2011-05-19 21:17:27,718 - INFO - Generating QC metrics for BAM File ['WTCHG_11824.bam']
2011-05-19 21:17:27,718 - INFO - Output will go to WTCHG_11824.qc.txt.tmp
2011-05-19 21:17:27,718 - INFO - Reading GC Map from file /data/Genomes/gcMap/Mouse37.gcMap.gz
2011-05-19 21:20:22,378 - INFO - Finished reading GC Map
2011-05-19 21:20:22,378 - INFO - Reading CDS from exon definition file /data/Genomes/annotation/Mouse37.refGene.txt.gz
2011-05-19 21:20:25,499 - INFO - Read 382138 exons (33804740 nucleotides) for 32 chromosomes
2011-05-19 21:20:25,500 - INFO - Computing coverage cut-off
2011-05-19 21:20:25,500 - INFO - Retrieving BAM file coverage info from samtools pileup
2011-05-19 21:20:30,016 - INFO - Processed 1000000 pile-up sites
2011-05-19 21:20:38,188 - INFO - Processed 2000000 pile-up sites
2011-05-19 21:20:43,384 - INFO - Processed 3000000 pile-up sites
2011-05-19 21:20:48,027 - INFO - Processed 4000000 pile-up sites
2011-05-19 21:20:53,006 - INFO - Processed 5000000 pile-up sites
2011-05-19 21:20:55,546 - INFO - Processed 6000000 pile-up sites
2011-05-19 21:20:58,151 - INFO - Processed 7000000 pile-up sites
2011-05-19 21:21:02,599 - INFO - Processed 8000000 pile-up sites
2011-05-19 21:21:05,227 - INFO - Processed 9000000 pile-up sites
2011-05-19 21:21:07,763 - INFO - Processed 10000000 pile-up sites
2011-05-19 21:21:10,329 - INFO - Processed 11000000 pile-up sites
2011-05-19 21:21:14,362 - INFO - Processed 12000000 pile-up sites
2011-05-19 21:21:19,731 - INFO - Processed 13000000 pile-up sites
2011-05-19 21:21:24,563 - INFO - Processed 14000000 pile-up sites
2011-05-19 21:21:29,509 - INFO - Processed 15000000 pile-up sites
2011-05-19 21:21:33,928 - INFO - Processed 16000000 pile-up sites
2011-05-19 21:21:36,538 - INFO - Processed 17000000 pile-up sites
2011-05-19 21:21:39,169 - INFO - Processed 18000000 pile-up sites
2011-05-19 21:21:43,370 - INFO - Processed 19000000 pile-up sites
2011-05-19 21:21:48,187 - INFO - Processed 20000000 pile-up sites
2011-05-19 21:21:53,081 - INFO - Processed 21000000 pile-up sites
2011-05-19 21:21:57,705 - INFO - Processed 22000000 pile-up sites
2011-05-19 21:22:05,165 - INFO - Processed 23000000 pile-up sites
2011-05-19 21:22:09,425 - INFO - Processed 24000000 pile-up sites
2011-05-19 21:22:14,011 - INFO - Processed 25000000 pile-up sites
2011-05-19 21:22:16,920 - INFO - Processed 26000000 pile-up sites
2011-05-19 21:22:19,270 - INFO - Processed 27000000 pile-up sites
2011-05-19 21:22:21,786 - INFO - Processed 28000000 pile-up sites
2011-05-19 21:22:24,099 - INFO - Processed 29000000 pile-up sites
2011-05-19 21:22:27,537 - INFO - Processed 30000000 pile-up sites
2011-05-19 21:22:33,002 - INFO - Processed 31000000 pile-up sites
2011-05-19 21:22:35,309 - INFO - Processed 32000000 pile-up sites
2011-05-19 21:22:38,974 - INFO - Processed 33000000 pile-up sites
2011-05-19 21:22:43,427 - INFO - Processed 34000000 pile-up sites
2011-05-19 21:22:48,499 - INFO - Processed 35000000 pile-up sites
2011-05-19 21:22:52,936 - INFO - Processed 36000000 pile-up sites
2011-05-19 21:22:57,416 - INFO - Processed 37000000 pile-up sites
2011-05-19 21:23:02,047 - INFO - Processed 38000000 pile-up sites
2011-05-19 21:23:05,949 - INFO - Finished processing pile-up on 38850317 sites (200000010 nucleotides)
2011-05-19 21:23:05,949 - INFO - Coverage cut-off value is 23
2011-05-19 21:23:05,949 - INFO - Loading data into QC data manager
2011-05-19 21:23:06,189 - INFO - Reading data from BAM file WTCHG_11824.bam. All reads in file will be read
2011-05-19 21:23:06,233 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:2989999-23009999
2011-05-19 21:23:17,596 - INFO - Processed 100000 reads so far
2011-05-19 21:23:29,925 - INFO - Processed 200000 reads so far
2011-05-19 21:23:42,272 - INFO - Processed 300000 reads so far
2011-05-19 21:23:54,382 - INFO - Processed 400000 reads so far
2011-05-19 21:24:06,003 - INFO - Processed 500000 reads so far
2011-05-19 21:24:17,597 - INFO - Processed 600000 reads so far
2011-05-19 21:24:28,957 - INFO - Processed 700000 reads so far
2011-05-19 21:24:40,616 - INFO - Processed 800000 reads so far
2011-05-19 21:24:51,756 - INFO - Processed 900000 reads so far
2011-05-19 21:25:03,568 - INFO - Processed 1000000 reads so far
2011-05-19 21:25:04,752 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:22990013-43010013
2011-05-19 21:25:15,921 - INFO - Processed 1100000 reads so far
2011-05-19 21:25:28,147 - INFO - Processed 1200000 reads so far
2011-05-19 21:25:39,040 - INFO - Processed 1300000 reads so far
2011-05-19 21:25:50,401 - INFO - Processed 1400000 reads so far
2011-05-19 21:26:03,464 - INFO - Processed 1500000 reads so far
2011-05-19 21:26:15,708 - INFO - Processed 1600000 reads so far
2011-05-19 21:26:27,207 - INFO - Processed 1700000 reads so far
2011-05-19 21:26:37,729 - INFO - Processed 1800000 reads so far
2011-05-19 21:26:49,590 - INFO - Processed 1900000 reads so far
2011-05-19 21:26:58,292 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:42990019-63010019
2011-05-19 21:27:00,900 - INFO - Processed 2000000 reads so far
2011-05-19 21:27:12,180 - INFO - Processed 2100000 reads so far
2011-05-19 21:27:23,709 - INFO - Processed 2200000 reads so far
2011-05-19 21:27:35,044 - INFO - Processed 2300000 reads so far
2011-05-19 21:27:46,323 - INFO - Processed 2400000 reads so far
2011-05-19 21:27:55,613 - INFO - Processed 2500000 reads so far
2011-05-19 21:28:06,562 - INFO - Processed 2600000 reads so far
2011-05-19 21:28:17,271 - INFO - Processed 2700000 reads so far
2011-05-19 21:28:28,680 - INFO - Processed 2800000 reads so far
2011-05-19 21:28:40,216 - INFO - Processed 2900000 reads so far
2011-05-19 21:28:47,995 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:62990023-83010023
2011-05-19 21:28:52,003 - INFO - Processed 3000000 reads so far
2011-05-19 21:29:04,655 - INFO - Processed 3100000 reads so far
2011-05-19 21:29:15,815 - INFO - Processed 3200000 reads so far
2011-05-19 21:29:30,757 - INFO - Processed 3300000 reads so far
2011-05-19 21:29:42,588 - INFO - Processed 3400000 reads so far
2011-05-19 21:29:54,889 - INFO - Processed 3500000 reads so far
2011-05-19 21:30:06,872 - INFO - Processed 3600000 reads so far
2011-05-19 21:30:17,980 - INFO - Processed 3700000 reads so far
2011-05-19 21:30:27,544 - INFO - Processed 3800000 reads so far
2011-05-19 21:30:38,686 - INFO - Processed 3900000 reads so far
2011-05-19 21:30:48,437 - INFO - Processed 4000000 reads so far
2011-05-19 21:30:50,175 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:82990039-103010039
2011-05-19 21:30:57,801 - INFO - Processed 4100000 reads so far
2011-05-19 21:31:11,405 - INFO - Processed 4200000 reads so far
2011-05-19 21:31:23,404 - INFO - Processed 4300000 reads so far
2011-05-19 21:31:34,088 - INFO - Processed 4400000 reads so far
2011-05-19 21:31:47,197 - INFO - Processed 4500000 reads so far
2011-05-19 21:31:58,308 - INFO - Processed 4600000 reads so far
2011-05-19 21:32:09,130 - INFO - Processed 4700000 reads so far
2011-05-19 21:32:25,186 - INFO - Processed 4800000 reads so far
2011-05-19 21:32:36,327 - INFO - Processed 4900000 reads so far
2011-05-19 21:32:47,069 - INFO - Processed 5000000 reads so far
2011-05-19 21:32:50,439 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:102990079-123010079
2011-05-19 21:32:58,092 - INFO - Processed 5100000 reads so far
2011-05-19 21:33:08,073 - INFO - Processed 5200000 reads so far
2011-05-19 21:33:18,107 - INFO - Processed 5300000 reads so far
2011-05-19 21:33:30,952 - INFO - Processed 5400000 reads so far
2011-05-19 21:33:41,768 - INFO - Processed 5500000 reads so far
2011-05-19 21:33:53,699 - INFO - Processed 5600000 reads so far
2011-05-19 21:34:03,135 - INFO - Processed 5700000 reads so far
2011-05-19 21:34:17,014 - INFO - Processed 5800000 reads so far
2011-05-19 21:34:33,190 - INFO - Processed 5900000 reads so far
2011-05-19 21:34:49,355 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:122990081-143010081
2011-05-19 21:34:50,018 - INFO - Processed 6000000 reads so far
2011-05-19 21:35:01,681 - INFO - Processed 6100000 reads so far
2011-05-19 21:35:14,413 - INFO - Processed 6200000 reads so far
2011-05-19 21:35:26,980 - INFO - Processed 6300000 reads so far
2011-05-19 21:35:31,481 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:2990003-23010003
2011-05-19 21:35:38,111 - INFO - Processed 6400000 reads so far
2011-05-19 21:35:48,868 - INFO - Processed 6500000 reads so far
2011-05-19 21:36:04,223 - INFO - Processed 6600000 reads so far
2011-05-19 21:36:15,590 - INFO - Processed 6700000 reads so far
2011-05-19 21:36:26,888 - INFO - Processed 6800000 reads so far
2011-05-19 21:36:38,585 - INFO - Processed 6900000 reads so far
2011-05-19 21:36:50,415 - INFO - Processed 7000000 reads so far
2011-05-19 21:37:02,492 - INFO - Processed 7100000 reads so far
2011-05-19 21:37:15,370 - INFO - Processed 7200000 reads so far
2011-05-19 21:37:26,609 - INFO - Processed 7300000 reads so far
2011-05-19 21:37:39,116 - INFO - Processed 7400000 reads so far
2011-05-19 21:37:51,575 - INFO - Processed 7500000 reads so far
2011-05-19 21:37:54,595 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:22990007-43010007
2011-05-19 21:38:02,928 - INFO - Processed 7600000 reads so far
2011-05-19 21:38:12,670 - INFO - Processed 7700000 reads so far
2011-05-19 21:38:23,935 - INFO - Processed 7800000 reads so far
2011-05-19 21:38:35,818 - INFO - Processed 7900000 reads so far
2011-05-19 21:38:45,553 - INFO - Processed 8000000 reads so far
2011-05-19 21:38:56,580 - INFO - Processed 8100000 reads so far
2011-05-19 21:39:07,762 - INFO - Processed 8200000 reads so far
2011-05-19 21:39:20,361 - INFO - Processed 8300000 reads so far
2011-05-19 21:39:32,150 - INFO - Processed 8400000 reads so far
2011-05-19 21:39:43,919 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:42990046-63010046
2011-05-19 21:39:44,059 - INFO - Processed 8500000 reads so far
2011-05-19 21:39:55,186 - INFO - Processed 8600000 reads so far
2011-05-19 21:40:05,951 - INFO - Processed 8700000 reads so far
2011-05-19 21:40:17,740 - INFO - Processed 8800000 reads so far
2011-05-19 21:40:27,354 - INFO - Processed 8900000 reads so far
2011-05-19 21:40:39,490 - INFO - Processed 9000000 reads so far
2011-05-19 21:40:50,085 - INFO - Processed 9100000 reads so far
2011-05-19 21:41:02,709 - INFO - Processed 9200000 reads so far
2011-05-19 21:41:14,310 - INFO - Processed 9300000 reads so far
2011-05-19 21:41:28,103 - INFO - Processed 9400000 reads so far
2011-05-19 21:41:39,266 - INFO - Processed 9500000 reads so far
2011-05-19 21:41:50,492 - INFO - Processed 9600000 reads so far
2011-05-19 21:41:51,336 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:62990112-83010112
2011-05-19 21:42:01,724 - INFO - Processed 9700000 reads so far
2011-05-19 21:42:12,740 - INFO - Processed 9800000 reads so far
2011-05-19 21:42:23,356 - INFO - Processed 9900000 reads so far
2011-05-19 21:42:34,957 - INFO - Processed 10000000 reads so far
2011-05-19 21:42:45,347 - INFO - Processed 10100000 reads so far
2011-05-19 21:42:56,622 - INFO - Processed 10200000 reads so far
2011-05-19 21:43:06,485 - INFO - Processed 10300000 reads so far
2011-05-19 21:43:14,204 - INFO - Processed 10400000 reads so far
2011-05-19 21:43:23,462 - INFO - Processed 10500000 reads so far
2011-05-19 21:43:31,865 - INFO - Processed 10600000 reads so far
2011-05-19 21:43:40,427 - INFO - Processed 10700000 reads so far
2011-05-19 21:43:41,328 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:82990133-103010133
2011-05-19 21:43:49,921 - INFO - Processed 10800000 reads so far
2011-05-19 21:43:59,574 - INFO - Processed 10900000 reads so far
2011-05-19 21:44:10,150 - INFO - Processed 11000000 reads so far
2011-05-19 21:44:18,823 - INFO - Processed 11100000 reads so far
2011-05-19 21:44:26,707 - INFO - Processed 11200000 reads so far
2011-05-19 21:44:34,850 - INFO - Processed 11300000 reads so far
2011-05-19 21:44:45,141 - INFO - Processed 11400000 reads so far
2011-05-19 21:44:54,569 - INFO - Processed 11500000 reads so far
2011-05-19 21:45:04,937 - INFO - Processed 11600000 reads so far
2011-05-19 21:45:16,481 - INFO - Processed 11700000 reads so far
2011-05-19 21:45:24,538 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:102990134-123010134
2011-05-19 21:45:27,745 - INFO - Processed 11800000 reads so far
2011-05-19 21:45:37,574 - INFO - Processed 11900000 reads so far
2011-05-19 21:45:48,154 - INFO - Processed 12000000 reads so far
2011-05-19 21:46:00,121 - INFO - Processed 12100000 reads so far
2011-05-19 21:46:08,897 - INFO - Processed 12200000 reads so far
2011-05-19 21:46:19,573 - INFO - Processed 12300000 reads so far
2011-05-19 21:46:30,472 - INFO - Processed 12400000 reads so far
2011-05-19 21:46:42,261 - INFO - Processed 12500000 reads so far
2011-05-19 21:46:53,988 - INFO - Processed 12600000 reads so far
2011-05-19 21:47:04,494 - INFO - Processed 12700000 reads so far
2011-05-19 21:47:17,512 - INFO - Processed 12800000 reads so far
2011-05-19 21:47:23,298 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:2990003-23010003
2011-05-19 21:47:27,841 - INFO - Processed 12900000 reads so far
2011-05-19 21:47:38,081 - INFO - Processed 13000000 reads so far
2011-05-19 21:47:49,340 - INFO - Processed 13100000 reads so far
2011-05-19 21:47:59,934 - INFO - Processed 13200000 reads so far
2011-05-19 21:48:11,039 - INFO - Processed 13300000 reads so far
2011-05-19 21:48:20,727 - INFO - Processed 13400000 reads so far
2011-05-19 21:48:30,254 - INFO - Processed 13500000 reads so far
2011-05-19 21:48:41,040 - INFO - Processed 13600000 reads so far
2011-05-19 21:48:51,855 - INFO - Processed 13700000 reads so far
2011-05-19 21:49:00,481 - INFO - Processed 13800000 reads so far
2011-05-19 21:49:12,966 - INFO - Processed 13900000 reads so far
2011-05-19 21:49:20,085 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:22990193-43010193
2011-05-19 21:49:24,342 - INFO - Processed 14000000 reads so far
2011-05-19 21:49:34,229 - INFO - Processed 14100000 reads so far
2011-05-19 21:49:45,627 - INFO - Processed 14200000 reads so far
2011-05-19 21:49:57,807 - INFO - Processed 14300000 reads so far
2011-05-19 21:50:09,109 - INFO - Processed 14400000 reads so far
2011-05-19 21:50:20,605 - INFO - Processed 14500000 reads so far
2011-05-19 21:50:32,051 - INFO - Processed 14600000 reads so far
2011-05-19 21:50:43,278 - INFO - Processed 14700000 reads so far
2011-05-19 21:50:55,808 - INFO - Processed 14800000 reads so far
