 07:25:22,261 - INFO - Processed 8700000 reads so far
2011-05-20 07:25:31,807 - INFO - Processed 8800000 reads so far
2011-05-20 07:25:43,526 - INFO - Processed 8900000 reads so far
2011-05-20 07:25:54,498 - INFO - Processed 9000000 reads so far
2011-05-20 07:26:05,377 - INFO - Processed 9100000 reads so far
2011-05-20 07:26:11,043 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:42990084-63010084
2011-05-20 07:26:16,569 - INFO - Processed 9200000 reads so far
2011-05-20 07:26:26,290 - INFO - Processed 9300000 reads so far
2011-05-20 07:26:37,003 - INFO - Processed 9400000 reads so far
2011-05-20 07:26:46,892 - INFO - Processed 9500000 reads so far
2011-05-20 07:26:56,831 - INFO - Processed 9600000 reads so far
2011-05-20 07:27:06,814 - INFO - Processed 9700000 reads so far
2011-05-20 07:27:16,128 - INFO - Processed 9800000 reads so far
2011-05-20 07:27:27,093 - INFO - Processed 9900000 reads so far
2011-05-20 07:27:37,923 - INFO - Processed 10000000 reads so far
2011-05-20 07:27:47,787 - INFO - Processed 10100000 reads so far
2011-05-20 07:27:58,467 - INFO - Processed 10200000 reads so far
2011-05-20 07:28:04,309 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:62990085-83010085
2011-05-20 07:28:12,515 - INFO - Processed 10300000 reads so far
2011-05-20 07:28:21,498 - INFO - Processed 10400000 reads so far
2011-05-20 07:28:31,820 - INFO - Processed 10500000 reads so far
2011-05-20 07:28:42,047 - INFO - Processed 10600000 reads so far
2011-05-20 07:28:51,943 - INFO - Processed 10700000 reads so far
2011-05-20 07:29:01,931 - INFO - Processed 10800000 reads so far
2011-05-20 07:29:12,158 - INFO - Processed 10900000 reads so far
2011-05-20 07:29:21,377 - INFO - Processed 11000000 reads so far
2011-05-20 07:29:32,243 - INFO - Processed 11100000 reads so far
2011-05-20 07:29:43,977 - INFO - Processed 11200000 reads so far
2011-05-20 07:29:54,523 - INFO - Processed 11300000 reads so far
2011-05-20 07:29:55,386 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:82990105-103010105
2011-05-20 07:30:04,842 - INFO - Processed 11400000 reads so far
2011-05-20 07:30:16,313 - INFO - Processed 11500000 reads so far
2011-05-20 07:30:25,168 - INFO - Processed 11600000 reads so far
2011-05-20 07:30:35,422 - INFO - Processed 11700000 reads so far
2011-05-20 07:30:44,969 - INFO - Processed 11800000 reads so far
2011-05-20 07:30:56,248 - INFO - Processed 11900000 reads so far
2011-05-20 07:31:04,420 - INFO - Processed 12000000 reads so far
2011-05-20 07:31:14,693 - INFO - Processed 12100000 reads so far
2011-05-20 07:31:33,842 - INFO - Processed 12200000 reads so far
2011-05-20 07:31:42,395 - INFO - Processed 12300000 reads so far
2011-05-20 07:31:47,795 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:102990111-123010111
2011-05-20 07:31:54,050 - INFO - Processed 12400000 reads so far
2011-05-20 07:32:01,930 - INFO - Processed 12500000 reads so far
2011-05-20 07:32:14,005 - INFO - Processed 12600000 reads so far
2011-05-20 07:32:24,500 - INFO - Processed 12700000 reads so far
2011-05-20 07:32:35,771 - INFO - Processed 12800000 reads so far
2011-05-20 07:32:45,086 - INFO - Processed 12900000 reads so far
2011-05-20 07:32:55,926 - INFO - Processed 13000000 reads so far
2011-05-20 07:33:06,568 - INFO - Processed 13100000 reads so far
2011-05-20 07:33:14,964 - INFO - Processed 13200000 reads so far
2011-05-20 07:33:25,820 - INFO - Processed 13300000 reads so far
2011-05-20 07:33:33,973 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:2990003-23010003
2011-05-20 07:33:35,529 - INFO - Processed 13400000 reads so far
2011-05-20 07:33:43,166 - INFO - Processed 13500000 reads so far
2011-05-20 07:33:53,211 - INFO - Processed 13600000 reads so far
2011-05-20 07:34:04,301 - INFO - Processed 13700000 reads so far
2011-05-20 07:34:15,476 - INFO - Processed 13800000 reads so far
2011-05-20 07:34:25,856 - INFO - Processed 13900000 reads so far
2011-05-20 07:34:38,217 - INFO - Processed 14000000 reads so far
2011-05-20 07:34:50,633 - INFO - Processed 14100000 reads so far
2011-05-20 07:34:59,456 - INFO - Processed 14200000 reads so far
2011-05-20 07:35:16,734 - INFO - Processed 14300000 reads so far
2011-05-20 07:35:30,231 - INFO - Processed 14400000 reads so far
2011-05-20 07:35:43,795 - INFO - Processed 14500000 reads so far
2011-05-20 07:35:54,193 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:22990201-43010201
2011-05-20 07:35:55,740 - INFO - Processed 14600000 reads so far
2011-05-20 07:36:05,262 - INFO - Processed 14700000 reads so far
2011-05-20 07:36:13,555 - INFO - Processed 14800000 reads so far
2011-05-20 07:36:24,634 - INFO - Processed 14900000 reads so far
2011-05-20 07:36:33,777 - INFO - Processed 15000000 reads so far
2011-05-20 07:36:45,075 - INFO - Processed 15100000 reads so far
2011-05-20 07:36:56,386 - INFO - Processed 15200000 reads so far
2011-05-20 07:37:05,288 - INFO - Processed 15300000 reads so far
2011-05-20 07:37:15,227 - INFO - Processed 15400000 reads so far
2011-05-20 07:37:26,391 - INFO - Processed 15500000 reads so far
2011-05-20 07:37:32,450 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:42990224-63010224
2011-05-20 07:37:34,322 - INFO - Processed 15600000 reads so far
2011-05-20 07:37:42,446 - INFO - Processed 15700000 reads so far
2011-05-20 07:37:53,051 - INFO - Processed 15800000 reads so far
2011-05-20 07:38:03,732 - INFO - Processed 15900000 reads so far
2011-05-20 07:38:15,089 - INFO - Processed 16000000 reads so far
2011-05-20 07:38:28,236 - INFO - Processed 16100000 reads so far
2011-05-20 07:38:42,318 - INFO - Processed 16200000 reads so far
2011-05-20 07:38:52,001 - INFO - Processed 16300000 reads so far
2011-05-20 07:39:05,839 - INFO - Processed 16400000 reads so far
2011-05-20 07:39:16,105 - INFO - Processed 16500000 reads so far
2011-05-20 07:39:25,447 - INFO - Processed 16600000 reads so far
2011-05-20 07:39:28,342 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:62990235-83010235
2011-05-20 07:39:35,340 - INFO - Processed 16700000 reads so far
2011-05-20 07:39:44,472 - INFO - Processed 16800000 reads so far
2011-05-20 07:39:57,125 - INFO - Processed 16900000 reads so far
2011-05-20 07:40:06,575 - INFO - Processed 17000000 reads so far
2011-05-20 07:40:17,970 - INFO - Processed 17100000 reads so far
2011-05-20 07:40:26,746 - INFO - Processed 17200000 reads so far
2011-05-20 07:40:37,863 - INFO - Processed 17300000 reads so far
2011-05-20 07:40:49,923 - INFO - Processed 17400000 reads so far
2011-05-20 07:41:00,690 - INFO - Processed 17500000 reads so far
2011-05-20 07:41:10,721 - INFO - Processed 17600000 reads so far
2011-05-20 07:41:20,430 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:82990246-103010246
2011-05-20 07:41:22,240 - INFO - Processed 17700000 reads so far
2011-05-20 07:41:31,439 - INFO - Processed 17800000 reads so far
2011-05-20 07:41:42,539 - INFO - Processed 17900000 reads so far
2011-05-20 07:41:52,812 - INFO - Processed 18000000 reads so far
2011-05-20 07:42:03,519 - INFO - Processed 18100000 reads so far
2011-05-20 07:42:11,459 - INFO - Processed 18200000 reads so far
2011-05-20 07:42:21,847 - INFO - Processed 18300000 reads so far
2011-05-20 07:42:31,864 - INFO - Processed 18400000 reads so far
2011-05-20 07:42:41,548 - INFO - Processed 18500000 reads so far
2011-05-20 07:42:52,216 - INFO - Processed 18600000 reads so far
2011-05-20 07:43:03,595 - INFO - Processed 18700000 reads so far
2011-05-20 07:43:10,151 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:102990260-123010260
2011-05-20 07:43:12,260 - INFO - Processed 18800000 reads so far
2011-05-20 07:43:22,627 - INFO - Processed 18900000 reads so far
2011-05-20 07:43:33,412 - INFO - Processed 19000000 reads so far
2011-05-20 07:43:42,758 - INFO - Processed 19100000 reads so far
2011-05-20 07:43:53,146 - INFO - Processed 19200000 reads so far
2011-05-20 07:44:03,090 - INFO - Processed 19300000 reads so far
2011-05-20 07:44:14,688 - INFO - Processed 19400000 reads so far
2011-05-20 07:44:24,520 - INFO - Processed 19500000 reads so far
2011-05-20 07:44:32,627 - INFO - Processed 19600000 reads so far
2011-05-20 07:44:43,054 - INFO - Processed 19700000 reads so far
2011-05-20 07:44:52,068 - INFO - Processed 19800000 reads so far
2011-05-20 07:44:56,683 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:2989995-23009995
2011-05-20 07:45:02,358 - INFO - Processed 19900000 reads so far
2011-05-20 07:45:11,955 - INFO - Processed 20000000 reads so far
2011-05-20 07:45:22,212 - INFO - Processed 20100000 reads so far
2011-05-20 07:45:31,628 - INFO - Processed 20200000 reads so far
2011-05-20 07:45:39,501 - INFO - Processed 20300000 reads so far
2011-05-20 07:45:51,832 - INFO - Processed 20400000 reads so far
2011-05-20 07:46:02,772 - INFO - Processed 20500000 reads so far
2011-05-20 07:46:12,617 - INFO - Processed 20600000 reads so far
2011-05-20 07:46:24,966 - INFO - Processed 20700000 reads so far
2011-05-20 07:46:37,042 - INFO - Processed 20800000 reads so far
2011-05-20 07:46:47,469 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:22990055-43010055
2011-05-20 07:46:48,306 - INFO - Processed 20900000 reads so far
2011-05-20 07:46:58,659 - INFO - Processed 21000000 reads so far
2011-05-20 07:47:07,977 - INFO - Processed 21100000 reads so far
2011-05-20 07:47:16,024 - INFO - Processed 21200000 reads so far
2011-05-20 07:47:26,656 - INFO - Processed 21300000 reads so far
2011-05-20 07:47:36,883 - INFO - Processed 21400000 reads so far
2011-05-20 07:47:45,736 - INFO - Processed 21500000 reads so far
2011-05-20 07:47:56,098 - INFO - Processed 21600000 reads so far
2011-05-20 07:48:08,690 - INFO - Processed 21700000 reads so far
2011-05-20 07:48:20,075 - INFO - Processed 21800000 reads so far
2011-05-20 07:48:31,345 - INFO - Processed 21900000 reads so far
2011-05-20 07:48:39,065 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:42990064-63010064
2011-05-20 07:48:41,821 - INFO - Processed 22000000 reads so far
2011-05-20 07:48:50,364 - INFO - Processed 22100000 reads so far
2011-05-20 07:49:00,243 - INFO - Processed 22200000 reads so far
2011-05-20 07:49:10,834 - INFO - Processed 22300000 reads so far
2011-05-20 07:49:20,268 - INFO - Processed 22400000 reads so far
2011-05-20 07:49:30,384 - INFO - Processed 22500000 reads so far
2011-05-20 07:49:41,277 - INFO - Processed 22600000 reads so far
2011-05-20 07:49:52,075 - INFO - Processed 22700000 reads so far
2011-05-20 07:50:00,357 - INFO - Processed 22800000 reads so far
2011-05-20 07:50:08,532 - INFO - Processed 22900000 reads so far
2011-05-20 07:50:20,092 - INFO - Processed 23000000 reads so far
2011-05-20 07:50:25,518 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:62990120-83010120
2011-05-20 07:50:28,447 - INFO - Processed 23100000 reads so far
2011-05-20 07:50:37,100 - INFO - Processed 23200000 reads so far
2011-05-20 07:50:48,647 - INFO - Processed 23300000 reads so far
2011-05-20 07:50:58,621 - INFO - Processed 23400000 reads so far
2011-05-20 07:51:10,269 - INFO - Processed 23500000 reads so far
2011-05-20 07:51:20,360 - INFO - Processed 23600000 reads so far
2011-05-20 07:51:28,555 - INFO - Processed 23700000 reads so far
2011-05-20 07:51:39,952 - INFO - Processed 23800000 reads so far
2011-05-20 07:51:51,143 - INFO - Processed 23900000 reads so far
2011-05-20 07:52:02,555 - INFO - Processed 24000000 reads so far
2011-05-20 07:52:13,220 - INFO - Processed 24100000 reads so far
2011-05-20 07:52:15,876 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:82990121-103010121
2011-05-20 07:52:22,906 - INFO - Processed 24200000 reads so far
2011-05-20 07:52:33,725 - INFO - Processed 24300000 reads so far
2011-05-20 07:52:44,274 - INFO - Processed 24400000 reads so far
2011-05-20 07:52:54,944 - INFO - Processed 24500000 reads so far
2011-05-20 07:53:05,913 - INFO - Processed 24600000 reads so far
2011-05-20 07:53:17,602 - INFO - Processed 24700000 reads so far
2011-05-20 07:53:27,359 - INFO - Processed 24800000 reads so far
2011-05-20 07:53:37,810 - INFO - Processed 24900000 reads so far
2011-05-20 07:53:49,307 - INFO - Processed 25000000 reads so far
2011-05-20 07:53:58,021 - INFO - Processed 25100000 reads so far
2011-05-20 07:54:03,030 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:102990128-123010128
2011-05-20 07:54:07,253 - INFO - Processed 25200000 reads so far
2011-05-20 07:54:15,754 - INFO - Processed 25300000 reads so far
2011-05-20 07:54:25,262 - INFO - Processed 25400000 reads so far
2011-05-20 07:54:33,111 - INFO - Processed 25500000 reads so far
2011-05-20 07:54:41,745 - INFO - Processed 25600000 reads so far
2011-05-20 07:54:50,158 - INFO - Processed 25700000 reads so far
2011-05-20 07:55:01,329 - INFO - Processed 25800000 reads so far
2011-05-20 07:55:09,695 - INFO - Processed 25900000 reads so far
2011-05-20 07:55:18,616 - INFO - Processed 26000000 reads so far
2011-05-20 07:55:25,515 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13_random:0-20010000
2011-05-20 07:55:26,317 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:2990043-23010043
2011-05-20 07:55:27,709 - INFO - Processed 26100000 reads so far
2011-05-20 07:55:37,366 - INFO - Processed 26200000 reads so far
2011-05-20 07:55:45,175 - INFO - Processed 26300000 reads so far
2011-05-20 07:55:57,044 - INFO - Processed 26400000 reads so far
2011-05-20 07:56:08,724 - INFO - Processed 26500000 reads so far
2011-05-20 07:56:19,860 - INFO - Processed 26600000 reads so far
2011-05-20 07:56:31,013 - INFO - Processed 26700000 reads so far
2011-05-20 07:56:43,694 - INFO - Processed 26800000 reads so far
2011-05-20 07:56:55,728 - INFO - Processed 26900000 reads so far
2011-05-20 07:57:06,915 - INFO - Processed 27000000 reads so far
2011-05-20 07:57:17,933 - INFO - Processed 27100000 reads so far
2011-05-20 07:57:29,363 - INFO - Processed 27200000 reads so far
2011-05-20 07:57:31,749 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:22990059-43010059
2011-05-20 07:57:40,739 - INFO - Processed 27300000 reads so far
2011-05-20 07:57:52,310 - INFO - Processed 27400000 reads so far
2011-05-20 07:58:03,497 - INFO - Processed 27500000 reads so far
2011-05-20 07:58:15,208 - INFO - Processed 27600000 reads so far
2011-05-20 07:58:26,664 - INFO - Processed 27700000 reads so far
2011-05-20 07:58:40,195 - INFO - Processed 27800000 reads so far
2011-05-20 07:58:52,069 - INFO - Processed 27900000 reads so far
