2011-05-20 01:51:58,945 - INFO - Generating QC metrics for BAM File ['WTCHG_11825.bam']
2011-05-20 01:51:58,945 - INFO - Output will go to WTCHG_11825.qc.txt.tmp
2011-05-20 01:51:58,945 - INFO - Reading GC Map from file /data/Genomes/gcMap/Mouse37.gcMap.gz
2011-05-20 01:55:05,625 - INFO - Finished reading GC Map
2011-05-20 01:55:05,625 - INFO - Reading CDS from exon definition file /data/Genomes/annotation/Mouse37.refGene.txt.gz
2011-05-20 01:55:08,583 - INFO - Read 382138 exons (33804740 nucleotides) for 32 chromosomes
2011-05-20 01:55:08,584 - INFO - Computing coverage cut-off
2011-05-20 01:55:08,585 - INFO - Retrieving BAM file coverage info from samtools pileup
2011-05-20 01:55:12,956 - INFO - Processed 1000000 pile-up sites
2011-05-20 01:55:16,665 - INFO - Processed 2000000 pile-up sites
2011-05-20 01:55:21,327 - INFO - Processed 3000000 pile-up sites
2011-05-20 01:55:23,836 - INFO - Processed 4000000 pile-up sites
2011-05-20 01:55:26,305 - INFO - Processed 5000000 pile-up sites
2011-05-20 01:55:30,078 - INFO - Processed 6000000 pile-up sites
2011-05-20 01:55:32,530 - INFO - Processed 7000000 pile-up sites
2011-05-20 01:55:34,990 - INFO - Processed 8000000 pile-up sites
2011-05-20 01:55:37,447 - INFO - Processed 9000000 pile-up sites
2011-05-20 01:55:41,160 - INFO - Processed 10000000 pile-up sites
2011-05-20 01:55:45,472 - INFO - Processed 11000000 pile-up sites
2011-05-20 01:55:50,135 - INFO - Processed 12000000 pile-up sites
2011-05-20 01:55:52,796 - INFO - Processed 13000000 pile-up sites
2011-05-20 01:55:55,241 - INFO - Processed 14000000 pile-up sites
2011-05-20 01:55:57,697 - INFO - Processed 15000000 pile-up sites
2011-05-20 01:56:03,879 - INFO - Processed 16000000 pile-up sites
2011-05-20 01:56:08,596 - INFO - Processed 17000000 pile-up sites
2011-05-20 01:56:12,955 - INFO - Processed 18000000 pile-up sites
2011-05-20 01:56:17,499 - INFO - Processed 19000000 pile-up sites
2011-05-20 01:56:21,426 - INFO - Processed 20000000 pile-up sites
2011-05-20 01:56:24,434 - INFO - Processed 21000000 pile-up sites
2011-05-20 01:56:27,902 - INFO - Processed 22000000 pile-up sites
2011-05-20 01:56:31,473 - INFO - Processed 23000000 pile-up sites
2011-05-20 01:56:36,385 - INFO - Processed 24000000 pile-up sites
2011-05-20 01:56:40,435 - INFO - Processed 25000000 pile-up sites
2011-05-20 01:56:44,875 - INFO - Processed 26000000 pile-up sites
2011-05-20 01:56:49,353 - INFO - Processed 27000000 pile-up sites
2011-05-20 01:56:53,254 - INFO - Processed 28000000 pile-up sites
2011-05-20 01:56:57,622 - INFO - Processed 29000000 pile-up sites
2011-05-20 01:57:01,521 - INFO - Processed 30000000 pile-up sites
2011-05-20 01:57:05,426 - INFO - Processed 31000000 pile-up sites
2011-05-20 01:57:10,151 - INFO - Processed 32000000 pile-up sites
2011-05-20 01:57:14,838 - INFO - Processed 33000000 pile-up sites
2011-05-20 01:57:19,181 - INFO - Processed 34000000 pile-up sites
2011-05-20 01:57:23,795 - INFO - Processed 35000000 pile-up sites
2011-05-20 01:57:28,449 - INFO - Processed 36000000 pile-up sites
2011-05-20 01:57:32,785 - INFO - Finished processing pile-up on 36937435 sites (200000003 nucleotides)
2011-05-20 01:57:32,785 - INFO - Coverage cut-off value is 20
2011-05-20 01:57:32,785 - INFO - Loading data into QC data manager
2011-05-20 01:57:33,030 - INFO - Reading data from BAM file WTCHG_11825.bam. All reads in file will be read
2011-05-20 01:57:33,073 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:2990000-23010000
2011-05-20 01:57:44,528 - INFO - Processed 100000 reads so far
2011-05-20 01:57:55,601 - INFO - Processed 200000 reads so far
2011-05-20 01:58:06,541 - INFO - Processed 300000 reads so far
2011-05-20 01:58:15,253 - INFO - Processed 400000 reads so far
2011-05-20 01:58:23,190 - INFO - Processed 500000 reads so far
2011-05-20 01:58:34,418 - INFO - Processed 600000 reads so far
2011-05-20 01:58:45,496 - INFO - Processed 700000 reads so far
2011-05-20 01:58:56,245 - INFO - Processed 800000 reads so far
2011-05-20 01:59:07,222 - INFO - Processed 900000 reads so far
2011-05-20 01:59:18,354 - INFO - Processed 1000000 reads so far
2011-05-20 01:59:24,952 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:22990005-43010005
2011-05-20 01:59:29,319 - INFO - Processed 1100000 reads so far
2011-05-20 01:59:40,267 - INFO - Processed 1200000 reads so far
2011-05-20 01:59:51,402 - INFO - Processed 1300000 reads so far
2011-05-20 02:00:00,056 - INFO - Processed 1400000 reads so far
2011-05-20 02:00:09,978 - INFO - Processed 1500000 reads so far
2011-05-20 02:00:21,046 - INFO - Processed 1600000 reads so far
2011-05-20 02:00:32,121 - INFO - Processed 1700000 reads so far
2011-05-20 02:00:41,240 - INFO - Processed 1800000 reads so far
2011-05-20 02:00:52,254 - INFO - Processed 1900000 reads so far
2011-05-20 02:01:02,787 - INFO - Processed 2000000 reads so far
2011-05-20 02:01:13,014 - INFO - Processed 2100000 reads so far
2011-05-20 02:01:13,455 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:42990057-63010057
2011-05-20 02:01:21,822 - INFO - Processed 2200000 reads so far
2011-05-20 02:01:37,441 - INFO - Processed 2300000 reads so far
2011-05-20 02:01:48,628 - INFO - Processed 2400000 reads so far
2011-05-20 02:02:00,400 - INFO - Processed 2500000 reads so far
2011-05-20 02:02:12,085 - INFO - Processed 2600000 reads so far
2011-05-20 02:02:23,231 - INFO - Processed 2700000 reads so far
2011-05-20 02:02:34,589 - INFO - Processed 2800000 reads so far
2011-05-20 02:02:46,914 - INFO - Processed 2900000 reads so far
2011-05-20 02:02:59,606 - INFO - Processed 3000000 reads so far
2011-05-20 02:03:10,227 - INFO - Processed 3100000 reads so far
2011-05-20 02:03:17,419 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:62990077-83010077
2011-05-20 02:03:21,198 - INFO - Processed 3200000 reads so far
2011-05-20 02:03:30,885 - INFO - Processed 3300000 reads so far
2011-05-20 02:03:39,267 - INFO - Processed 3400000 reads so far
2011-05-20 02:03:48,313 - INFO - Processed 3500000 reads so far
2011-05-20 02:03:59,343 - INFO - Processed 3600000 reads so far
2011-05-20 02:04:09,723 - INFO - Processed 3700000 reads so far
2011-05-20 02:04:19,497 - INFO - Processed 3800000 reads so far
2011-05-20 02:04:29,211 - INFO - Processed 3900000 reads so far
2011-05-20 02:04:38,301 - INFO - Processed 4000000 reads so far
2011-05-20 02:04:49,926 - INFO - Processed 4100000 reads so far
2011-05-20 02:05:00,127 - INFO - Processed 4200000 reads so far
2011-05-20 02:05:05,809 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:82990086-103010086
2011-05-20 02:05:10,951 - INFO - Processed 4300000 reads so far
2011-05-20 02:05:20,574 - INFO - Processed 4400000 reads so far
2011-05-20 02:05:29,945 - INFO - Processed 4500000 reads so far
2011-05-20 02:05:40,592 - INFO - Processed 4600000 reads so far
2011-05-20 02:05:51,492 - INFO - Processed 4700000 reads so far
2011-05-20 02:06:01,266 - INFO - Processed 4800000 reads so far
2011-05-20 02:06:12,253 - INFO - Processed 4900000 reads so far
2011-05-20 02:06:24,864 - INFO - Processed 5000000 reads so far
2011-05-20 02:06:36,407 - INFO - Processed 5100000 reads so far
2011-05-20 02:06:49,211 - INFO - Processed 5200000 reads so far
2011-05-20 02:07:00,516 - INFO - Processed 5300000 reads so far
2011-05-20 02:07:02,424 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:102990093-123010093
2011-05-20 02:07:11,848 - INFO - Processed 5400000 reads so far
2011-05-20 02:07:23,087 - INFO - Processed 5500000 reads so far
2011-05-20 02:07:34,383 - INFO - Processed 5600000 reads so far
2011-05-20 02:07:45,430 - INFO - Processed 5700000 reads so far
2011-05-20 02:07:56,879 - INFO - Processed 5800000 reads so far
2011-05-20 02:08:08,300 - INFO - Processed 5900000 reads so far
2011-05-20 02:08:19,659 - INFO - Processed 6000000 reads so far
2011-05-20 02:08:31,009 - INFO - Processed 6100000 reads so far