2011-05-19 21:51:04,169 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:42990212-63010212
2011-05-19 21:51:05,032 - INFO - Processed 14900000 reads so far
2011-05-19 21:51:15,952 - INFO - Processed 15000000 reads so far
2011-05-19 21:51:27,113 - INFO - Processed 15100000 reads so far
2011-05-19 21:51:38,062 - INFO - Processed 15200000 reads so far
2011-05-19 21:51:48,589 - INFO - Processed 15300000 reads so far
2011-05-19 21:52:00,706 - INFO - Processed 15400000 reads so far
2011-05-19 21:52:10,010 - INFO - Processed 15500000 reads so far
2011-05-19 21:52:18,919 - INFO - Processed 15600000 reads so far
2011-05-19 21:52:29,025 - INFO - Processed 15700000 reads so far
2011-05-19 21:52:41,234 - INFO - Processed 15800000 reads so far
2011-05-19 21:52:42,478 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:62990265-83010265
2011-05-19 21:52:52,878 - INFO - Processed 15900000 reads so far
2011-05-19 21:53:04,398 - INFO - Processed 16000000 reads so far
2011-05-19 21:53:14,055 - INFO - Processed 16100000 reads so far
2011-05-19 21:53:24,502 - INFO - Processed 16200000 reads so far
2011-05-19 21:53:32,475 - INFO - Processed 16300000 reads so far
2011-05-19 21:53:42,436 - INFO - Processed 16400000 reads so far
2011-05-19 21:53:52,356 - INFO - Processed 16500000 reads so far
2011-05-19 21:54:02,541 - INFO - Processed 16600000 reads so far
2011-05-19 21:54:11,581 - INFO - Processed 16700000 reads so far
2011-05-19 21:54:20,210 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:82990334-103010334
2011-05-19 21:54:21,409 - INFO - Processed 16800000 reads so far
2011-05-19 21:54:29,491 - INFO - Processed 16900000 reads so far
2011-05-19 21:54:39,645 - INFO - Processed 17000000 reads so far
2011-05-19 21:54:47,351 - INFO - Processed 17100000 reads so far
2011-05-19 21:54:55,251 - INFO - Processed 17200000 reads so far
2011-05-19 21:55:03,912 - INFO - Processed 17300000 reads so far
2011-05-19 21:55:12,009 - INFO - Processed 17400000 reads so far
2011-05-19 21:55:22,046 - INFO - Processed 17500000 reads so far
2011-05-19 21:55:31,308 - INFO - Processed 17600000 reads so far
2011-05-19 21:55:42,460 - INFO - Processed 17700000 reads so far
2011-05-19 21:55:50,627 - INFO - Processed 17800000 reads so far
2011-05-19 21:55:50,829 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:102990340-123010340
2011-05-19 21:55:58,637 - INFO - Processed 17900000 reads so far
2011-05-19 21:56:08,646 - INFO - Processed 18000000 reads so far
2011-05-19 21:56:16,982 - INFO - Processed 18100000 reads so far
2011-05-19 21:56:26,079 - INFO - Processed 18200000 reads so far
2011-05-19 21:56:37,213 - INFO - Processed 18300000 reads so far
2011-05-19 21:56:47,744 - INFO - Processed 18400000 reads so far
2011-05-19 21:56:57,334 - INFO - Processed 18500000 reads so far
2011-05-19 21:57:05,836 - INFO - Processed 18600000 reads so far
2011-05-19 21:57:13,908 - INFO - Processed 18700000 reads so far
2011-05-19 21:57:24,009 - INFO - Processed 18800000 reads so far
2011-05-19 21:57:32,019 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:2990047-23010047
2011-05-19 21:57:34,504 - INFO - Processed 18900000 reads so far
2011-05-19 21:57:44,901 - INFO - Processed 19000000 reads so far
2011-05-19 21:57:57,201 - INFO - Processed 19100000 reads so far
2011-05-19 21:58:05,005 - INFO - Processed 19200000 reads so far
2011-05-19 21:58:14,174 - INFO - Processed 19300000 reads so far
2011-05-19 21:58:23,194 - INFO - Processed 19400000 reads so far
2011-05-19 21:58:32,433 - INFO - Processed 19500000 reads so far
2011-05-19 21:58:41,759 - INFO - Processed 19600000 reads so far
2011-05-19 21:58:50,763 - INFO - Processed 19700000 reads so far
2011-05-19 21:58:59,117 - INFO - Processed 19800000 reads so far
2011-05-19 21:59:00,910 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:22990052-43010052
2011-05-19 21:59:07,832 - INFO - Processed 19900000 reads so far
2011-05-19 21:59:16,721 - INFO - Processed 20000000 reads so far
2011-05-19 21:59:27,511 - INFO - Processed 20100000 reads so far
2011-05-19 21:59:37,533 - INFO - Processed 20200000 reads so far
2011-05-19 21:59:45,979 - INFO - Processed 20300000 reads so far
2011-05-19 21:59:57,393 - INFO - Processed 20400000 reads so far
2011-05-19 22:00:10,016 - INFO - Processed 20500000 reads so far
2011-05-19 22:00:24,332 - INFO - Processed 20600000 reads so far
2011-05-19 22:00:36,537 - INFO - Processed 20700000 reads so far
2011-05-19 22:00:49,871 - INFO - Processed 20800000 reads so far
2011-05-19 22:00:56,329 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:42990062-63010062
2011-05-19 22:01:01,204 - INFO - Processed 20900000 reads so far
2011-05-19 22:01:11,057 - INFO - Processed 21000000 reads so far
2011-05-19 22:01:20,044 - INFO - Processed 21100000 reads so far
2011-05-19 22:01:32,996 - INFO - Processed 21200000 reads so far
2011-05-19 22:01:42,499 - INFO - Processed 21300000 reads so far
2011-05-19 22:01:53,195 - INFO - Processed 21400000 reads so far
2011-05-19 22:02:04,847 - INFO - Processed 21500000 reads so far
2011-05-19 22:02:16,346 - INFO - Processed 21600000 reads so far
2011-05-19 22:02:27,737 - INFO - Processed 21700000 reads so far
2011-05-19 22:02:39,078 - INFO - Processed 21800000 reads so far
2011-05-19 22:02:52,071 - INFO - Processed 21900000 reads so far
2011-05-19 22:03:00,371 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:62990073-83010073
2011-05-19 22:03:03,560 - INFO - Processed 22000000 reads so far
2011-05-19 22:03:14,994 - INFO - Processed 22100000 reads so far
2011-05-19 22:03:26,200 - INFO - Processed 22200000 reads so far
2011-05-19 22:03:39,488 - INFO - Processed 22300000 reads so far
2011-05-19 22:03:50,700 - INFO - Processed 22400000 reads so far
2011-05-19 22:04:00,710 - INFO - Processed 22500000 reads so far
2011-05-19 22:04:11,422 - INFO - Processed 22600000 reads so far
2011-05-19 22:04:21,594 - INFO - Processed 22700000 reads so far
2011-05-19 22:04:31,491 - INFO - Processed 22800000 reads so far
2011-05-19 22:04:43,047 - INFO - Processed 22900000 reads so far
2011-05-19 22:04:51,446 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:82990098-103010098
2011-05-19 22:04:53,680 - INFO - Processed 23000000 reads so far
2011-05-19 22:05:05,118 - INFO - Processed 23100000 reads so far
2011-05-19 22:05:14,893 - INFO - Processed 23200000 reads so far
2011-05-19 22:05:22,962 - INFO - Processed 23300000 reads so far
2011-05-19 22:05:35,246 - INFO - Processed 23400000 reads so far
2011-05-19 22:05:46,016 - INFO - Processed 23500000 reads so far
2011-05-19 22:05:57,311 - INFO - Processed 23600000 reads so far
2011-05-19 22:06:08,631 - INFO - Processed 23700000 reads so far
2011-05-19 22:06:19,865 - INFO - Processed 23800000 reads so far
2011-05-19 22:06:31,402 - INFO - Processed 23900000 reads so far
2011-05-19 22:06:34,241 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:102990114-123010114
2011-05-19 22:06:42,242 - INFO - Processed 24000000 reads so far
2011-05-19 22:06:53,636 - INFO - Processed 24100000 reads so far
2011-05-19 22:07:06,334 - INFO - Processed 24200000 reads so far
2011-05-19 22:07:18,091 - INFO - Processed 24300000 reads so far
2011-05-19 22:07:27,766 - INFO - Processed 24400000 reads so far
2011-05-19 22:07:40,536 - INFO - Processed 24500000 reads so far
2011-05-19 22:07:51,510 - INFO - Processed 24600000 reads so far
2011-05-19 22:08:02,587 - INFO - Processed 24700000 reads so far
2011-05-19 22:08:10,694 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13_random:0-20010000
2011-05-19 22:08:11,927 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:2990097-23010097
2011-05-19 22:08:14,324 - INFO - Processed 24800000 reads so far
2011-05-19 22:08:25,745 - INFO - Processed 24900000 reads so far
2011-05-19 22:08:37,571 - INFO - Processed 25000000 reads so far
2011-05-19 22:08:48,802 - INFO - Processed 25100000 reads so far
2011-05-19 22:08:59,972 - INFO - Processed 25200000 reads so far
2011-05-19 22:09:15,787 - INFO - Processed 25300000 reads so far
2011-05-19 22:09:42,846 - INFO - Processed 25400000 reads so far
2011-05-19 22:09:54,187 - INFO - Processed 25500000 reads so far
2011-05-19 22:10:05,224 - INFO - Processed 25600000 reads so far
2011-05-19 22:10:16,100 - INFO - Processed 25700000 reads so far
2011-05-19 22:10:23,142 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:22990102-43010102
2011-05-19 22:10:26,846 - INFO - Processed 25800000 reads so far
2011-05-19 22:10:36,636 - INFO - Processed 25900000 reads so far
2011-05-19 22:10:47,597 - INFO - Processed 26000000 reads so far
2011-05-19 22:10:56,946 - INFO - Processed 26100000 reads so far
2011-05-19 22:11:05,748 - INFO - Processed 26200000 reads so far
2011-05-19 22:11:17,204 - INFO - Processed 26300000 reads so far
2011-05-19 22:11:27,648 - INFO - Processed 26400000 reads so far
2011-05-19 22:11:38,798 - INFO - Processed 26500000 reads so far
2011-05-19 22:11:49,490 - INFO - Processed 26600000 reads so far
2011-05-19 22:11:59,462 - INFO - Processed 26700000 reads so far
2011-05-19 22:12:10,729 - INFO - Processed 26800000 reads so far
2011-05-19 22:12:12,182 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:42990153-63010153
2011-05-19 22:12:21,694 - INFO - Processed 26900000 reads so far
2011-05-19 22:12:32,786 - INFO - Processed 27000000 reads so far
2011-05-19 22:12:42,667 - INFO - Processed 27100000 reads so far
2011-05-19 22:12:52,476 - INFO - Processed 27200000 reads so far
2011-05-19 22:13:03,316 - INFO - Processed 27300000 reads so far
2011-05-19 22:13:17,507 - INFO - Processed 27400000 reads so far
2011-05-19 22:13:29,398 - INFO - Processed 27500000 reads so far
2011-05-19 22:13:38,342 - INFO - Processed 27600000 reads so far
2011-05-19 22:13:48,556 - INFO - Processed 27700000 reads so far
2011-05-19 22:14:00,179 - INFO - Processed 27800000 reads so far
2011-05-19 22:14:10,132 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:62990181-83010181
2011-05-19 22:14:10,572 - INFO - Processed 27900000 reads so far
2011-05-19 22:14:20,298 - INFO - Processed 28000000 reads so far
2011-05-19 22:14:31,847 - INFO - Processed 28100000 reads so far
2011-05-19 22:14:43,166 - INFO - Processed 28200000 reads so far
2011-05-19 22:14:53,480 - INFO - Processed 28300000 reads so far
2011-05-19 22:15:02,183 - INFO - Processed 28400000 reads so far
2011-05-19 22:15:12,568 - INFO - Processed 28500000 reads so far
2011-05-19 22:15:22,802 - INFO - Processed 28600000 reads so far
2011-05-19 22:15:30,775 - INFO - Processed 28700000 reads so far
2011-05-19 22:15:41,041 - INFO - Processed 28800000 reads so far
2011-05-19 22:15:53,373 - INFO - Processed 28900000 reads so far
2011-05-19 22:15:59,692 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:82990283-103010283
2011-05-19 22:16:04,919 - INFO - Processed 29000000 reads so far
2011-05-19 22:16:16,443 - INFO - Processed 29100000 reads so far
2011-05-19 22:16:29,164 - INFO - Processed 29200000 reads so far
2011-05-19 22:16:37,706 - INFO - Processed 29300000 reads so far
2011-05-19 22:16:47,795 - INFO - Processed 29400000 reads so far
2011-05-19 22:16:59,916 - INFO - Processed 29500000 reads so far
2011-05-19 22:17:10,703 - INFO - Processed 29600000 reads so far
2011-05-19 22:17:21,512 - INFO - Processed 29700000 reads so far
2011-05-19 22:17:33,049 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:102990295-123010295
2011-05-19 22:17:33,359 - INFO - Processed 29800000 reads so far
2011-05-19 22:17:44,093 - INFO - Processed 29900000 reads so far
2011-05-19 22:17:53,826 - INFO - Processed 30000000 reads so far
2011-05-19 22:18:04,682 - INFO - Processed 30100000 reads so far
2011-05-19 22:18:14,709 - INFO - Processed 30200000 reads so far
2011-05-19 22:18:24,888 - INFO - Processed 30300000 reads so far
2011-05-19 22:18:35,986 - INFO - Processed 30400000 reads so far
2011-05-19 22:18:48,308 - INFO - Processed 30500000 reads so far
2011-05-19 22:18:59,645 - INFO - Processed 30600000 reads so far
2011-05-19 22:19:12,688 - INFO - Processed 30700000 reads so far
2011-05-19 22:19:15,798 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:122990309-143010309
2011-05-19 22:19:23,357 - INFO - Processed 30800000 reads so far
2011-05-19 22:19:26,095 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:2990018-23010018
2011-05-19 22:19:34,150 - INFO - Processed 30900000 reads so far
2011-05-19 22:19:47,943 - INFO - Processed 31000000 reads so far
2011-05-19 22:19:58,902 - INFO - Processed 31100000 reads so far
2011-05-19 22:20:09,669 - INFO - Processed 31200000 reads so far
2011-05-19 22:20:21,072 - INFO - Processed 31300000 reads so far
2011-05-19 22:20:30,272 - INFO - Processed 31400000 reads so far
2011-05-19 22:20:39,873 - INFO - Processed 31500000 reads so far
2011-05-19 22:20:51,248 - INFO - Processed 31600000 reads so far
2011-05-19 22:21:00,474 - INFO - Processed 31700000 reads so far
2011-05-19 22:21:04,102 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:22990031-43010031
2011-05-19 22:21:11,607 - INFO - Processed 31800000 reads so far
2011-05-19 22:21:23,718 - INFO - Processed 31900000 reads so far
2011-05-19 22:21:32,580 - INFO - Processed 32000000 reads so far
2011-05-19 22:21:44,816 - INFO - Processed 32100000 reads so far
2011-05-19 22:21:56,078 - INFO - Processed 32200000 reads so far
2011-05-19 22:22:07,004 - INFO - Processed 32300000 reads so far
2011-05-19 22:22:16,941 - INFO - Processed 32400000 reads so far
2011-05-19 22:22:27,499 - INFO - Processed 32500000 reads so far
2011-05-19 22:22:35,577 - INFO - Processed 32600000 reads so far
2011-05-19 22:22:44,464 - INFO - Processed 32700000 reads so far
2011-05-19 22:22:46,675 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:42990052-63010052
2011-05-19 22:22:52,776 - INFO - Processed 32800000 reads so far
2011-05-19 22:23:03,567 - INFO - Processed 32900000 reads so far
2011-05-19 22:23:15,446 - INFO - Processed 33000000 reads so far
2011-05-19 22:23:26,735 - INFO - Processed 33100000 reads so far
2011-05-19 22:23:37,926 - INFO - Processed 33200000 reads so far
2011-05-19 22:23:50,217 - INFO - Processed 33300000 reads so far
2011-05-19 22:24:07,188 - INFO - Processed 33400000 reads so far
2011-05-19 22:24:18,482 - INFO - Processed 33500000 reads so far
2011-05-19 22:24:28,945 - INFO - Processed 33600000 reads so far
2011-05-19 22:24:35,481 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:62990077-83010077
2011-05-19 22:24:37,287 - INFO - Processed 33700000 reads so far
2011-05-19 22:24:46,878 - INFO - Processed 33800000 reads so far
2011-05-19 22:24:56,581 - INFO - Processed 33900000 reads so far