2011-05-20 07:59:03,225 - INFO - Processed 28000000 reads so far
2011-05-20 07:59:15,886 - INFO - Processed 28100000 reads so far
2011-05-20 07:59:27,932 - INFO - Processed 28200000 reads so far
2011-05-20 07:59:38,796 - INFO - Processed 28300000 reads so far
2011-05-20 07:59:40,272 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:42990119-63010119
2011-05-20 07:59:49,964 - INFO - Processed 28400000 reads so far
2011-05-20 08:00:01,248 - INFO - Processed 28500000 reads so far
2011-05-20 08:00:12,668 - INFO - Processed 28600000 reads so far
2011-05-20 08:00:24,942 - INFO - Processed 28700000 reads so far
2011-05-20 08:00:36,598 - INFO - Processed 28800000 reads so far
2011-05-20 08:00:48,053 - INFO - Processed 28900000 reads so far
2011-05-20 08:01:00,817 - INFO - Processed 29000000 reads so far
2011-05-20 08:01:12,585 - INFO - Processed 29100000 reads so far
2011-05-20 08:01:24,358 - INFO - Processed 29200000 reads so far
2011-05-20 08:01:37,878 - INFO - Processed 29300000 reads so far
2011-05-20 08:01:50,194 - INFO - Processed 29400000 reads so far
2011-05-20 08:01:51,959 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:62990129-83010129
2011-05-20 08:02:01,614 - INFO - Processed 29500000 reads so far
2011-05-20 08:02:12,917 - INFO - Processed 29600000 reads so far
2011-05-20 08:02:25,074 - INFO - Processed 29700000 reads so far
2011-05-20 08:02:36,460 - INFO - Processed 29800000 reads so far
2011-05-20 08:02:50,714 - INFO - Processed 29900000 reads so far
2011-05-20 08:03:01,931 - INFO - Processed 30000000 reads so far
2011-05-20 08:03:13,350 - INFO - Processed 30100000 reads so far
2011-05-20 08:03:26,936 - INFO - Processed 30200000 reads so far
2011-05-20 08:03:40,052 - INFO - Processed 30300000 reads so far
2011-05-20 08:03:47,814 - INFO - Processed 30400000 reads so far
2011-05-20 08:03:54,651 - INFO - Processed 30500000 reads so far
2011-05-20 08:03:54,672 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:82990139-103010139
2011-05-20 08:04:06,310 - INFO - Processed 30600000 reads so far
2011-05-20 08:04:16,027 - INFO - Processed 30700000 reads so far
2011-05-20 08:04:23,575 - INFO - Processed 30800000 reads so far
2011-05-20 08:04:30,537 - INFO - Processed 30900000 reads so far
2011-05-20 08:04:39,341 - INFO - Processed 31000000 reads so far
2011-05-20 08:04:46,907 - INFO - Processed 31100000 reads so far
2011-05-20 08:04:54,027 - INFO - Processed 31200000 reads so far
2011-05-20 08:05:01,665 - INFO - Processed 31300000 reads so far
2011-05-20 08:05:11,553 - INFO - Processed 31400000 reads so far
2011-05-20 08:05:23,325 - INFO - Processed 31500000 reads so far
2011-05-20 08:05:26,268 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:102990142-123010142
2011-05-20 08:05:36,116 - INFO - Processed 31600000 reads so far
2011-05-20 08:05:47,912 - INFO - Processed 31700000 reads so far
2011-05-20 08:05:59,135 - INFO - Processed 31800000 reads so far
2011-05-20 08:06:10,884 - INFO - Processed 31900000 reads so far
2011-05-20 08:06:22,641 - INFO - Processed 32000000 reads so far
2011-05-20 08:06:34,061 - INFO - Processed 32100000 reads so far
2011-05-20 08:06:45,509 - INFO - Processed 32200000 reads so far
2011-05-20 08:06:56,683 - INFO - Processed 32300000 reads so far
2011-05-20 08:07:09,660 - INFO - Processed 32400000 reads so far
2011-05-20 08:07:20,878 - INFO - Processed 32500000 reads so far
2011-05-20 08:07:27,337 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:122990144-143010144
2011-05-20 08:07:32,293 - INFO - Processed 32600000 reads so far
2011-05-20 08:07:40,434 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:2990035-23010035
2011-05-20 08:07:43,769 - INFO - Processed 32700000 reads so far
2011-05-20 08:07:55,215 - INFO - Processed 32800000 reads so far
2011-05-20 08:08:07,300 - INFO - Processed 32900000 reads so far
2011-05-20 08:08:18,691 - INFO - Processed 33000000 reads so far
2011-05-20 08:08:30,355 - INFO - Processed 33100000 reads so far
2011-05-20 08:08:41,688 - INFO - Processed 33200000 reads so far
2011-05-20 08:08:52,919 - INFO - Processed 33300000 reads so far
2011-05-20 08:09:04,023 - INFO - Processed 33400000 reads so far
2011-05-20 08:09:16,441 - INFO - Processed 33500000 reads so far
2011-05-20 08:09:31,218 - INFO - Processed 33600000 reads so far
2011-05-20 08:09:45,518 - INFO - Processed 33700000 reads so far
2011-05-20 08:09:47,733 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:22990036-43010036
2011-05-20 08:10:01,673 - INFO - Processed 33800000 reads so far
2011-05-20 08:10:13,806 - INFO - Processed 33900000 reads so far
2011-05-20 08:10:25,384 - INFO - Processed 34000000 reads so far
2011-05-20 08:10:36,192 - INFO - Processed 34100000 reads so far
2011-05-20 08:10:46,252 - INFO - Processed 34200000 reads so far
2011-05-20 08:10:58,809 - INFO - Processed 34300000 reads so far
2011-05-20 08:11:09,325 - INFO - Processed 34400000 reads so far
2011-05-20 08:11:17,124 - INFO - Processed 34500000 reads so far
2011-05-20 08:11:30,132 - INFO - Processed 34600000 reads so far
2011-05-20 08:11:41,431 - INFO - Processed 34700000 reads so far
2011-05-20 08:11:50,768 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:42990044-63010044
2011-05-20 08:11:51,365 - INFO - Processed 34800000 reads so far
2011-05-20 08:12:01,920 - INFO - Processed 34900000 reads so far
2011-05-20 08:12:11,028 - INFO - Processed 35000000 reads so far
2011-05-20 08:12:21,017 - INFO - Processed 35100000 reads so far
2011-05-20 08:12:28,440 - INFO - Processed 35200000 reads so far
2011-05-20 08:12:36,210 - INFO - Processed 35300000 reads so far
2011-05-20 08:12:47,476 - INFO - Processed 35400000 reads so far
2011-05-20 08:12:58,954 - INFO - Processed 35500000 reads so far
2011-05-20 08:13:07,047 - INFO - Processed 35600000 reads so far
2011-05-20 08:13:17,869 - INFO - Processed 35700000 reads so far
2011-05-20 08:13:29,002 - INFO - Processed 35800000 reads so far
2011-05-20 08:13:35,027 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:62990052-83010052
2011-05-20 08:13:40,344 - INFO - Processed 35900000 reads so far
2011-05-20 08:13:49,470 - INFO - Processed 36000000 reads so far
2011-05-20 08:14:00,919 - INFO - Processed 36100000 reads so far
2011-05-20 08:14:11,774 - INFO - Processed 36200000 reads so far
2011-05-20 08:14:20,958 - INFO - Processed 36300000 reads so far
2011-05-20 08:14:30,416 - INFO - Processed 36400000 reads so far
2011-05-20 08:14:38,655 - INFO - Processed 36500000 reads so far
2011-05-20 08:14:45,305 - INFO - Processed 36600000 reads so far
2011-05-20 08:14:56,173 - INFO - Processed 36700000 reads so far
2011-05-20 08:15:07,776 - INFO - Processed 36800000 reads so far
2011-05-20 08:15:18,254 - INFO - Processed 36900000 reads so far
2011-05-20 08:15:28,279 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:82990064-103010064
2011-05-20 08:15:29,877 - INFO - Processed 37000000 reads so far
2011-05-20 08:15:40,584 - INFO - Processed 37100000 reads so far
2011-05-20 08:15:50,214 - INFO - Processed 37200000 reads so far
2011-05-20 08:16:01,136 - INFO - Processed 37300000 reads so far
2011-05-20 08:16:09,574 - INFO - Processed 37400000 reads so far
2011-05-20 08:16:20,190 - INFO - Processed 37500000 reads so far
2011-05-20 08:16:36,871 - INFO - Processed 37600000 reads so far
2011-05-20 08:16:48,603 - INFO - Processed 37700000 reads so far
2011-05-20 08:16:58,726 - INFO - Processed 37800000 reads so far
2011-05-20 08:17:08,839 - INFO - Processed 37900000 reads so far
2011-05-20 08:17:21,213 - INFO - Processed 38000000 reads so far
2011-05-20 08:17:30,105 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:102990083-123010083
2011-05-20 08:17:33,740 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:2990016-23010016
2011-05-20 08:17:34,470 - INFO - Processed 38100000 reads so far
2011-05-20 08:17:44,851 - INFO - Processed 38200000 reads so far
2011-05-20 08:17:54,078 - INFO - Processed 38300000 reads so far
2011-05-20 08:18:05,244 - INFO - Processed 38400000 reads so far
2011-05-20 08:18:15,642 - INFO - Processed 38500000 reads so far
2011-05-20 08:18:24,664 - INFO - Processed 38600000 reads so far
2011-05-20 08:18:35,642 - INFO - Processed 38700000 reads so far
2011-05-20 08:18:42,600 - INFO - Processed 38800000 reads so far
2011-05-20 08:18:52,213 - INFO - Processed 38900000 reads so far
2011-05-20 08:19:03,248 - INFO - Processed 39000000 reads so far
2011-05-20 08:19:11,863 - INFO - Processed 39100000 reads so far
2011-05-20 08:19:19,950 - INFO - Processed 39200000 reads so far
2011-05-20 08:19:22,166 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:22990027-43010027
2011-05-20 08:19:30,454 - INFO - Processed 39300000 reads so far
2011-05-20 08:19:40,959 - INFO - Processed 39400000 reads so far
2011-05-20 08:19:51,593 - INFO - Processed 39500000 reads so far
2011-05-20 08:20:01,627 - INFO - Processed 39600000 reads so far
2011-05-20 08:20:12,626 - INFO - Processed 39700000 reads so far
2011-05-20 08:20:22,646 - INFO - Processed 39800000 reads so far
2011-05-20 08:20:29,647 - INFO - Processed 39900000 reads so far
2011-05-20 08:20:40,037 - INFO - Processed 40000000 reads so far
2011-05-20 08:20:49,877 - INFO - Processed 40100000 reads so far
2011-05-20 08:21:01,119 - INFO - Processed 40200000 reads so far
2011-05-20 08:21:09,523 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:42990045-63010045
2011-05-20 08:21:10,280 - INFO - Processed 40300000 reads so far
2011-05-20 08:21:20,181 - INFO - Processed 40400000 reads so far
2011-05-20 08:21:28,052 - INFO - Processed 40500000 reads so far
2011-05-20 08:21:38,916 - INFO - Processed 40600000 reads so far
2011-05-20 08:21:48,523 - INFO - Processed 40700000 reads so far
2011-05-20 08:21:58,390 - INFO - Processed 40800000 reads so far
2011-05-20 08:22:09,168 - INFO - Processed 40900000 reads so far
2011-05-20 08:22:18,709 - INFO - Processed 41000000 reads so far
2011-05-20 08:22:30,184 - INFO - Processed 41100000 reads so far
2011-05-20 08:22:40,744 - INFO - Processed 41200000 reads so far
2011-05-20 08:22:49,538 - INFO - Processed 41300000 reads so far
2011-05-20 08:22:52,798 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:62990116-83010116
2011-05-20 08:22:57,976 - INFO - Processed 41400000 reads so far
2011-05-20 08:23:09,408 - INFO - Processed 41500000 reads so far
2011-05-20 08:23:22,957 - INFO - Processed 41600000 reads so far
2011-05-20 08:23:33,580 - INFO - Processed 41700000 reads so far
2011-05-20 08:23:42,737 - INFO - Processed 41800000 reads so far
2011-05-20 08:23:53,566 - INFO - Processed 41900000 reads so far
2011-05-20 08:24:04,440 - INFO - Processed 42000000 reads so far
2011-05-20 08:24:12,278 - INFO - Processed 42100000 reads so far
2011-05-20 08:24:22,973 - INFO - Processed 42200000 reads so far
2011-05-20 08:24:33,751 - INFO - Processed 42300000 reads so far
2011-05-20 08:24:40,120 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:82990142-103010142
2011-05-20 08:24:42,497 - INFO - Processed 42400000 reads so far
2011-05-20 08:24:52,698 - INFO - Processed 42500000 reads so far
2011-05-20 08:25:06,524 - INFO - Processed 42600000 reads so far
2011-05-20 08:25:16,458 - INFO - Processed 42700000 reads so far
2011-05-20 08:25:26,376 - INFO - Processed 42800000 reads so far
2011-05-20 08:25:34,943 - INFO - Processed 42900000 reads so far
2011-05-20 08:25:46,315 - INFO - Processed 43000000 reads so far
2011-05-20 08:25:56,545 - INFO - Processed 43100000 reads so far
2011-05-20 08:26:05,945 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16_random:0-20010041
2011-05-20 08:26:05,980 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:2989988-23009988
2011-05-20 08:26:06,192 - INFO - Processed 43200000 reads so far
2011-05-20 08:26:16,976 - INFO - Processed 43300000 reads so far
2011-05-20 08:26:26,671 - INFO - Processed 43400000 reads so far
2011-05-20 08:26:37,129 - INFO - Processed 43500000 reads so far
2011-05-20 08:26:47,043 - INFO - Processed 43600000 reads so far
2011-05-20 08:26:56,506 - INFO - Processed 43700000 reads so far
2011-05-20 08:27:04,121 - INFO - Processed 43800000 reads so far
2011-05-20 08:27:14,504 - INFO - Processed 43900000 reads so far
2011-05-20 08:27:26,870 - INFO - Processed 44000000 reads so far
2011-05-20 08:27:38,240 - INFO - Processed 44100000 reads so far
2011-05-20 08:27:47,597 - INFO - Processed 44200000 reads so far
2011-05-20 08:27:57,735 - INFO - Processed 44300000 reads so far
2011-05-20 08:28:05,032 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:22990002-43010002
2011-05-20 08:28:09,281 - INFO - Processed 44400000 reads so far
2011-05-20 08:28:18,870 - INFO - Processed 44500000 reads so far
2011-05-20 08:28:29,818 - INFO - Processed 44600000 reads so far
2011-05-20 08:28:40,266 - INFO - Processed 44700000 reads so far
2011-05-20 08:28:51,316 - INFO - Processed 44800000 reads so far
2011-05-20 08:29:01,542 - INFO - Processed 44900000 reads so far
2011-05-20 08:29:12,257 - INFO - Processed 45000000 reads so far
2011-05-20 08:29:23,045 - INFO - Processed 45100000 reads so far
2011-05-20 08:29:33,259 - INFO - Processed 45200000 reads so far
2011-05-20 08:29:41,135 - INFO - Processed 45300000 reads so far
2011-05-20 08:29:50,620 - INFO - Processed 45400000 reads so far
2011-05-20 08:30:03,369 - INFO - Processed 45500000 reads so far
2011-05-20 08:30:07,617 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:42990040-63010040
2011-05-20 08:30:15,012 - INFO - Processed 45600000 reads so far
2011-05-20 08:30:24,127 - INFO - Processed 45700000 reads so far
2011-05-20 08:30:33,920 - INFO - Processed 45800000 reads so far
2011-05-20 08:30:43,718 - INFO - Processed 45900000 reads so far
2011-05-20 08:30:56,102 - INFO - Processed 46000000 reads so far
2011-05-20 08:31:06,061 - INFO - Processed 46100000 reads so far
2011-05-20 08:31:16,921 - INFO - Processed 46200000 reads so far
2011-05-20 08:31:29,888 - INFO - Processed 46300000 reads so far
2011-05-20 08:31:40,902 - INFO - Processed 46400000 reads so far
2011-05-20 08:31:52,984 - INFO - Processed 46500000 reads so far
2011-05-20 08:32:02,458 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:62990074-83010074
2011-05-20 08:32:03,639 - INFO - Processed 46600000 reads so far
2011-05-20 08:32:14,016 - INFO - Processed 46700000 reads so far
2011-05-20 08:32:22,341 - INFO - Processed 46800000 reads so far