2011-05-20 02:08:42,686 - INFO - Processed 6200000 reads so far
2011-05-20 02:08:54,019 - INFO - Processed 6300000 reads so far
2011-05-20 02:08:59,205 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:122990101-143010101
2011-05-20 02:09:05,655 - INFO - Processed 6400000 reads so far
2011-05-20 02:09:17,029 - INFO - Processed 6500000 reads so far
2011-05-20 02:09:28,619 - INFO - Processed 6600000 reads so far
2011-05-20 02:10:10,347 - INFO - Processed 6700000 reads so far
2011-05-20 02:10:11,987 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:2990003-23010003
2011-05-20 02:10:24,396 - INFO - Processed 6800000 reads so far
2011-05-20 02:10:44,367 - INFO - Processed 6900000 reads so far
2011-05-20 02:10:55,069 - INFO - Processed 7000000 reads so far
2011-05-20 02:11:05,724 - INFO - Processed 7100000 reads so far
2011-05-20 02:11:24,815 - INFO - Processed 7200000 reads so far
2011-05-20 02:11:52,746 - INFO - Processed 7300000 reads so far
2011-05-20 02:12:06,617 - INFO - Processed 7400000 reads so far
2011-05-20 02:12:14,739 - INFO - Processed 7500000 reads so far
2011-05-20 02:12:26,224 - INFO - Processed 7600000 reads so far
2011-05-20 02:12:35,640 - INFO - Processed 7700000 reads so far
2011-05-20 02:12:55,403 - INFO - Processed 7800000 reads so far
2011-05-20 02:13:04,994 - INFO - Processed 7900000 reads so far
2011-05-20 02:13:23,847 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:22990019-43010019
2011-05-20 02:13:32,503 - INFO - Processed 8000000 reads so far
2011-05-20 02:13:47,235 - INFO - Processed 8100000 reads so far
2011-05-20 02:13:56,453 - INFO - Processed 8200000 reads so far
2011-05-20 02:14:12,932 - INFO - Processed 8300000 reads so far
2011-05-20 02:14:25,751 - INFO - Processed 8400000 reads so far
2011-05-20 02:14:35,778 - INFO - Processed 8500000 reads so far
2011-05-20 02:14:47,359 - INFO - Processed 8600000 reads so far
2011-05-20 02:15:04,494 - INFO - Processed 8700000 reads so far
2011-05-20 02:15:15,399 - INFO - Processed 8800000 reads so far
2011-05-20 02:15:47,403 - INFO - Processed 8900000 reads so far
2011-05-20 02:16:00,975 - INFO - Processed 9000000 reads so far
2011-05-20 02:16:02,407 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:42990020-63010020
2011-05-20 02:16:11,812 - INFO - Processed 9100000 reads so far
2011-05-20 02:16:22,723 - INFO - Processed 9200000 reads so far
2011-05-20 02:16:33,243 - INFO - Processed 9300000 reads so far
2011-05-20 02:16:42,127 - INFO - Processed 9400000 reads so far
2011-05-20 02:16:52,095 - INFO - Processed 9500000 reads so far
2011-05-20 02:17:01,143 - INFO - Processed 9600000 reads so far
2011-05-20 02:17:11,442 - INFO - Processed 9700000 reads so far
2011-05-20 02:17:19,597 - INFO - Processed 9800000 reads so far
2011-05-20 02:17:27,377 - INFO - Processed 9900000 reads so far
2011-05-20 02:17:35,503 - INFO - Processed 10000000 reads so far
2011-05-20 02:17:44,559 - INFO - Processed 10100000 reads so far
2011-05-20 02:17:48,141 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:62990037-83010037
2011-05-20 02:17:55,148 - INFO - Processed 10200000 reads so far
2011-05-20 02:18:06,296 - INFO - Processed 10300000 reads so far
2011-05-20 02:18:18,220 - INFO - Processed 10400000 reads so far
2011-05-20 02:18:29,677 - INFO - Processed 10500000 reads so far
2011-05-20 02:18:41,788 - INFO - Processed 10600000 reads so far
2011-05-20 02:18:53,324 - INFO - Processed 10700000 reads so far
2011-05-20 02:19:04,959 - INFO - Processed 10800000 reads so far
2011-05-20 02:19:16,611 - INFO - Processed 10900000 reads so far
2011-05-20 02:19:30,803 - INFO - Processed 11000000 reads so far
2011-05-20 02:19:41,066 - INFO - Processed 11100000 reads so far
2011-05-20 02:19:51,225 - INFO - Processed 11200000 reads so far
2011-05-20 02:19:56,505 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:82990081-103010081
2011-05-20 02:20:01,340 - INFO - Processed 11300000 reads so far
2011-05-20 02:20:09,598 - INFO - Processed 11400000 reads so far
2011-05-20 02:20:17,392 - INFO - Processed 11500000 reads so far
2011-05-20 02:20:26,772 - INFO - Processed 11600000 reads so far
2011-05-20 02:20:36,027 - INFO - Processed 11700000 reads so far
2011-05-20 02:20:44,085 - INFO - Processed 11800000 reads so far
2011-05-20 02:20:55,325 - INFO - Processed 11900000 reads so far
2011-05-20 02:21:04,086 - INFO - Processed 12000000 reads so far
2011-05-20 02:21:13,243 - INFO - Processed 12100000 reads so far
2011-05-20 02:21:25,127 - INFO - Processed 12200000 reads so far
2011-05-20 02:21:38,840 - INFO - Processed 12300000 reads so far
2011-05-20 02:21:41,824 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:102990099-123010099
2011-05-20 02:21:50,237 - INFO - Processed 12400000 reads so far
2011-05-20 02:22:01,038 - INFO - Processed 12500000 reads so far
2011-05-20 02:22:11,754 - INFO - Processed 12600000 reads so far
2011-05-20 02:22:23,561 - INFO - Processed 12700000 reads so far
2011-05-20 02:22:34,618 - INFO - Processed 12800000 reads so far
2011-05-20 02:22:45,900 - INFO - Processed 12900000 reads so far
2011-05-20 02:22:57,001 - INFO - Processed 13000000 reads so far
2011-05-20 02:23:08,775 - INFO - Processed 13100000 reads so far
2011-05-20 02:23:16,363 - INFO - Processed 13200000 reads so far
2011-05-20 02:23:26,894 - INFO - Processed 13300000 reads so far
2011-05-20 02:23:38,517 - INFO - Processed 13400000 reads so far
2011-05-20 02:23:39,212 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:2990007-23010007
2011-05-20 02:23:47,137 - INFO - Processed 13500000 reads so far
2011-05-20 02:23:57,056 - INFO - Processed 13600000 reads so far
2011-05-20 02:24:08,670 - INFO - Processed 13700000 reads so far
2011-05-20 02:24:20,274 - INFO - Processed 13800000 reads so far
2011-05-20 02:24:28,342 - INFO - Processed 13900000 reads so far
2011-05-20 02:24:37,254 - INFO - Processed 14000000 reads so far
2011-05-20 02:24:45,917 - INFO - Processed 14100000 reads so far
2011-05-20 02:24:55,369 - INFO - Processed 14200000 reads so far
2011-05-20 02:25:03,690 - INFO - Processed 14300000 reads so far
2011-05-20 02:25:12,550 - INFO - Processed 14400000 reads so far
2011-05-20 02:25:22,289 - INFO - Processed 14500000 reads so far
2011-05-20 02:25:29,288 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:22990196-43010196
2011-05-20 02:25:31,321 - INFO - Processed 14600000 reads so far
2011-05-20 02:25:40,410 - INFO - Processed 14700000 reads so far
2011-05-20 02:25:49,649 - INFO - Processed 14800000 reads so far
2011-05-20 02:25:59,107 - INFO - Processed 14900000 reads so far
2011-05-20 02:26:08,580 - INFO - Processed 15000000 reads so far
2011-05-20 02:26:17,694 - INFO - Processed 15100000 reads so far
2011-05-20 02:26:26,682 - INFO - Processed 15200000 reads so far
2011-05-20 02:26:36,221 - INFO - Processed 15300000 reads so far
2011-05-20 02:26:44,808 - INFO - Processed 15400000 reads so far
2011-05-20 02:26:55,741 - INFO - Processed 15500000 reads so far
2011-05-20 02:27:01,862 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:42990210-63010210
2011-05-20 02:27:04,947 - INFO - Processed 15600000 reads so far
2011-05-20 02:27:13,770 - INFO - Processed 15700000 reads so far
2011-05-20 02:27:23,951 - INFO - Processed 15800000 reads so far
2011-05-20 02:27:33,683 - INFO - Processed 15900000 reads so far
2011-05-20 02:27:44,697 - INFO - Processed 16000000 reads so far
2011-05-20 02:27:56,415 - INFO - Processed 16100000 reads so far
2011-05-20 02:28:07,481 - INFO - Processed 16200000 reads so far
2011-05-20 02:28:18,956 - INFO - Processed 16300000 reads so far
2011-05-20 02:28:30,067 - INFO - Processed 16400000 reads so far
2011-05-20 02:28:41,151 - INFO - Processed 16500000 reads so far
2011-05-20 02:28:50,524 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:62990223-83010223