2011-05-19 22:25:07,210 - INFO - Processed 34000000 reads so far
2011-05-19 22:25:17,637 - INFO - Processed 34100000 reads so far
2011-05-19 22:25:27,459 - INFO - Processed 34200000 reads so far
2011-05-19 22:25:37,031 - INFO - Processed 34300000 reads so far
2011-05-19 22:25:48,184 - INFO - Processed 34400000 reads so far
2011-05-19 22:25:59,980 - INFO - Processed 34500000 reads so far
2011-05-19 22:26:10,761 - INFO - Processed 34600000 reads so far
2011-05-19 22:26:20,741 - INFO - Processed 34700000 reads so far
2011-05-19 22:26:30,360 - INFO - Processed 34800000 reads so far
2011-05-19 22:26:32,052 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:82990136-103010136
2011-05-19 22:26:41,957 - INFO - Processed 34900000 reads so far
2011-05-19 22:26:52,288 - INFO - Processed 35000000 reads so far
2011-05-19 22:27:02,001 - INFO - Processed 35100000 reads so far
2011-05-19 22:27:14,471 - INFO - Processed 35200000 reads so far
2011-05-19 22:27:22,668 - INFO - Processed 35300000 reads so far
2011-05-19 22:27:33,085 - INFO - Processed 35400000 reads so far
2011-05-19 22:27:43,881 - INFO - Processed 35500000 reads so far
2011-05-19 22:27:52,382 - INFO - Processed 35600000 reads so far
2011-05-19 22:28:02,213 - INFO - Processed 35700000 reads so far
2011-05-19 22:28:12,202 - INFO - Processed 35800000 reads so far
2011-05-19 22:28:23,198 - INFO - Processed 35900000 reads so far
2011-05-19 22:28:26,091 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:102990147-123010147
2011-05-19 22:28:27,854 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:2990031-23010031
2011-05-19 22:28:30,262 - INFO - Processed 36000000 reads so far
2011-05-19 22:28:40,407 - INFO - Processed 36100000 reads so far
2011-05-19 22:28:48,256 - INFO - Processed 36200000 reads so far
2011-05-19 22:29:00,671 - INFO - Processed 36300000 reads so far
2011-05-19 22:29:09,915 - INFO - Processed 36400000 reads so far
2011-05-19 22:29:17,558 - INFO - Processed 36500000 reads so far
2011-05-19 22:29:27,558 - INFO - Processed 36600000 reads so far
2011-05-19 22:29:40,363 - INFO - Processed 36700000 reads so far
2011-05-19 22:29:49,808 - INFO - Processed 36800000 reads so far
2011-05-19 22:29:59,423 - INFO - Processed 36900000 reads so far
2011-05-19 22:30:09,774 - INFO - Processed 37000000 reads so far
2011-05-19 22:30:19,112 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:22990038-43010038
2011-05-19 22:30:19,547 - INFO - Processed 37100000 reads so far
2011-05-19 22:30:31,710 - INFO - Processed 37200000 reads so far
2011-05-19 22:30:42,859 - INFO - Processed 37300000 reads so far
2011-05-19 22:30:54,206 - INFO - Processed 37400000 reads so far
2011-05-19 22:31:06,626 - INFO - Processed 37500000 reads so far
2011-05-19 22:31:21,181 - INFO - Processed 37600000 reads so far
2011-05-19 22:31:33,086 - INFO - Processed 37700000 reads so far
2011-05-19 22:31:44,437 - INFO - Processed 37800000 reads so far
2011-05-19 22:31:56,421 - INFO - Processed 37900000 reads so far
2011-05-19 22:32:06,855 - INFO - Processed 38000000 reads so far
2011-05-19 22:32:17,185 - INFO - Processed 38100000 reads so far
2011-05-19 22:32:18,800 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:42990050-63010050
2011-05-19 22:32:26,969 - INFO - Processed 38200000 reads so far
2011-05-19 22:32:37,992 - INFO - Processed 38300000 reads so far
2011-05-19 22:32:48,470 - INFO - Processed 38400000 reads so far
2011-05-19 22:32:59,335 - INFO - Processed 38500000 reads so far
2011-05-19 22:33:09,937 - INFO - Processed 38600000 reads so far
2011-05-19 22:33:21,571 - INFO - Processed 38700000 reads so far
2011-05-19 22:33:33,132 - INFO - Processed 38800000 reads so far
2011-05-19 22:33:44,016 - INFO - Processed 38900000 reads so far
2011-05-19 22:33:58,096 - INFO - Processed 39000000 reads so far
2011-05-19 22:34:02,982 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:62990093-83010093
2011-05-19 22:34:10,089 - INFO - Processed 39100000 reads so far
2011-05-19 22:34:21,421 - INFO - Processed 39200000 reads so far
2011-05-19 22:34:31,209 - INFO - Processed 39300000 reads so far
2011-05-19 22:34:41,826 - INFO - Processed 39400000 reads so far
2011-05-19 22:34:51,404 - INFO - Processed 39500000 reads so far
2011-05-19 22:35:01,671 - INFO - Processed 39600000 reads so far
2011-05-19 22:35:11,402 - INFO - Processed 39700000 reads so far
2011-05-19 22:35:21,693 - INFO - Processed 39800000 reads so far
2011-05-19 22:35:33,749 - INFO - Processed 39900000 reads so far
2011-05-19 22:35:33,981 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:82990154-103010154
2011-05-19 22:35:42,925 - INFO - Processed 40000000 reads so far
2011-05-19 22:35:53,255 - INFO - Processed 40100000 reads so far
2011-05-19 22:36:04,299 - INFO - Processed 40200000 reads so far
2011-05-19 22:36:14,469 - INFO - Processed 40300000 reads so far
2011-05-19 22:36:25,502 - INFO - Processed 40400000 reads so far
2011-05-19 22:36:34,378 - INFO - Processed 40500000 reads so far
2011-05-19 22:36:45,089 - INFO - Processed 40600000 reads so far
2011-05-19 22:36:54,877 - INFO - Processed 40700000 reads so far
2011-05-19 22:36:55,273 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16_random:0-20010106
2011-05-19 22:36:55,314 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:2989988-23009988
2011-05-19 22:37:07,093 - INFO - Processed 40800000 reads so far
2011-05-19 22:37:17,198 - INFO - Processed 40900000 reads so far
2011-05-19 22:37:26,109 - INFO - Processed 41000000 reads so far
2011-05-19 22:37:34,319 - INFO - Processed 41100000 reads so far
2011-05-19 22:37:42,140 - INFO - Processed 41200000 reads so far
2011-05-19 22:37:51,570 - INFO - Processed 41300000 reads so far
2011-05-19 22:37:58,836 - INFO - Processed 41400000 reads so far
2011-05-19 22:38:07,089 - INFO - Processed 41500000 reads so far
2011-05-19 22:38:19,323 - INFO - Processed 41600000 reads so far
2011-05-19 22:38:27,374 - INFO - Processed 41700000 reads so far
2011-05-19 22:38:35,817 - INFO - Processed 41800000 reads so far
2011-05-19 22:38:42,160 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:22990117-43010117
2011-05-19 22:38:44,624 - INFO - Processed 41900000 reads so far
2011-05-19 22:38:55,279 - INFO - Processed 42000000 reads so far
2011-05-19 22:39:04,246 - INFO - Processed 42100000 reads so far
2011-05-19 22:39:12,505 - INFO - Processed 42200000 reads so far
2011-05-19 22:39:22,960 - INFO - Processed 42300000 reads so far
2011-05-19 22:39:35,079 - INFO - Processed 42400000 reads so far
2011-05-19 22:39:45,832 - INFO - Processed 42500000 reads so far
2011-05-19 22:39:55,742 - INFO - Processed 42600000 reads so far
2011-05-19 22:40:08,399 - INFO - Processed 42700000 reads so far
2011-05-19 22:40:20,127 - INFO - Processed 42800000 reads so far
2011-05-19 22:40:29,157 - INFO - Processed 42900000 reads so far
2011-05-19 22:40:36,238 - INFO - Processed 43000000 reads so far
2011-05-19 22:40:39,500 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:42990142-63010142
2011-05-19 22:40:44,016 - INFO - Processed 43100000 reads so far
2011-05-19 22:40:55,257 - INFO - Processed 43200000 reads so far
2011-05-19 22:41:06,792 - INFO - Processed 43300000 reads so far
2011-05-19 22:41:18,181 - INFO - Processed 43400000 reads so far
2011-05-19 22:41:30,732 - INFO - Processed 43500000 reads so far
2011-05-19 22:41:42,475 - INFO - Processed 43600000 reads so far
2011-05-19 22:41:52,750 - INFO - Processed 43700000 reads so far
2011-05-19 22:42:04,375 - INFO - Processed 43800000 reads so far
2011-05-19 22:42:16,349 - INFO - Processed 43900000 reads so far
2011-05-19 22:42:24,636 - INFO - Processed 44000000 reads so far
2011-05-19 22:42:28,041 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:62990163-83010163
2011-05-19 22:42:34,584 - INFO - Processed 44100000 reads so far
2011-05-19 22:42:46,934 - INFO - Processed 44200000 reads so far
2011-05-19 22:42:58,700 - INFO - Processed 44300000 reads so far
2011-05-19 22:43:10,232 - INFO - Processed 44400000 reads so far
2011-05-19 22:43:21,609 - INFO - Processed 44500000 reads so far
2011-05-19 22:43:32,846 - INFO - Processed 44600000 reads so far
2011-05-19 22:43:44,322 - INFO - Processed 44700000 reads so far
2011-05-19 22:43:56,514 - INFO - Processed 44800000 reads so far
2011-05-19 22:44:09,154 - INFO - Processed 44900000 reads so far
2011-05-19 22:44:20,966 - INFO - Processed 45000000 reads so far
2011-05-19 22:44:29,076 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:82990175-103010175
2011-05-19 22:44:33,169 - INFO - Processed 45100000 reads so far
2011-05-19 22:44:44,600 - INFO - Processed 45200000 reads so far
2011-05-19 22:44:56,701 - INFO - Processed 45300000 reads so far
2011-05-19 22:45:18,620 - INFO - Processed 45400000 reads so far
2011-05-19 22:45:30,023 - INFO - Processed 45500000 reads so far
2011-05-19 22:45:43,882 - INFO - Processed 45600000 reads so far
2011-05-19 22:45:52,485 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17_random:0-20010064
2011-05-19 22:45:54,484 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:2989998-23009998
2011-05-19 22:45:55,479 - INFO - Processed 45700000 reads so far
2011-05-19 22:46:08,758 - INFO - Processed 45800000 reads so far
2011-05-19 22:46:19,984 - INFO - Processed 45900000 reads so far
2011-05-19 22:46:30,545 - INFO - Processed 46000000 reads so far
2011-05-19 22:46:41,344 - INFO - Processed 46100000 reads so far
2011-05-19 22:46:53,782 - INFO - Processed 46200000 reads so far
2011-05-19 22:47:05,004 - INFO - Processed 46300000 reads so far
2011-05-19 22:47:15,306 - INFO - Processed 46400000 reads so far
2011-05-19 22:47:24,545 - INFO - Processed 46500000 reads so far
2011-05-19 22:47:34,689 - INFO - Processed 46600000 reads so far
2011-05-19 22:47:44,993 - INFO - Processed 46700000 reads so far
2011-05-19 22:47:46,696 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:22990000-43010000
2011-05-19 22:47:54,495 - INFO - Processed 46800000 reads so far
2011-05-19 22:48:07,297 - INFO - Processed 46900000 reads so far
2011-05-19 22:48:20,457 - INFO - Processed 47000000 reads so far
2011-05-19 22:48:31,661 - INFO - Processed 47100000 reads so far
2011-05-19 22:48:45,359 - INFO - Processed 47200000 reads so far
2011-05-19 22:48:54,788 - INFO - Processed 47300000 reads so far
2011-05-19 22:49:04,307 - INFO - Processed 47400000 reads so far
2011-05-19 22:49:15,314 - INFO - Processed 47500000 reads so far
2011-05-19 22:49:28,986 - INFO - Processed 47600000 reads so far
2011-05-19 22:49:38,327 - INFO - Processed 47700000 reads so far
2011-05-19 22:49:42,264 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:42990003-63010003
2011-05-19 22:49:50,337 - INFO - Processed 47800000 reads so far
2011-05-19 22:50:01,122 - INFO - Processed 47900000 reads so far
2011-05-19 22:50:12,056 - INFO - Processed 48000000 reads so far
2011-05-19 22:50:19,475 - INFO - Processed 48100000 reads so far
2011-05-19 22:50:31,723 - INFO - Processed 48200000 reads so far
2011-05-19 22:50:41,396 - INFO - Processed 48300000 reads so far
2011-05-19 22:50:51,710 - INFO - Processed 48400000 reads so far
2011-05-19 22:51:02,489 - INFO - Processed 48500000 reads so far
2011-05-19 22:51:10,769 - INFO - Processed 48600000 reads so far
2011-05-19 22:51:20,439 - INFO - Processed 48700000 reads so far
2011-05-19 22:51:22,712 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:62990004-83010004
2011-05-19 22:51:29,109 - INFO - Processed 48800000 reads so far
2011-05-19 22:51:38,784 - INFO - Processed 48900000 reads so far
2011-05-19 22:51:48,514 - INFO - Processed 49000000 reads so far
2011-05-19 22:51:57,504 - INFO - Processed 49100000 reads so far
2011-05-19 22:52:09,500 - INFO - Processed 49200000 reads so far
2011-05-19 22:52:19,788 - INFO - Processed 49300000 reads so far
2011-05-19 22:52:29,239 - INFO - Processed 49400000 reads so far
2011-05-19 22:52:39,089 - INFO - Processed 49500000 reads so far
2011-05-19 22:52:49,121 - INFO - Processed 49600000 reads so far
2011-05-19 22:53:00,400 - INFO - Processed 49700000 reads so far
2011-05-19 22:53:09,041 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:82990005-103010005
2011-05-19 22:53:11,077 - INFO - Processed 49800000 reads so far
2011-05-19 22:53:22,272 - INFO - Processed 49900000 reads so far
2011-05-19 22:53:34,069 - INFO - Processed 50000000 reads so far
2011-05-19 22:53:44,989 - INFO - Processed 50100000 reads so far
2011-05-19 22:53:48,913 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:2990058-23010058
2011-05-19 22:53:53,857 - INFO - Processed 50200000 reads so far
2011-05-19 22:54:03,426 - INFO - Processed 50300000 reads so far
2011-05-19 22:54:11,356 - INFO - Processed 50400000 reads so far
2011-05-19 22:54:21,836 - INFO - Processed 50500000 reads so far
2011-05-19 22:54:31,471 - INFO - Processed 50600000 reads so far
2011-05-19 22:54:43,485 - INFO - Processed 50700000 reads so far
2011-05-19 22:54:54,611 - INFO - Processed 50800000 reads so far
2011-05-19 22:55:03,158 - INFO - Processed 50900000 reads so far
2011-05-19 22:55:13,548 - INFO - Processed 51000000 reads so far
2011-05-19 22:55:25,846 - INFO - Processed 51100000 reads so far
2011-05-19 22:55:33,685 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:22990098-43010098
2011-05-19 22:55:37,189 - INFO - Processed 51200000 reads so far
2011-05-19 22:55:49,468 - INFO - Processed 51300000 reads so far
2011-05-19 22:56:00,712 - INFO - Processed 51400000 reads so far
2011-05-19 22:56:12,593 - INFO - Processed 51500000 reads so far
2011-05-19 22:56:23,726 - INFO - Processed 51600000 reads so far
2011-05-19 22:56:35,105 - INFO - Processed 51700000 reads so far
2011-05-19 22:56:46,939 - INFO - Processed 51800000 reads so far
2011-05-19 22:56:58,059 - INFO - Processed 51900000 reads so far
2011-05-19 22:57:10,920 - INFO - Processed 52000000 reads so far
2011-05-19 22:57:22,522 - INFO - Processed 52100000 reads so far
2011-05-19 22:57:33,514 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:42990109-63010109
2011-05-19 22:57:34,261 - INFO - Processed 52200000 reads so far
2011-05-19 22:57:45,867 - INFO - Processed 52300000 reads so far
2011-05-19 22:57:56,012 - INFO - Processed 52400000 reads so far
2011-05-19 22:58:08,279 - INFO - Processed 52500000 reads so far
2011-05-19 22:58:19,411 - INFO - Processed 52600000 reads so far
2011-05-19 22:58:31,114 - INFO - Processed 52700000 reads so far
2011-05-19 22:58:42,924 - INFO - Processed 52800000 reads so far
2011-05-19 22:58:54,013 - INFO - Processed 52900000 reads so far