2011-05-20 08:32:32,938 - INFO - Processed 46900000 reads so far
2011-05-20 08:32:44,728 - INFO - Processed 47000000 reads so far
2011-05-20 08:32:54,305 - INFO - Processed 47100000 reads so far
2011-05-20 08:33:06,998 - INFO - Processed 47200000 reads so far
2011-05-20 08:33:16,509 - INFO - Processed 47300000 reads so far
2011-05-20 08:33:27,564 - INFO - Processed 47400000 reads so far
2011-05-20 08:33:39,725 - INFO - Processed 47500000 reads so far
2011-05-20 08:33:48,943 - INFO - Processed 47600000 reads so far
2011-05-20 08:33:54,113 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:82990133-103010133
2011-05-20 08:33:58,170 - INFO - Processed 47700000 reads so far
2011-05-20 08:34:07,991 - INFO - Processed 47800000 reads so far
2011-05-20 08:34:18,297 - INFO - Processed 47900000 reads so far
2011-05-20 08:34:28,993 - INFO - Processed 48000000 reads so far
2011-05-20 08:34:39,480 - INFO - Processed 48100000 reads so far
2011-05-20 08:34:51,572 - INFO - Processed 48200000 reads so far
2011-05-20 08:35:02,875 - INFO - Processed 48300000 reads so far
2011-05-20 08:35:03,938 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17_random:0-20010053
2011-05-20 08:35:05,728 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:2989997-23009997
2011-05-20 08:35:14,490 - INFO - Processed 48400000 reads so far
2011-05-20 08:35:25,680 - INFO - Processed 48500000 reads so far
2011-05-20 08:35:38,216 - INFO - Processed 48600000 reads so far
2011-05-20 08:35:49,926 - INFO - Processed 48700000 reads so far
2011-05-20 08:36:02,227 - INFO - Processed 48800000 reads so far
2011-05-20 08:36:13,472 - INFO - Processed 48900000 reads so far
2011-05-20 08:36:21,372 - INFO - Processed 49000000 reads so far
2011-05-20 08:36:32,695 - INFO - Processed 49100000 reads so far
2011-05-20 08:36:43,882 - INFO - Processed 49200000 reads so far
2011-05-20 08:36:53,869 - INFO - Processed 49300000 reads so far
2011-05-20 08:37:05,056 - INFO - Processed 49400000 reads so far
2011-05-20 08:37:08,983 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:22990011-43010011
2011-05-20 08:37:14,813 - INFO - Processed 49500000 reads so far
2011-05-20 08:37:25,968 - INFO - Processed 49600000 reads so far
2011-05-20 08:37:35,478 - INFO - Processed 49700000 reads so far
2011-05-20 08:37:46,549 - INFO - Processed 49800000 reads so far
2011-05-20 08:37:57,864 - INFO - Processed 49900000 reads so far
2011-05-20 08:38:06,972 - INFO - Processed 50000000 reads so far
2011-05-20 08:38:18,620 - INFO - Processed 50100000 reads so far
2011-05-20 08:38:27,746 - INFO - Processed 50200000 reads so far
2011-05-20 08:38:37,358 - INFO - Processed 50300000 reads so far
2011-05-20 08:38:49,723 - INFO - Processed 50400000 reads so far
2011-05-20 08:38:57,561 - INFO - Processed 50500000 reads so far
2011-05-20 08:38:59,829 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:42990037-63010037
2011-05-20 08:39:07,055 - INFO - Processed 50600000 reads so far
2011-05-20 08:39:16,494 - INFO - Processed 50700000 reads so far
2011-05-20 08:39:28,665 - INFO - Processed 50800000 reads so far
2011-05-20 08:39:37,414 - INFO - Processed 50900000 reads so far
2011-05-20 08:39:46,358 - INFO - Processed 51000000 reads so far
2011-05-20 08:39:55,857 - INFO - Processed 51100000 reads so far
2011-05-20 08:40:07,667 - INFO - Processed 51200000 reads so far
2011-05-20 08:40:15,367 - INFO - Processed 51300000 reads so far
2011-05-20 08:40:26,594 - INFO - Processed 51400000 reads so far
2011-05-20 08:40:36,592 - INFO - Processed 51500000 reads so far
2011-05-20 08:40:46,767 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:62990088-83010088
2011-05-20 08:40:48,430 - INFO - Processed 51600000 reads so far
2011-05-20 08:40:57,515 - INFO - Processed 51700000 reads so far
2011-05-20 08:41:07,928 - INFO - Processed 51800000 reads so far
2011-05-20 08:41:18,976 - INFO - Processed 51900000 reads so far
2011-05-20 08:41:29,514 - INFO - Processed 52000000 reads so far
2011-05-20 08:41:38,580 - INFO - Processed 52100000 reads so far
2011-05-20 08:41:51,458 - INFO - Processed 52200000 reads so far
2011-05-20 08:42:00,455 - INFO - Processed 52300000 reads so far
2011-05-20 08:42:10,154 - INFO - Processed 52400000 reads so far
2011-05-20 08:42:20,280 - INFO - Processed 52500000 reads so far
2011-05-20 08:42:32,305 - INFO - Processed 52600000 reads so far
2011-05-20 08:42:39,783 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:82990094-103010094
2011-05-20 08:42:43,671 - INFO - Processed 52700000 reads so far
2011-05-20 08:42:54,054 - INFO - Processed 52800000 reads so far
2011-05-20 08:43:03,877 - INFO - Processed 52900000 reads so far
2011-05-20 08:43:16,115 - INFO - Processed 53000000 reads so far
2011-05-20 08:43:26,298 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:2990010-23010010
2011-05-20 08:43:27,344 - INFO - Processed 53100000 reads so far
2011-05-20 08:43:38,998 - INFO - Processed 53200000 reads so far
2011-05-20 08:43:50,917 - INFO - Processed 53300000 reads so far
2011-05-20 08:44:00,060 - INFO - Processed 53400000 reads so far
2011-05-20 08:44:18,245 - INFO - Processed 53500000 reads so far
2011-05-20 08:44:27,831 - INFO - Processed 53600000 reads so far
2011-05-20 08:44:37,686 - INFO - Processed 53700000 reads so far
2011-05-20 08:44:48,566 - INFO - Processed 53800000 reads so far
2011-05-20 08:44:58,172 - INFO - Processed 53900000 reads so far
2011-05-20 08:45:08,335 - INFO - Processed 54000000 reads so far
2011-05-20 08:45:16,519 - INFO - Processed 54100000 reads so far
2011-05-20 08:45:21,151 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:22990023-43010023
2011-05-20 08:45:24,773 - INFO - Processed 54200000 reads so far
2011-05-20 08:45:35,743 - INFO - Processed 54300000 reads so far
2011-05-20 08:45:47,604 - INFO - Processed 54400000 reads so far
2011-05-20 08:45:58,511 - INFO - Processed 54500000 reads so far
2011-05-20 08:46:08,551 - INFO - Processed 54600000 reads so far
2011-05-20 08:46:19,161 - INFO - Processed 54700000 reads so far
2011-05-20 08:46:31,336 - INFO - Processed 54800000 reads so far
2011-05-20 08:46:42,992 - INFO - Processed 54900000 reads so far
2011-05-20 08:46:54,159 - INFO - Processed 55000000 reads so far
2011-05-20 08:47:06,281 - INFO - Processed 55100000 reads so far
2011-05-20 08:47:13,310 - INFO - Processed 55200000 reads so far
2011-05-20 08:47:14,744 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:42990061-63010061
2011-05-20 08:47:23,997 - INFO - Processed 55300000 reads so far
2011-05-20 08:47:34,857 - INFO - Processed 55400000 reads so far
2011-05-20 08:47:46,203 - INFO - Processed 55500000 reads so far
2011-05-20 08:47:57,698 - INFO - Processed 55600000 reads so far
2011-05-20 08:48:08,397 - INFO - Processed 55700000 reads so far
2011-05-20 08:48:20,032 - INFO - Processed 55800000 reads so far
2011-05-20 08:48:31,540 - INFO - Processed 55900000 reads so far
2011-05-20 08:48:42,055 - INFO - Processed 56000000 reads so far
2011-05-20 08:48:53,682 - INFO - Processed 56100000 reads so far
2011-05-20 08:49:06,547 - INFO - Processed 56200000 reads so far
2011-05-20 08:49:08,320 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:2989980-23009980
2011-05-20 08:49:16,718 - INFO - Processed 56300000 reads so far
2011-05-20 08:49:26,438 - INFO - Processed 56400000 reads so far
2011-05-20 08:49:37,667 - INFO - Processed 56500000 reads so far
2011-05-20 08:49:47,502 - INFO - Processed 56600000 reads so far
2011-05-20 08:49:59,022 - INFO - Processed 56700000 reads so far
2011-05-20 08:50:10,405 - INFO - Processed 56800000 reads so far
2011-05-20 08:50:21,068 - INFO - Processed 56900000 reads so far
2011-05-20 08:50:34,366 - INFO - Processed 57000000 reads so far
2011-05-20 08:50:46,189 - INFO - Processed 57100000 reads so far
2011-05-20 08:50:57,495 - INFO - Processed 57200000 reads so far
2011-05-20 08:51:07,159 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:22990030-43010030
2011-05-20 08:51:08,759 - INFO - Processed 57300000 reads so far
2011-05-20 08:51:20,435 - INFO - Processed 57400000 reads so far
2011-05-20 08:51:31,589 - INFO - Processed 57500000 reads so far
2011-05-20 08:51:43,614 - INFO - Processed 57600000 reads so far
2011-05-20 08:51:54,896 - INFO - Processed 57700000 reads so far
2011-05-20 08:52:06,994 - INFO - Processed 57800000 reads so far
2011-05-20 08:52:18,451 - INFO - Processed 57900000 reads so far
2011-05-20 08:52:31,071 - INFO - Processed 58000000 reads so far
2011-05-20 08:52:42,632 - INFO - Processed 58100000 reads so far
2011-05-20 08:52:54,078 - INFO - Processed 58200000 reads so far
2011-05-20 08:53:05,550 - INFO - Processed 58300000 reads so far
2011-05-20 08:53:13,172 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:42990070-63010070
2011-05-20 08:53:17,058 - INFO - Processed 58400000 reads so far
2011-05-20 08:53:28,534 - INFO - Processed 58500000 reads so far
2011-05-20 08:53:39,923 - INFO - Processed 58600000 reads so far
2011-05-20 08:53:53,006 - INFO - Processed 58700000 reads so far
2011-05-20 08:54:04,490 - INFO - Processed 58800000 reads so far
2011-05-20 08:54:16,078 - INFO - Processed 58900000 reads so far
2011-05-20 08:54:27,673 - INFO - Processed 59000000 reads so far
2011-05-20 08:54:38,839 - INFO - Processed 59100000 reads so far
2011-05-20 08:54:50,729 - INFO - Processed 59200000 reads so far
2011-05-20 08:55:02,288 - INFO - Processed 59300000 reads so far
2011-05-20 08:55:13,993 - INFO - Processed 59400000 reads so far
2011-05-20 08:55:16,551 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:62990082-83010082
2011-05-20 08:55:24,602 - INFO - Processed 59500000 reads so far
2011-05-20 08:55:33,171 - INFO - Processed 59600000 reads so far
2011-05-20 08:55:44,727 - INFO - Processed 59700000 reads so far
2011-05-20 08:55:54,487 - INFO - Processed 59800000 reads so far
2011-05-20 08:56:04,048 - INFO - Processed 59900000 reads so far
2011-05-20 08:56:15,461 - INFO - Processed 60000000 reads so far
2011-05-20 08:56:24,978 - INFO - Processed 60100000 reads so far
2011-05-20 08:56:35,606 - INFO - Processed 60200000 reads so far
2011-05-20 08:56:46,671 - INFO - Processed 60300000 reads so far
2011-05-20 08:56:57,945 - INFO - Processed 60400000 reads so far
2011-05-20 08:57:07,798 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:82990098-103010098
2011-05-20 08:57:09,609 - INFO - Processed 60500000 reads so far
2011-05-20 08:57:21,072 - INFO - Processed 60600000 reads so far
2011-05-20 08:57:32,505 - INFO - Processed 60700000 reads so far
2011-05-20 08:57:45,057 - INFO - Processed 60800000 reads so far
2011-05-20 08:57:53,814 - INFO - Processed 60900000 reads so far
2011-05-20 08:58:03,997 - INFO - Processed 61000000 reads so far
2011-05-20 08:58:13,430 - INFO - Processed 61100000 reads so far
2011-05-20 08:58:21,943 - INFO - Processed 61200000 reads so far
2011-05-20 08:58:30,614 - INFO - Processed 61300000 reads so far
2011-05-20 08:58:39,820 - INFO - Processed 61400000 reads so far
2011-05-20 08:58:50,097 - INFO - Processed 61500000 reads so far
2011-05-20 08:58:56,728 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:102990135-123010135
2011-05-20 08:58:57,760 - INFO - Processed 61600000 reads so far
2011-05-20 08:59:04,638 - INFO - Processed 61700000 reads so far
2011-05-20 08:59:13,958 - INFO - Processed 61800000 reads so far
2011-05-20 08:59:24,914 - INFO - Processed 61900000 reads so far
2011-05-20 08:59:36,465 - INFO - Processed 62000000 reads so far
2011-05-20 08:59:47,342 - INFO - Processed 62100000 reads so far
2011-05-20 08:59:58,946 - INFO - Processed 62200000 reads so far
2011-05-20 09:00:11,569 - INFO - Processed 62300000 reads so far
2011-05-20 09:00:22,434 - INFO - Processed 62400000 reads so far
2011-05-20 09:00:31,734 - INFO - Processed 62500000 reads so far
2011-05-20 09:00:42,361 - INFO - Processed 62600000 reads so far
2011-05-20 09:00:48,662 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:122990150-143010150
2011-05-20 09:00:52,905 - INFO - Processed 62700000 reads so far
2011-05-20 09:01:01,867 - INFO - Processed 62800000 reads so far
2011-05-20 09:01:11,480 - INFO - Processed 62900000 reads so far
2011-05-20 09:01:21,618 - INFO - Processed 63000000 reads so far
2011-05-20 09:01:33,720 - INFO - Processed 63100000 reads so far
2011-05-20 09:01:43,170 - INFO - Processed 63200000 reads so far
2011-05-20 09:01:54,406 - INFO - Processed 63300000 reads so far
2011-05-20 09:02:03,060 - INFO - Processed 63400000 reads so far
2011-05-20 09:02:15,806 - INFO - Processed 63500000 reads so far
2011-05-20 09:02:24,431 - INFO - Processed 63600000 reads so far
2011-05-20 09:02:35,682 - INFO - Processed 63700000 reads so far
2011-05-20 09:02:40,413 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:142990173-163010173
2011-05-20 09:02:47,219 - INFO - Processed 63800000 reads so far
2011-05-20 09:02:58,630 - INFO - Processed 63900000 reads so far
2011-05-20 09:03:10,093 - INFO - Processed 64000000 reads so far
2011-05-20 09:03:22,804 - INFO - Processed 64100000 reads so far
2011-05-20 09:03:34,008 - INFO - Processed 64200000 reads so far
2011-05-20 09:03:45,389 - INFO - Processed 64300000 reads so far
2011-05-20 09:04:25,737 - INFO - Processed 64400000 reads so far
2011-05-20 09:04:37,418 - INFO - Processed 64500000 reads so far
2011-05-20 09:04:50,004 - INFO - Processed 64600000 reads so far
2011-05-20 09:05:01,498 - INFO - Processed 64700000 reads so far
2011-05-20 09:05:09,398 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:162990198-183010198
2011-05-20 09:05:11,835 - INFO - Processed 64800000 reads so far
2011-05-20 09:05:24,362 - INFO - Processed 64900000 reads so far
2011-05-20 09:05:34,153 - INFO - Processed 65000000 reads so far
2011-05-20 09:05:42,545 - INFO - Processed 65100000 reads so far
2011-05-20 09:05:51,387 - INFO - Processed 65200000 reads so far
2011-05-20 09:06:00,685 - INFO - Processed 65300000 reads so far
2011-05-20 09:06:09,675 - INFO - Processed 65400000 reads so far
2011-05-20 09:06:19,597 - INFO - Processed 65500000 reads so far
2011-05-20 09:06:29,751 - INFO - Processed 65600000 reads so far
2011-05-20 09:06:42,338 - INFO - Processed 65700000 reads so far
2011-05-20 09:06:55,326 - INFO - Processed 65800000 reads so far
2011-05-20 09:07:04,442 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:182990228-203010228
2011-05-20 09:07:08,558 - INFO - Processed 65900000 reads so far