2011-05-20 02:28:52,584 - INFO - Processed 16600000 reads so far
2011-05-20 02:29:03,140 - INFO - Processed 16700000 reads so far
2011-05-20 02:29:13,625 - INFO - Processed 16800000 reads so far
2011-05-20 02:29:23,484 - INFO - Processed 16900000 reads so far
2011-05-20 02:29:32,799 - INFO - Processed 17000000 reads so far
2011-05-20 02:29:40,211 - INFO - Processed 17100000 reads so far
2011-05-20 02:29:51,213 - INFO - Processed 17200000 reads so far
2011-05-20 02:30:00,820 - INFO - Processed 17300000 reads so far
2011-05-20 02:30:09,982 - INFO - Processed 17400000 reads so far
2011-05-20 02:30:21,229 - INFO - Processed 17500000 reads so far
2011-05-20 02:30:32,891 - INFO - Processed 17600000 reads so far
2011-05-20 02:30:36,772 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:82990279-103010279
2011-05-20 02:30:44,625 - INFO - Processed 17700000 reads so far
2011-05-20 02:30:56,326 - INFO - Processed 17800000 reads so far
2011-05-20 02:31:09,077 - INFO - Processed 17900000 reads so far
2011-05-20 02:31:17,597 - INFO - Processed 18000000 reads so far
2011-05-20 02:31:27,083 - INFO - Processed 18100000 reads so far
2011-05-20 02:31:33,933 - INFO - Processed 18200000 reads so far
2011-05-20 02:31:42,801 - INFO - Processed 18300000 reads so far
2011-05-20 02:31:52,025 - INFO - Processed 18400000 reads so far
2011-05-20 02:32:01,279 - INFO - Processed 18500000 reads so far
2011-05-20 02:32:09,998 - INFO - Processed 18600000 reads so far
2011-05-20 02:32:18,909 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:102990300-123010300
2011-05-20 02:32:19,264 - INFO - Processed 18700000 reads so far
2011-05-20 02:32:27,627 - INFO - Processed 18800000 reads so far
2011-05-20 02:32:37,295 - INFO - Processed 18900000 reads so far
2011-05-20 02:32:45,205 - INFO - Processed 19000000 reads so far
2011-05-20 02:32:53,494 - INFO - Processed 19100000 reads so far
2011-05-20 02:33:02,451 - INFO - Processed 19200000 reads so far
2011-05-20 02:33:11,050 - INFO - Processed 19300000 reads so far
2011-05-20 02:33:20,782 - INFO - Processed 19400000 reads so far
2011-05-20 02:33:30,718 - INFO - Processed 19500000 reads so far
2011-05-20 02:33:38,149 - INFO - Processed 19600000 reads so far
2011-05-20 02:33:46,585 - INFO - Processed 19700000 reads so far
2011-05-20 02:33:54,952 - INFO - Processed 19800000 reads so far
2011-05-20 02:33:56,001 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:2990051-23010051
2011-05-20 02:34:03,875 - INFO - Processed 19900000 reads so far
2011-05-20 02:34:16,490 - INFO - Processed 20000000 reads so far
2011-05-20 02:34:27,487 - INFO - Processed 20100000 reads so far
2011-05-20 02:34:38,793 - INFO - Processed 20200000 reads so far
2011-05-20 02:34:50,001 - INFO - Processed 20300000 reads so far
2011-05-20 02:35:02,280 - INFO - Processed 20400000 reads so far
2011-05-20 02:35:11,651 - INFO - Processed 20500000 reads so far
2011-05-20 02:35:18,702 - INFO - Processed 20600000 reads so far
2011-05-20 02:35:26,019 - INFO - Processed 20700000 reads so far
2011-05-20 02:35:34,286 - INFO - Processed 20800000 reads so far
2011-05-20 02:35:36,918 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:22990072-43010072
2011-05-20 02:35:43,940 - INFO - Processed 20900000 reads so far
2011-05-20 02:35:51,278 - INFO - Processed 21000000 reads so far
2011-05-20 02:35:58,280 - INFO - Processed 21100000 reads so far
2011-05-20 02:36:05,843 - INFO - Processed 21200000 reads so far
2011-05-20 02:36:13,372 - INFO - Processed 21300000 reads so far
2011-05-20 02:36:22,539 - INFO - Processed 21400000 reads so far
2011-05-20 02:36:30,853 - INFO - Processed 21500000 reads so far
2011-05-20 02:36:39,043 - INFO - Processed 21600000 reads so far
2011-05-20 02:36:52,025 - INFO - Processed 21700000 reads so far
2011-05-20 02:36:58,909 - INFO - Processed 21800000 reads so far
2011-05-20 02:37:08,685 - INFO - Processed 21900000 reads so far
2011-05-20 02:37:10,732 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:42990085-63010085
2011-05-20 02:37:16,066 - INFO - Processed 22000000 reads so far
2011-05-20 02:37:23,407 - INFO - Processed 22100000 reads so far
2011-05-20 02:37:32,150 - INFO - Processed 22200000 reads so far
2011-05-20 02:37:40,679 - INFO - Processed 22300000 reads so far
2011-05-20 02:37:49,149 - INFO - Processed 22400000 reads so far
2011-05-20 02:37:58,318 - INFO - Processed 22500000 reads so far
2011-05-20 02:38:06,080 - INFO - Processed 22600000 reads so far
2011-05-20 02:38:14,603 - INFO - Processed 22700000 reads so far
2011-05-20 02:38:24,137 - INFO - Processed 22800000 reads so far
2011-05-20 02:38:31,077 - INFO - Processed 22900000 reads so far
2011-05-20 02:38:39,102 - INFO - Processed 23000000 reads so far
2011-05-20 02:38:43,545 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:62990092-83010092
2011-05-20 02:38:46,995 - INFO - Processed 23100000 reads so far
2011-05-20 02:38:55,486 - INFO - Processed 23200000 reads so far
2011-05-20 02:39:03,087 - INFO - Processed 23300000 reads so far
2011-05-20 02:39:10,190 - INFO - Processed 23400000 reads so far
2011-05-20 02:39:17,878 - INFO - Processed 23500000 reads so far
2011-05-20 02:39:24,683 - INFO - Processed 23600000 reads so far
2011-05-20 02:39:33,060 - INFO - Processed 23700000 reads so far
2011-05-20 02:39:42,831 - INFO - Processed 23800000 reads so far
2011-05-20 02:39:50,313 - INFO - Processed 23900000 reads so far
2011-05-20 02:39:57,146 - INFO - Processed 24000000 reads so far
2011-05-20 02:40:05,501 - INFO - Processed 24100000 reads so far
2011-05-20 02:40:12,211 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:82990115-103010115
2011-05-20 02:40:16,338 - INFO - Processed 24200000 reads so far
2011-05-20 02:40:25,792 - INFO - Processed 24300000 reads so far
2011-05-20 02:40:37,199 - INFO - Processed 24400000 reads so far
2011-05-20 02:40:45,627 - INFO - Processed 24500000 reads so far
2011-05-20 02:40:53,555 - INFO - Processed 24600000 reads so far
2011-05-20 02:41:02,348 - INFO - Processed 24700000 reads so far
2011-05-20 02:41:10,861 - INFO - Processed 24800000 reads so far
2011-05-20 02:41:19,409 - INFO - Processed 24900000 reads so far
2011-05-20 02:41:28,905 - INFO - Processed 25000000 reads so far
2011-05-20 02:41:38,030 - INFO - Processed 25100000 reads so far
2011-05-20 02:41:45,309 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:102990124-123010124
2011-05-20 02:41:47,997 - INFO - Processed 25200000 reads so far
2011-05-20 02:41:57,618 - INFO - Processed 25300000 reads so far
2011-05-20 02:42:07,737 - INFO - Processed 25400000 reads so far
2011-05-20 02:42:16,846 - INFO - Processed 25500000 reads so far
2011-05-20 02:42:27,234 - INFO - Processed 25600000 reads so far
2011-05-20 02:42:35,759 - INFO - Processed 25700000 reads so far
2011-05-20 02:42:44,212 - INFO - Processed 25800000 reads so far
2011-05-20 02:42:52,545 - INFO - Processed 25900000 reads so far
2011-05-20 02:43:03,405 - INFO - Processed 26000000 reads so far
2011-05-20 02:43:09,459 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13_random:0-20010000
2011-05-20 02:43:10,252 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:2990030-23010030
2011-05-20 02:43:11,184 - INFO - Processed 26100000 reads so far
2011-05-20 02:43:20,162 - INFO - Processed 26200000 reads so far
2011-05-20 02:43:28,603 - INFO - Processed 26300000 reads so far
2011-05-20 02:43:37,159 - INFO - Processed 26400000 reads so far
2011-05-20 02:43:46,871 - INFO - Processed 26500000 reads so far
2011-05-20 02:43:58,459 - INFO - Processed 26600000 reads so far
2011-05-20 02:44:08,227 - INFO - Processed 26700000 reads so far
2011-05-20 02:44:17,004 - INFO - Processed 26800000 reads so far
2011-05-20 02:44:28,050 - INFO - Processed 26900000 reads so far
2011-05-20 02:44:37,402 - INFO - Processed 27000000 reads so far
2011-05-20 02:44:46,061 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:22990040-43010040