2011-05-19 22:59:05,583 - INFO - Processed 53000000 reads so far
2011-05-19 22:59:16,263 - INFO - Processed 53100000 reads so far
2011-05-19 22:59:22,688 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:2989988-23009988
2011-05-19 22:59:25,515 - INFO - Processed 53200000 reads so far
2011-05-19 22:59:36,782 - INFO - Processed 53300000 reads so far
2011-05-19 22:59:50,239 - INFO - Processed 53400000 reads so far
2011-05-19 23:00:03,268 - INFO - Processed 53500000 reads so far
2011-05-19 23:00:14,573 - INFO - Processed 53600000 reads so far
2011-05-19 23:00:25,808 - INFO - Processed 53700000 reads so far
2011-05-19 23:00:37,015 - INFO - Processed 53800000 reads so far
2011-05-19 23:00:47,070 - INFO - Processed 53900000 reads so far
2011-05-19 23:00:58,991 - INFO - Processed 54000000 reads so far
2011-05-19 23:01:08,747 - INFO - Processed 54100000 reads so far
2011-05-19 23:01:11,192 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:22990045-43010045
2011-05-19 23:01:19,191 - INFO - Processed 54200000 reads so far
2011-05-19 23:01:34,880 - INFO - Processed 54300000 reads so far
2011-05-19 23:01:46,026 - INFO - Processed 54400000 reads so far
2011-05-19 23:01:54,404 - INFO - Processed 54500000 reads so far
2011-05-19 23:02:02,688 - INFO - Processed 54600000 reads so far
2011-05-19 23:02:11,311 - INFO - Processed 54700000 reads so far
2011-05-19 23:02:21,379 - INFO - Processed 54800000 reads so far
2011-05-19 23:02:29,448 - INFO - Processed 54900000 reads so far
2011-05-19 23:02:38,952 - INFO - Processed 55000000 reads so far
2011-05-19 23:02:48,189 - INFO - Processed 55100000 reads so far
2011-05-19 23:02:51,523 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:42990047-63010047
2011-05-19 23:02:58,832 - INFO - Processed 55200000 reads so far
2011-05-19 23:03:10,514 - INFO - Processed 55300000 reads so far
2011-05-19 23:03:24,374 - INFO - Processed 55400000 reads so far
2011-05-19 23:03:38,782 - INFO - Processed 55500000 reads so far
2011-05-19 23:03:50,641 - INFO - Processed 55600000 reads so far
2011-05-19 23:04:06,070 - INFO - Processed 55700000 reads so far
2011-05-19 23:04:16,405 - INFO - Processed 55800000 reads so far
2011-05-19 23:04:25,045 - INFO - Processed 55900000 reads so far
2011-05-19 23:04:36,300 - INFO - Processed 56000000 reads so far
2011-05-19 23:04:44,438 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:62990060-83010060
2011-05-19 23:04:45,897 - INFO - Processed 56100000 reads so far
2011-05-19 23:04:56,408 - INFO - Processed 56200000 reads so far
2011-05-19 23:05:05,141 - INFO - Processed 56300000 reads so far
2011-05-19 23:05:13,855 - INFO - Processed 56400000 reads so far
2011-05-19 23:05:23,307 - INFO - Processed 56500000 reads so far
2011-05-19 23:05:31,594 - INFO - Processed 56600000 reads so far
2011-05-19 23:05:42,141 - INFO - Processed 56700000 reads so far
2011-05-19 23:05:51,831 - INFO - Processed 56800000 reads so far
2011-05-19 23:06:03,067 - INFO - Processed 56900000 reads so far
2011-05-19 23:06:14,208 - INFO - Processed 57000000 reads so far
2011-05-19 23:06:24,241 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:82990064-103010064
2011-05-19 23:06:26,015 - INFO - Processed 57100000 reads so far
2011-05-19 23:06:35,762 - INFO - Processed 57200000 reads so far
2011-05-19 23:06:45,134 - INFO - Processed 57300000 reads so far
2011-05-19 23:06:53,824 - INFO - Processed 57400000 reads so far
2011-05-19 23:07:03,938 - INFO - Processed 57500000 reads so far
2011-05-19 23:07:12,831 - INFO - Processed 57600000 reads so far
2011-05-19 23:07:23,003 - INFO - Processed 57700000 reads so far
2011-05-19 23:07:34,027 - INFO - Processed 57800000 reads so far
2011-05-19 23:07:44,137 - INFO - Processed 57900000 reads so far
2011-05-19 23:07:53,975 - INFO - Processed 58000000 reads so far
2011-05-19 23:08:02,638 - INFO - Processed 58100000 reads so far
2011-05-19 23:08:05,094 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:102990156-123010156
2011-05-19 23:08:15,713 - INFO - Processed 58200000 reads so far
2011-05-19 23:08:26,239 - INFO - Processed 58300000 reads so far
2011-05-19 23:08:34,783 - INFO - Processed 58400000 reads so far
2011-05-19 23:08:44,258 - INFO - Processed 58500000 reads so far
2011-05-19 23:08:53,750 - INFO - Processed 58600000 reads so far
2011-05-19 23:09:02,760 - INFO - Processed 58700000 reads so far
2011-05-19 23:09:12,671 - INFO - Processed 58800000 reads so far
2011-05-19 23:09:22,773 - INFO - Processed 58900000 reads so far
2011-05-19 23:09:31,540 - INFO - Processed 59000000 reads so far
2011-05-19 23:09:37,283 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:122990157-143010157
2011-05-19 23:09:43,612 - INFO - Processed 59100000 reads so far
2011-05-19 23:09:57,284 - INFO - Processed 59200000 reads so far
2011-05-19 23:10:08,479 - INFO - Processed 59300000 reads so far
2011-05-19 23:10:20,606 - INFO - Processed 59400000 reads so far
2011-05-19 23:10:33,015 - INFO - Processed 59500000 reads so far
2011-05-19 23:10:46,210 - INFO - Processed 59600000 reads so far
2011-05-19 23:10:58,071 - INFO - Processed 59700000 reads so far
2011-05-19 23:11:10,307 - INFO - Processed 59800000 reads so far
2011-05-19 23:11:19,220 - INFO - Processed 59900000 reads so far
2011-05-19 23:11:29,647 - INFO - Processed 60000000 reads so far
2011-05-19 23:11:41,492 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:142990204-163010204
2011-05-19 23:11:41,983 - INFO - Processed 60100000 reads so far
2011-05-19 23:11:53,054 - INFO - Processed 60200000 reads so far
2011-05-19 23:12:03,190 - INFO - Processed 60300000 reads so far
2011-05-19 23:12:15,676 - INFO - Processed 60400000 reads so far
2011-05-19 23:12:27,031 - INFO - Processed 60500000 reads so far
2011-05-19 23:12:38,756 - INFO - Processed 60600000 reads so far
2011-05-19 23:12:53,054 - INFO - Processed 60700000 reads so far
2011-05-19 23:13:04,743 - INFO - Processed 60800000 reads so far
2011-05-19 23:13:18,728 - INFO - Processed 60900000 reads so far
2011-05-19 23:13:30,048 - INFO - Processed 61000000 reads so far
2011-05-19 23:13:33,810 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:162990221-183010221
2011-05-19 23:13:41,509 - INFO - Processed 61100000 reads so far
2011-05-19 23:13:53,145 - INFO - Processed 61200000 reads so far
2011-05-19 23:14:04,517 - INFO - Processed 61300000 reads so far
2011-05-19 23:14:17,700 - INFO - Processed 61400000 reads so far
2011-05-19 23:14:29,247 - INFO - Processed 61500000 reads so far
2011-05-19 23:14:40,390 - INFO - Processed 61600000 reads so far
2011-05-19 23:14:54,140 - INFO - Processed 61700000 reads so far
2011-05-19 23:15:06,502 - INFO - Processed 61800000 reads so far
2011-05-19 23:15:17,778 - INFO - Processed 61900000 reads so far
2011-05-19 23:15:29,784 - INFO - Processed 62000000 reads so far
2011-05-19 23:15:39,068 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:182990222-203010222
2011-05-19 23:15:43,129 - INFO - Processed 62100000 reads so far
2011-05-19 23:15:53,809 - INFO - Processed 62200000 reads so far
2011-05-19 23:16:02,792 - INFO - Processed 62300000 reads so far
2011-05-19 23:16:11,408 - INFO - Processed 62400000 reads so far
2011-05-19 23:16:21,215 - INFO - Processed 62500000 reads so far
2011-05-19 23:16:35,225 - INFO - Processed 62600000 reads so far
2011-05-19 23:16:45,065 - INFO - Processed 62700000 reads so far
2011-05-19 23:16:58,870 - INFO - Processed 62800000 reads so far
2011-05-19 23:17:03,874 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1_random:0-20010007
2011-05-19 23:17:11,461 - INFO - Processed 62900000 reads so far
2011-05-19 23:17:14,846 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:2989997-23009997
2011-05-19 23:17:20,646 - INFO - Processed 63000000 reads so far
2011-05-19 23:17:31,220 - INFO - Processed 63100000 reads so far
2011-05-19 23:17:44,908 - INFO - Processed 63200000 reads so far
2011-05-19 23:17:56,322 - INFO - Processed 63300000 reads so far
2011-05-19 23:18:06,438 - INFO - Processed 63400000 reads so far
2011-05-19 23:18:17,075 - INFO - Processed 63500000 reads so far
2011-05-19 23:18:26,228 - INFO - Processed 63600000 reads so far
2011-05-19 23:18:35,537 - INFO - Processed 63700000 reads so far
2011-05-19 23:18:59,661 - INFO - Processed 63800000 reads so far
2011-05-19 23:19:10,329 - INFO - Processed 63900000 reads so far
2011-05-19 23:19:15,544 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:22990014-43010014
2011-05-19 23:19:19,989 - INFO - Processed 64000000 reads so far
2011-05-19 23:19:28,385 - INFO - Processed 64100000 reads so far
2011-05-19 23:19:36,189 - INFO - Processed 64200000 reads so far
2011-05-19 23:19:44,722 - INFO - Processed 64300000 reads so far
2011-05-19 23:19:57,315 - INFO - Processed 64400000 reads so far
2011-05-19 23:20:07,099 - INFO - Processed 64500000 reads so far
2011-05-19 23:20:18,270 - INFO - Processed 64600000 reads so far
2011-05-19 23:20:26,288 - INFO - Processed 64700000 reads so far
2011-05-19 23:20:34,839 - INFO - Processed 64800000 reads so far
2011-05-19 23:20:42,876 - INFO - Processed 64900000 reads so far
2011-05-19 23:20:53,770 - INFO - Processed 65000000 reads so far
2011-05-19 23:21:02,889 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:42990043-63010043
2011-05-19 23:21:06,197 - INFO - Processed 65100000 reads so far
2011-05-19 23:21:16,522 - INFO - Processed 65200000 reads so far
2011-05-19 23:21:25,520 - INFO - Processed 65300000 reads so far
2011-05-19 23:21:35,735 - INFO - Processed 65400000 reads so far
2011-05-19 23:21:43,853 - INFO - Processed 65500000 reads so far
2011-05-19 23:21:53,146 - INFO - Processed 65600000 reads so far
2011-05-19 23:22:02,984 - INFO - Processed 65700000 reads so far
2011-05-19 23:22:12,654 - INFO - Processed 65800000 reads so far
2011-05-19 23:22:24,094 - INFO - Processed 65900000 reads so far
2011-05-19 23:22:34,201 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:62990053-83010053
2011-05-19 23:22:34,860 - INFO - Processed 66000000 reads so far
2011-05-19 23:22:45,851 - INFO - Processed 66100000 reads so far
2011-05-19 23:22:55,760 - INFO - Processed 66200000 reads so far
2011-05-19 23:23:07,794 - INFO - Processed 66300000 reads so far
2011-05-19 23:23:17,941 - INFO - Processed 66400000 reads so far
2011-05-19 23:23:27,302 - INFO - Processed 66500000 reads so far
2011-05-19 23:23:38,790 - INFO - Processed 66600000 reads so far
2011-05-19 23:23:50,303 - INFO - Processed 66700000 reads so far
2011-05-19 23:24:00,975 - INFO - Processed 66800000 reads so far
2011-05-19 23:24:10,116 - INFO - Processed 66900000 reads so far
2011-05-19 23:24:17,172 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:82990101-103010101
2011-05-19 23:24:21,907 - INFO - Processed 67000000 reads so far
2011-05-19 23:24:32,696 - INFO - Processed 67100000 reads so far
2011-05-19 23:24:43,286 - INFO - Processed 67200000 reads so far
2011-05-19 23:24:54,468 - INFO - Processed 67300000 reads so far
2011-05-19 23:25:06,140 - INFO - Processed 67400000 reads so far
2011-05-19 23:25:21,934 - INFO - Processed 67500000 reads so far
2011-05-19 23:25:37,688 - INFO - Processed 67600000 reads so far
2011-05-19 23:25:46,410 - INFO - Processed 67700000 reads so far
2011-05-19 23:25:55,579 - INFO - Processed 67800000 reads so far
2011-05-19 23:26:02,065 - INFO - Processed 67900000 reads so far
2011-05-19 23:26:10,971 - INFO - Processed 68000000 reads so far
2011-05-19 23:26:18,801 - INFO - Processed 68100000 reads so far
2011-05-19 23:26:25,966 - INFO - Processed 68200000 reads so far
2011-05-19 23:26:34,092 - INFO - Processed 68300000 reads so far
2011-05-19 23:26:40,738 - INFO - Processed 68400000 reads so far
2011-05-19 23:26:50,070 - INFO - Processed 68500000 reads so far
2011-05-19 23:26:58,221 - INFO - Processed 68600000 reads so far
2011-05-19 23:27:07,356 - INFO - Processed 68700000 reads so far
2011-05-19 23:27:16,154 - INFO - Processed 68800000 reads so far
2011-05-19 23:27:26,293 - INFO - Processed 68900000 reads so far
2011-05-19 23:27:34,927 - INFO - Processed 69000000 reads so far
2011-05-19 23:27:42,959 - INFO - Processed 69100000 reads so far
2011-05-19 23:27:51,549 - INFO - Processed 69200000 reads so far
2011-05-19 23:28:01,747 - INFO - Processed 69300000 reads so far
2011-05-19 23:28:10,418 - INFO - Processed 69400000 reads so far
2011-05-19 23:28:19,294 - INFO - Processed 69500000 reads so far
2011-05-19 23:28:28,603 - INFO - Processed 69600000 reads so far
2011-05-19 23:28:37,553 - INFO - Processed 69700000 reads so far
2011-05-19 23:28:47,016 - INFO - Processed 69800000 reads so far
2011-05-19 23:28:55,751 - INFO - Processed 69900000 reads so far
2011-05-19 23:29:03,798 - INFO - Processed 70000000 reads so far
2011-05-19 23:29:11,445 - INFO - Processed 70100000 reads so far
2011-05-19 23:29:18,128 - INFO - Processed 70200000 reads so far
2011-05-19 23:29:25,184 - INFO - Processed 70300000 reads so far
2011-05-19 23:29:32,430 - INFO - Processed 70400000 reads so far
2011-05-19 23:29:38,933 - INFO - Processed 70500000 reads so far
2011-05-19 23:29:46,099 - INFO - Processed 70600000 reads so far
2011-05-19 23:29:53,122 - INFO - Processed 70700000 reads so far
2011-05-19 23:30:00,350 - INFO - Processed 70800000 reads so far
2011-05-19 23:30:09,494 - INFO - Processed 70900000 reads so far
2011-05-19 23:30:19,945 - INFO - Processed 71000000 reads so far
2011-05-19 23:30:30,674 - INFO - Processed 71100000 reads so far
2011-05-19 23:30:38,726 - INFO - Processed 71200000 reads so far
2011-05-19 23:30:47,523 - INFO - Processed 71300000 reads so far
2011-05-19 23:30:53,436 - INFO - Processed 71400000 reads so far
2011-05-19 23:31:01,032 - INFO - Processed 71500000 reads so far
2011-05-19 23:31:08,604 - INFO - Processed 71600000 reads so far
2011-05-19 23:31:17,562 - INFO - Processed 71700000 reads so far
2011-05-19 23:31:27,186 - INFO - Processed 71800000 reads so far
2011-05-19 23:31:36,767 - INFO - Processed 71900000 reads so far
2011-05-19 23:31:45,341 - INFO - Processed 72000000 reads so far
2011-05-19 23:31:56,807 - INFO - Processed 72100000 reads so far
2011-05-19 23:32:05,571 - INFO - Processed 72200000 reads so far
2011-05-19 23:32:13,568 - INFO - Processed 72300000 reads so far
2011-05-19 23:32:21,297 - INFO - Processed 72400000 reads so far
2011-05-19 23:32:29,562 - INFO - Processed 72500000 reads so far
2011-05-19 23:32:39,403 - INFO - Processed 72600000 reads so far
2011-05-19 23:32:47,338 - INFO - Processed 72700000 reads so far
2011-05-19 23:32:56,594 - INFO - Processed 72800000 reads so far