2011-05-20 09:07:19,902 - INFO - Processed 66000000 reads so far
2011-05-20 09:07:31,368 - INFO - Processed 66100000 reads so far
2011-05-20 09:07:42,635 - INFO - Processed 66200000 reads so far
2011-05-20 09:07:53,890 - INFO - Processed 66300000 reads so far
2011-05-20 09:08:04,833 - INFO - Processed 66400000 reads so far
2011-05-20 09:08:15,945 - INFO - Processed 66500000 reads so far
2011-05-20 09:08:26,667 - INFO - Processed 66600000 reads so far
2011-05-20 09:08:29,226 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1_random:0-20010000
2011-05-20 09:08:36,541 - INFO - Processed 66700000 reads so far
2011-05-20 09:08:40,928 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:2990110-23010110
2011-05-20 09:08:47,215 - INFO - Processed 66800000 reads so far
2011-05-20 09:08:58,835 - INFO - Processed 66900000 reads so far
2011-05-20 09:09:09,696 - INFO - Processed 67000000 reads so far
2011-05-20 09:09:23,813 - INFO - Processed 67100000 reads so far
2011-05-20 09:09:37,930 - INFO - Processed 67200000 reads so far
2011-05-20 09:09:50,578 - INFO - Processed 67300000 reads so far
2011-05-20 09:10:01,935 - INFO - Processed 67400000 reads so far
2011-05-20 09:10:14,280 - INFO - Processed 67500000 reads so far
2011-05-20 09:10:25,831 - INFO - Processed 67600000 reads so far
2011-05-20 09:10:37,466 - INFO - Processed 67700000 reads so far
2011-05-20 09:10:48,698 - INFO - Processed 67800000 reads so far
2011-05-20 09:10:52,717 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:22990126-43010126
2011-05-20 09:11:00,891 - INFO - Processed 67900000 reads so far
2011-05-20 09:11:09,778 - INFO - Processed 68000000 reads so far
2011-05-20 09:11:18,648 - INFO - Processed 68100000 reads so far
2011-05-20 09:11:27,971 - INFO - Processed 68200000 reads so far
2011-05-20 09:11:37,461 - INFO - Processed 68300000 reads so far
2011-05-20 09:11:49,221 - INFO - Processed 68400000 reads so far
2011-05-20 09:12:00,105 - INFO - Processed 68500000 reads so far
2011-05-20 09:12:09,466 - INFO - Processed 68600000 reads so far
2011-05-20 09:12:20,106 - INFO - Processed 68700000 reads so far
2011-05-20 09:12:29,744 - INFO - Processed 68800000 reads so far
2011-05-20 09:12:37,854 - INFO - Processed 68900000 reads so far
2011-05-20 09:12:40,627 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:42990136-63010136
2011-05-20 09:12:45,739 - INFO - Processed 69000000 reads so far
2011-05-20 09:12:53,745 - INFO - Processed 69100000 reads so far
2011-05-20 09:13:01,902 - INFO - Processed 69200000 reads so far
2011-05-20 09:13:09,727 - INFO - Processed 69300000 reads so far
2011-05-20 09:13:20,195 - INFO - Processed 69400000 reads so far
2011-05-20 09:13:29,133 - INFO - Processed 69500000 reads so far
2011-05-20 09:13:37,695 - INFO - Processed 69600000 reads so far
2011-05-20 09:13:46,630 - INFO - Processed 69700000 reads so far
2011-05-20 09:13:54,975 - INFO - Processed 69800000 reads so far
2011-05-20 09:14:05,848 - INFO - Processed 69900000 reads so far
2011-05-20 09:14:16,027 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:62990145-83010145
2011-05-20 09:14:17,341 - INFO - Processed 70000000 reads so far
2011-05-20 09:14:28,645 - INFO - Processed 70100000 reads so far
2011-05-20 09:14:40,503 - INFO - Processed 70200000 reads so far
2011-05-20 09:14:51,949 - INFO - Processed 70300000 reads so far
2011-05-20 09:15:03,415 - INFO - Processed 70400000 reads so far
2011-05-20 09:15:14,797 - INFO - Processed 70500000 reads so far
2011-05-20 09:15:27,941 - INFO - Processed 70600000 reads so far
2011-05-20 09:15:39,207 - INFO - Processed 70700000 reads so far
2011-05-20 09:15:51,458 - INFO - Processed 70800000 reads so far
2011-05-20 09:16:03,059 - INFO - Processed 70900000 reads so far
2011-05-20 09:16:14,493 - INFO - Processed 71000000 reads so far
2011-05-20 09:16:18,106 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:82990148-103010148
2011-05-20 09:16:28,579 - INFO - Processed 71100000 reads so far
2011-05-20 09:16:40,124 - INFO - Processed 71200000 reads so far
2011-05-20 09:16:49,516 - INFO - Processed 71300000 reads so far
2011-05-20 09:16:58,530 - INFO - Processed 71400000 reads so far
2011-05-20 09:17:07,243 - INFO - Processed 71500000 reads so far
2011-05-20 09:17:19,101 - INFO - Processed 71600000 reads so far
2011-05-20 09:17:30,013 - INFO - Processed 71700000 reads so far
2011-05-20 09:17:41,079 - INFO - Processed 71800000 reads so far
2011-05-20 09:17:51,037 - INFO - Processed 71900000 reads so far
2011-05-20 09:18:00,355 - INFO - Processed 72000000 reads so far
2011-05-20 09:18:09,471 - INFO - Processed 72100000 reads so far
2011-05-20 09:18:20,124 - INFO - Processed 72200000 reads so far
2011-05-20 09:18:29,343 - INFO - Processed 72300000 reads so far
2011-05-20 09:18:37,918 - INFO - Processed 72400000 reads so far
2011-05-20 09:18:44,510 - INFO - Processed 72500000 reads so far
2011-05-20 09:18:54,539 - INFO - Processed 72600000 reads so far
2011-05-20 09:19:03,817 - INFO - Processed 72700000 reads so far
2011-05-20 09:19:13,555 - INFO - Processed 72800000 reads so far
2011-05-20 09:19:22,950 - INFO - Processed 72900000 reads so far
2011-05-20 09:19:32,381 - INFO - Processed 73000000 reads so far
2011-05-20 09:19:41,687 - INFO - Processed 73100000 reads so far
2011-05-20 09:19:50,983 - INFO - Processed 73200000 reads so far
2011-05-20 09:19:57,187 - INFO - Processed 73300000 reads so far
2011-05-20 09:20:05,966 - INFO - Processed 73400000 reads so far
2011-05-20 09:20:16,838 - INFO - Processed 73500000 reads so far
2011-05-20 09:20:25,192 - INFO - Processed 73600000 reads so far
2011-05-20 09:20:33,643 - INFO - Processed 73700000 reads so far
2011-05-20 09:20:42,488 - INFO - Processed 73800000 reads so far
2011-05-20 09:20:51,690 - INFO - Processed 73900000 reads so far
2011-05-20 09:21:02,532 - INFO - Processed 74000000 reads so far
2011-05-20 09:21:12,970 - INFO - Processed 74100000 reads so far
2011-05-20 09:21:22,529 - INFO - Processed 74200000 reads so far
2011-05-20 09:21:31,799 - INFO - Processed 74300000 reads so far
2011-05-20 09:21:41,660 - INFO - Processed 74400000 reads so far
2011-05-20 09:21:50,777 - INFO - Processed 74500000 reads so far
2011-05-20 09:21:59,994 - INFO - Processed 74600000 reads so far
2011-05-20 09:22:09,168 - INFO - Processed 74700000 reads so far
2011-05-20 09:22:20,046 - INFO - Processed 74800000 reads so far
2011-05-20 09:22:30,424 - INFO - Processed 74900000 reads so far
2011-05-20 09:22:39,572 - INFO - Processed 75000000 reads so far
2011-05-20 09:22:49,289 - INFO - Processed 75100000 reads so far
2011-05-20 09:22:57,240 - INFO - Processed 75200000 reads so far
2011-05-20 09:23:04,634 - INFO - Processed 75300000 reads so far
2011-05-20 09:23:11,454 - INFO - Processed 75400000 reads so far
2011-05-20 09:23:18,012 - INFO - Processed 75500000 reads so far
2011-05-20 09:23:27,414 - INFO - Processed 75600000 reads so far
2011-05-20 09:23:33,524 - INFO - Processed 75700000 reads so far
2011-05-20 09:23:42,640 - INFO - Processed 75800000 reads so far
2011-05-20 09:23:49,143 - INFO - Processed 75900000 reads so far
2011-05-20 09:23:56,282 - INFO - Processed 76000000 reads so far
2011-05-20 09:24:03,971 - INFO - Processed 76100000 reads so far
2011-05-20 09:24:10,847 - INFO - Processed 76200000 reads so far
2011-05-20 09:24:20,377 - INFO - Processed 76300000 reads so far
2011-05-20 09:24:29,528 - INFO - Processed 76400000 reads so far
2011-05-20 09:24:37,653 - INFO - Processed 76500000 reads so far
2011-05-20 09:24:46,763 - INFO - Processed 76600000 reads so far
2011-05-20 09:24:55,987 - INFO - Processed 76700000 reads so far
2011-05-20 09:25:04,973 - INFO - Processed 76800000 reads so far
2011-05-20 09:25:15,627 - INFO - Processed 76900000 reads so far
2011-05-20 09:25:24,083 - INFO - Processed 77000000 reads so far
2011-05-20 09:25:32,265 - INFO - Processed 77100000 reads so far
2011-05-20 09:25:41,910 - INFO - Processed 77200000 reads so far
2011-05-20 09:25:47,605 - INFO - Processed 77300000 reads so far
2011-05-20 09:25:56,837 - INFO - Processed 77400000 reads so far
2011-05-20 09:26:06,008 - INFO - Processed 77500000 reads so far
2011-05-20 09:26:13,681 - INFO - Processed 77600000 reads so far
2011-05-20 09:26:21,035 - INFO - Processed 77700000 reads so far
2011-05-20 09:26:29,790 - INFO - Processed 77800000 reads so far
2011-05-20 09:26:38,115 - INFO - Processed 77900000 reads so far
2011-05-20 09:26:46,682 - INFO - Processed 78000000 reads so far
2011-05-20 09:26:55,571 - INFO - Processed 78100000 reads so far
2011-05-20 09:27:15,967 - INFO - Processed 78200000 reads so far
2011-05-20 09:27:46,453 - INFO - Processed 78300000 reads so far
2011-05-20 09:27:57,436 - INFO - Processed 78400000 reads so far
2011-05-20 09:28:06,821 - INFO - Processed 78500000 reads so far
2011-05-20 09:28:17,754 - INFO - Processed 78600000 reads so far
2011-05-20 09:28:26,225 - INFO - Processed 78700000 reads so far
2011-05-20 09:28:32,969 - INFO - Processed 78800000 reads so far
2011-05-20 09:28:41,657 - INFO - Processed 78900000 reads so far
2011-05-20 09:28:52,039 - INFO - Processed 79000000 reads so far
2011-05-20 09:29:02,910 - INFO - Processed 79100000 reads so far
2011-05-20 09:29:14,184 - INFO - Processed 79200000 reads so far
2011-05-20 09:29:23,564 - INFO - Processed 79300000 reads so far
2011-05-20 09:29:31,194 - INFO - Processed 79400000 reads so far
2011-05-20 09:29:39,717 - INFO - Processed 79500000 reads so far
2011-05-20 09:29:49,322 - INFO - Processed 79600000 reads so far
2011-05-20 09:29:57,863 - INFO - Processed 79700000 reads so far
2011-05-20 09:30:04,924 - INFO - Processed 79800000 reads so far
2011-05-20 09:30:12,107 - INFO - Processed 79900000 reads so far
2011-05-20 09:30:22,667 - INFO - Processed 80000000 reads so far
2011-05-20 09:30:31,729 - INFO - Processed 80100000 reads so far
2011-05-20 09:30:40,304 - INFO - Processed 80200000 reads so far
2011-05-20 09:30:48,784 - INFO - Processed 80300000 reads so far
2011-05-20 09:30:57,797 - INFO - Processed 80400000 reads so far
2011-05-20 09:31:05,440 - INFO - Processed 80500000 reads so far
2011-05-20 09:31:13,133 - INFO - Processed 80600000 reads so far
2011-05-20 09:31:21,310 - INFO - Processed 80700000 reads so far
2011-05-20 09:31:29,773 - INFO - Processed 80800000 reads so far
2011-05-20 09:31:42,390 - INFO - Processed 80900000 reads so far
2011-05-20 09:31:51,491 - INFO - Processed 81000000 reads so far
2011-05-20 09:32:00,324 - INFO - Processed 81100000 reads so far
2011-05-20 09:32:09,885 - INFO - Processed 81200000 reads so far
2011-05-20 09:32:18,785 - INFO - Processed 81300000 reads so far
2011-05-20 09:32:28,852 - INFO - Processed 81400000 reads so far
2011-05-20 09:32:36,276 - INFO - Processed 81500000 reads so far
2011-05-20 09:32:44,202 - INFO - Processed 81600000 reads so far
2011-05-20 09:32:52,928 - INFO - Processed 81700000 reads so far
2011-05-20 09:33:00,955 - INFO - Processed 81800000 reads so far
2011-05-20 09:33:09,943 - INFO - Processed 81900000 reads so far
2011-05-20 09:33:19,083 - INFO - Processed 82000000 reads so far
2011-05-20 09:33:27,667 - INFO - Processed 82100000 reads so far
2011-05-20 09:33:36,391 - INFO - Processed 82200000 reads so far
2011-05-20 09:33:46,015 - INFO - Processed 82300000 reads so far
2011-05-20 09:33:58,541 - INFO - Processed 82400000 reads so far
2011-05-20 09:34:06,435 - INFO - Processed 82500000 reads so far
2011-05-20 09:34:14,058 - INFO - Processed 82600000 reads so far
2011-05-20 09:34:22,394 - INFO - Processed 82700000 reads so far
2011-05-20 09:34:34,870 - INFO - Processed 82800000 reads so far
2011-05-20 09:34:45,961 - INFO - Processed 82900000 reads so far
2011-05-20 09:34:53,146 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:102990184-123010184
2011-05-20 09:34:56,998 - INFO - Processed 83000000 reads so far
2011-05-20 09:35:06,769 - INFO - Processed 83100000 reads so far
2011-05-20 09:35:17,133 - INFO - Processed 83200000 reads so far
2011-05-20 09:35:26,516 - INFO - Processed 83300000 reads so far
2011-05-20 09:35:36,882 - INFO - Processed 83400000 reads so far
2011-05-20 09:35:48,685 - INFO - Processed 83500000 reads so far
2011-05-20 09:36:00,626 - INFO - Processed 83600000 reads so far
2011-05-20 09:36:08,599 - INFO - Processed 83700000 reads so far
2011-05-20 09:36:17,866 - INFO - Processed 83800000 reads so far
2011-05-20 09:36:29,958 - INFO - Processed 83900000 reads so far
2011-05-20 09:36:39,463 - INFO - Processed 84000000 reads so far
2011-05-20 09:36:40,519 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:122990193-143010193
2011-05-20 09:36:49,312 - INFO - Processed 84100000 reads so far
2011-05-20 09:36:59,978 - INFO - Processed 84200000 reads so far
2011-05-20 09:37:10,778 - INFO - Processed 84300000 reads so far
2011-05-20 09:37:22,884 - INFO - Processed 84400000 reads so far
2011-05-20 09:37:36,276 - INFO - Processed 84500000 reads so far
2011-05-20 09:37:47,503 - INFO - Processed 84600000 reads so far
2011-05-20 09:37:57,845 - INFO - Processed 84700000 reads so far
2011-05-20 09:38:08,279 - INFO - Processed 84800000 reads so far
2011-05-20 09:38:19,445 - INFO - Processed 84900000 reads so far
2011-05-20 09:38:28,938 - INFO - Processed 85000000 reads so far
2011-05-20 09:38:38,087 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:142990240-163010240
2011-05-20 09:38:38,550 - INFO - Processed 85100000 reads so far
2011-05-20 09:38:48,997 - INFO - Processed 85200000 reads so far
2011-05-20 09:39:01,661 - INFO - Processed 85300000 reads so far
2011-05-20 09:39:10,494 - INFO - Processed 85400000 reads so far
2011-05-20 09:39:22,153 - INFO - Processed 85500000 reads so far
2011-05-20 09:39:30,591 - INFO - Processed 85600000 reads so far
2011-05-20 09:39:40,824 - INFO - Processed 85700000 reads so far
2011-05-20 09:39:51,151 - INFO - Processed 85800000 reads so far
2011-05-20 09:40:02,857 - INFO - Processed 85900000 reads so far
2011-05-20 09:40:12,022 - INFO - Processed 86000000 reads so far
2011-05-20 09:40:21,830 - INFO - Processed 86100000 reads so far
2011-05-20 09:40:29,498 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:162990243-183010243
2011-05-20 09:40:32,651 - INFO - Processed 86200000 reads so far
2011-05-20 09:40:41,221 - INFO - Processed 86300000 reads so far
2011-05-20 09:40:53,349 - INFO - Processed 86400000 reads so far
2011-05-20 09:41:03,534 - INFO - Processed 86500000 reads so far