2011-05-20 02:44:48,665 - INFO - Processed 27100000 reads so far
2011-05-20 02:44:58,317 - INFO - Processed 27200000 reads so far
2011-05-20 02:45:09,927 - INFO - Processed 27300000 reads so far
2011-05-20 02:45:21,125 - INFO - Processed 27400000 reads so far
2011-05-20 02:45:30,858 - INFO - Processed 27500000 reads so far
2011-05-20 02:45:41,128 - INFO - Processed 27600000 reads so far
2011-05-20 02:45:53,169 - INFO - Processed 27700000 reads so far
2011-05-20 02:46:04,177 - INFO - Processed 27800000 reads so far
2011-05-20 02:46:14,914 - INFO - Processed 27900000 reads so far
2011-05-20 02:46:25,181 - INFO - Processed 28000000 reads so far
2011-05-20 02:46:34,267 - INFO - Processed 28100000 reads so far
2011-05-20 02:46:37,364 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:42993195-63013195
2011-05-20 02:46:43,354 - INFO - Processed 28200000 reads so far
2011-05-20 02:46:56,371 - INFO - Processed 28300000 reads so far
2011-05-20 02:47:07,158 - INFO - Processed 28400000 reads so far
2011-05-20 02:47:51,953 - INFO - Processed 28500000 reads so far
2011-05-20 02:48:05,880 - INFO - Processed 28600000 reads so far
2011-05-20 02:48:17,167 - INFO - Processed 28700000 reads so far
2011-05-20 02:48:27,926 - INFO - Processed 28800000 reads so far
2011-05-20 02:48:37,816 - INFO - Processed 28900000 reads so far
2011-05-20 02:48:49,146 - INFO - Processed 29000000 reads so far
2011-05-20 02:49:00,438 - INFO - Processed 29100000 reads so far
2011-05-20 02:49:09,580 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:62993208-83013208
2011-05-20 02:49:12,130 - INFO - Processed 29200000 reads so far
2011-05-20 02:49:23,224 - INFO - Processed 29300000 reads so far
2011-05-20 02:49:34,663 - INFO - Processed 29400000 reads so far
2011-05-20 02:49:46,103 - INFO - Processed 29500000 reads so far
2011-05-20 02:49:57,067 - INFO - Processed 29600000 reads so far
2011-05-20 02:50:08,232 - INFO - Processed 29700000 reads so far
2011-05-20 02:50:18,294 - INFO - Processed 29800000 reads so far
2011-05-20 02:50:28,212 - INFO - Processed 29900000 reads so far
2011-05-20 02:50:38,614 - INFO - Processed 30000000 reads so far
2011-05-20 02:50:48,945 - INFO - Processed 30100000 reads so far
2011-05-20 02:50:58,783 - INFO - Processed 30200000 reads so far
2011-05-20 02:51:07,476 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:82993210-103013210
2011-05-20 02:51:09,449 - INFO - Processed 30300000 reads so far
2011-05-20 02:51:19,001 - INFO - Processed 30400000 reads so far
2011-05-20 02:51:29,703 - INFO - Processed 30500000 reads so far
2011-05-20 02:51:40,392 - INFO - Processed 30600000 reads so far
2011-05-20 02:51:49,083 - INFO - Processed 30700000 reads so far
2011-05-20 02:51:59,712 - INFO - Processed 30800000 reads so far
2011-05-20 02:52:07,878 - INFO - Processed 30900000 reads so far
2011-05-20 02:52:18,891 - INFO - Processed 31000000 reads so far
2011-05-20 02:52:27,948 - INFO - Processed 31100000 reads so far
2011-05-20 02:52:37,761 - INFO - Processed 31200000 reads so far
2011-05-20 02:52:41,816 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:102993236-123013236
2011-05-20 02:52:48,756 - INFO - Processed 31300000 reads so far
2011-05-20 02:52:57,659 - INFO - Processed 31400000 reads so far
2011-05-20 02:53:06,027 - INFO - Processed 31500000 reads so far
2011-05-20 02:53:17,118 - INFO - Processed 31600000 reads so far
2011-05-20 02:53:28,296 - INFO - Processed 31700000 reads so far
2011-05-20 02:53:39,536 - INFO - Processed 31800000 reads so far
2011-05-20 02:53:50,698 - INFO - Processed 31900000 reads so far
2011-05-20 02:54:00,708 - INFO - Processed 32000000 reads so far
2011-05-20 02:54:10,801 - INFO - Processed 32100000 reads so far
2011-05-20 02:54:21,184 - INFO - Processed 32200000 reads so far
2011-05-20 02:54:26,321 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:122993242-143013242
2011-05-20 02:54:31,512 - INFO - Processed 32300000 reads so far
2011-05-20 02:54:37,785 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:2990023-23010023
2011-05-20 02:54:41,566 - INFO - Processed 32400000 reads so far
2011-05-20 02:54:52,512 - INFO - Processed 32500000 reads so far
2011-05-20 02:55:03,995 - INFO - Processed 32600000 reads so far
2011-05-20 02:55:15,550 - INFO - Processed 32700000 reads so far
2011-05-20 02:55:47,497 - INFO - Processed 32800000 reads so far
2011-05-20 02:55:58,737 - INFO - Processed 32900000 reads so far
2011-05-20 02:56:11,533 - INFO - Processed 33000000 reads so far
2011-05-20 02:56:23,333 - INFO - Processed 33100000 reads so far
2011-05-20 02:56:34,550 - INFO - Processed 33200000 reads so far
2011-05-20 02:56:45,937 - INFO - Processed 33300000 reads so far
2011-05-20 02:56:54,795 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:22990029-43010029
2011-05-20 02:56:57,264 - INFO - Processed 33400000 reads so far
2011-05-20 02:57:08,630 - INFO - Processed 33500000 reads so far
2011-05-20 02:57:19,696 - INFO - Processed 33600000 reads so far
2011-05-20 02:57:30,882 - INFO - Processed 33700000 reads so far
2011-05-20 02:57:41,866 - INFO - Processed 33800000 reads so far
2011-05-20 02:57:55,269 - INFO - Processed 33900000 reads so far
2011-05-20 02:58:06,471 - INFO - Processed 34000000 reads so far
2011-05-20 02:58:17,632 - INFO - Processed 34100000 reads so far
2011-05-20 02:58:29,177 - INFO - Processed 34200000 reads so far
2011-05-20 02:58:40,625 - INFO - Processed 34300000 reads so far
2011-05-20 02:58:51,795 - INFO - Processed 34400000 reads so far
2011-05-20 02:58:58,003 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:42990090-63010090
2011-05-20 02:59:04,542 - INFO - Processed 34500000 reads so far
2011-05-20 02:59:15,774 - INFO - Processed 34600000 reads so far
2011-05-20 02:59:26,889 - INFO - Processed 34700000 reads so far
2011-05-20 02:59:38,658 - INFO - Processed 34800000 reads so far
2011-05-20 02:59:50,389 - INFO - Processed 34900000 reads so far
2011-05-20 03:00:01,493 - INFO - Processed 35000000 reads so far
2011-05-20 03:00:12,473 - INFO - Processed 35100000 reads so far
2011-05-20 03:00:23,871 - INFO - Processed 35200000 reads so far
2011-05-20 03:00:35,002 - INFO - Processed 35300000 reads so far
2011-05-20 03:00:46,112 - INFO - Processed 35400000 reads so far
2011-05-20 03:00:55,345 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:62990159-83010159
2011-05-20 03:00:57,837 - INFO - Processed 35500000 reads so far
2011-05-20 03:01:09,133 - INFO - Processed 35600000 reads so far
2011-05-20 03:01:20,333 - INFO - Processed 35700000 reads so far
2011-05-20 03:01:34,534 - INFO - Processed 35800000 reads so far
2011-05-20 03:01:47,161 - INFO - Processed 35900000 reads so far
2011-05-20 03:01:58,528 - INFO - Processed 36000000 reads so far
2011-05-20 03:02:09,527 - INFO - Processed 36100000 reads so far
2011-05-20 03:02:20,460 - INFO - Processed 36200000 reads so far
2011-05-20 03:02:32,336 - INFO - Processed 36300000 reads so far
2011-05-20 03:02:43,688 - INFO - Processed 36400000 reads so far
2011-05-20 03:02:55,001 - INFO - Processed 36500000 reads so far
2011-05-20 03:03:06,424 - INFO - Processed 36600000 reads so far
2011-05-20 03:03:10,722 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:82990174-103010174
2011-05-20 03:03:17,902 - INFO - Processed 36700000 reads so far
2011-05-20 03:03:29,498 - INFO - Processed 36800000 reads so far
2011-05-20 03:03:40,461 - INFO - Processed 36900000 reads so far
2011-05-20 03:03:51,965 - INFO - Processed 37000000 reads so far
2011-05-20 03:04:03,479 - INFO - Processed 37100000 reads so far
2011-05-20 03:04:14,712 - INFO - Processed 37200000 reads so far
2011-05-20 03:04:28,178 - INFO - Processed 37300000 reads so far
2011-05-20 03:04:39,370 - INFO - Processed 37400000 reads so far
2011-05-20 03:04:50,558 - INFO - Processed 37500000 reads so far