2011-05-19 23:33:05,026 - INFO - Processed 72900000 reads so far
2011-05-19 23:33:14,227 - INFO - Processed 73000000 reads so far
2011-05-19 23:33:27,269 - INFO - Processed 73100000 reads so far
2011-05-19 23:33:38,160 - INFO - Processed 73200000 reads so far
2011-05-19 23:33:47,638 - INFO - Processed 73300000 reads so far
2011-05-19 23:33:57,097 - INFO - Processed 73400000 reads so far
2011-05-19 23:34:06,536 - INFO - Processed 73500000 reads so far
2011-05-19 23:34:17,763 - INFO - Processed 73600000 reads so far
2011-05-19 23:34:27,696 - INFO - Processed 73700000 reads so far
2011-05-19 23:34:37,165 - INFO - Processed 73800000 reads so far
2011-05-19 23:34:48,622 - INFO - Processed 73900000 reads so far
2011-05-19 23:34:58,132 - INFO - Processed 74000000 reads so far
2011-05-19 23:35:06,850 - INFO - Processed 74100000 reads so far
2011-05-19 23:35:15,482 - INFO - Processed 74200000 reads so far
2011-05-19 23:35:25,457 - INFO - Processed 74300000 reads so far
2011-05-19 23:35:34,436 - INFO - Processed 74400000 reads so far
2011-05-19 23:35:43,888 - INFO - Processed 74500000 reads so far
2011-05-19 23:35:53,302 - INFO - Processed 74600000 reads so far
2011-05-19 23:35:59,798 - INFO - Processed 74700000 reads so far
2011-05-19 23:36:08,761 - INFO - Processed 74800000 reads so far
2011-05-19 23:36:17,810 - INFO - Processed 74900000 reads so far
2011-05-19 23:36:25,969 - INFO - Processed 75000000 reads so far
2011-05-19 23:36:33,008 - INFO - Processed 75100000 reads so far
2011-05-19 23:36:42,876 - INFO - Processed 75200000 reads so far
2011-05-19 23:36:51,305 - INFO - Processed 75300000 reads so far
2011-05-19 23:36:58,918 - INFO - Processed 75400000 reads so far
2011-05-19 23:37:07,744 - INFO - Processed 75500000 reads so far
2011-05-19 23:37:17,019 - INFO - Processed 75600000 reads so far
2011-05-19 23:37:24,246 - INFO - Processed 75700000 reads so far
2011-05-19 23:37:30,786 - INFO - Processed 75800000 reads so far
2011-05-19 23:37:40,069 - INFO - Processed 75900000 reads so far
2011-05-19 23:37:47,273 - INFO - Processed 76000000 reads so far
2011-05-19 23:37:56,572 - INFO - Processed 76100000 reads so far
2011-05-19 23:38:06,441 - INFO - Processed 76200000 reads so far
2011-05-19 23:38:17,354 - INFO - Processed 76300000 reads so far
2011-05-19 23:38:27,066 - INFO - Processed 76400000 reads so far
2011-05-19 23:38:36,510 - INFO - Processed 76500000 reads so far
2011-05-19 23:38:46,136 - INFO - Processed 76600000 reads so far
2011-05-19 23:39:15,343 - INFO - Processed 76700000 reads so far
2011-05-19 23:39:21,408 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:102990142-123010142
2011-05-19 23:39:40,671 - INFO - Processed 76800000 reads so far
2011-05-19 23:39:50,720 - INFO - Processed 76900000 reads so far
2011-05-19 23:39:59,054 - INFO - Processed 77000000 reads so far
2011-05-19 23:40:10,075 - INFO - Processed 77100000 reads so far
2011-05-19 23:40:19,150 - INFO - Processed 77200000 reads so far
2011-05-19 23:40:27,882 - INFO - Processed 77300000 reads so far
2011-05-19 23:40:36,675 - INFO - Processed 77400000 reads so far
2011-05-19 23:40:47,238 - INFO - Processed 77500000 reads so far
2011-05-19 23:40:58,005 - INFO - Processed 77600000 reads so far
2011-05-19 23:41:08,109 - INFO - Processed 77700000 reads so far
2011-05-19 23:41:09,002 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:122990235-143010235
2011-05-19 23:41:18,764 - INFO - Processed 77800000 reads so far
2011-05-19 23:41:29,260 - INFO - Processed 77900000 reads so far
2011-05-19 23:41:40,022 - INFO - Processed 78000000 reads so far
2011-05-19 23:41:49,789 - INFO - Processed 78100000 reads so far
2011-05-19 23:42:02,269 - INFO - Processed 78200000 reads so far
2011-05-19 23:42:10,489 - INFO - Processed 78300000 reads so far
2011-05-19 23:42:19,246 - INFO - Processed 78400000 reads so far
2011-05-19 23:42:28,693 - INFO - Processed 78500000 reads so far
2011-05-19 23:42:37,687 - INFO - Processed 78600000 reads so far
2011-05-19 23:42:46,246 - INFO - Processed 78700000 reads so far
2011-05-19 23:42:49,209 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:142990257-163010257
2011-05-19 23:42:56,552 - INFO - Processed 78800000 reads so far
2011-05-19 23:43:06,762 - INFO - Processed 78900000 reads so far
2011-05-19 23:43:15,437 - INFO - Processed 79000000 reads so far
2011-05-19 23:43:25,507 - INFO - Processed 79100000 reads so far
2011-05-19 23:43:38,232 - INFO - Processed 79200000 reads so far
2011-05-19 23:43:49,177 - INFO - Processed 79300000 reads so far
2011-05-19 23:44:01,149 - INFO - Processed 79400000 reads so far
2011-05-19 23:44:14,981 - INFO - Processed 79500000 reads so far
2011-05-19 23:44:26,308 - INFO - Processed 79600000 reads so far
2011-05-19 23:44:38,556 - INFO - Processed 79700000 reads so far
2011-05-19 23:44:52,105 - INFO - Processed 79800000 reads so far
2011-05-19 23:44:54,678 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:162990262-183010262
2011-05-19 23:45:03,894 - INFO - Processed 79900000 reads so far
2011-05-19 23:45:15,451 - INFO - Processed 80000000 reads so far
2011-05-19 23:45:27,508 - INFO - Processed 80100000 reads so far
2011-05-19 23:45:40,347 - INFO - Processed 80200000 reads so far
2011-05-19 23:45:52,807 - INFO - Processed 80300000 reads so far
2011-05-19 23:46:05,430 - INFO - Processed 80400000 reads so far
2011-05-19 23:46:16,991 - INFO - Processed 80500000 reads so far
2011-05-19 23:46:29,667 - INFO - Processed 80600000 reads so far
2011-05-19 23:46:45,203 - INFO - Processed 80700000 reads so far
2011-05-19 23:46:57,475 - INFO - Processed 80800000 reads so far
2011-05-19 23:47:08,740 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:2989998-23009998
2011-05-19 23:47:09,040 - INFO - Processed 80900000 reads so far
2011-05-19 23:47:21,599 - INFO - Processed 81000000 reads so far
2011-05-19 23:47:31,725 - INFO - Processed 81100000 reads so far
2011-05-19 23:47:43,038 - INFO - Processed 81200000 reads so far
2011-05-19 23:47:55,768 - INFO - Processed 81300000 reads so far
2011-05-19 23:48:07,601 - INFO - Processed 81400000 reads so far
2011-05-19 23:48:30,882 - INFO - Processed 81500000 reads so far
2011-05-19 23:48:53,690 - INFO - Processed 81600000 reads so far
2011-05-19 23:49:05,877 - INFO - Processed 81700000 reads so far
2011-05-19 23:49:17,601 - INFO - Processed 81800000 reads so far
2011-05-19 23:49:23,653 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:22990006-43010006
2011-05-19 23:49:32,335 - INFO - Processed 81900000 reads so far
2011-05-19 23:49:44,371 - INFO - Processed 82000000 reads so far
2011-05-19 23:49:55,394 - INFO - Processed 82100000 reads so far
2011-05-19 23:50:09,111 - INFO - Processed 82200000 reads so far
2011-05-19 23:50:20,681 - INFO - Processed 82300000 reads so far
2011-05-19 23:50:31,873 - INFO - Processed 82400000 reads so far
2011-05-19 23:50:43,322 - INFO - Processed 82500000 reads so far
2011-05-19 23:50:55,825 - INFO - Processed 82600000 reads so far
2011-05-19 23:51:07,640 - INFO - Processed 82700000 reads so far
2011-05-19 23:51:20,932 - INFO - Processed 82800000 reads so far
2011-05-19 23:51:23,396 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:42990016-63010016
2011-05-19 23:51:32,410 - INFO - Processed 82900000 reads so far
2011-05-19 23:51:42,055 - INFO - Processed 83000000 reads so far
2011-05-19 23:51:55,853 - INFO - Processed 83100000 reads so far
2011-05-19 23:52:09,852 - INFO - Processed 83200000 reads so far
2011-05-19 23:52:21,338 - INFO - Processed 83300000 reads so far
2011-05-19 23:52:32,814 - INFO - Processed 83400000 reads so far
2011-05-19 23:52:44,947 - INFO - Processed 83500000 reads so far
2011-05-19 23:52:56,421 - INFO - Processed 83600000 reads so far
2011-05-19 23:53:07,660 - INFO - Processed 83700000 reads so far
2011-05-19 23:53:13,465 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:62990033-83010033
2011-05-19 23:53:19,271 - INFO - Processed 83800000 reads so far
2011-05-19 23:53:31,092 - INFO - Processed 83900000 reads so far
2011-05-19 23:53:42,669 - INFO - Processed 84000000 reads so far
2011-05-19 23:53:55,989 - INFO - Processed 84100000 reads so far
2011-05-19 23:54:07,173 - INFO - Processed 84200000 reads so far
2011-05-19 23:54:17,426 - INFO - Processed 84300000 reads so far
2011-05-19 23:54:28,661 - INFO - Processed 84400000 reads so far
2011-05-19 23:54:37,493 - INFO - Processed 84500000 reads so far
2011-05-19 23:54:48,170 - INFO - Processed 84600000 reads so far
2011-05-19 23:54:53,646 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:82990048-103010048
2011-05-19 23:54:57,323 - INFO - Processed 84700000 reads so far
2011-05-19 23:55:06,493 - INFO - Processed 84800000 reads so far
2011-05-19 23:55:16,009 - INFO - Processed 84900000 reads so far
2011-05-19 23:55:26,730 - INFO - Processed 85000000 reads so far
2011-05-19 23:55:58,386 - INFO - Processed 85100000 reads so far
2011-05-19 23:56:07,621 - INFO - Processed 85200000 reads so far
2011-05-19 23:56:16,564 - INFO - Processed 85300000 reads so far
2011-05-19 23:56:26,121 - INFO - Processed 85400000 reads so far
2011-05-19 23:56:35,583 - INFO - Processed 85500000 reads so far
2011-05-19 23:56:45,033 - INFO - Processed 85600000 reads so far
2011-05-19 23:56:54,393 - INFO - Processed 85700000 reads so far
2011-05-19 23:56:58,360 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:102990061-123010061
2011-05-19 23:57:07,261 - INFO - Processed 85800000 reads so far
2011-05-19 23:57:18,076 - INFO - Processed 85900000 reads so far
2011-05-19 23:57:32,086 - INFO - Processed 86000000 reads so far
2011-05-19 23:57:43,973 - INFO - Processed 86100000 reads so far
2011-05-19 23:57:53,756 - INFO - Processed 86200000 reads so far
2011-05-19 23:58:05,203 - INFO - Processed 86300000 reads so far
2011-05-19 23:58:18,122 - INFO - Processed 86400000 reads so far
2011-05-19 23:58:29,886 - INFO - Processed 86500000 reads so far
2011-05-19 23:58:43,232 - INFO - Processed 86600000 reads so far
2011-05-19 23:58:54,808 - INFO - Processed 86700000 reads so far
2011-05-19 23:58:55,561 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:122990088-143010088
2011-05-19 23:59:06,437 - INFO - Processed 86800000 reads so far
2011-05-19 23:59:16,901 - INFO - Processed 86900000 reads so far
2011-05-19 23:59:27,364 - INFO - Processed 87000000 reads so far
2011-05-19 23:59:37,172 - INFO - Processed 87100000 reads so far
2011-05-19 23:59:48,887 - INFO - Processed 87200000 reads so far
2011-05-20 00:00:00,136 - INFO - Processed 87300000 reads so far
2011-05-20 00:00:11,719 - INFO - Processed 87400000 reads so far
2011-05-20 00:00:24,963 - INFO - Processed 87500000 reads so far
2011-05-20 00:00:34,189 - INFO - Processed 87600000 reads so far
2011-05-20 00:00:40,185 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:142990133-163010133
2011-05-20 00:00:43,036 - INFO - Processed 87700000 reads so far
2011-05-20 00:00:51,967 - INFO - Processed 87800000 reads so far
2011-05-20 00:01:02,282 - INFO - Processed 87900000 reads so far
2011-05-20 00:01:10,897 - INFO - Processed 88000000 reads so far
2011-05-20 00:01:20,369 - INFO - Processed 88100000 reads so far
2011-05-20 00:01:34,339 - INFO - Processed 88200000 reads so far
2011-05-20 00:01:44,980 - INFO - Processed 88300000 reads so far
2011-05-20 00:01:56,560 - INFO - Processed 88400000 reads so far
2011-05-20 00:02:06,319 - INFO - Processed 88500000 reads so far
2011-05-20 00:02:06,882 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3_random:0-20010010
2011-05-20 00:02:07,017 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:2989988-23009988
2011-05-20 00:02:15,136 - INFO - Processed 88600000 reads so far
2011-05-20 00:02:26,034 - INFO - Processed 88700000 reads so far
2011-05-20 00:02:36,623 - INFO - Processed 88800000 reads so far
2011-05-20 00:02:46,887 - INFO - Processed 88900000 reads so far
2011-05-20 00:02:56,596 - INFO - Processed 89000000 reads so far
2011-05-20 00:03:09,295 - INFO - Processed 89100000 reads so far
2011-05-20 00:03:19,286 - INFO - Processed 89200000 reads so far
2011-05-20 00:03:29,910 - INFO - Processed 89300000 reads so far
2011-05-20 00:03:49,031 - INFO - Processed 89400000 reads so far
2011-05-20 00:04:20,102 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:22990014-43010014
2011-05-20 00:04:21,351 - INFO - Processed 89500000 reads so far
2011-05-20 00:04:32,534 - INFO - Processed 89600000 reads so far
2011-05-20 00:04:45,332 - INFO - Processed 89700000 reads so far
2011-05-20 00:04:56,570 - INFO - Processed 89800000 reads so far
2011-05-20 00:05:08,562 - INFO - Processed 89900000 reads so far
2011-05-20 00:05:20,758 - INFO - Processed 90000000 reads so far
2011-05-20 00:05:35,735 - INFO - Processed 90100000 reads so far
2011-05-20 00:05:47,272 - INFO - Processed 90200000 reads so far
2011-05-20 00:05:59,913 - INFO - Processed 90300000 reads so far
2011-05-20 00:06:15,995 - INFO - Processed 90400000 reads so far
2011-05-20 00:06:18,076 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:42990038-63010038
2011-05-20 00:06:27,426 - INFO - Processed 90500000 reads so far
2011-05-20 00:06:40,402 - INFO - Processed 90600000 reads so far
2011-05-20 00:06:53,181 - INFO - Processed 90700000 reads so far
2011-05-20 00:07:04,656 - INFO - Processed 90800000 reads so far
2011-05-20 00:07:19,385 - INFO - Processed 90900000 reads so far
2011-05-20 00:07:31,071 - INFO - Processed 91000000 reads so far
2011-05-20 00:07:42,378 - INFO - Processed 91100000 reads so far
2011-05-20 00:07:57,860 - INFO - Processed 91200000 reads so far
2011-05-20 00:08:09,044 - INFO - Processed 91300000 reads so far
2011-05-20 00:08:20,761 - INFO - Processed 91400000 reads so far
2011-05-20 00:08:31,727 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:62990040-83010040
2011-05-20 00:08:34,471 - INFO - Processed 91500000 reads so far
2011-05-20 00:08:45,577 - INFO - Processed 91600000 reads so far
2011-05-20 00:08:58,915 - INFO - Processed 91700000 reads so far
2011-05-20 00:09:11,408 - INFO - Processed 91800000 reads so far
2011-05-20 00:09:21,417 - INFO - Processed 91900000 reads so far
2011-05-20 00:09:30,957 - INFO - Processed 92000000 reads so far
2011-05-20 00:09:42,288 - INFO - Processed 92100000 reads so far
2011-05-20 00:09:51,765 - INFO - Processed 92200000 reads so far
2011-05-20 00:09:59,886 - INFO - Processed 92300000 reads so far
2011-05-20 00:10:09,948 - INFO - Processed 92400000 reads so far
2011-05-20 00:10:11,394 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:82990046-103010046