2011-05-20 09:41:13,771 - INFO - Processed 86600000 reads so far
2011-05-20 09:41:24,434 - INFO - Processed 86700000 reads so far
2011-05-20 09:41:33,620 - INFO - Processed 86800000 reads so far
2011-05-20 09:41:43,409 - INFO - Processed 86900000 reads so far
2011-05-20 09:41:55,121 - INFO - Processed 87000000 reads so far
2011-05-20 09:42:06,275 - INFO - Processed 87100000 reads so far
2011-05-20 09:42:15,027 - INFO - Processed 87200000 reads so far
2011-05-20 09:42:22,909 - INFO - Processed 87300000 reads so far
2011-05-20 09:42:23,433 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:2989998-23009998
2011-05-20 09:42:32,936 - INFO - Processed 87400000 reads so far
2011-05-20 09:42:43,368 - INFO - Processed 87500000 reads so far
2011-05-20 09:42:52,082 - INFO - Processed 87600000 reads so far
2011-05-20 09:43:03,850 - INFO - Processed 87700000 reads so far
2011-05-20 09:43:13,797 - INFO - Processed 87800000 reads so far
2011-05-20 09:43:26,163 - INFO - Processed 87900000 reads so far
2011-05-20 09:43:34,876 - INFO - Processed 88000000 reads so far
2011-05-20 09:43:44,313 - INFO - Processed 88100000 reads so far
2011-05-20 09:43:54,036 - INFO - Processed 88200000 reads so far
2011-05-20 09:44:04,733 - INFO - Processed 88300000 reads so far
2011-05-20 09:44:14,434 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:22989999-43009999
2011-05-20 09:44:15,278 - INFO - Processed 88400000 reads so far
2011-05-20 09:44:23,899 - INFO - Processed 88500000 reads so far
2011-05-20 09:44:33,308 - INFO - Processed 88600000 reads so far
2011-05-20 09:44:44,616 - INFO - Processed 88700000 reads so far
2011-05-20 09:44:54,385 - INFO - Processed 88800000 reads so far
2011-05-20 09:45:04,695 - INFO - Processed 88900000 reads so far
2011-05-20 09:45:14,624 - INFO - Processed 89000000 reads so far
2011-05-20 09:45:26,434 - INFO - Processed 89100000 reads so far
2011-05-20 09:45:52,678 - INFO - Processed 89200000 reads so far
2011-05-20 09:46:00,819 - INFO - Processed 89300000 reads so far
2011-05-20 09:46:10,398 - INFO - Processed 89400000 reads so far
2011-05-20 09:46:17,004 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:42990027-63010027
2011-05-20 09:46:20,172 - INFO - Processed 89500000 reads so far
2011-05-20 09:46:31,252 - INFO - Processed 89600000 reads so far
2011-05-20 09:46:41,778 - INFO - Processed 89700000 reads so far
2011-05-20 09:46:52,056 - INFO - Processed 89800000 reads so far
2011-05-20 09:47:02,269 - INFO - Processed 89900000 reads so far
2011-05-20 09:47:12,192 - INFO - Processed 90000000 reads so far
2011-05-20 09:47:23,215 - INFO - Processed 90100000 reads so far
2011-05-20 09:47:33,728 - INFO - Processed 90200000 reads so far
2011-05-20 09:47:44,374 - INFO - Processed 90300000 reads so far
2011-05-20 09:47:53,214 - INFO - Processed 90400000 reads so far
2011-05-20 09:48:02,303 - INFO - Processed 90500000 reads so far
2011-05-20 09:48:02,984 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:62990058-83010058
2011-05-20 09:48:11,329 - INFO - Processed 90600000 reads so far
2011-05-20 09:48:21,088 - INFO - Processed 90700000 reads so far
2011-05-20 09:48:31,135 - INFO - Processed 90800000 reads so far
2011-05-20 09:48:40,487 - INFO - Processed 90900000 reads so far
2011-05-20 09:48:50,557 - INFO - Processed 91000000 reads so far
2011-05-20 09:48:59,989 - INFO - Processed 91100000 reads so far
2011-05-20 09:49:09,800 - INFO - Processed 91200000 reads so far
2011-05-20 09:49:18,377 - INFO - Processed 91300000 reads so far
2011-05-20 09:49:27,644 - INFO - Processed 91400000 reads so far
2011-05-20 09:49:36,832 - INFO - Processed 91500000 reads so far
2011-05-20 09:49:42,650 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:82990136-103010136
2011-05-20 09:49:46,251 - INFO - Processed 91600000 reads so far
2011-05-20 09:49:57,616 - INFO - Processed 91700000 reads so far
2011-05-20 09:50:10,133 - INFO - Processed 91800000 reads so far
2011-05-20 09:50:21,435 - INFO - Processed 91900000 reads so far
2011-05-20 09:50:30,548 - INFO - Processed 92000000 reads so far
2011-05-20 09:50:39,997 - INFO - Processed 92100000 reads so far
2011-05-20 09:50:48,327 - INFO - Processed 92200000 reads so far
2011-05-20 09:50:58,199 - INFO - Processed 92300000 reads so far
2011-05-20 09:51:08,806 - INFO - Processed 92400000 reads so far
2011-05-20 09:51:18,552 - INFO - Processed 92500000 reads so far
2011-05-20 09:51:26,554 - INFO - Processed 92600000 reads so far
2011-05-20 09:51:28,939 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:102990145-123010145
2011-05-20 09:51:37,860 - INFO - Processed 92700000 reads so far
2011-05-20 09:51:46,980 - INFO - Processed 92800000 reads so far
2011-05-20 09:51:55,724 - INFO - Processed 92900000 reads so far
2011-05-20 09:52:04,731 - INFO - Processed 93000000 reads so far
2011-05-20 09:52:12,929 - INFO - Processed 93100000 reads so far
2011-05-20 09:52:22,451 - INFO - Processed 93200000 reads so far
2011-05-20 09:52:31,577 - INFO - Processed 93300000 reads so far
2011-05-20 09:52:42,468 - INFO - Processed 93400000 reads so far
2011-05-20 09:52:50,689 - INFO - Processed 93500000 reads so far
2011-05-20 09:52:59,063 - INFO - Processed 93600000 reads so far
2011-05-20 09:53:06,352 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:122990193-143010193
2011-05-20 09:53:07,789 - INFO - Processed 93700000 reads so far
2011-05-20 09:53:17,311 - INFO - Processed 93800000 reads so far
2011-05-20 09:53:25,378 - INFO - Processed 93900000 reads so far
2011-05-20 09:53:33,652 - INFO - Processed 94000000 reads so far
2011-05-20 09:53:42,897 - INFO - Processed 94100000 reads so far
2011-05-20 09:53:53,276 - INFO - Processed 94200000 reads so far
2011-05-20 09:54:01,632 - INFO - Processed 94300000 reads so far
2011-05-20 09:54:10,609 - INFO - Processed 94400000 reads so far
2011-05-20 09:54:19,356 - INFO - Processed 94500000 reads so far
2011-05-20 09:54:30,206 - INFO - Processed 94600000 reads so far
2011-05-20 09:54:40,009 - INFO - Processed 94700000 reads so far
2011-05-20 09:54:44,325 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:142990227-163010227
2011-05-20 09:54:48,737 - INFO - Processed 94800000 reads so far
2011-05-20 09:54:57,939 - INFO - Processed 94900000 reads so far
2011-05-20 09:55:08,448 - INFO - Processed 95000000 reads so far
2011-05-20 09:55:16,783 - INFO - Processed 95100000 reads so far
2011-05-20 09:55:26,343 - INFO - Processed 95200000 reads so far
2011-05-20 09:55:35,012 - INFO - Processed 95300000 reads so far
2011-05-20 09:55:44,414 - INFO - Processed 95400000 reads so far
2011-05-20 09:55:52,689 - INFO - Processed 95500000 reads so far
2011-05-20 09:56:01,443 - INFO - Processed 95600000 reads so far
2011-05-20 09:56:08,193 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3_random:0-20010027
2011-05-20 09:56:08,270 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:2989982-23009982
2011-05-20 09:56:11,778 - INFO - Processed 95700000 reads so far
2011-05-20 09:56:21,430 - INFO - Processed 95800000 reads so far
2011-05-20 09:56:30,510 - INFO - Processed 95900000 reads so far
2011-05-20 09:56:42,207 - INFO - Processed 96000000 reads so far
2011-05-20 09:56:50,369 - INFO - Processed 96100000 reads so far
2011-05-20 09:56:58,640 - INFO - Processed 96200000 reads so far
2011-05-20 09:57:07,795 - INFO - Processed 96300000 reads so far
2011-05-20 09:57:17,116 - INFO - Processed 96400000 reads so far
2011-05-20 09:57:27,605 - INFO - Processed 96500000 reads so far
2011-05-20 09:57:36,705 - INFO - Processed 96600000 reads so far
2011-05-20 09:57:46,408 - INFO - Processed 96700000 reads so far
2011-05-20 09:57:53,528 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:22990019-43010019
2011-05-20 09:57:56,599 - INFO - Processed 96800000 reads so far
2011-05-20 09:58:05,358 - INFO - Processed 96900000 reads so far
2011-05-20 09:58:14,034 - INFO - Processed 97000000 reads so far
2011-05-20 09:58:22,191 - INFO - Processed 97100000 reads so far
2011-05-20 09:58:31,995 - INFO - Processed 97200000 reads so far
2011-05-20 09:58:43,257 - INFO - Processed 97300000 reads so far
2011-05-20 09:58:51,781 - INFO - Processed 97400000 reads so far
2011-05-20 09:59:00,733 - INFO - Processed 97500000 reads so far
2011-05-20 09:59:08,870 - INFO - Processed 97600000 reads so far
2011-05-20 09:59:17,250 - INFO - Processed 97700000 reads so far
2011-05-20 09:59:24,860 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:42990027-63010027
2011-05-20 09:59:26,179 - INFO - Processed 97800000 reads so far
2011-05-20 09:59:37,542 - INFO - Processed 97900000 reads so far
2011-05-20 09:59:47,593 - INFO - Processed 98000000 reads so far
2011-05-20 09:59:56,259 - INFO - Processed 98100000 reads so far
2011-05-20 10:00:06,446 - INFO - Processed 98200000 reads so far
2011-05-20 10:00:18,190 - INFO - Processed 98300000 reads so far
2011-05-20 10:00:29,645 - INFO - Processed 98400000 reads so far
2011-05-20 10:00:43,424 - INFO - Processed 98500000 reads so far
2011-05-20 10:00:51,577 - INFO - Processed 98600000 reads so far
2011-05-20 10:01:03,277 - INFO - Processed 98700000 reads so far
2011-05-20 10:01:11,615 - INFO - Processed 98800000 reads so far
2011-05-20 10:01:21,920 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:62990034-83010034
2011-05-20 10:01:22,939 - INFO - Processed 98900000 reads so far
2011-05-20 10:01:31,186 - INFO - Processed 99000000 reads so far
2011-05-20 10:01:41,285 - INFO - Processed 99100000 reads so far
2011-05-20 10:01:52,764 - INFO - Processed 99200000 reads so far
2011-05-20 10:02:01,649 - INFO - Processed 99300000 reads so far
2011-05-20 10:02:09,290 - INFO - Processed 99400000 reads so far
2011-05-20 10:02:16,617 - INFO - Processed 99500000 reads so far
2011-05-20 10:02:24,661 - INFO - Processed 99600000 reads so far
2011-05-20 10:02:34,505 - INFO - Processed 99700000 reads so far
2011-05-20 10:02:46,061 - INFO - Processed 99800000 reads so far
2011-05-20 10:02:56,743 - INFO - Processed 99900000 reads so far
2011-05-20 10:03:09,022 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:82990065-103010065
2011-05-20 10:03:10,337 - INFO - Processed 100000000 reads so far
2011-05-20 10:03:20,876 - INFO - Processed 100100000 reads so far
2011-05-20 10:03:31,747 - INFO - Processed 100200000 reads so far
2011-05-20 10:03:42,870 - INFO - Processed 100300000 reads so far
2011-05-20 10:03:53,587 - INFO - Processed 100400000 reads so far
2011-05-20 10:04:05,648 - INFO - Processed 100500000 reads so far
2011-05-20 10:04:17,997 - INFO - Processed 100600000 reads so far
2011-05-20 10:04:30,146 - INFO - Processed 100700000 reads so far
2011-05-20 10:04:42,095 - INFO - Processed 100800000 reads so far
2011-05-20 10:04:54,426 - INFO - Processed 100900000 reads so far
2011-05-20 10:05:03,642 - INFO - Processed 101000000 reads so far
2011-05-20 10:05:11,642 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:102990077-123010077
2011-05-20 10:05:15,187 - INFO - Processed 101100000 reads so far
2011-05-20 10:05:26,361 - INFO - Processed 101200000 reads so far
2011-05-20 10:05:38,204 - INFO - Processed 101300000 reads so far
2011-05-20 10:05:49,963 - INFO - Processed 101400000 reads so far
2011-05-20 10:06:01,195 - INFO - Processed 101500000 reads so far
2011-05-20 10:06:12,539 - INFO - Processed 101600000 reads so far
2011-05-20 10:06:24,218 - INFO - Processed 101700000 reads so far
2011-05-20 10:06:36,944 - INFO - Processed 101800000 reads so far
2011-05-20 10:06:48,256 - INFO - Processed 101900000 reads so far
2011-05-20 10:06:59,480 - INFO - Processed 102000000 reads so far
2011-05-20 10:07:06,084 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:122990083-143010083
2011-05-20 10:07:12,585 - INFO - Processed 102100000 reads so far
2011-05-20 10:07:23,254 - INFO - Processed 102200000 reads so far
2011-05-20 10:07:34,096 - INFO - Processed 102300000 reads so far
2011-05-20 10:07:47,326 - INFO - Processed 102400000 reads so far
2011-05-20 10:07:59,208 - INFO - Processed 102500000 reads so far
2011-05-20 10:08:10,777 - INFO - Processed 102600000 reads so far
2011-05-20 10:08:21,911 - INFO - Processed 102700000 reads so far
2011-05-20 10:08:32,742 - INFO - Processed 102800000 reads so far
2011-05-20 10:08:43,724 - INFO - Processed 102900000 reads so far
2011-05-20 10:08:55,114 - INFO - Processed 103000000 reads so far
2011-05-20 10:09:02,061 - INFO - Processed 103100000 reads so far
2011-05-20 10:09:02,705 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:142990088-163010088
2011-05-20 10:09:12,571 - INFO - Processed 103200000 reads so far
2011-05-20 10:09:26,820 - INFO - Processed 103300000 reads so far
2011-05-20 10:09:41,349 - INFO - Processed 103400000 reads so far
2011-05-20 10:09:52,400 - INFO - Processed 103500000 reads so far
2011-05-20 10:10:18,433 - INFO - Processed 103600000 reads so far
2011-05-20 10:10:29,637 - INFO - Processed 103700000 reads so far
2011-05-20 10:10:43,517 - INFO - Processed 103800000 reads so far
2011-05-20 10:11:12,845 - INFO - Processed 103900000 reads so far
2011-05-20 10:11:25,125 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4_random:0-20010033
2011-05-20 10:11:26,019 - INFO - Processed 104000000 reads so far
2011-05-20 10:11:26,161 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:2990005-23010005
2011-05-20 10:11:38,813 - INFO - Processed 104100000 reads so far
2011-05-20 10:11:51,002 - INFO - Processed 104200000 reads so far
2011-05-20 10:12:00,420 - INFO - Processed 104300000 reads so far
2011-05-20 10:12:10,169 - INFO - Processed 104400000 reads so far
2011-05-20 10:12:20,531 - INFO - Processed 104500000 reads so far
2011-05-20 10:12:31,962 - INFO - Processed 104600000 reads so far
2011-05-20 10:12:42,591 - INFO - Processed 104700000 reads so far
2011-05-20 10:12:53,085 - INFO - Processed 104800000 reads so far
2011-05-20 10:13:04,186 - INFO - Processed 104900000 reads so far
2011-05-20 10:13:17,743 - INFO - Processed 105000000 reads so far
2011-05-20 10:13:24,698 - INFO - Processed 105100000 reads so far
2011-05-20 10:13:27,544 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:22990534-43010534
2011-05-20 10:13:33,977 - INFO - Processed 105200000 reads so far
2011-05-20 10:13:43,671 - INFO - Processed 105300000 reads so far
2011-05-20 10:13:54,014 - INFO - Processed 105400000 reads so far