2011-05-20 03:05:02,495 - INFO - Processed 37600000 reads so far
2011-05-20 03:05:13,915 - INFO - Processed 37700000 reads so far
2011-05-20 03:05:22,261 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:102990183-123010183
2011-05-20 03:05:25,725 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:2990052-23010052
2011-05-20 03:05:26,384 - INFO - Processed 37800000 reads so far
2011-05-20 03:05:38,855 - INFO - Processed 37900000 reads so far
2011-05-20 03:05:47,411 - INFO - Processed 38000000 reads so far
2011-05-20 03:05:57,994 - INFO - Processed 38100000 reads so far
2011-05-20 03:06:05,031 - INFO - Processed 38200000 reads so far
2011-05-20 03:06:14,163 - INFO - Processed 38300000 reads so far
2011-05-20 03:06:21,651 - INFO - Processed 38400000 reads so far
2011-05-20 03:06:30,627 - INFO - Processed 38500000 reads so far
2011-05-20 03:06:38,080 - INFO - Processed 38600000 reads so far
2011-05-20 03:06:46,609 - INFO - Processed 38700000 reads so far
2011-05-20 03:06:54,291 - INFO - Processed 38800000 reads so far
2011-05-20 03:07:03,323 - INFO - Processed 38900000 reads so far
2011-05-20 03:07:07,425 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:22990056-43010056
2011-05-20 03:07:12,045 - INFO - Processed 39000000 reads so far
2011-05-20 03:07:21,107 - INFO - Processed 39100000 reads so far
2011-05-20 03:07:29,692 - INFO - Processed 39200000 reads so far
2011-05-20 03:07:37,956 - INFO - Processed 39300000 reads so far
2011-05-20 03:07:45,114 - INFO - Processed 39400000 reads so far
2011-05-20 03:07:53,773 - INFO - Processed 39500000 reads so far
2011-05-20 03:08:02,133 - INFO - Processed 39600000 reads so far
2011-05-20 03:08:09,475 - INFO - Processed 39700000 reads so far
2011-05-20 03:08:18,351 - INFO - Processed 39800000 reads so far
2011-05-20 03:08:25,755 - INFO - Processed 39900000 reads so far
2011-05-20 03:08:33,205 - INFO - Processed 40000000 reads so far
2011-05-20 03:08:35,070 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:42990061-63010061
2011-05-20 03:08:41,349 - INFO - Processed 40100000 reads so far
2011-05-20 03:08:50,353 - INFO - Processed 40200000 reads so far
2011-05-20 03:08:58,923 - INFO - Processed 40300000 reads so far
2011-05-20 03:09:06,784 - INFO - Processed 40400000 reads so far
2011-05-20 03:09:15,041 - INFO - Processed 40500000 reads so far
2011-05-20 03:09:23,338 - INFO - Processed 40600000 reads so far
2011-05-20 03:09:30,231 - INFO - Processed 40700000 reads so far
2011-05-20 03:09:37,614 - INFO - Processed 40800000 reads so far
2011-05-20 03:09:45,108 - INFO - Processed 40900000 reads so far
2011-05-20 03:09:54,620 - INFO - Processed 41000000 reads so far
2011-05-20 03:09:57,330 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:62990103-83010103
2011-05-20 03:10:01,694 - INFO - Processed 41100000 reads so far
2011-05-20 03:10:10,792 - INFO - Processed 41200000 reads so far
2011-05-20 03:10:19,016 - INFO - Processed 41300000 reads so far
2011-05-20 03:10:27,775 - INFO - Processed 41400000 reads so far
2011-05-20 03:10:35,806 - INFO - Processed 41500000 reads so far
2011-05-20 03:10:45,101 - INFO - Processed 41600000 reads so far
2011-05-20 03:10:52,231 - INFO - Processed 41700000 reads so far
2011-05-20 03:11:03,064 - INFO - Processed 41800000 reads so far
2011-05-20 03:11:12,182 - INFO - Processed 41900000 reads so far
2011-05-20 03:11:20,370 - INFO - Processed 42000000 reads so far
2011-05-20 03:11:21,590 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:82990171-103010171
2011-05-20 03:11:28,756 - INFO - Processed 42100000 reads so far
2011-05-20 03:11:37,645 - INFO - Processed 42200000 reads so far
2011-05-20 03:11:44,959 - INFO - Processed 42300000 reads so far
2011-05-20 03:11:53,696 - INFO - Processed 42400000 reads so far
2011-05-20 03:12:00,874 - INFO - Processed 42500000 reads so far
2011-05-20 03:12:09,444 - INFO - Processed 42600000 reads so far
2011-05-20 03:12:17,078 - INFO - Processed 42700000 reads so far
2011-05-20 03:12:24,342 - INFO - Processed 42800000 reads so far
2011-05-20 03:12:29,160 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16_random:0-20010115
2011-05-20 03:12:29,181 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:2989997-23009997
2011-05-20 03:12:32,414 - INFO - Processed 42900000 reads so far
2011-05-20 03:12:39,479 - INFO - Processed 43000000 reads so far
2011-05-20 03:12:48,646 - INFO - Processed 43100000 reads so far
2011-05-20 03:12:55,943 - INFO - Processed 43200000 reads so far
2011-05-20 03:13:03,622 - INFO - Processed 43300000 reads so far
2011-05-20 03:13:12,073 - INFO - Processed 43400000 reads so far
2011-05-20 03:13:21,085 - INFO - Processed 43500000 reads so far
2011-05-20 03:13:30,643 - INFO - Processed 43600000 reads so far
2011-05-20 03:13:39,014 - INFO - Processed 43700000 reads so far
2011-05-20 03:13:45,900 - INFO - Processed 43800000 reads so far
2011-05-20 03:13:56,010 - INFO - Processed 43900000 reads so far
2011-05-20 03:13:59,484 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:22990029-43010029
2011-05-20 03:14:02,888 - INFO - Processed 44000000 reads so far
2011-05-20 03:14:11,465 - INFO - Processed 44100000 reads so far
2011-05-20 03:14:19,842 - INFO - Processed 44200000 reads so far
2011-05-20 03:14:27,906 - INFO - Processed 44300000 reads so far
2011-05-20 03:14:36,332 - INFO - Processed 44400000 reads so far
2011-05-20 03:14:46,626 - INFO - Processed 44500000 reads so far
2011-05-20 03:14:55,294 - INFO - Processed 44600000 reads so far
2011-05-20 03:15:04,941 - INFO - Processed 44700000 reads so far
2011-05-20 03:15:14,500 - INFO - Processed 44800000 reads so far
2011-05-20 03:15:21,486 - INFO - Processed 44900000 reads so far
2011-05-20 03:15:31,970 - INFO - Processed 45000000 reads so far
2011-05-20 03:15:43,923 - INFO - Processed 45100000 reads so far
2011-05-20 03:15:49,423 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:42990041-63010041
2011-05-20 03:15:55,508 - INFO - Processed 45200000 reads so far
2011-05-20 03:16:07,110 - INFO - Processed 45300000 reads so far
2011-05-20 03:16:18,385 - INFO - Processed 45400000 reads so far
2011-05-20 03:16:29,920 - INFO - Processed 45500000 reads so far
2011-05-20 03:16:42,434 - INFO - Processed 45600000 reads so far
2011-05-20 03:16:54,495 - INFO - Processed 45700000 reads so far
2011-05-20 03:17:05,586 - INFO - Processed 45800000 reads so far
2011-05-20 03:17:16,901 - INFO - Processed 45900000 reads so far
2011-05-20 03:17:28,304 - INFO - Processed 46000000 reads so far
2011-05-20 03:17:39,362 - INFO - Processed 46100000 reads so far
2011-05-20 03:17:52,510 - INFO - Processed 46200000 reads so far
2011-05-20 03:17:52,920 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:62990043-83010043
2011-05-20 03:18:05,848 - INFO - Processed 46300000 reads so far
2011-05-20 03:18:16,807 - INFO - Processed 46400000 reads so far
2011-05-20 03:18:28,009 - INFO - Processed 46500000 reads so far
2011-05-20 03:18:37,400 - INFO - Processed 46600000 reads so far
2011-05-20 03:18:48,094 - INFO - Processed 46700000 reads so far
2011-05-20 03:18:57,739 - INFO - Processed 46800000 reads so far
2011-05-20 03:19:08,835 - INFO - Processed 46900000 reads so far
2011-05-20 03:19:18,321 - INFO - Processed 47000000 reads so far
2011-05-20 03:19:26,711 - INFO - Processed 47100000 reads so far
2011-05-20 03:19:38,100 - INFO - Processed 47200000 reads so far
2011-05-20 03:19:46,437 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:82990162-103010162
2011-05-20 03:19:50,312 - INFO - Processed 47300000 reads so far
2011-05-20 03:20:00,416 - INFO - Processed 47400000 reads so far
2011-05-20 03:20:10,611 - INFO - Processed 47500000 reads so far
2011-05-20 03:20:20,834 - INFO - Processed 47600000 reads so far
2011-05-20 03:20:32,241 - INFO - Processed 47700000 reads so far
2011-05-20 03:20:41,805 - INFO - Processed 47800000 reads so far