2011-05-20 00:10:27,991 - INFO - Processed 92500000 reads so far
2011-05-20 00:10:55,169 - INFO - Processed 92600000 reads so far
2011-05-20 00:11:06,277 - INFO - Processed 92700000 reads so far
2011-05-20 00:11:19,739 - INFO - Processed 92800000 reads so far
2011-05-20 00:11:31,203 - INFO - Processed 92900000 reads so far
2011-05-20 00:11:42,790 - INFO - Processed 93000000 reads so far
2011-05-20 00:11:51,091 - INFO - Processed 93100000 reads so far
2011-05-20 00:12:01,366 - INFO - Processed 93200000 reads so far
2011-05-20 00:12:26,086 - INFO - Processed 93300000 reads so far
2011-05-20 00:12:35,344 - INFO - Processed 93400000 reads so far
2011-05-20 00:12:35,801 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:102990054-123010054
2011-05-20 00:12:59,379 - INFO - Processed 93500000 reads so far
2011-05-20 00:13:10,187 - INFO - Processed 93600000 reads so far
2011-05-20 00:13:20,243 - INFO - Processed 93700000 reads so far
2011-05-20 00:13:32,386 - INFO - Processed 93800000 reads so far
2011-05-20 00:13:45,674 - INFO - Processed 93900000 reads so far
2011-05-20 00:13:56,647 - INFO - Processed 94000000 reads so far
2011-05-20 00:14:07,939 - INFO - Processed 94100000 reads so far
2011-05-20 00:14:21,337 - INFO - Processed 94200000 reads so far
2011-05-20 00:14:33,903 - INFO - Processed 94300000 reads so far
2011-05-20 00:14:45,028 - INFO - Processed 94400000 reads so far
2011-05-20 00:14:45,667 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:122990061-143010061
2011-05-20 00:15:10,765 - INFO - Processed 94500000 reads so far
2011-05-20 00:15:21,634 - INFO - Processed 94600000 reads so far
2011-05-20 00:15:34,227 - INFO - Processed 94700000 reads so far
2011-05-20 00:15:45,595 - INFO - Processed 94800000 reads so far
2011-05-20 00:15:57,003 - INFO - Processed 94900000 reads so far
2011-05-20 00:16:08,795 - INFO - Processed 95000000 reads so far
2011-05-20 00:16:19,849 - INFO - Processed 95100000 reads so far
2011-05-20 00:16:30,571 - INFO - Processed 95200000 reads so far
2011-05-20 00:16:43,313 - INFO - Processed 95300000 reads so far
2011-05-20 00:16:54,904 - INFO - Processed 95400000 reads so far
2011-05-20 00:17:06,472 - INFO - Processed 95500000 reads so far
2011-05-20 00:17:13,304 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:142990066-163010066
2011-05-20 00:17:16,887 - INFO - Processed 95600000 reads so far
2011-05-20 00:17:26,057 - INFO - Processed 95700000 reads so far
2011-05-20 00:17:38,300 - INFO - Processed 95800000 reads so far
2011-05-20 00:17:45,626 - INFO - Processed 95900000 reads so far
2011-05-20 00:17:52,962 - INFO - Processed 96000000 reads so far
2011-05-20 00:18:02,022 - INFO - Processed 96100000 reads so far
2011-05-20 00:18:14,091 - INFO - Processed 96200000 reads so far
2011-05-20 00:18:22,714 - INFO - Processed 96300000 reads so far
2011-05-20 00:18:30,650 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4_random:0-20010258
2011-05-20 00:18:31,132 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:2990038-23010038
2011-05-20 00:18:32,125 - INFO - Processed 96400000 reads so far
2011-05-20 00:18:41,007 - INFO - Processed 96500000 reads so far
2011-05-20 00:18:50,993 - INFO - Processed 96600000 reads so far
2011-05-20 00:19:02,384 - INFO - Processed 96700000 reads so far
2011-05-20 00:19:19,726 - INFO - Processed 96800000 reads so far
2011-05-20 00:19:29,500 - INFO - Processed 96900000 reads so far
2011-05-20 00:19:38,199 - INFO - Processed 97000000 reads so far
2011-05-20 00:19:48,023 - INFO - Processed 97100000 reads so far
2011-05-20 00:19:58,174 - INFO - Processed 97200000 reads so far
2011-05-20 00:20:09,935 - INFO - Processed 97300000 reads so far
2011-05-20 00:20:13,905 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:22990041-43010041
2011-05-20 00:20:19,937 - INFO - Processed 97400000 reads so far
2011-05-20 00:20:31,046 - INFO - Processed 97500000 reads so far
2011-05-20 00:20:42,386 - INFO - Processed 97600000 reads so far
2011-05-20 00:20:57,052 - INFO - Processed 97700000 reads so far
2011-05-20 00:21:06,018 - INFO - Processed 97800000 reads so far
2011-05-20 00:21:14,416 - INFO - Processed 97900000 reads so far
2011-05-20 00:21:25,069 - INFO - Processed 98000000 reads so far
2011-05-20 00:21:34,137 - INFO - Processed 98100000 reads so far
2011-05-20 00:21:42,540 - INFO - Processed 98200000 reads so far
2011-05-20 00:21:51,320 - INFO - Processed 98300000 reads so far
2011-05-20 00:22:03,481 - INFO - Processed 98400000 reads so far
2011-05-20 00:22:07,169 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:42990044-63010044
2011-05-20 00:22:16,209 - INFO - Processed 98500000 reads so far
2011-05-20 00:22:30,243 - INFO - Processed 98600000 reads so far
2011-05-20 00:22:42,893 - INFO - Processed 98700000 reads so far
2011-05-20 00:22:56,971 - INFO - Processed 98800000 reads so far
2011-05-20 00:23:09,917 - INFO - Processed 98900000 reads so far
2011-05-20 00:23:26,039 - INFO - Processed 99000000 reads so far
2011-05-20 00:23:38,437 - INFO - Processed 99100000 reads so far
2011-05-20 00:23:49,434 - INFO - Processed 99200000 reads so far
2011-05-20 00:23:59,572 - INFO - Processed 99300000 reads so far
2011-05-20 00:24:05,207 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:62990046-83010046
2011-05-20 00:24:11,180 - INFO - Processed 99400000 reads so far
2011-05-20 00:24:19,898 - INFO - Processed 99500000 reads so far
2011-05-20 00:24:29,857 - INFO - Processed 99600000 reads so far
2011-05-20 00:24:40,517 - INFO - Processed 99700000 reads so far
2011-05-20 00:24:49,746 - INFO - Processed 99800000 reads so far
2011-05-20 00:24:58,341 - INFO - Processed 99900000 reads so far
2011-05-20 00:25:08,488 - INFO - Processed 100000000 reads so far
2011-05-20 00:25:18,638 - INFO - Processed 100100000 reads so far
2011-05-20 00:25:27,238 - INFO - Processed 100200000 reads so far
2011-05-20 00:25:36,730 - INFO - Processed 100300000 reads so far
2011-05-20 00:25:37,234 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:82990048-103010048
2011-05-20 00:25:47,192 - INFO - Processed 100400000 reads so far
2011-05-20 00:25:59,406 - INFO - Processed 100500000 reads so far
2011-05-20 00:26:12,226 - INFO - Processed 100600000 reads so far
2011-05-20 00:26:24,189 - INFO - Processed 100700000 reads so far
2011-05-20 00:26:33,977 - INFO - Processed 100800000 reads so far
2011-05-20 00:26:44,223 - INFO - Processed 100900000 reads so far
2011-05-20 00:26:54,457 - INFO - Processed 101000000 reads so far
2011-05-20 00:27:02,948 - INFO - Processed 101100000 reads so far
2011-05-20 00:27:11,554 - INFO - Processed 101200000 reads so far
2011-05-20 00:27:14,154 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:102990051-123010051
2011-05-20 00:27:21,806 - INFO - Processed 101300000 reads so far
2011-05-20 00:27:33,006 - INFO - Processed 101400000 reads so far
2011-05-20 00:27:43,675 - INFO - Processed 101500000 reads so far
2011-05-20 00:28:03,870 - INFO - Processed 101600000 reads so far
2011-05-20 00:28:30,354 - INFO - Processed 101700000 reads so far
2011-05-20 00:28:41,136 - INFO - Processed 101800000 reads so far
2011-05-20 00:28:51,165 - INFO - Processed 101900000 reads so far
2011-05-20 00:29:05,294 - INFO - Processed 102000000 reads so far
2011-05-20 00:29:14,743 - INFO - Processed 102100000 reads so far
2011-05-20 00:29:23,095 - INFO - Processed 102200000 reads so far
2011-05-20 00:29:31,812 - INFO - Processed 102300000 reads so far
2011-05-20 00:29:41,646 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:122990063-143010063
2011-05-20 00:29:43,955 - INFO - Processed 102400000 reads so far
2011-05-20 00:29:56,038 - INFO - Processed 102500000 reads so far
2011-05-20 00:30:05,720 - INFO - Processed 102600000 reads so far
2011-05-20 00:30:18,589 - INFO - Processed 102700000 reads so far
2011-05-20 00:30:29,558 - INFO - Processed 102800000 reads so far
2011-05-20 00:30:40,096 - INFO - Processed 102900000 reads so far
2011-05-20 00:30:49,337 - INFO - Processed 103000000 reads so far
2011-05-20 00:31:00,390 - INFO - Processed 103100000 reads so far
2011-05-20 00:31:09,925 - INFO - Processed 103200000 reads so far
2011-05-20 00:31:17,616 - INFO - Processed 103300000 reads so far
2011-05-20 00:31:28,946 - INFO - Processed 103400000 reads so far
2011-05-20 00:31:40,102 - INFO - Processed 103500000 reads so far
2011-05-20 00:31:40,208 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:142990064-163010064
2011-05-20 00:31:50,886 - INFO - Processed 103600000 reads so far
2011-05-20 00:32:01,483 - INFO - Processed 103700000 reads so far
2011-05-20 00:32:13,781 - INFO - Processed 103800000 reads so far
2011-05-20 00:32:22,172 - INFO - Processed 103900000 reads so far
2011-05-20 00:32:32,965 - INFO - Processed 104000000 reads so far
2011-05-20 00:32:35,031 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5_random:0-20010324
2011-05-20 00:32:35,379 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:2989991-23009991
2011-05-20 00:32:45,001 - INFO - Processed 104100000 reads so far
2011-05-20 00:32:57,099 - INFO - Processed 104200000 reads so far
2011-05-20 00:33:08,483 - INFO - Processed 104300000 reads so far
2011-05-20 00:33:19,983 - INFO - Processed 104400000 reads so far
2011-05-20 00:33:32,396 - INFO - Processed 104500000 reads so far
2011-05-20 00:33:44,459 - INFO - Processed 104600000 reads so far
2011-05-20 00:33:55,828 - INFO - Processed 104700000 reads so far
2011-05-20 00:34:10,485 - INFO - Processed 104800000 reads so far
2011-05-20 00:34:23,296 - INFO - Processed 104900000 reads so far
2011-05-20 00:34:30,873 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:22989993-43009993
2011-05-20 00:34:36,877 - INFO - Processed 105000000 reads so far
2011-05-20 00:34:48,338 - INFO - Processed 105100000 reads so far
2011-05-20 00:35:00,427 - INFO - Processed 105200000 reads so far
2011-05-20 00:35:11,842 - INFO - Processed 105300000 reads so far
2011-05-20 00:35:23,677 - INFO - Processed 105400000 reads so far
2011-05-20 00:35:33,405 - INFO - Processed 105500000 reads so far
2011-05-20 00:35:44,457 - INFO - Processed 105600000 reads so far
2011-05-20 00:35:52,838 - INFO - Processed 105700000 reads so far
2011-05-20 00:36:02,114 - INFO - Processed 105800000 reads so far
2011-05-20 00:36:11,999 - INFO - Processed 105900000 reads so far
2011-05-20 00:36:18,716 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:42989998-63009998
2011-05-20 00:36:22,241 - INFO - Processed 106000000 reads so far
2011-05-20 00:36:33,889 - INFO - Processed 106100000 reads so far
2011-05-20 00:36:44,167 - INFO - Processed 106200000 reads so far
2011-05-20 00:36:53,609 - INFO - Processed 106300000 reads so far
2011-05-20 00:37:03,003 - INFO - Processed 106400000 reads so far
2011-05-20 00:37:12,777 - INFO - Processed 106500000 reads so far
2011-05-20 00:37:23,787 - INFO - Processed 106600000 reads so far
2011-05-20 00:37:36,073 - INFO - Processed 106700000 reads so far
2011-05-20 00:37:48,108 - INFO - Processed 106800000 reads so far
2011-05-20 00:38:00,392 - INFO - Processed 106900000 reads so far
2011-05-20 00:38:11,687 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:62990002-83010002
2011-05-20 00:38:12,544 - INFO - Processed 107000000 reads so far
2011-05-20 00:38:22,983 - INFO - Processed 107100000 reads so far
2011-05-20 00:38:33,545 - INFO - Processed 107200000 reads so far
2011-05-20 00:38:45,231 - INFO - Processed 107300000 reads so far
2011-05-20 00:38:58,166 - INFO - Processed 107400000 reads so far
2011-05-20 00:39:10,109 - INFO - Processed 107500000 reads so far
2011-05-20 00:39:21,810 - INFO - Processed 107600000 reads so far
2011-05-20 00:39:33,024 - INFO - Processed 107700000 reads so far
2011-05-20 00:39:46,062 - INFO - Processed 107800000 reads so far
2011-05-20 00:39:59,574 - INFO - Processed 107900000 reads so far
2011-05-20 00:40:02,875 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:82990004-103010004
2011-05-20 00:40:11,298 - INFO - Processed 108000000 reads so far
2011-05-20 00:40:23,860 - INFO - Processed 108100000 reads so far
2011-05-20 00:40:35,342 - INFO - Processed 108200000 reads so far
2011-05-20 00:40:47,248 - INFO - Processed 108300000 reads so far
2011-05-20 00:41:00,086 - INFO - Processed 108400000 reads so far
2011-05-20 00:41:12,551 - INFO - Processed 108500000 reads so far
2011-05-20 00:41:22,008 - INFO - Processed 108600000 reads so far
2011-05-20 00:41:33,128 - INFO - Processed 108700000 reads so far
2011-05-20 00:41:47,658 - INFO - Processed 108800000 reads so far
2011-05-20 00:41:58,736 - INFO - Processed 108900000 reads so far
2011-05-20 00:42:10,029 - INFO - Processed 109000000 reads so far
2011-05-20 00:42:12,940 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:102990010-123010010
2011-05-20 00:42:19,974 - INFO - Processed 109100000 reads so far
2011-05-20 00:42:28,848 - INFO - Processed 109200000 reads so far
2011-05-20 00:42:37,702 - INFO - Processed 109300000 reads so far
2011-05-20 00:42:44,622 - INFO - Processed 109400000 reads so far
2011-05-20 00:42:54,164 - INFO - Processed 109500000 reads so far
2011-05-20 00:43:02,951 - INFO - Processed 109600000 reads so far
2011-05-20 00:43:10,319 - INFO - Processed 109700000 reads so far
2011-05-20 00:43:18,205 - INFO - Processed 109800000 reads so far
2011-05-20 00:43:26,447 - INFO - Processed 109900000 reads so far
2011-05-20 00:43:34,376 - INFO - Processed 110000000 reads so far
2011-05-20 00:43:42,112 - INFO - Processed 110100000 reads so far
2011-05-20 00:43:52,033 - INFO - Processed 110200000 reads so far
2011-05-20 00:44:02,562 - INFO - Processed 110300000 reads so far
2011-05-20 00:44:10,465 - INFO - Processed 110400000 reads so far
2011-05-20 00:44:20,246 - INFO - Processed 110500000 reads so far
2011-05-20 00:44:30,711 - INFO - Processed 110600000 reads so far
2011-05-20 00:44:40,947 - INFO - Processed 110700000 reads so far
2011-05-20 00:44:49,485 - INFO - Processed 110800000 reads so far
2011-05-20 00:44:58,539 - INFO - Processed 110900000 reads so far
2011-05-20 00:45:10,116 - INFO - Processed 111000000 reads so far
2011-05-20 00:45:18,803 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:122990011-143010011
2011-05-20 00:45:19,819 - INFO - Processed 111100000 reads so far
2011-05-20 00:45:31,087 - INFO - Processed 111200000 reads so far
2011-05-20 00:45:40,039 - INFO - Processed 111300000 reads so far
2011-05-20 00:45:49,965 - INFO - Processed 111400000 reads so far
2011-05-20 00:45:59,639 - INFO - Processed 111500000 reads so far