2011-05-20 10:14:02,662 - INFO - Processed 105500000 reads so far
2011-05-20 10:14:11,829 - INFO - Processed 105600000 reads so far
2011-05-20 10:14:20,951 - INFO - Processed 105700000 reads so far
2011-05-20 10:14:31,390 - INFO - Processed 105800000 reads so far
2011-05-20 10:14:40,931 - INFO - Processed 105900000 reads so far
2011-05-20 10:14:50,947 - INFO - Processed 106000000 reads so far
2011-05-20 10:15:00,490 - INFO - Processed 106100000 reads so far
2011-05-20 10:15:09,174 - INFO - Processed 106200000 reads so far
2011-05-20 10:15:11,081 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:42990536-63010536
2011-05-20 10:15:18,414 - INFO - Processed 106300000 reads so far
2011-05-20 10:15:27,907 - INFO - Processed 106400000 reads so far
2011-05-20 10:15:37,374 - INFO - Processed 106500000 reads so far
2011-05-20 10:15:45,768 - INFO - Processed 106600000 reads so far
2011-05-20 10:15:55,732 - INFO - Processed 106700000 reads so far
2011-05-20 10:16:05,444 - INFO - Processed 106800000 reads so far
2011-05-20 10:16:19,562 - INFO - Processed 106900000 reads so far
2011-05-20 10:16:30,736 - INFO - Processed 107000000 reads so far
2011-05-20 10:16:40,404 - INFO - Processed 107100000 reads so far
2011-05-20 10:16:47,857 - INFO - Processed 107200000 reads so far
2011-05-20 10:16:55,855 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:62990556-83010556
2011-05-20 10:16:58,101 - INFO - Processed 107300000 reads so far
2011-05-20 10:17:06,992 - INFO - Processed 107400000 reads so far
2011-05-20 10:17:15,045 - INFO - Processed 107500000 reads so far
2011-05-20 10:17:22,805 - INFO - Processed 107600000 reads so far
2011-05-20 10:17:31,867 - INFO - Processed 107700000 reads so far
2011-05-20 10:17:40,164 - INFO - Processed 107800000 reads so far
2011-05-20 10:17:49,915 - INFO - Processed 107900000 reads so far
2011-05-20 10:17:57,244 - INFO - Processed 108000000 reads so far
2011-05-20 10:18:07,322 - INFO - Processed 108100000 reads so far
2011-05-20 10:18:16,672 - INFO - Processed 108200000 reads so far
2011-05-20 10:18:28,835 - INFO - Processed 108300000 reads so far
2011-05-20 10:18:32,697 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:82990560-103010560
2011-05-20 10:18:47,079 - INFO - Processed 108400000 reads so far
2011-05-20 10:18:56,752 - INFO - Processed 108500000 reads so far
2011-05-20 10:19:06,176 - INFO - Processed 108600000 reads so far
2011-05-20 10:19:15,986 - INFO - Processed 108700000 reads so far
2011-05-20 10:19:27,530 - INFO - Processed 108800000 reads so far
2011-05-20 10:19:39,010 - INFO - Processed 108900000 reads so far
2011-05-20 10:19:48,242 - INFO - Processed 109000000 reads so far
2011-05-20 10:19:59,020 - INFO - Processed 109100000 reads so far
2011-05-20 10:20:09,425 - INFO - Processed 109200000 reads so far
2011-05-20 10:20:21,472 - INFO - Processed 109300000 reads so far
2011-05-20 10:20:24,457 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:102990565-123010565
2011-05-20 10:20:31,220 - INFO - Processed 109400000 reads so far
2011-05-20 10:20:42,718 - INFO - Processed 109500000 reads so far
2011-05-20 10:20:52,706 - INFO - Processed 109600000 reads so far
2011-05-20 10:21:01,462 - INFO - Processed 109700000 reads so far
2011-05-20 10:21:09,193 - INFO - Processed 109800000 reads so far
2011-05-20 10:21:19,309 - INFO - Processed 109900000 reads so far
2011-05-20 10:21:28,854 - INFO - Processed 110000000 reads so far
2011-05-20 10:21:38,335 - INFO - Processed 110100000 reads so far
2011-05-20 10:21:47,950 - INFO - Processed 110200000 reads so far
2011-05-20 10:21:57,435 - INFO - Processed 110300000 reads so far
2011-05-20 10:22:11,751 - INFO - Processed 110400000 reads so far
2011-05-20 10:22:16,742 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:122990583-143010583
2011-05-20 10:22:23,309 - INFO - Processed 110500000 reads so far
2011-05-20 10:22:31,666 - INFO - Processed 110600000 reads so far
2011-05-20 10:22:39,754 - INFO - Processed 110700000 reads so far
2011-05-20 10:22:48,842 - INFO - Processed 110800000 reads so far
2011-05-20 10:22:59,075 - INFO - Processed 110900000 reads so far
2011-05-20 10:23:08,728 - INFO - Processed 111000000 reads so far
2011-05-20 10:23:17,724 - INFO - Processed 111100000 reads so far
2011-05-20 10:23:26,633 - INFO - Processed 111200000 reads so far
2011-05-20 10:23:36,337 - INFO - Processed 111300000 reads so far
2011-05-20 10:23:45,137 - INFO - Processed 111400000 reads so far
2011-05-20 10:23:51,925 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:142990606-163010606
2011-05-20 10:23:53,281 - INFO - Processed 111500000 reads so far
2011-05-20 10:24:03,516 - INFO - Processed 111600000 reads so far
2011-05-20 10:24:13,483 - INFO - Processed 111700000 reads so far
2011-05-20 10:24:23,164 - INFO - Processed 111800000 reads so far
2011-05-20 10:24:33,851 - INFO - Processed 111900000 reads so far
2011-05-20 10:24:40,906 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5_random:0-20010040
2011-05-20 10:24:41,222 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:2989987-23009987
2011-05-20 10:24:41,839 - INFO - Processed 112000000 reads so far
2011-05-20 10:24:50,627 - INFO - Processed 112100000 reads so far
2011-05-20 10:24:59,236 - INFO - Processed 112200000 reads so far
2011-05-20 10:25:06,282 - INFO - Processed 112300000 reads so far
2011-05-20 10:25:14,174 - INFO - Processed 112400000 reads so far
2011-05-20 10:25:22,202 - INFO - Processed 112500000 reads so far
2011-05-20 10:25:29,215 - INFO - Processed 112600000 reads so far
2011-05-20 10:25:38,341 - INFO - Processed 112700000 reads so far
2011-05-20 10:25:46,486 - INFO - Processed 112800000 reads so far
2011-05-20 10:25:56,467 - INFO - Processed 112900000 reads so far
2011-05-20 10:26:03,812 - INFO - Processed 113000000 reads so far
2011-05-20 10:26:07,787 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:22990007-43010007
2011-05-20 10:26:10,875 - INFO - Processed 113100000 reads so far
2011-05-20 10:26:18,845 - INFO - Processed 113200000 reads so far
2011-05-20 10:26:28,721 - INFO - Processed 113300000 reads so far
2011-05-20 10:26:39,861 - INFO - Processed 113400000 reads so far
2011-05-20 10:26:47,775 - INFO - Processed 113500000 reads so far
2011-05-20 10:26:58,881 - INFO - Processed 113600000 reads so far
2011-05-20 10:27:08,809 - INFO - Processed 113700000 reads so far
2011-05-20 10:27:18,016 - INFO - Processed 113800000 reads so far
2011-05-20 10:27:27,433 - INFO - Processed 113900000 reads so far
2011-05-20 10:27:36,231 - INFO - Processed 114000000 reads so far
2011-05-20 10:27:43,846 - INFO - Processed 114100000 reads so far
2011-05-20 10:27:46,555 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:42990008-63010008
2011-05-20 10:27:52,435 - INFO - Processed 114200000 reads so far
2011-05-20 10:28:00,903 - INFO - Processed 114300000 reads so far
2011-05-20 10:28:08,836 - INFO - Processed 114400000 reads so far
2011-05-20 10:28:17,894 - INFO - Processed 114500000 reads so far
2011-05-20 10:28:30,403 - INFO - Processed 114600000 reads so far
2011-05-20 10:28:41,897 - INFO - Processed 114700000 reads so far
2011-05-20 10:28:54,673 - INFO - Processed 114800000 reads so far
2011-05-20 10:29:08,025 - INFO - Processed 114900000 reads so far
2011-05-20 10:29:17,761 - INFO - Processed 115000000 reads so far
2011-05-20 10:29:29,405 - INFO - Processed 115100000 reads so far
2011-05-20 10:29:40,295 - INFO - Processed 115200000 reads so far
2011-05-20 10:29:41,365 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:62990010-83010010
2011-05-20 10:29:53,269 - INFO - Processed 115300000 reads so far
2011-05-20 10:30:06,399 - INFO - Processed 115400000 reads so far
2011-05-20 10:30:17,625 - INFO - Processed 115500000 reads so far
2011-05-20 10:30:28,961 - INFO - Processed 115600000 reads so far
2011-05-20 10:30:38,996 - INFO - Processed 115700000 reads so far
2011-05-20 10:30:47,126 - INFO - Processed 115800000 reads so far
2011-05-20 10:31:01,292 - INFO - Processed 115900000 reads so far
2011-05-20 10:31:10,334 - INFO - Processed 116000000 reads so far
2011-05-20 10:31:22,962 - INFO - Processed 116100000 reads so far
2011-05-20 10:31:36,345 - INFO - Processed 116200000 reads so far
2011-05-20 10:31:42,574 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:82990014-103010014
2011-05-20 10:31:50,351 - INFO - Processed 116300000 reads so far
2011-05-20 10:32:05,459 - INFO - Processed 116400000 reads so far
2011-05-20 10:32:17,958 - INFO - Processed 116500000 reads so far
2011-05-20 10:32:29,343 - INFO - Processed 116600000 reads so far
2011-05-20 10:32:42,346 - INFO - Processed 116700000 reads so far
2011-05-20 10:32:53,864 - INFO - Processed 116800000 reads so far
2011-05-20 10:33:05,093 - INFO - Processed 116900000 reads so far
2011-05-20 10:33:16,207 - INFO - Processed 117000000 reads so far
2011-05-20 10:33:28,798 - INFO - Processed 117100000 reads so far
2011-05-20 10:33:39,793 - INFO - Processed 117200000 reads so far
2011-05-20 10:33:52,809 - INFO - Processed 117300000 reads so far
2011-05-20 10:33:56,663 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:102990049-123010049
2011-05-20 10:34:03,514 - INFO - Processed 117400000 reads so far
2011-05-20 10:34:13,123 - INFO - Processed 117500000 reads so far
2011-05-20 10:34:23,365 - INFO - Processed 117600000 reads so far
2011-05-20 10:34:33,228 - INFO - Processed 117700000 reads so far
2011-05-20 10:34:43,128 - INFO - Processed 117800000 reads so far
2011-05-20 10:34:52,219 - INFO - Processed 117900000 reads so far
2011-05-20 10:35:04,085 - INFO - Processed 118000000 reads so far
2011-05-20 10:35:13,209 - INFO - Processed 118100000 reads so far
2011-05-20 10:35:22,696 - INFO - Processed 118200000 reads so far
2011-05-20 10:35:32,261 - INFO - Processed 118300000 reads so far
2011-05-20 10:35:42,020 - INFO - Processed 118400000 reads so far
2011-05-20 10:35:51,033 - INFO - Processed 118500000 reads so far
2011-05-20 10:36:01,759 - INFO - Processed 118600000 reads so far
2011-05-20 10:36:10,333 - INFO - Processed 118700000 reads so far
2011-05-20 10:36:19,507 - INFO - Processed 118800000 reads so far
2011-05-20 10:36:28,877 - INFO - Processed 118900000 reads so far
2011-05-20 10:36:39,334 - INFO - Processed 119000000 reads so far
2011-05-20 10:36:47,257 - INFO - Processed 119100000 reads so far
2011-05-20 10:36:55,422 - INFO - Processed 119200000 reads so far
2011-05-20 10:37:03,285 - INFO - Processed 119300000 reads so far
2011-05-20 10:37:12,670 - INFO - Processed 119400000 reads so far
2011-05-20 10:37:20,318 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:122990063-143010063
2011-05-20 10:37:21,923 - INFO - Processed 119500000 reads so far
2011-05-20 10:37:29,013 - INFO - Processed 119600000 reads so far
2011-05-20 10:37:40,642 - INFO - Processed 119700000 reads so far
2011-05-20 10:37:50,012 - INFO - Processed 119800000 reads so far
2011-05-20 10:37:59,424 - INFO - Processed 119900000 reads so far
2011-05-20 10:38:08,821 - INFO - Processed 120000000 reads so far
2011-05-20 10:38:19,975 - INFO - Processed 120100000 reads so far
2011-05-20 10:38:30,259 - INFO - Processed 120200000 reads so far
2011-05-20 10:38:37,205 - INFO - Processed 120300000 reads so far
2011-05-20 10:38:46,366 - INFO - Processed 120400000 reads so far
2011-05-20 10:38:58,237 - INFO - Processed 120500000 reads so far
2011-05-20 10:39:04,303 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:142990065-163010065
2011-05-20 10:39:07,630 - INFO - Processed 120600000 reads so far
2011-05-20 10:39:18,997 - INFO - Processed 120700000 reads so far
2011-05-20 10:39:31,209 - INFO - Processed 120800000 reads so far
2011-05-20 10:39:42,027 - INFO - Processed 120900000 reads so far
2011-05-20 10:39:44,370 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:2990168-23010168
2011-05-20 10:39:54,879 - INFO - Processed 121000000 reads so far
2011-05-20 10:40:06,055 - INFO - Processed 121100000 reads so far
2011-05-20 10:40:19,352 - INFO - Processed 121200000 reads so far
2011-05-20 10:40:32,836 - INFO - Processed 121300000 reads so far
2011-05-20 10:40:44,287 - INFO - Processed 121400000 reads so far
2011-05-20 10:40:55,516 - INFO - Processed 121500000 reads so far
2011-05-20 10:41:07,205 - INFO - Processed 121600000 reads so far
2011-05-20 10:41:19,519 - INFO - Processed 121700000 reads so far
2011-05-20 10:41:30,571 - INFO - Processed 121800000 reads so far
2011-05-20 10:41:42,054 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:22990223-43010223
2011-05-20 10:41:42,253 - INFO - Processed 121900000 reads so far
2011-05-20 10:41:57,065 - INFO - Processed 122000000 reads so far
2011-05-20 10:42:07,668 - INFO - Processed 122100000 reads so far
2011-05-20 10:42:19,553 - INFO - Processed 122200000 reads so far
2011-05-20 10:42:30,801 - INFO - Processed 122300000 reads so far
2011-05-20 10:42:42,104 - INFO - Processed 122400000 reads so far
2011-05-20 10:42:53,653 - INFO - Processed 122500000 reads so far
2011-05-20 10:43:04,160 - INFO - Processed 122600000 reads so far
2011-05-20 10:43:14,850 - INFO - Processed 122700000 reads so far
2011-05-20 10:43:17,850 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:46352990-66372990
2011-05-20 10:43:26,300 - INFO - Processed 122800000 reads so far
2011-05-20 10:43:35,584 - INFO - Processed 122900000 reads so far
2011-05-20 10:43:46,299 - INFO - Processed 123000000 reads so far
2011-05-20 10:43:59,405 - INFO - Processed 123100000 reads so far
2011-05-20 10:44:10,968 - INFO - Processed 123200000 reads so far
2011-05-20 10:44:22,235 - INFO - Processed 123300000 reads so far
2011-05-20 10:44:33,424 - INFO - Processed 123400000 reads so far
2011-05-20 10:44:46,100 - INFO - Processed 123500000 reads so far
2011-05-20 10:44:58,407 - INFO - Processed 123600000 reads so far
2011-05-20 10:45:09,276 - INFO - Processed 123700000 reads so far
2011-05-20 10:45:20,553 - INFO - Processed 123800000 reads so far
2011-05-20 10:45:21,407 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:66352991-86372991
2011-05-20 10:45:30,972 - INFO - Processed 123900000 reads so far
2011-05-20 10:45:42,242 - INFO - Processed 124000000 reads so far
2011-05-20 10:45:53,540 - INFO - Processed 124100000 reads so far
2011-05-20 10:46:04,902 - INFO - Processed 124200000 reads so far
2011-05-20 10:46:16,693 - INFO - Processed 124300000 reads so far
2011-05-20 10:46:28,173 - INFO - Processed 124400000 reads so far