2011-05-20 03:20:51,349 - INFO - Processed 47900000 reads so far
2011-05-20 03:20:53,893 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17_random:0-20010012
2011-05-20 03:20:55,290 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:2990024-23010024
2011-05-20 03:21:01,029 - INFO - Processed 48000000 reads so far
2011-05-20 03:21:13,409 - INFO - Processed 48100000 reads so far
2011-05-20 03:21:22,452 - INFO - Processed 48200000 reads so far
2011-05-20 03:21:32,737 - INFO - Processed 48300000 reads so far
2011-05-20 03:21:40,102 - INFO - Processed 48400000 reads so far
2011-05-20 03:21:49,618 - INFO - Processed 48500000 reads so far
2011-05-20 03:22:00,982 - INFO - Processed 48600000 reads so far
2011-05-20 03:22:13,058 - INFO - Processed 48700000 reads so far
2011-05-20 03:22:24,318 - INFO - Processed 48800000 reads so far
2011-05-20 03:22:35,536 - INFO - Processed 48900000 reads so far
2011-05-20 03:22:47,841 - INFO - Processed 49000000 reads so far
2011-05-20 03:22:51,405 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:22990099-43010099
2011-05-20 03:22:59,471 - INFO - Processed 49100000 reads so far
2011-05-20 03:23:10,992 - INFO - Processed 49200000 reads so far
2011-05-20 03:23:22,176 - INFO - Processed 49300000 reads so far
2011-05-20 03:23:33,770 - INFO - Processed 49400000 reads so far
2011-05-20 03:23:44,816 - INFO - Processed 49500000 reads so far
2011-05-20 03:23:55,956 - INFO - Processed 49600000 reads so far
2011-05-20 03:24:07,198 - INFO - Processed 49700000 reads so far
2011-05-20 03:24:18,356 - INFO - Processed 49800000 reads so far
2011-05-20 03:24:29,498 - INFO - Processed 49900000 reads so far
2011-05-20 03:24:40,485 - INFO - Processed 50000000 reads so far
2011-05-20 03:24:51,551 - INFO - Processed 50100000 reads so far
2011-05-20 03:24:52,536 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:42990113-63010113
2011-05-20 03:25:02,835 - INFO - Processed 50200000 reads so far
2011-05-20 03:25:14,639 - INFO - Processed 50300000 reads so far
2011-05-20 03:25:26,358 - INFO - Processed 50400000 reads so far
2011-05-20 03:25:38,690 - INFO - Processed 50500000 reads so far
2011-05-20 03:25:49,690 - INFO - Processed 50600000 reads so far
2011-05-20 03:26:00,907 - INFO - Processed 50700000 reads so far
2011-05-20 03:26:11,813 - INFO - Processed 50800000 reads so far
2011-05-20 03:26:23,963 - INFO - Processed 50900000 reads so far
2011-05-20 03:26:35,123 - INFO - Processed 51000000 reads so far
2011-05-20 03:26:46,456 - INFO - Processed 51100000 reads so far
2011-05-20 03:26:53,832 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:62990129-83010129
2011-05-20 03:26:58,053 - INFO - Processed 51200000 reads so far
2011-05-20 03:27:09,189 - INFO - Processed 51300000 reads so far
2011-05-20 03:27:20,343 - INFO - Processed 51400000 reads so far
2011-05-20 03:27:31,881 - INFO - Processed 51500000 reads so far
2011-05-20 03:27:43,137 - INFO - Processed 51600000 reads so far
2011-05-20 03:27:54,686 - INFO - Processed 51700000 reads so far
2011-05-20 03:28:05,158 - INFO - Processed 51800000 reads so far
2011-05-20 03:28:14,335 - INFO - Processed 51900000 reads so far
2011-05-20 03:28:21,472 - INFO - Processed 52000000 reads so far
2011-05-20 03:28:28,565 - INFO - Processed 52100000 reads so far
2011-05-20 03:28:38,196 - INFO - Processed 52200000 reads so far
2011-05-20 03:28:41,501 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:82990170-103010170
2011-05-20 03:28:45,277 - INFO - Processed 52300000 reads so far
2011-05-20 03:28:54,290 - INFO - Processed 52400000 reads so far
2011-05-20 03:29:05,376 - INFO - Processed 52500000 reads so far
2011-05-20 03:29:18,774 - INFO - Processed 52600000 reads so far
2011-05-20 03:29:25,568 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:2990001-23010001
2011-05-20 03:29:29,924 - INFO - Processed 52700000 reads so far
2011-05-20 03:29:38,592 - INFO - Processed 52800000 reads so far
2011-05-20 03:29:48,972 - INFO - Processed 52900000 reads so far
2011-05-20 03:30:01,067 - INFO - Processed 53000000 reads so far
2011-05-20 03:30:12,140 - INFO - Processed 53100000 reads so far
2011-05-20 03:30:23,173 - INFO - Processed 53200000 reads so far
2011-05-20 03:30:35,765 - INFO - Processed 53300000 reads so far
2011-05-20 03:30:46,617 - INFO - Processed 53400000 reads so far
2011-05-20 03:30:57,676 - INFO - Processed 53500000 reads so far
2011-05-20 03:31:09,349 - INFO - Processed 53600000 reads so far
2011-05-20 03:31:20,376 - INFO - Processed 53700000 reads so far
2011-05-20 03:31:22,103 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:22990009-43010009
2011-05-20 03:31:31,662 - INFO - Processed 53800000 reads so far
2011-05-20 03:31:41,895 - INFO - Processed 53900000 reads so far
2011-05-20 03:31:51,541 - INFO - Processed 54000000 reads so far
2011-05-20 03:32:00,579 - INFO - Processed 54100000 reads so far
2011-05-20 03:32:10,021 - INFO - Processed 54200000 reads so far
2011-05-20 03:32:19,244 - INFO - Processed 54300000 reads so far
2011-05-20 03:32:27,686 - INFO - Processed 54400000 reads so far
2011-05-20 03:32:37,707 - INFO - Processed 54500000 reads so far
2011-05-20 03:32:46,760 - INFO - Processed 54600000 reads so far
2011-05-20 03:32:57,360 - INFO - Processed 54700000 reads so far
2011-05-20 03:33:03,847 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:42990032-63010032
2011-05-20 03:33:05,911 - INFO - Processed 54800000 reads so far
2011-05-20 03:33:15,172 - INFO - Processed 54900000 reads so far
2011-05-20 03:33:24,151 - INFO - Processed 55000000 reads so far
2011-05-20 03:33:32,572 - INFO - Processed 55100000 reads so far
2011-05-20 03:33:40,870 - INFO - Processed 55200000 reads so far
2011-05-20 03:33:51,269 - INFO - Processed 55300000 reads so far
2011-05-20 03:34:02,460 - INFO - Processed 55400000 reads so far
2011-05-20 03:34:11,957 - INFO - Processed 55500000 reads so far
2011-05-20 03:34:21,290 - INFO - Processed 55600000 reads so far
2011-05-20 03:34:30,163 - INFO - Processed 55700000 reads so far
2011-05-20 03:34:39,378 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:2989973-23009973
2011-05-20 03:34:41,092 - INFO - Processed 55800000 reads so far
2011-05-20 03:34:50,002 - INFO - Processed 55900000 reads so far
2011-05-20 03:34:59,064 - INFO - Processed 56000000 reads so far
2011-05-20 03:35:06,668 - INFO - Processed 56100000 reads so far
2011-05-20 03:35:16,283 - INFO - Processed 56200000 reads so far
2011-05-20 03:35:26,153 - INFO - Processed 56300000 reads so far
2011-05-20 03:35:34,656 - INFO - Processed 56400000 reads so far
2011-05-20 03:35:42,561 - INFO - Processed 56500000 reads so far
2011-05-20 03:35:52,466 - INFO - Processed 56600000 reads so far
2011-05-20 03:36:02,800 - INFO - Processed 56700000 reads so far
2011-05-20 03:36:11,215 - INFO - Processed 56800000 reads so far
2011-05-20 03:36:13,785 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:22989990-43009990
2011-05-20 03:36:20,045 - INFO - Processed 56900000 reads so far
2011-05-20 03:36:27,820 - INFO - Processed 57000000 reads so far
2011-05-20 03:36:36,166 - INFO - Processed 57100000 reads so far
2011-05-20 03:36:44,356 - INFO - Processed 57200000 reads so far
2011-05-20 03:36:51,728 - INFO - Processed 57300000 reads so far
2011-05-20 03:37:03,860 - INFO - Processed 57400000 reads so far
2011-05-20 03:37:11,785 - INFO - Processed 57500000 reads so far
2011-05-20 03:37:21,462 - INFO - Processed 57600000 reads so far
2011-05-20 03:37:29,669 - INFO - Processed 57700000 reads so far
2011-05-20 03:37:36,553 - INFO - Processed 57800000 reads so far
2011-05-20 03:37:42,655 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:42990031-63010031
2011-05-20 03:37:43,457 - INFO - Processed 57900000 reads so far
2011-05-20 03:37:51,770 - INFO - Processed 58000000 reads so far
2011-05-20 03:38:00,204 - INFO - Processed 58100000 reads so far