2011-05-20 00:46:08,669 - INFO - Processed 111600000 reads so far
2011-05-20 00:46:20,523 - INFO - Processed 111700000 reads so far
2011-05-20 00:46:29,216 - INFO - Processed 111800000 reads so far
2011-05-20 00:46:37,389 - INFO - Processed 111900000 reads so far
2011-05-20 00:46:47,034 - INFO - Processed 112000000 reads so far
2011-05-20 00:46:57,337 - INFO - Processed 112100000 reads so far
2011-05-20 00:47:00,508 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:142990053-163010053
2011-05-20 00:47:07,170 - INFO - Processed 112200000 reads so far
2011-05-20 00:47:16,801 - INFO - Processed 112300000 reads so far
2011-05-20 00:47:26,784 - INFO - Processed 112400000 reads so far
2011-05-20 00:47:34,357 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:2990008-23010008
2011-05-20 00:47:37,782 - INFO - Processed 112500000 reads so far
2011-05-20 00:47:49,466 - INFO - Processed 112600000 reads so far
2011-05-20 00:48:01,317 - INFO - Processed 112700000 reads so far
2011-05-20 00:48:12,363 - INFO - Processed 112800000 reads so far
2011-05-20 00:48:23,512 - INFO - Processed 112900000 reads so far
2011-05-20 00:48:35,340 - INFO - Processed 113000000 reads so far
2011-05-20 00:48:45,866 - INFO - Processed 113100000 reads so far
2011-05-20 00:48:57,735 - INFO - Processed 113200000 reads so far
2011-05-20 00:49:10,153 - INFO - Processed 113300000 reads so far
2011-05-20 00:49:24,697 - INFO - Processed 113400000 reads so far
2011-05-20 00:49:28,097 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:22990050-43010050
2011-05-20 00:49:35,950 - INFO - Processed 113500000 reads so far
2011-05-20 00:49:48,207 - INFO - Processed 113600000 reads so far
2011-05-20 00:50:00,518 - INFO - Processed 113700000 reads so far
2011-05-20 00:50:18,335 - INFO - Processed 113800000 reads so far
2011-05-20 00:50:30,766 - INFO - Processed 113900000 reads so far
2011-05-20 00:50:42,907 - INFO - Processed 114000000 reads so far
2011-05-20 00:50:54,024 - INFO - Processed 114100000 reads so far
2011-05-20 00:51:05,326 - INFO - Processed 114200000 reads so far
2011-05-20 00:51:16,902 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:46351858-66371858
2011-05-20 00:51:18,033 - INFO - Processed 114300000 reads so far
2011-05-20 00:51:27,750 - INFO - Processed 114400000 reads so far
2011-05-20 00:51:38,853 - INFO - Processed 114500000 reads so far
2011-05-20 00:51:49,542 - INFO - Processed 114600000 reads so far
2011-05-20 00:52:01,083 - INFO - Processed 114700000 reads so far
2011-05-20 00:52:11,171 - INFO - Processed 114800000 reads so far
2011-05-20 00:52:21,894 - INFO - Processed 114900000 reads so far
2011-05-20 00:52:29,764 - INFO - Processed 115000000 reads so far
2011-05-20 00:52:40,392 - INFO - Processed 115100000 reads so far
2011-05-20 00:52:50,635 - INFO - Processed 115200000 reads so far
2011-05-20 00:53:00,751 - INFO - Processed 115300000 reads so far
2011-05-20 00:53:05,427 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:66351957-86371957
2011-05-20 00:53:11,156 - INFO - Processed 115400000 reads so far
2011-05-20 00:53:23,955 - INFO - Processed 115500000 reads so far
2011-05-20 00:53:34,914 - INFO - Processed 115600000 reads so far
2011-05-20 00:53:47,916 - INFO - Processed 115700000 reads so far
2011-05-20 00:53:58,974 - INFO - Processed 115800000 reads so far
2011-05-20 00:54:12,735 - INFO - Processed 115900000 reads so far
2011-05-20 00:54:24,767 - INFO - Processed 116000000 reads so far
2011-05-20 00:54:35,843 - INFO - Processed 116100000 reads so far
2011-05-20 00:54:48,309 - INFO - Processed 116200000 reads so far
2011-05-20 00:55:00,105 - INFO - Processed 116300000 reads so far
2011-05-20 00:55:10,464 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:86351965-106371965
2011-05-20 00:55:11,454 - INFO - Processed 116400000 reads so far
2011-05-20 00:55:25,009 - INFO - Processed 116500000 reads so far
2011-05-20 00:55:36,665 - INFO - Processed 116600000 reads so far
2011-05-20 00:55:49,068 - INFO - Processed 116700000 reads so far
2011-05-20 00:56:01,771 - INFO - Processed 116800000 reads so far
2011-05-20 00:56:16,230 - INFO - Processed 116900000 reads so far
2011-05-20 00:56:28,864 - INFO - Processed 117000000 reads so far
2011-05-20 00:56:39,424 - INFO - Processed 117100000 reads so far
2011-05-20 00:56:52,960 - INFO - Processed 117200000 reads so far
2011-05-20 00:57:06,200 - INFO - Processed 117300000 reads so far
2011-05-20 00:57:17,164 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:106351967-126371967
2011-05-20 00:57:18,037 - INFO - Processed 117400000 reads so far
2011-05-20 00:57:30,916 - INFO - Processed 117500000 reads so far
2011-05-20 00:57:43,192 - INFO - Processed 117600000 reads so far
2011-05-20 00:57:54,974 - INFO - Processed 117700000 reads so far
2011-05-20 00:58:08,774 - INFO - Processed 117800000 reads so far
2011-05-20 00:58:17,044 - INFO - Processed 117900000 reads so far
2011-05-20 00:58:26,559 - INFO - Processed 118000000 reads so far
2011-05-20 00:58:36,017 - INFO - Processed 118100000 reads so far
2011-05-20 00:58:47,370 - INFO - Processed 118200000 reads so far
2011-05-20 00:58:58,642 - INFO - Processed 118300000 reads so far
2011-05-20 00:59:13,930 - INFO - Processed 118400000 reads so far
2011-05-20 00:59:18,271 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:126351988-146371988
2011-05-20 00:59:26,593 - INFO - Processed 118500000 reads so far
2011-05-20 00:59:37,789 - INFO - Processed 118600000 reads so far
2011-05-20 00:59:49,668 - INFO - Processed 118700000 reads so far
2011-05-20 00:59:58,809 - INFO - Processed 118800000 reads so far
2011-05-20 01:00:06,619 - INFO - Processed 118900000 reads so far
2011-05-20 01:00:17,853 - INFO - Processed 119000000 reads so far
2011-05-20 01:00:26,245 - INFO - Processed 119100000 reads so far
2011-05-20 01:00:35,340 - INFO - Processed 119200000 reads so far
2011-05-20 01:00:47,022 - INFO - Processed 119300000 reads so far
2011-05-20 01:00:55,078 - INFO - Processed 119400000 reads so far
2011-05-20 01:01:02,885 - INFO - Processed 119500000 reads so far
2011-05-20 01:01:08,004 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:146352002-166372002
2011-05-20 01:01:10,174 - INFO - Processed 119600000 reads so far
2011-05-20 01:01:23,865 - INFO - Processed 119700000 reads so far
2011-05-20 01:01:34,032 - INFO - Processed 119800000 reads so far
2011-05-20 01:01:45,567 - INFO - Processed 119900000 reads so far
2011-05-20 01:01:51,462 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7_random:0-20010455
2011-05-20 01:01:52,972 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:2990073-23010073
2011-05-20 01:01:57,491 - INFO - Processed 120000000 reads so far
2011-05-20 01:02:10,770 - INFO - Processed 120100000 reads so far
2011-05-20 01:02:22,205 - INFO - Processed 120200000 reads so far
2011-05-20 01:02:33,741 - INFO - Processed 120300000 reads so far
2011-05-20 01:02:47,777 - INFO - Processed 120400000 reads so far
2011-05-20 01:02:55,770 - INFO - Processed 120500000 reads so far
2011-05-20 01:03:06,522 - INFO - Processed 120600000 reads so far
2011-05-20 01:03:19,032 - INFO - Processed 120700000 reads so far
2011-05-20 01:03:30,200 - INFO - Processed 120800000 reads so far
2011-05-20 01:03:40,984 - INFO - Processed 120900000 reads so far
2011-05-20 01:03:51,176 - INFO - Processed 121000000 reads so far
2011-05-20 01:03:54,440 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:22990076-43010076
2011-05-20 01:04:04,054 - INFO - Processed 121100000 reads so far
2011-05-20 01:04:15,379 - INFO - Processed 121200000 reads so far
2011-05-20 01:04:26,852 - INFO - Processed 121300000 reads so far
2011-05-20 01:04:38,496 - INFO - Processed 121400000 reads so far
2011-05-20 01:04:52,437 - INFO - Processed 121500000 reads so far
2011-05-20 01:05:05,674 - INFO - Processed 121600000 reads so far
2011-05-20 01:05:20,329 - INFO - Processed 121700000 reads so far
2011-05-20 01:05:33,865 - INFO - Processed 121800000 reads so far
2011-05-20 01:05:47,379 - INFO - Processed 121900000 reads so far
2011-05-20 01:05:59,423 - INFO - Processed 122000000 reads so far
2011-05-20 01:05:59,436 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:42990088-63010088
2011-05-20 01:06:11,071 - INFO - Processed 122100000 reads so far
2011-05-20 01:06:23,987 - INFO - Processed 122200000 reads so far
2011-05-20 01:06:36,383 - INFO - Processed 122300000 reads so far
2011-05-20 01:06:45,620 - INFO - Processed 122400000 reads so far
2011-05-20 01:06:58,226 - INFO - Processed 122500000 reads so far
2011-05-20 01:07:09,687 - INFO - Processed 122600000 reads so far
2011-05-20 01:07:21,131 - INFO - Processed 122700000 reads so far
2011-05-20 01:07:30,811 - INFO - Processed 122800000 reads so far
2011-05-20 01:07:35,097 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:62990104-83010104
2011-05-20 01:07:40,463 - INFO - Processed 122900000 reads so far
2011-05-20 01:07:52,211 - INFO - Processed 123000000 reads so far
2011-05-20 01:08:02,148 - INFO - Processed 123100000 reads so far
2011-05-20 01:08:12,530 - INFO - Processed 123200000 reads so far
2011-05-20 01:08:22,587 - INFO - Processed 123300000 reads so far
2011-05-20 01:08:34,431 - INFO - Processed 123400000 reads so far
2011-05-20 01:08:42,786 - INFO - Processed 123500000 reads so far
2011-05-20 01:08:51,281 - INFO - Processed 123600000 reads so far
2011-05-20 01:09:01,414 - INFO - Processed 123700000 reads so far
2011-05-20 01:09:11,103 - INFO - Processed 123800000 reads so far
2011-05-20 01:09:16,152 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:82990214-103010214
2011-05-20 01:09:21,840 - INFO - Processed 123900000 reads so far
2011-05-20 01:09:33,271 - INFO - Processed 124000000 reads so far
2011-05-20 01:09:44,125 - INFO - Processed 124100000 reads so far
2011-05-20 01:10:34,740 - INFO - Processed 124200000 reads so far
2011-05-20 01:11:22,931 - INFO - Processed 124300000 reads so far
2011-05-20 01:12:33,586 - INFO - Processed 124400000 reads so far
2011-05-20 01:13:05,972 - INFO - Processed 124500000 reads so far
2011-05-20 01:13:24,608 - INFO - Processed 124600000 reads so far
2011-05-20 01:13:36,595 - INFO - Processed 124700000 reads so far
2011-05-20 01:13:52,362 - INFO - Processed 124800000 reads so far
2011-05-20 01:14:04,154 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:102990218-123010218
2011-05-20 01:14:05,112 - INFO - Processed 124900000 reads so far
2011-05-20 01:14:16,194 - INFO - Processed 125000000 reads so far
2011-05-20 01:14:29,358 - INFO - Processed 125100000 reads so far
2011-05-20 01:14:41,464 - INFO - Processed 125200000 reads so far
2011-05-20 01:14:53,016 - INFO - Processed 125300000 reads so far
2011-05-20 01:15:04,651 - INFO - Processed 125400000 reads so far
2011-05-20 01:15:16,138 - INFO - Processed 125500000 reads so far
2011-05-20 01:15:28,491 - INFO - Processed 125600000 reads so far
2011-05-20 01:15:41,358 - INFO - Processed 125700000 reads so far
2011-05-20 01:15:52,722 - INFO - Processed 125800000 reads so far
2011-05-20 01:16:05,138 - INFO - Processed 125900000 reads so far
2011-05-20 01:16:12,117 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:122990240-143010240
2011-05-20 01:16:16,300 - INFO - Processed 126000000 reads so far
2011-05-20 01:16:28,433 - INFO - Processed 126100000 reads so far
2011-05-20 01:16:41,963 - INFO - Processed 126200000 reads so far
2011-05-20 01:16:52,586 - INFO - Processed 126300000 reads so far
2011-05-20 01:17:03,767 - INFO - Processed 126400000 reads so far
2011-05-20 01:17:15,467 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8_random:0-20010002
2011-05-20 01:17:16,028 - INFO - Processed 126500000 reads so far
2011-05-20 01:17:25,582 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:2989964-23009964
2011-05-20 01:17:25,800 - INFO - Processed 126600000 reads so far
2011-05-20 01:17:34,565 - INFO - Processed 126700000 reads so far
2011-05-20 01:17:45,825 - INFO - Processed 126800000 reads so far
2011-05-20 01:17:54,177 - INFO - Processed 126900000 reads so far
2011-05-20 01:18:04,524 - INFO - Processed 127000000 reads so far
2011-05-20 01:18:13,722 - INFO - Processed 127100000 reads so far
2011-05-20 01:18:22,775 - INFO - Processed 127200000 reads so far
2011-05-20 01:18:31,788 - INFO - Processed 127300000 reads so far
2011-05-20 01:18:39,064 - INFO - Processed 127400000 reads so far
2011-05-20 01:18:48,057 - INFO - Processed 127500000 reads so far
2011-05-20 01:18:56,137 - INFO - Processed 127600000 reads so far
2011-05-20 01:19:04,667 - INFO - Processed 127700000 reads so far
2011-05-20 01:19:12,645 - INFO - Processed 127800000 reads so far
2011-05-20 01:19:22,732 - INFO - Processed 127900000 reads so far
2011-05-20 01:19:31,188 - INFO - Processed 128000000 reads so far
2011-05-20 01:19:40,100 - INFO - Processed 128100000 reads so far
2011-05-20 01:19:48,331 - INFO - Processed 128200000 reads so far
2011-05-20 01:20:02,674 - INFO - Processed 128300000 reads so far
2011-05-20 01:20:12,619 - INFO - Processed 128400000 reads so far
2011-05-20 01:20:23,514 - INFO - Processed 128500000 reads so far
2011-05-20 01:20:30,607 - INFO - Processed 128600000 reads so far
2011-05-20 01:20:38,453 - INFO - Processed 128700000 reads so far
2011-05-20 01:20:46,745 - INFO - Processed 128800000 reads so far
2011-05-20 01:20:54,950 - INFO - Processed 128900000 reads so far
2011-05-20 01:21:03,824 - INFO - Processed 129000000 reads so far
2011-05-20 01:21:11,340 - INFO - Processed 129100000 reads so far
2011-05-20 01:21:21,358 - INFO - Processed 129200000 reads so far
2011-05-20 01:21:33,256 - INFO - Processed 129300000 reads so far
2011-05-20 01:21:40,542 - INFO - Processed 129400000 reads so far
2011-05-20 01:21:49,114 - INFO - Processed 129500000 reads so far
2011-05-20 01:21:56,686 - INFO - Processed 129600000 reads so far
2011-05-20 01:22:06,788 - INFO - Processed 129700000 reads so far
2011-05-20 01:22:15,306 - INFO - Processed 129800000 reads so far
2011-05-20 01:22:23,677 - INFO - Processed 129900000 reads so far
2011-05-20 01:22:31,581 - INFO - Processed 130000000 reads so far
2011-05-20 01:22:39,914 - INFO - Processed 130100000 reads so far
2011-05-20 01:22:48,575 - INFO - Processed 130200000 reads so far
2011-05-20 01:22:56,212 - INFO - Processed 130300000 reads so far
2011-05-20 01:23:04,355 - INFO - Processed 130400000 reads so far
2011-05-20 01:23:11,271 - INFO - Processed 130500000 reads so far
2011-05-20 01:23:23,232 - INFO - Processed 130600000 reads so far
2011-05-20 01:23:30,780 - INFO - Processed 130700000 reads so far