2011-05-20 10:46:43,453 - INFO - Processed 124500000 reads so far
2011-05-20 10:46:58,178 - INFO - Processed 124600000 reads so far
2011-05-20 10:47:10,403 - INFO - Processed 124700000 reads so far
2011-05-20 10:47:21,802 - INFO - Processed 124800000 reads so far
2011-05-20 10:47:33,204 - INFO - Processed 124900000 reads so far
2011-05-20 10:47:34,076 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:86353046-106373046
2011-05-20 10:47:45,225 - INFO - Processed 125000000 reads so far
2011-05-20 10:47:58,444 - INFO - Processed 125100000 reads so far
2011-05-20 10:48:11,175 - INFO - Processed 125200000 reads so far
2011-05-20 10:48:22,534 - INFO - Processed 125300000 reads so far
2011-05-20 10:48:34,030 - INFO - Processed 125400000 reads so far
2011-05-20 10:48:45,805 - INFO - Processed 125500000 reads so far
2011-05-20 10:48:57,785 - INFO - Processed 125600000 reads so far
2011-05-20 10:49:12,864 - INFO - Processed 125700000 reads so far
2011-05-20 10:49:24,403 - INFO - Processed 125800000 reads so far
2011-05-20 10:49:35,770 - INFO - Processed 125900000 reads so far
2011-05-20 10:49:46,070 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:106353078-126373078
2011-05-20 10:49:47,449 - INFO - Processed 126000000 reads so far
2011-05-20 10:49:58,298 - INFO - Processed 126100000 reads so far
2011-05-20 10:50:06,661 - INFO - Processed 126200000 reads so far
2011-05-20 10:50:16,826 - INFO - Processed 126300000 reads so far
2011-05-20 10:50:25,603 - INFO - Processed 126400000 reads so far
2011-05-20 10:50:36,322 - INFO - Processed 126500000 reads so far
2011-05-20 10:50:45,565 - INFO - Processed 126600000 reads so far
2011-05-20 10:50:55,173 - INFO - Processed 126700000 reads so far
2011-05-20 10:51:04,534 - INFO - Processed 126800000 reads so far
2011-05-20 10:51:15,433 - INFO - Processed 126900000 reads so far
2011-05-20 10:51:26,076 - INFO - Processed 127000000 reads so far
2011-05-20 10:51:30,907 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:126353079-146373079
2011-05-20 10:51:34,588 - INFO - Processed 127100000 reads so far
2011-05-20 10:51:42,823 - INFO - Processed 127200000 reads so far
2011-05-20 10:51:53,838 - INFO - Processed 127300000 reads so far
2011-05-20 10:52:02,981 - INFO - Processed 127400000 reads so far
2011-05-20 10:52:13,691 - INFO - Processed 127500000 reads so far
2011-05-20 10:52:27,066 - INFO - Processed 127600000 reads so far
2011-05-20 10:52:35,831 - INFO - Processed 127700000 reads so far
2011-05-20 10:52:47,315 - INFO - Processed 127800000 reads so far
2011-05-20 10:52:58,796 - INFO - Processed 127900000 reads so far
2011-05-20 10:53:11,079 - INFO - Processed 128000000 reads so far
2011-05-20 10:53:20,855 - INFO - Processed 128100000 reads so far
2011-05-20 10:53:25,202 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:146353086-166373086
2011-05-20 10:53:31,351 - INFO - Processed 128200000 reads so far
2011-05-20 10:53:39,428 - INFO - Processed 128300000 reads so far
2011-05-20 10:53:50,892 - INFO - Processed 128400000 reads so far
2011-05-20 10:54:01,237 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7_random:0-20010079
2011-05-20 10:54:01,449 - INFO - Processed 128500000 reads so far
2011-05-20 10:54:02,891 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:2990057-23010057
2011-05-20 10:54:11,069 - INFO - Processed 128600000 reads so far
2011-05-20 10:54:21,342 - INFO - Processed 128700000 reads so far
2011-05-20 10:54:31,388 - INFO - Processed 128800000 reads so far
2011-05-20 10:54:41,000 - INFO - Processed 128900000 reads so far
2011-05-20 10:54:53,516 - INFO - Processed 129000000 reads so far
2011-05-20 10:55:03,249 - INFO - Processed 129100000 reads so far
2011-05-20 10:55:10,566 - INFO - Processed 129200000 reads so far
2011-05-20 10:55:20,316 - INFO - Processed 129300000 reads so far
2011-05-20 10:55:31,214 - INFO - Processed 129400000 reads so far
2011-05-20 10:55:38,226 - INFO - Processed 129500000 reads so far
2011-05-20 10:55:48,489 - INFO - Processed 129600000 reads so far
2011-05-20 10:55:57,820 - INFO - Processed 129700000 reads so far
2011-05-20 10:56:02,320 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:22990082-43010082
2011-05-20 10:56:09,363 - INFO - Processed 129800000 reads so far
2011-05-20 10:56:19,225 - INFO - Processed 129900000 reads so far
2011-05-20 10:56:28,419 - INFO - Processed 130000000 reads so far
2011-05-20 10:56:37,941 - INFO - Processed 130100000 reads so far
2011-05-20 10:56:47,935 - INFO - Processed 130200000 reads so far
2011-05-20 10:56:57,743 - INFO - Processed 130300000 reads so far
2011-05-20 10:57:08,707 - INFO - Processed 130400000 reads so far
2011-05-20 10:57:19,796 - INFO - Processed 130500000 reads so far
2011-05-20 10:57:27,654 - INFO - Processed 130600000 reads so far
2011-05-20 10:57:37,022 - INFO - Processed 130700000 reads so far
2011-05-20 10:57:45,707 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:42990106-63010106
2011-05-20 10:57:46,700 - INFO - Processed 130800000 reads so far
2011-05-20 10:57:56,336 - INFO - Processed 130900000 reads so far
2011-05-20 10:58:06,146 - INFO - Processed 131000000 reads so far
2011-05-20 10:58:14,808 - INFO - Processed 131100000 reads so far
2011-05-20 10:58:22,282 - INFO - Processed 131200000 reads so far
2011-05-20 10:58:31,253 - INFO - Processed 131300000 reads so far
2011-05-20 10:58:42,867 - INFO - Processed 131400000 reads so far
2011-05-20 10:58:50,900 - INFO - Processed 131500000 reads so far
2011-05-20 10:59:02,205 - INFO - Processed 131600000 reads so far
2011-05-20 10:59:13,500 - INFO - Processed 131700000 reads so far
2011-05-20 10:59:19,276 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:62990130-83010130
2011-05-20 10:59:24,456 - INFO - Processed 131800000 reads so far
2011-05-20 10:59:33,720 - INFO - Processed 131900000 reads so far
2011-05-20 10:59:43,289 - INFO - Processed 132000000 reads so far
2011-05-20 10:59:54,525 - INFO - Processed 132100000 reads so far
2011-05-20 11:00:06,905 - INFO - Processed 132200000 reads so far
2011-05-20 11:00:17,071 - INFO - Processed 132300000 reads so far
2011-05-20 11:00:28,165 - INFO - Processed 132400000 reads so far
2011-05-20 11:00:38,029 - INFO - Processed 132500000 reads so far
2011-05-20 11:00:49,147 - INFO - Processed 132600000 reads so far
2011-05-20 11:00:59,754 - INFO - Processed 132700000 reads so far
2011-05-20 11:01:09,881 - INFO - Processed 132800000 reads so far
2011-05-20 11:01:13,276 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:82990147-103010147
2011-05-20 11:01:18,851 - INFO - Processed 132900000 reads so far
2011-05-20 11:01:28,555 - INFO - Processed 133000000 reads so far
2011-05-20 11:01:41,903 - INFO - Processed 133100000 reads so far
2011-05-20 11:01:52,236 - INFO - Processed 133200000 reads so far
2011-05-20 11:02:02,072 - INFO - Processed 133300000 reads so far
2011-05-20 11:02:13,887 - INFO - Processed 133400000 reads so far
2011-05-20 11:02:23,736 - INFO - Processed 133500000 reads so far
2011-05-20 11:02:33,752 - INFO - Processed 133600000 reads so far
2011-05-20 11:02:45,829 - INFO - Processed 133700000 reads so far
2011-05-20 11:02:55,343 - INFO - Processed 133800000 reads so far
2011-05-20 11:03:05,422 - INFO - Processed 133900000 reads so far
2011-05-20 11:03:06,341 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:102990164-123010164
2011-05-20 11:03:14,562 - INFO - Processed 134000000 reads so far
2011-05-20 11:03:24,529 - INFO - Processed 134100000 reads so far
2011-05-20 11:03:33,467 - INFO - Processed 134200000 reads so far
2011-05-20 11:03:43,917 - INFO - Processed 134300000 reads so far
2011-05-20 11:03:53,476 - INFO - Processed 134400000 reads so far
2011-05-20 11:04:04,521 - INFO - Processed 134500000 reads so far
2011-05-20 11:04:15,214 - INFO - Processed 134600000 reads so far
2011-05-20 11:04:24,585 - INFO - Processed 134700000 reads so far
2011-05-20 11:04:35,310 - INFO - Processed 134800000 reads so far
2011-05-20 11:04:45,445 - INFO - Processed 134900000 reads so far
2011-05-20 11:04:53,389 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:122990165-143010165
2011-05-20 11:04:55,991 - INFO - Processed 135000000 reads so far
2011-05-20 11:05:04,846 - INFO - Processed 135100000 reads so far
2011-05-20 11:05:14,617 - INFO - Processed 135200000 reads so far
2011-05-20 11:05:26,300 - INFO - Processed 135300000 reads so far
2011-05-20 11:05:36,388 - INFO - Processed 135400000 reads so far
2011-05-20 11:05:43,089 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8_random:0-20010005
2011-05-20 11:05:46,018 - INFO - Processed 135500000 reads so far
2011-05-20 11:05:53,929 - INFO - Processed 135600000 reads so far
2011-05-20 11:05:58,210 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:2989934-23009934
2011-05-20 11:06:01,712 - INFO - Processed 135700000 reads so far
2011-05-20 11:06:09,188 - INFO - Processed 135800000 reads so far
2011-05-20 11:06:16,841 - INFO - Processed 135900000 reads so far
2011-05-20 11:06:25,673 - INFO - Processed 136000000 reads so far
2011-05-20 11:06:33,673 - INFO - Processed 136100000 reads so far
2011-05-20 11:06:41,713 - INFO - Processed 136200000 reads so far
2011-05-20 11:06:50,338 - INFO - Processed 136300000 reads so far
2011-05-20 11:06:58,094 - INFO - Processed 136400000 reads so far
2011-05-20 11:07:05,165 - INFO - Processed 136500000 reads so far
2011-05-20 11:07:13,838 - INFO - Processed 136600000 reads so far
2011-05-20 11:07:23,252 - INFO - Processed 136700000 reads so far
2011-05-20 11:07:31,140 - INFO - Processed 136800000 reads so far
2011-05-20 11:07:39,527 - INFO - Processed 136900000 reads so far
2011-05-20 11:07:47,441 - INFO - Processed 137000000 reads so far
2011-05-20 11:07:55,552 - INFO - Processed 137100000 reads so far
2011-05-20 11:08:03,470 - INFO - Processed 137200000 reads so far
2011-05-20 11:08:11,008 - INFO - Processed 137300000 reads so far
2011-05-20 11:08:19,476 - INFO - Processed 137400000 reads so far
2011-05-20 11:08:28,124 - INFO - Processed 137500000 reads so far
2011-05-20 11:08:35,244 - INFO - Processed 137600000 reads so far
2011-05-20 11:08:45,675 - INFO - Processed 137700000 reads so far
2011-05-20 11:08:53,482 - INFO - Processed 137800000 reads so far
2011-05-20 11:09:01,764 - INFO - Processed 137900000 reads so far
2011-05-20 11:09:09,321 - INFO - Processed 138000000 reads so far
2011-05-20 11:09:18,828 - INFO - Processed 138100000 reads so far
2011-05-20 11:09:27,574 - INFO - Processed 138200000 reads so far
2011-05-20 11:09:50,941 - INFO - Processed 138300000 reads so far
2011-05-20 11:10:00,751 - INFO - Processed 138400000 reads so far
2011-05-20 11:10:14,980 - INFO - Processed 138500000 reads so far
2011-05-20 11:10:35,856 - INFO - Processed 138600000 reads so far
2011-05-20 11:10:46,120 - INFO - Processed 138700000 reads so far
2011-05-20 11:11:11,599 - INFO - Processed 138800000 reads so far
2011-05-20 11:11:22,634 - INFO - Processed 138900000 reads so far
2011-05-20 11:11:41,791 - INFO - Processed 139000000 reads so far
2011-05-20 11:11:53,371 - INFO - Processed 139100000 reads so far
2011-05-20 11:12:01,306 - INFO - Processed 139200000 reads so far
2011-05-20 11:12:09,132 - INFO - Processed 139300000 reads so far
2011-05-20 11:12:18,883 - INFO - Processed 139400000 reads so far
2011-05-20 11:12:28,436 - INFO - Processed 139500000 reads so far
2011-05-20 11:12:37,495 - INFO - Processed 139600000 reads so far
2011-05-20 11:12:44,877 - INFO - Processed 139700000 reads so far
2011-05-20 11:12:54,234 - INFO - Processed 139800000 reads so far
2011-05-20 11:13:03,542 - INFO - Processed 139900000 reads so far
2011-05-20 11:13:13,015 - INFO - Processed 140000000 reads so far
2011-05-20 11:13:23,854 - INFO - Processed 140100000 reads so far
2011-05-20 11:13:32,381 - INFO - Processed 140200000 reads so far
2011-05-20 11:13:41,033 - INFO - Processed 140300000 reads so far
2011-05-20 11:13:52,203 - INFO - Processed 140400000 reads so far
2011-05-20 11:14:01,791 - INFO - Processed 140500000 reads so far
2011-05-20 11:14:11,224 - INFO - Processed 140600000 reads so far
2011-05-20 11:14:21,258 - INFO - Processed 140700000 reads so far
2011-05-20 11:14:29,876 - INFO - Processed 140800000 reads so far
2011-05-20 11:14:38,759 - INFO - Processed 140900000 reads so far
2011-05-20 11:14:47,379 - INFO - Processed 141000000 reads so far
2011-05-20 11:14:56,136 - INFO - Processed 141100000 reads so far
2011-05-20 11:15:04,750 - INFO - Processed 141200000 reads so far
2011-05-20 11:15:14,222 - INFO - Processed 141300000 reads so far
2011-05-20 11:15:21,547 - INFO - Processed 141400000 reads so far
2011-05-20 11:15:28,337 - INFO - Processed 141500000 reads so far
2011-05-20 11:15:34,872 - INFO - Processed 141600000 reads so far
2011-05-20 11:15:44,709 - INFO - Processed 141700000 reads so far
2011-05-20 11:15:51,676 - INFO - Processed 141800000 reads so far
2011-05-20 11:15:59,474 - INFO - Processed 141900000 reads so far
2011-05-20 11:16:08,043 - INFO - Processed 142000000 reads so far
2011-05-20 11:16:15,990 - INFO - Processed 142100000 reads so far
2011-05-20 11:16:24,830 - INFO - Processed 142200000 reads so far
2011-05-20 11:16:34,506 - INFO - Processed 142300000 reads so far
2011-05-20 11:16:42,882 - INFO - Processed 142400000 reads so far
2011-05-20 11:16:52,147 - INFO - Processed 142500000 reads so far
2011-05-20 11:17:00,304 - INFO - Processed 142600000 reads so far
2011-05-20 11:17:08,360 - INFO - Processed 142700000 reads so far
2011-05-20 11:17:16,651 - INFO - Processed 142800000 reads so far
2011-05-20 11:17:26,325 - INFO - Processed 142900000 reads so far
2011-05-20 11:17:34,441 - INFO - Processed 143000000 reads so far
2011-05-20 11:17:42,389 - INFO - Processed 143100000 reads so far
2011-05-20 11:17:50,330 - INFO - Processed 143200000 reads so far
2011-05-20 11:17:58,749 - INFO - Processed 143300000 reads so far
2011-05-20 11:18:07,720 - INFO - Processed 143400000 reads so far
2011-05-20 11:18:17,073 - INFO - Processed 143500000 reads so far
2011-05-20 11:18:25,131 - INFO - Processed 143600000 reads so far
2011-05-20 11:18:34,095 - INFO - Processed 143700000 reads so far
2011-05-20 11:19:28,371 - INFO - Processed 143800000 reads so far
2011-05-20 11:19:36,500 - INFO - Processed 143900000 reads so far
2011-05-20 11:19:46,222 - INFO - Processed 144000000 reads so far