2011-05-20 03:38:09,953 - INFO - Processed 58200000 reads so far
2011-05-20 03:38:18,426 - INFO - Processed 58300000 reads so far
2011-05-20 03:38:27,648 - INFO - Processed 58400000 reads so far
2011-05-20 03:38:35,862 - INFO - Processed 58500000 reads so far
2011-05-20 03:38:44,799 - INFO - Processed 58600000 reads so far
2011-05-20 03:38:53,297 - INFO - Processed 58700000 reads so far
2011-05-20 03:39:00,808 - INFO - Processed 58800000 reads so far
2011-05-20 03:39:10,336 - INFO - Processed 58900000 reads so far
2011-05-20 03:39:13,068 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:62990061-83010061
2011-05-20 03:39:21,362 - INFO - Processed 59000000 reads so far
2011-05-20 03:39:28,711 - INFO - Processed 59100000 reads so far
2011-05-20 03:39:37,619 - INFO - Processed 59200000 reads so far
2011-05-20 03:39:47,635 - INFO - Processed 59300000 reads so far
2011-05-20 03:39:55,837 - INFO - Processed 59400000 reads so far
2011-05-20 03:40:04,365 - INFO - Processed 59500000 reads so far
2011-05-20 03:40:12,645 - INFO - Processed 59600000 reads so far
2011-05-20 03:40:21,776 - INFO - Processed 59700000 reads so far
2011-05-20 03:40:32,951 - INFO - Processed 59800000 reads so far
2011-05-20 03:40:43,978 - INFO - Processed 59900000 reads so far
2011-05-20 03:40:52,149 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:82990062-103010062
2011-05-20 03:40:53,945 - INFO - Processed 60000000 reads so far
2011-05-20 03:41:01,710 - INFO - Processed 60100000 reads so far
2011-05-20 03:41:11,627 - INFO - Processed 60200000 reads so far
2011-05-20 03:41:20,987 - INFO - Processed 60300000 reads so far
2011-05-20 03:41:30,606 - INFO - Processed 60400000 reads so far
2011-05-20 03:41:41,856 - INFO - Processed 60500000 reads so far
2011-05-20 03:41:52,979 - INFO - Processed 60600000 reads so far
2011-05-20 03:42:04,479 - INFO - Processed 60700000 reads so far
2011-05-20 03:42:19,506 - INFO - Processed 60800000 reads so far
2011-05-20 03:42:30,415 - INFO - Processed 60900000 reads so far
2011-05-20 03:42:40,227 - INFO - Processed 61000000 reads so far
2011-05-20 03:42:45,258 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:102990063-123010063
2011-05-20 03:42:49,596 - INFO - Processed 61100000 reads so far
2011-05-20 03:42:59,980 - INFO - Processed 61200000 reads so far
2011-05-20 03:43:09,781 - INFO - Processed 61300000 reads so far
2011-05-20 03:43:20,037 - INFO - Processed 61400000 reads so far
2011-05-20 03:43:31,217 - INFO - Processed 61500000 reads so far
2011-05-20 03:43:42,302 - INFO - Processed 61600000 reads so far
2011-05-20 03:43:53,129 - INFO - Processed 61700000 reads so far
2011-05-20 03:44:03,990 - INFO - Processed 61800000 reads so far
2011-05-20 03:44:12,992 - INFO - Processed 61900000 reads so far
2011-05-20 03:44:24,088 - INFO - Processed 62000000 reads so far
2011-05-20 03:44:35,170 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:122990080-143010080
2011-05-20 03:44:36,253 - INFO - Processed 62100000 reads so far
2011-05-20 03:44:48,799 - INFO - Processed 62200000 reads so far
2011-05-20 03:44:59,952 - INFO - Processed 62300000 reads so far
2011-05-20 03:45:11,314 - INFO - Processed 62400000 reads so far
2011-05-20 03:45:22,554 - INFO - Processed 62500000 reads so far
2011-05-20 03:45:33,763 - INFO - Processed 62600000 reads so far
2011-05-20 03:45:42,156 - INFO - Processed 62700000 reads so far
2011-05-20 03:45:52,878 - INFO - Processed 62800000 reads so far
2011-05-20 03:46:03,610 - INFO - Processed 62900000 reads so far
2011-05-20 03:46:14,246 - INFO - Processed 63000000 reads so far
2011-05-20 03:46:24,801 - INFO - Processed 63100000 reads so far
2011-05-20 03:46:34,154 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:142990083-163010083
2011-05-20 03:46:36,599 - INFO - Processed 63200000 reads so far
2011-05-20 03:46:46,878 - INFO - Processed 63300000 reads so far
2011-05-20 03:46:56,877 - INFO - Processed 63400000 reads so far
2011-05-20 03:47:06,849 - INFO - Processed 63500000 reads so far
2011-05-20 03:47:16,984 - INFO - Processed 63600000 reads so far
2011-05-20 03:47:25,711 - INFO - Processed 63700000 reads so far
2011-05-20 03:47:36,867 - INFO - Processed 63800000 reads so far
2011-05-20 03:47:46,803 - INFO - Processed 63900000 reads so far
2011-05-20 03:47:57,281 - INFO - Processed 64000000 reads so far
2011-05-20 03:48:07,768 - INFO - Processed 64100000 reads so far
2011-05-20 03:48:18,753 - INFO - Processed 64200000 reads so far
2011-05-20 03:48:18,850 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:162990110-183010110
2011-05-20 03:48:29,216 - INFO - Processed 64300000 reads so far
2011-05-20 03:48:37,794 - INFO - Processed 64400000 reads so far
2011-05-20 03:48:47,657 - INFO - Processed 64500000 reads so far
2011-05-20 03:48:57,455 - INFO - Processed 64600000 reads so far
2011-05-20 03:49:06,747 - INFO - Processed 64700000 reads so far
2011-05-20 03:49:16,766 - INFO - Processed 64800000 reads so far
2011-05-20 03:49:27,003 - INFO - Processed 64900000 reads so far
2011-05-20 03:49:36,488 - INFO - Processed 65000000 reads so far
2011-05-20 03:49:45,399 - INFO - Processed 65100000 reads so far
2011-05-20 03:49:55,317 - INFO - Processed 65200000 reads so far
2011-05-20 03:50:05,193 - INFO - Processed 65300000 reads so far
2011-05-20 03:50:05,428 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:182990125-203010125
2011-05-20 03:50:14,001 - INFO - Processed 65400000 reads so far
2011-05-20 03:50:22,750 - INFO - Processed 65500000 reads so far
2011-05-20 03:50:34,396 - INFO - Processed 65600000 reads so far
2011-05-20 03:50:45,219 - INFO - Processed 65700000 reads so far
2011-05-20 03:50:55,837 - INFO - Processed 65800000 reads so far
2011-05-20 03:51:04,753 - INFO - Processed 65900000 reads so far
2011-05-20 03:51:13,574 - INFO - Processed 66000000 reads so far
2011-05-20 03:51:22,146 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1_random:0-20010000
2011-05-20 03:51:24,201 - INFO - Processed 66100000 reads so far
2011-05-20 03:51:31,782 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:2990000-23010000
2011-05-20 03:51:32,866 - INFO - Processed 66200000 reads so far
2011-05-20 03:51:42,557 - INFO - Processed 66300000 reads so far
2011-05-20 03:51:52,716 - INFO - Processed 66400000 reads so far
2011-05-20 03:52:00,844 - INFO - Processed 66500000 reads so far
2011-05-20 03:52:09,485 - INFO - Processed 66600000 reads so far
2011-05-20 03:52:18,293 - INFO - Processed 66700000 reads so far
2011-05-20 03:52:28,824 - INFO - Processed 66800000 reads so far
2011-05-20 03:52:37,601 - INFO - Processed 66900000 reads so far
2011-05-20 03:52:45,510 - INFO - Processed 67000000 reads so far
2011-05-20 03:52:54,880 - INFO - Processed 67100000 reads so far
2011-05-20 03:53:03,301 - INFO - Processed 67200000 reads so far
2011-05-20 03:53:09,401 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:22990043-43010043
2011-05-20 03:53:12,683 - INFO - Processed 67300000 reads so far
2011-05-20 03:53:20,595 - INFO - Processed 67400000 reads so far
2011-05-20 03:53:28,919 - INFO - Processed 67500000 reads so far
2011-05-20 03:53:38,840 - INFO - Processed 67600000 reads so far
2011-05-20 03:53:50,677 - INFO - Processed 67700000 reads so far
2011-05-20 03:54:00,806 - INFO - Processed 67800000 reads so far
2011-05-20 03:54:09,074 - INFO - Processed 67900000 reads so far
2011-05-20 03:54:17,266 - INFO - Processed 68000000 reads so far
2011-05-20 03:54:25,331 - INFO - Processed 68100000 reads so far
2011-05-20 03:54:34,151 - INFO - Processed 68200000 reads so far
2011-05-20 03:54:43,795 - INFO - Processed 68300000 reads so far
2011-05-20 03:54:52,431 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:42990045-63010045
2011-05-20 03:54:53,187 - INFO - Processed 68400000 reads so far
2011-05-20 03:55:04,205 - INFO - Processed 68500000 reads so far