2011-05-20 01:23:38,472 - INFO - Processed 130800000 reads so far
2011-05-20 01:23:45,778 - INFO - Processed 130900000 reads so far
2011-05-20 01:23:56,991 - INFO - Processed 131000000 reads so far
2011-05-20 01:24:05,397 - INFO - Processed 131100000 reads so far
2011-05-20 01:24:12,022 - INFO - Processed 131200000 reads so far
2011-05-20 01:24:20,396 - INFO - Processed 131300000 reads so far
2011-05-20 01:24:32,270 - INFO - Processed 131400000 reads so far
2011-05-20 01:24:41,273 - INFO - Processed 131500000 reads so far
2011-05-20 01:24:50,363 - INFO - Processed 131600000 reads so far
2011-05-20 01:24:58,811 - INFO - Processed 131700000 reads so far
2011-05-20 01:25:07,342 - INFO - Processed 131800000 reads so far
2011-05-20 01:25:16,963 - INFO - Processed 131900000 reads so far
2011-05-20 01:25:25,975 - INFO - Processed 132000000 reads so far
2011-05-20 01:25:33,749 - INFO - Processed 132100000 reads so far
2011-05-20 01:25:42,323 - INFO - Processed 132200000 reads so far
2011-05-20 01:25:49,558 - INFO - Processed 132300000 reads so far
2011-05-20 01:25:58,106 - INFO - Processed 132400000 reads so far
2011-05-20 01:26:07,894 - INFO - Processed 132500000 reads so far
2011-05-20 01:26:19,378 - INFO - Processed 132600000 reads so far
2011-05-20 01:26:31,191 - INFO - Processed 132700000 reads so far
2011-05-20 01:26:39,956 - INFO - Processed 132800000 reads so far
2011-05-20 01:26:47,454 - INFO - Processed 132900000 reads so far
2011-05-20 01:26:54,821 - INFO - Processed 133000000 reads so far
2011-05-20 01:27:05,479 - INFO - Processed 133100000 reads so far
2011-05-20 01:27:16,172 - INFO - Processed 133200000 reads so far
2011-05-20 01:27:26,991 - INFO - Processed 133300000 reads so far
2011-05-20 01:27:37,896 - INFO - Processed 133400000 reads so far
2011-05-20 01:27:44,247 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:22989967-43009967
2011-05-20 01:27:48,187 - INFO - Processed 133500000 reads so far
2011-05-20 01:27:58,776 - INFO - Processed 133600000 reads so far
2011-05-20 01:28:10,951 - INFO - Processed 133700000 reads so far
2011-05-20 01:28:22,407 - INFO - Processed 133800000 reads so far
2011-05-20 01:28:34,616 - INFO - Processed 133900000 reads so far
2011-05-20 01:28:43,907 - INFO - Processed 134000000 reads so far
2011-05-20 01:28:54,253 - INFO - Processed 134100000 reads so far
2011-05-20 01:29:01,765 - INFO - Processed 134200000 reads so far
2011-05-20 01:29:12,004 - INFO - Processed 134300000 reads so far
2011-05-20 01:29:22,890 - INFO - Processed 134400000 reads so far
2011-05-20 01:29:33,388 - INFO - Processed 134500000 reads so far
2011-05-20 01:29:42,907 - INFO - Processed 134600000 reads so far
2011-05-20 01:29:44,618 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:42989968-63009968
2011-05-20 01:29:52,937 - INFO - Processed 134700000 reads so far
2011-05-20 01:30:05,051 - INFO - Processed 134800000 reads so far
2011-05-20 01:30:16,921 - INFO - Processed 134900000 reads so far
2011-05-20 01:30:24,596 - INFO - Processed 135000000 reads so far
2011-05-20 01:30:31,450 - INFO - Processed 135100000 reads so far
2011-05-20 01:30:40,408 - INFO - Processed 135200000 reads so far
2011-05-20 01:30:51,344 - INFO - Processed 135300000 reads so far
2011-05-20 01:31:00,462 - INFO - Processed 135400000 reads so far
2011-05-20 01:31:11,178 - INFO - Processed 135500000 reads so far
2011-05-20 01:31:19,254 - INFO - Processed 135600000 reads so far
2011-05-20 01:31:36,646 - INFO - Processed 135700000 reads so far
2011-05-20 01:31:39,878 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:62989984-83009984
2011-05-20 01:31:47,279 - INFO - Processed 135800000 reads so far
2011-05-20 01:31:59,780 - INFO - Processed 135900000 reads so far
2011-05-20 01:32:10,853 - INFO - Processed 136000000 reads so far
2011-05-20 01:32:18,633 - INFO - Processed 136100000 reads so far
2011-05-20 01:32:30,698 - INFO - Processed 136200000 reads so far
2011-05-20 01:32:43,437 - INFO - Processed 136300000 reads so far
2011-05-20 01:32:51,794 - INFO - Processed 136400000 reads so far
2011-05-20 01:33:03,130 - INFO - Processed 136500000 reads so far
2011-05-20 01:33:12,717 - INFO - Processed 136600000 reads so far
2011-05-20 01:33:23,717 - INFO - Processed 136700000 reads so far
2011-05-20 01:33:29,206 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:82990009-103010009
2011-05-20 01:33:34,028 - INFO - Processed 136800000 reads so far
2011-05-20 01:33:44,607 - INFO - Processed 136900000 reads so far
2011-05-20 01:33:55,672 - INFO - Processed 137000000 reads so far
2011-05-20 01:34:05,912 - INFO - Processed 137100000 reads so far
2011-05-20 01:34:16,669 - INFO - Processed 137200000 reads so far
2011-05-20 01:34:28,765 - INFO - Processed 137300000 reads so far
2011-05-20 01:34:39,548 - INFO - Processed 137400000 reads so far
2011-05-20 01:34:49,257 - INFO - Processed 137500000 reads so far
2011-05-20 01:35:00,170 - INFO - Processed 137600000 reads so far
2011-05-20 01:35:10,863 - INFO - Processed 137700000 reads so far
2011-05-20 01:35:18,922 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:102990040-123010040
2011-05-20 01:35:21,959 - INFO - Processed 137800000 reads so far
2011-05-20 01:35:31,429 - INFO - Processed 137900000 reads so far
2011-05-20 01:35:41,736 - INFO - Processed 138000000 reads so far
2011-05-20 01:35:53,903 - INFO - Processed 138100000 reads so far
2011-05-20 01:36:05,151 - INFO - Processed 138200000 reads so far
2011-05-20 01:36:15,968 - INFO - Processed 138300000 reads so far
2011-05-20 01:36:27,359 - INFO - Processed 138400000 reads so far
2011-05-20 01:36:36,352 - INFO - Processed 138500000 reads so far
2011-05-20 01:36:45,664 - INFO - Processed 138600000 reads so far
2011-05-20 01:36:55,892 - INFO - Processed 138700000 reads so far
2011-05-20 01:37:06,560 - INFO - Processed 138800000 reads so far
2011-05-20 01:37:15,175 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:122990078-143010078
2011-05-20 01:37:15,417 - INFO - Processed 138900000 reads so far
2011-05-20 01:37:20,500 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9_random:0-20010005
2011-05-20 01:37:23,563 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrM:0-20010000
2011-05-20 01:37:24,643 - INFO - Processed 139000000 reads so far
2011-05-20 01:37:31,141 - INFO - Processed 139100000 reads so far
2011-05-20 01:37:33,117 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrUn_random:0-20010001
2011-05-20 01:37:40,827 - INFO - Processed 139200000 reads so far
2011-05-20 01:37:47,811 - INFO - Processed 139300000 reads so far
2011-05-20 01:37:57,830 - INFO - Processed 139400000 reads so far
2011-05-20 01:38:06,657 - INFO - Processed 139500000 reads so far
2011-05-20 01:38:07,997 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:2990013-23010013
2011-05-20 01:38:13,825 - INFO - Processed 139600000 reads so far
2011-05-20 01:38:19,995 - INFO - Processed 139700000 reads so far
2011-05-20 01:38:29,201 - INFO - Processed 139800000 reads so far
2011-05-20 01:38:41,372 - INFO - Processed 139900000 reads so far
2011-05-20 01:38:51,140 - INFO - Processed 140000000 reads so far
2011-05-20 01:39:00,627 - INFO - Processed 140100000 reads so far
2011-05-20 01:39:11,037 - INFO - Processed 140200000 reads so far
2011-05-20 01:39:19,969 - INFO - Processed 140300000 reads so far
2011-05-20 01:39:26,806 - INFO - Processed 140400000 reads so far
2011-05-20 01:39:33,655 - INFO - Processed 140500000 reads so far
2011-05-20 01:39:43,946 - INFO - Processed 140600000 reads so far
2011-05-20 01:39:45,200 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:22990038-43010038
2011-05-20 01:39:53,025 - INFO - Processed 140700000 reads so far
2011-05-20 01:40:01,366 - INFO - Processed 140800000 reads so far
2011-05-20 01:40:10,942 - INFO - Processed 140900000 reads so far
2011-05-20 01:40:17,512 - INFO - Processed 141000000 reads so far
2011-05-20 01:40:28,328 - INFO - Processed 141100000 reads so far
2011-05-20 01:40:36,862 - INFO - Processed 141200000 reads so far
2011-05-20 01:40:46,555 - INFO - Processed 141300000 reads so far
2011-05-20 01:40:57,205 - INFO - Processed 141400000 reads so far
2011-05-20 01:41:08,427 - INFO - Processed 141500000 reads so far
2011-05-20 01:41:19,369 - INFO - Processed 141600000 reads so far
2011-05-20 01:41:26,496 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:42990055-63010055
2011-05-20 01:41:26,697 - INFO - Processed 141700000 reads so far
2011-05-20 01:41:35,529 - INFO - Processed 141800000 reads so far
2011-05-20 01:41:44,876 - INFO - Processed 141900000 reads so far
2011-05-20 01:41:55,496 - INFO - Processed 142000000 reads so far
2011-05-20 01:42:04,344 - INFO - Processed 142100000 reads so far
2011-05-20 01:42:14,174 - INFO - Processed 142200000 reads so far
2011-05-20 01:42:23,727 - INFO - Processed 142300000 reads so far
2011-05-20 01:42:33,259 - INFO - Processed 142400000 reads so far
2011-05-20 01:42:40,709 - INFO - Processed 142500000 reads so far
2011-05-20 01:42:50,377 - INFO - Processed 142600000 reads so far
2011-05-20 01:42:53,432 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:62990061-83010061
2011-05-20 01:43:01,290 - INFO - Processed 142700000 reads so far
2011-05-20 01:43:10,247 - INFO - Processed 142800000 reads so far
2011-05-20 01:43:19,405 - INFO - Processed 142900000 reads so far
2011-05-20 01:43:27,598 - INFO - Processed 143000000 reads so far
2011-05-20 01:43:35,444 - INFO - Processed 143100000 reads so far
2011-05-20 01:43:43,312 - INFO - Processed 143200000 reads so far
2011-05-20 01:43:53,851 - INFO - Processed 143300000 reads so far
2011-05-20 01:44:02,471 - INFO - Processed 143400000 reads so far
2011-05-20 01:44:09,821 - INFO - Processed 143500000 reads so far
2011-05-20 01:44:18,364 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:82990094-103010094
2011-05-20 01:44:19,967 - INFO - Processed 143600000 reads so far
2011-05-20 01:44:29,433 - INFO - Processed 143700000 reads so far
2011-05-20 01:44:37,374 - INFO - Processed 143800000 reads so far
2011-05-20 01:44:45,440 - INFO - Processed 143900000 reads so far
2011-05-20 01:44:53,636 - INFO - Processed 144000000 reads so far
2011-05-20 01:45:01,372 - INFO - Processed 144100000 reads so far
2011-05-20 01:45:10,258 - INFO - Processed 144200000 reads so far
2011-05-20 01:45:18,694 - INFO - Processed 144300000 reads so far
2011-05-20 01:45:28,407 - INFO - Processed 144400000 reads so far
2011-05-20 01:45:38,100 - INFO - Processed 144500000 reads so far
2011-05-20 01:45:40,601 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:102990097-123010097
2011-05-20 01:45:48,587 - INFO - Processed 144600000 reads so far
2011-05-20 01:45:55,466 - INFO - Processed 144700000 reads so far
2011-05-20 01:46:03,776 - INFO - Processed 144800000 reads so far
2011-05-20 01:46:12,234 - INFO - Processed 144900000 reads so far
2011-05-20 01:46:22,358 - INFO - Processed 145000000 reads so far
2011-05-20 01:46:29,211 - INFO - Processed 145100000 reads so far
2011-05-20 01:46:40,968 - INFO - Processed 145200000 reads so far
2011-05-20 01:46:50,138 - INFO - Processed 145300000 reads so far
2011-05-20 01:46:55,279 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:122990102-143010102
2011-05-20 01:46:56,874 - INFO - Processed 145400000 reads so far
2011-05-20 01:47:03,597 - INFO - Processed 145500000 reads so far
2011-05-20 01:47:11,023 - INFO - Processed 145600000 reads so far
2011-05-20 01:47:17,696 - INFO - Processed 145700000 reads so far
2011-05-20 01:47:26,610 - INFO - Processed 145800000 reads so far
2011-05-20 01:47:35,749 - INFO - Processed 145900000 reads so far
2011-05-20 01:47:44,526 - INFO - Processed 146000000 reads so far
2011-05-20 01:47:51,650 - INFO - Processed 146100000 reads so far
2011-05-20 01:47:59,115 - INFO - Processed 146200000 reads so far
2011-05-20 01:48:07,648 - INFO - Processed 146300000 reads so far
2011-05-20 01:48:14,850 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:142990115-163010115
2011-05-20 01:48:19,874 - INFO - Processed 146400000 reads so far
2011-05-20 01:48:31,476 - INFO - Processed 146500000 reads so far
2011-05-20 01:48:45,833 - INFO - Processed 146600000 reads so far
2011-05-20 01:48:57,417 - INFO - Processed 146700000 reads so far
2011-05-20 01:49:08,667 - INFO - Processed 146800000 reads so far
2011-05-20 01:49:17,609 - INFO - Processed 146900000 reads so far
2011-05-20 01:49:25,465 - INFO - Processed 147000000 reads so far
2011-05-20 01:49:34,535 - INFO - Processed 147100000 reads so far
2011-05-20 01:49:45,512 - INFO - Processed 147200000 reads so far
2011-05-20 01:49:54,809 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:162990125-183010125
2011-05-20 01:49:57,814 - INFO - Processed 147300000 reads so far
2011-05-20 01:50:09,470 - INFO - Processed 147400000 reads so far
2011-05-20 01:50:18,956 - INFO - Processed 147500000 reads so far
2011-05-20 01:50:23,008 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX_random:0-20010000
2011-05-20 01:50:27,883 - INFO - Processed 147600000 reads so far
2011-05-20 01:50:29,122 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY:10529-20030529
2011-05-20 01:50:30,381 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:50185-20070185
2011-05-20 01:50:32,738 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:20164356-40184356
2011-05-20 01:50:34,311 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:40171142-60191142
2011-05-20 01:50:37,222 - INFO - Processed 147700000 reads so far
2011-05-20 01:50:42,034 - INFO - Processed 147800000 reads so far
2011-05-20 01:50:45,975 - INFO - Processed 147900000 reads so far
2011-05-20 01:50:51,542 - INFO - Processed 148000000 reads so far
2011-05-20 01:50:55,051 - INFO - Processed 148100000 reads so far
2011-05-20 01:50:58,322 - INFO - Processed 148200000 reads so far
2011-05-20 01:51:02,258 - INFO - Processed 148300000 reads so far
2011-05-20 01:51:06,235 - INFO - Processed 148400000 reads so far
2011-05-20 01:51:11,891 - INFO - Processed 148500000 reads so far
2011-05-20 01:51:16,361 - INFO - Processed 148600000 reads so far
2011-05-20 01:51:20,761 - INFO - Processed 148700000 reads so far
2011-05-20 01:51:24,864 - INFO - Processed 148800000 reads so far
2011-05-20 01:51:28,819 - INFO - Processed 148900000 reads so far
2011-05-20 01:51:32,665 - INFO - Processed 149000000 reads so far
2011-05-20 01:51:35,775 - INFO - Finished loading data. Outputting QC metrics
2011-05-20 01:51:58,607 - INFO - Finished outputting QC metrics
2011-05-20 01:51:58,707 - INFO - Finished generating QC metrics