2011-05-20 11:19:58,023 - INFO - Processed 144100000 reads so far
2011-05-20 11:20:08,289 - INFO - Processed 144200000 reads so far
2011-05-20 11:20:18,966 - INFO - Processed 144300000 reads so far
2011-05-20 11:20:30,559 - INFO - Processed 144400000 reads so far
2011-05-20 11:20:43,385 - INFO - Processed 144500000 reads so far
2011-05-20 11:20:54,122 - INFO - Processed 144600000 reads so far
2011-05-20 11:21:07,466 - INFO - Processed 144700000 reads so far
2011-05-20 11:21:18,708 - INFO - Processed 144800000 reads so far
2011-05-20 11:21:30,633 - INFO - Processed 144900000 reads so far
2011-05-20 11:21:40,608 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:22989939-43009939
2011-05-20 11:21:43,393 - INFO - Processed 145000000 reads so far
2011-05-20 11:21:55,757 - INFO - Processed 145100000 reads so far
2011-05-20 11:22:06,989 - INFO - Processed 145200000 reads so far
2011-05-20 11:22:18,662 - INFO - Processed 145300000 reads so far
2011-05-20 11:22:30,347 - INFO - Processed 145400000 reads so far
2011-05-20 11:22:41,641 - INFO - Processed 145500000 reads so far
2011-05-20 11:22:54,021 - INFO - Processed 145600000 reads so far
2011-05-20 11:23:04,488 - INFO - Processed 145700000 reads so far
2011-05-20 11:23:15,202 - INFO - Processed 145800000 reads so far
2011-05-20 11:23:26,690 - INFO - Processed 145900000 reads so far
2011-05-20 11:23:38,639 - INFO - Processed 146000000 reads so far
2011-05-20 11:23:49,559 - INFO - Processed 146100000 reads so far
2011-05-20 11:24:02,145 - INFO - Processed 146200000 reads so far
2011-05-20 11:24:04,448 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:42989951-63009951
2011-05-20 11:24:13,969 - INFO - Processed 146300000 reads so far
2011-05-20 11:24:26,024 - INFO - Processed 146400000 reads so far
2011-05-20 11:24:36,868 - INFO - Processed 146500000 reads so far
2011-05-20 11:24:48,203 - INFO - Processed 146600000 reads so far
2011-05-20 11:25:00,234 - INFO - Processed 146700000 reads so far
2011-05-20 11:25:13,801 - INFO - Processed 146800000 reads so far
2011-05-20 11:25:25,379 - INFO - Processed 146900000 reads so far
2011-05-20 11:25:43,685 - INFO - Processed 147000000 reads so far
2011-05-20 11:25:54,869 - INFO - Processed 147100000 reads so far
2011-05-20 11:26:06,140 - INFO - Processed 147200000 reads so far
2011-05-20 11:26:17,834 - INFO - Processed 147300000 reads so far
2011-05-20 11:26:17,835 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:62989973-83009973
2011-05-20 11:26:27,983 - INFO - Processed 147400000 reads so far
2011-05-20 11:26:38,773 - INFO - Processed 147500000 reads so far
2011-05-20 11:26:49,841 - INFO - Processed 147600000 reads so far
2011-05-20 11:26:59,863 - INFO - Processed 147700000 reads so far
2011-05-20 11:27:10,551 - INFO - Processed 147800000 reads so far
2011-05-20 11:27:20,946 - INFO - Processed 147900000 reads so far
2011-05-20 11:27:31,857 - INFO - Processed 148000000 reads so far
2011-05-20 11:27:42,774 - INFO - Processed 148100000 reads so far
2011-05-20 11:27:56,163 - INFO - Processed 148200000 reads so far
2011-05-20 11:28:07,744 - INFO - Processed 148300000 reads so far
2011-05-20 11:28:13,546 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:82989974-103009974
2011-05-20 11:28:18,762 - INFO - Processed 148400000 reads so far
2011-05-20 11:28:30,279 - INFO - Processed 148500000 reads so far
2011-05-20 11:28:40,143 - INFO - Processed 148600000 reads so far
2011-05-20 11:28:50,805 - INFO - Processed 148700000 reads so far
2011-05-20 11:29:03,870 - INFO - Processed 148800000 reads so far
2011-05-20 11:29:15,114 - INFO - Processed 148900000 reads so far
2011-05-20 11:29:26,178 - INFO - Processed 149000000 reads so far
2011-05-20 11:29:38,905 - INFO - Processed 149100000 reads so far
2011-05-20 11:29:49,601 - INFO - Processed 149200000 reads so far
2011-05-20 11:30:02,032 - INFO - Processed 149300000 reads so far
2011-05-20 11:30:15,023 - INFO - Processed 149400000 reads so far
2011-05-20 11:30:19,528 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:102989978-123009978
2011-05-20 11:30:28,092 - INFO - Processed 149500000 reads so far
2011-05-20 11:30:39,257 - INFO - Processed 149600000 reads so far
2011-05-20 11:30:50,348 - INFO - Processed 149700000 reads so far
2011-05-20 11:31:01,603 - INFO - Processed 149800000 reads so far
2011-05-20 11:31:11,482 - INFO - Processed 149900000 reads so far
2011-05-20 11:31:22,037 - INFO - Processed 150000000 reads so far
2011-05-20 11:31:34,311 - INFO - Processed 150100000 reads so far
2011-05-20 11:31:46,089 - INFO - Processed 150200000 reads so far
2011-05-20 11:31:58,532 - INFO - Processed 150300000 reads so far
2011-05-20 11:32:09,390 - INFO - Processed 150400000 reads so far
2011-05-20 11:32:20,775 - INFO - Processed 150500000 reads so far
2011-05-20 11:32:23,689 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:122989979-143009979
2011-05-20 11:32:30,617 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9_random:0-20010009
2011-05-20 11:32:32,917 - INFO - Processed 150600000 reads so far
2011-05-20 11:32:34,868 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrM:0-20010000
2011-05-20 11:32:40,982 - INFO - Processed 150700000 reads so far
2011-05-20 11:32:41,893 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrUn_random:0-20010000
2011-05-20 11:32:51,279 - INFO - Processed 150800000 reads so far
2011-05-20 11:33:02,967 - INFO - Processed 150900000 reads so far
2011-05-20 11:33:12,598 - INFO - Processed 151000000 reads so far
2011-05-20 11:33:21,294 - INFO - Processed 151100000 reads so far
2011-05-20 11:33:33,194 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:2990006-23010006
2011-05-20 11:33:33,325 - INFO - Processed 151200000 reads so far
2011-05-20 11:33:40,924 - INFO - Processed 151300000 reads so far
2011-05-20 11:33:51,158 - INFO - Processed 151400000 reads so far
2011-05-20 11:33:59,787 - INFO - Processed 151500000 reads so far
2011-05-20 11:34:17,787 - INFO - Processed 151600000 reads so far
2011-05-20 11:34:35,472 - INFO - Processed 151700000 reads so far
2011-05-20 11:34:48,822 - INFO - Processed 151800000 reads so far
2011-05-20 11:35:00,395 - INFO - Processed 151900000 reads so far
2011-05-20 11:35:12,054 - INFO - Processed 152000000 reads so far
2011-05-20 11:35:23,461 - INFO - Processed 152100000 reads so far
2011-05-20 11:35:35,158 - INFO - Processed 152200000 reads so far
2011-05-20 11:35:46,884 - INFO - Processed 152300000 reads so far
2011-05-20 11:36:01,799 - INFO - Processed 152400000 reads so far
2011-05-20 11:36:10,767 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:22990008-43010008
2011-05-20 11:36:14,739 - INFO - Processed 152500000 reads so far
2011-05-20 11:36:26,925 - INFO - Processed 152600000 reads so far
2011-05-20 11:36:37,731 - INFO - Processed 152700000 reads so far
2011-05-20 11:36:48,799 - INFO - Processed 152800000 reads so far
2011-05-20 11:36:59,236 - INFO - Processed 152900000 reads so far
2011-05-20 11:37:09,622 - INFO - Processed 153000000 reads so far
2011-05-20 11:37:19,950 - INFO - Processed 153100000 reads so far
2011-05-20 11:37:30,789 - INFO - Processed 153200000 reads so far
2011-05-20 11:37:45,584 - INFO - Processed 153300000 reads so far
2011-05-20 11:37:56,631 - INFO - Processed 153400000 reads so far
2011-05-20 11:38:07,352 - INFO - Processed 153500000 reads so far
2011-05-20 11:38:18,854 - INFO - Processed 153600000 reads so far
2011-05-20 11:38:30,374 - INFO - Processed 153700000 reads so far
2011-05-20 11:38:33,470 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:42990018-63010018
2011-05-20 11:38:41,876 - INFO - Processed 153800000 reads so far
2011-05-20 11:38:53,392 - INFO - Processed 153900000 reads so far
2011-05-20 11:39:05,041 - INFO - Processed 154000000 reads so far
2011-05-20 11:39:17,664 - INFO - Processed 154100000 reads so far
2011-05-20 11:39:31,019 - INFO - Processed 154200000 reads so far
2011-05-20 11:39:41,980 - INFO - Processed 154300000 reads so far
2011-05-20 11:39:53,375 - INFO - Processed 154400000 reads so far
2011-05-20 11:40:05,197 - INFO - Processed 154500000 reads so far
2011-05-20 11:40:16,830 - INFO - Processed 154600000 reads so far
2011-05-20 11:40:29,163 - INFO - Processed 154700000 reads so far
2011-05-20 11:40:45,608 - INFO - Processed 154800000 reads so far
2011-05-20 11:40:49,297 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:62990044-83010044
2011-05-20 11:40:58,223 - INFO - Processed 154900000 reads so far
2011-05-20 11:41:09,207 - INFO - Processed 155000000 reads so far
2011-05-20 11:41:20,032 - INFO - Processed 155100000 reads so far
2011-05-20 11:41:31,641 - INFO - Processed 155200000 reads so far
2011-05-20 11:41:42,831 - INFO - Processed 155300000 reads so far
2011-05-20 11:41:55,656 - INFO - Processed 155400000 reads so far
2011-05-20 11:42:06,793 - INFO - Processed 155500000 reads so far
2011-05-20 11:42:17,700 - INFO - Processed 155600000 reads so far
2011-05-20 11:42:29,737 - INFO - Processed 155700000 reads so far
2011-05-20 11:42:41,331 - INFO - Processed 155800000 reads so far
2011-05-20 11:42:52,998 - INFO - Processed 155900000 reads so far
2011-05-20 11:42:53,983 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:82990073-103010073
2011-05-20 11:43:04,671 - INFO - Processed 156000000 reads so far
2011-05-20 11:43:16,688 - INFO - Processed 156100000 reads so far
2011-05-20 11:43:28,157 - INFO - Processed 156200000 reads so far
2011-05-20 11:43:39,649 - INFO - Processed 156300000 reads so far
2011-05-20 11:43:50,534 - INFO - Processed 156400000 reads so far
2011-05-20 11:44:01,000 - INFO - Processed 156500000 reads so far
2011-05-20 11:44:10,882 - INFO - Processed 156600000 reads so far
2011-05-20 11:44:22,374 - INFO - Processed 156700000 reads so far
2011-05-20 11:44:33,487 - INFO - Processed 156800000 reads so far
2011-05-20 11:44:46,581 - INFO - Processed 156900000 reads so far
2011-05-20 11:44:53,247 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:102990097-123010097
2011-05-20 11:44:56,138 - INFO - Processed 157000000 reads so far
2011-05-20 11:45:06,863 - INFO - Processed 157100000 reads so far
2011-05-20 11:45:17,571 - INFO - Processed 157200000 reads so far
2011-05-20 11:45:28,310 - INFO - Processed 157300000 reads so far
2011-05-20 11:45:37,300 - INFO - Processed 157400000 reads so far
2011-05-20 11:45:46,767 - INFO - Processed 157500000 reads so far
2011-05-20 11:45:56,306 - INFO - Processed 157600000 reads so far
2011-05-20 11:46:04,639 - INFO - Processed 157700000 reads so far
2011-05-20 11:46:14,866 - INFO - Processed 157800000 reads so far
2011-05-20 11:46:29,773 - INFO - Processed 157900000 reads so far
2011-05-20 11:46:39,810 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:122990101-143010101
2011-05-20 11:46:40,563 - INFO - Processed 158000000 reads so far
2011-05-20 11:46:50,296 - INFO - Processed 158100000 reads so far
2011-05-20 11:47:03,024 - INFO - Processed 158200000 reads so far
2011-05-20 11:47:13,699 - INFO - Processed 158300000 reads so far
2011-05-20 11:47:22,328 - INFO - Processed 158400000 reads so far
2011-05-20 11:47:31,600 - INFO - Processed 158500000 reads so far
2011-05-20 11:47:45,400 - INFO - Processed 158600000 reads so far
2011-05-20 11:47:57,858 - INFO - Processed 158700000 reads so far
2011-05-20 11:48:09,799 - INFO - Processed 158800000 reads so far
2011-05-20 11:48:23,223 - INFO - Processed 158900000 reads so far
2011-05-20 11:48:33,235 - INFO - Processed 159000000 reads so far
2011-05-20 11:48:44,705 - INFO - Processed 159100000 reads so far
2011-05-20 11:48:49,525 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:142990181-163010181
2011-05-20 11:48:56,258 - INFO - Processed 159200000 reads so far
2011-05-20 11:49:09,116 - INFO - Processed 159300000 reads so far
2011-05-20 11:49:20,940 - INFO - Processed 159400000 reads so far
2011-05-20 11:49:32,641 - INFO - Processed 159500000 reads so far
2011-05-20 11:49:43,976 - INFO - Processed 159600000 reads so far
2011-05-20 11:49:56,904 - INFO - Processed 159700000 reads so far
2011-05-20 11:50:08,540 - INFO - Processed 159800000 reads so far
2011-05-20 11:50:20,227 - INFO - Processed 159900000 reads so far
2011-05-20 11:50:31,772 - INFO - Processed 160000000 reads so far
2011-05-20 11:50:43,377 - INFO - Processed 160100000 reads so far
2011-05-20 11:50:55,451 - INFO - Processed 160200000 reads so far
2011-05-20 11:50:55,653 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:162990207-183010207
2011-05-20 11:51:06,125 - INFO - Processed 160300000 reads so far
2011-05-20 11:51:18,532 - INFO - Processed 160400000 reads so far
2011-05-20 11:51:29,420 - INFO - Processed 160500000 reads so far
2011-05-20 11:51:30,217 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX_random:0-20010024
2011-05-20 11:51:38,035 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY:0-20016030
2011-05-20 11:51:39,497 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:49750-20069750
2011-05-20 11:51:40,642 - INFO - Processed 160600000 reads so far
2011-05-20 11:51:42,359 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:20189069-40209069
2011-05-20 11:51:44,353 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:40195555-60215555
2011-05-20 11:51:51,444 - INFO - Processed 160700000 reads so far
2011-05-20 11:51:57,580 - INFO - Processed 160800000 reads so far
2011-05-20 11:52:02,457 - INFO - Processed 160900000 reads so far
2011-05-20 11:52:08,478 - INFO - Processed 161000000 reads so far
2011-05-20 11:52:13,569 - INFO - Processed 161100000 reads so far
2011-05-20 11:52:18,756 - INFO - Processed 161200000 reads so far
2011-05-20 11:52:24,006 - INFO - Processed 161300000 reads so far
2011-05-20 11:52:30,230 - INFO - Processed 161400000 reads so far
2011-05-20 11:52:34,811 - INFO - Processed 161500000 reads so far
2011-05-20 11:52:42,041 - INFO - Processed 161600000 reads so far
2011-05-20 11:52:47,170 - INFO - Processed 161700000 reads so far
2011-05-20 11:52:53,611 - INFO - Processed 161800000 reads so far
2011-05-20 11:53:00,025 - INFO - Processed 161900000 reads so far
2011-05-20 11:53:07,047 - INFO - Processed 162000000 reads so far
2011-05-20 11:53:13,444 - INFO - Processed 162100000 reads so far
2011-05-20 11:53:16,731 - INFO - Finished loading data. Outputting QC metrics
2011-05-20 11:53:41,602 - INFO - Finished outputting QC metrics
2011-05-20 11:53:41,714 - INFO - Finished generating QC metrics