2011-05-20 03:55:12,467 - INFO - Processed 68600000 reads so far
2011-05-20 03:55:20,334 - INFO - Processed 68700000 reads so far
2011-05-20 03:55:29,841 - INFO - Processed 68800000 reads so far
2011-05-20 03:55:38,872 - INFO - Processed 68900000 reads so far
2011-05-20 03:55:47,995 - INFO - Processed 69000000 reads so far
2011-05-20 03:55:57,507 - INFO - Processed 69100000 reads so far
2011-05-20 03:56:07,278 - INFO - Processed 69200000 reads so far
2011-05-20 03:56:16,733 - INFO - Processed 69300000 reads so far
2011-05-20 03:56:25,143 - INFO - Processed 69400000 reads so far
2011-05-20 03:56:26,733 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:62990069-83010069
2011-05-20 03:56:33,279 - INFO - Processed 69500000 reads so far
2011-05-20 03:56:41,998 - INFO - Processed 69600000 reads so far
2011-05-20 03:56:49,841 - INFO - Processed 69700000 reads so far
2011-05-20 03:56:58,953 - INFO - Processed 69800000 reads so far
2011-05-20 03:57:07,963 - INFO - Processed 69900000 reads so far
2011-05-20 03:57:17,696 - INFO - Processed 70000000 reads so far
2011-05-20 03:57:26,838 - INFO - Processed 70100000 reads so far
2011-05-20 03:57:35,437 - INFO - Processed 70200000 reads so far
2011-05-20 03:57:43,066 - INFO - Processed 70300000 reads so far
2011-05-20 03:57:50,669 - INFO - Processed 70400000 reads so far
2011-05-20 03:57:59,091 - INFO - Processed 70500000 reads so far
2011-05-20 03:58:10,822 - INFO - Processed 70600000 reads so far
2011-05-20 03:58:13,219 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:82990073-103010073
2011-05-20 03:58:19,469 - INFO - Processed 70700000 reads so far
2011-05-20 03:58:27,503 - INFO - Processed 70800000 reads so far
2011-05-20 03:58:55,679 - INFO - Processed 70900000 reads so far
2011-05-20 03:59:06,689 - INFO - Processed 71000000 reads so far
2011-05-20 03:59:15,765 - INFO - Processed 71100000 reads so far
2011-05-20 03:59:24,946 - INFO - Processed 71200000 reads so far
2011-05-20 03:59:35,334 - INFO - Processed 71300000 reads so far
2011-05-20 03:59:44,256 - INFO - Processed 71400000 reads so far
2011-05-20 03:59:52,698 - INFO - Processed 71500000 reads so far
2011-05-20 04:00:02,578 - INFO - Processed 71600000 reads so far
2011-05-20 04:00:08,496 - INFO - Processed 71700000 reads so far
2011-05-20 04:00:16,340 - INFO - Processed 71800000 reads so far
2011-05-20 04:00:25,962 - INFO - Processed 71900000 reads so far
2011-05-20 04:00:37,206 - INFO - Processed 72000000 reads so far
2011-05-20 04:00:45,201 - INFO - Processed 72100000 reads so far
2011-05-20 04:00:56,592 - INFO - Processed 72200000 reads so far
2011-05-20 04:01:05,549 - INFO - Processed 72300000 reads so far
2011-05-20 04:01:15,396 - INFO - Processed 72400000 reads so far
2011-05-20 04:01:25,062 - INFO - Processed 72500000 reads so far
2011-05-20 04:01:35,483 - INFO - Processed 72600000 reads so far
2011-05-20 04:01:46,010 - INFO - Processed 72700000 reads so far
2011-05-20 04:01:53,441 - INFO - Processed 72800000 reads so far
2011-05-20 04:02:02,275 - INFO - Processed 72900000 reads so far
2011-05-20 04:02:10,114 - INFO - Processed 73000000 reads so far
2011-05-20 04:02:17,616 - INFO - Processed 73100000 reads so far
2011-05-20 04:02:25,740 - INFO - Processed 73200000 reads so far
2011-05-20 04:02:33,019 - INFO - Processed 73300000 reads so far
2011-05-20 04:02:40,748 - INFO - Processed 73400000 reads so far
2011-05-20 04:02:51,868 - INFO - Processed 73500000 reads so far
2011-05-20 04:03:02,210 - INFO - Processed 73600000 reads so far
2011-05-20 04:03:11,975 - INFO - Processed 73700000 reads so far
2011-05-20 04:03:18,079 - INFO - Processed 73800000 reads so far
2011-05-20 04:03:25,281 - INFO - Processed 73900000 reads so far
2011-05-20 04:03:34,009 - INFO - Processed 74000000 reads so far
2011-05-20 04:03:42,186 - INFO - Processed 74100000 reads so far
2011-05-20 04:03:50,979 - INFO - Processed 74200000 reads so far
2011-05-20 04:03:58,094 - INFO - Processed 74300000 reads so far
2011-05-20 04:04:07,123 - INFO - Processed 74400000 reads so far
2011-05-20 04:04:15,638 - INFO - Processed 74500000 reads so far
2011-05-20 04:04:24,319 - INFO - Processed 74600000 reads so far
2011-05-20 04:04:32,318 - INFO - Processed 74700000 reads so far
2011-05-20 04:04:44,109 - INFO - Processed 74800000 reads so far
2011-05-20 04:04:53,344 - INFO - Processed 74900000 reads so far
2011-05-20 04:05:03,547 - INFO - Processed 75000000 reads so far
2011-05-20 04:05:11,027 - INFO - Processed 75100000 reads so far
2011-05-20 04:05:18,707 - INFO - Processed 75200000 reads so far
2011-05-20 04:05:26,880 - INFO - Processed 75300000 reads so far
2011-05-20 04:05:34,194 - INFO - Processed 75400000 reads so far
2011-05-20 04:05:40,755 - INFO - Processed 75500000 reads so far
2011-05-20 04:05:47,757 - INFO - Processed 75600000 reads so far
2011-05-20 04:05:54,293 - INFO - Processed 75700000 reads so far
2011-05-20 04:06:01,074 - INFO - Processed 75800000 reads so far
2011-05-20 04:06:07,889 - INFO - Processed 75900000 reads so far
2011-05-20 04:06:14,239 - INFO - Processed 76000000 reads so far
2011-05-20 04:06:20,722 - INFO - Processed 76100000 reads so far
2011-05-20 04:06:28,828 - INFO - Processed 76200000 reads so far
2011-05-20 04:06:36,904 - INFO - Processed 76300000 reads so far
2011-05-20 04:06:44,376 - INFO - Processed 76400000 reads so far
2011-05-20 04:06:52,398 - INFO - Processed 76500000 reads so far
2011-05-20 04:06:59,365 - INFO - Processed 76600000 reads so far
2011-05-20 04:07:05,853 - INFO - Processed 76700000 reads so far
2011-05-20 04:07:14,421 - INFO - Processed 76800000 reads so far
2011-05-20 04:07:20,995 - INFO - Processed 76900000 reads so far
2011-05-20 04:07:27,978 - INFO - Processed 77000000 reads so far
2011-05-20 04:07:34,782 - INFO - Processed 77100000 reads so far
2011-05-20 04:07:42,147 - INFO - Processed 77200000 reads so far
2011-05-20 04:07:49,044 - INFO - Processed 77300000 reads so far
2011-05-20 04:07:56,495 - INFO - Processed 77400000 reads so far
2011-05-20 04:08:04,397 - INFO - Processed 77500000 reads so far
2011-05-20 04:08:11,560 - INFO - Processed 77600000 reads so far
2011-05-20 04:08:17,646 - INFO - Processed 77700000 reads so far
2011-05-20 04:08:24,386 - INFO - Processed 77800000 reads so far
2011-05-20 04:08:31,495 - INFO - Processed 77900000 reads so far
2011-05-20 04:08:38,854 - INFO - Processed 78000000 reads so far
2011-05-20 04:08:48,117 - INFO - Processed 78100000 reads so far
2011-05-20 04:08:55,257 - INFO - Processed 78200000 reads so far
2011-05-20 04:09:03,214 - INFO - Processed 78300000 reads so far
2011-05-20 04:09:11,151 - INFO - Processed 78400000 reads so far
2011-05-20 04:09:18,130 - INFO - Processed 78500000 reads so far
2011-05-20 04:09:25,236 - INFO - Processed 78600000 reads so far
2011-05-20 04:09:34,788 - INFO - Processed 78700000 reads so far
2011-05-20 04:09:44,435 - INFO - Processed 78800000 reads so far
2011-05-20 04:09:54,284 - INFO - Processed 78900000 reads so far
2011-05-20 04:10:03,531 - INFO - Processed 79000000 reads so far
2011-05-20 04:10:12,789 - INFO - Processed 79100000 reads so far
2011-05-20 04:10:22,345 - INFO - Processed 79200000 reads so far
2011-05-20 04:10:32,755 - INFO - Processed 79300000 reads so far
2011-05-20 04:10:42,093 - INFO - Processed 79400000 reads so far
2011-05-20 04:10:51,475 - INFO - Processed 79500000 reads so far
2011-05-20 04:11:00,834 - INFO - Processed 79600000 reads so far
2011-05-20 04:11:11,750 - INFO - Processed 79700000 reads so far
2011-05-20 04:11:22,483 - INFO - Processed 79800000 reads so far
2011-05-20 04:11:31,640 - INFO - Processed 79900000 reads so far
2011-05-20 04:11:41,087 - INFO - Processed 80000000 reads so far
2011-05-20 04:11:51,557 - INFO - Processed 80100000 reads so far
2011-05-20 04:12:00,955 - INFO - Processed 80200000 reads so far
2011-05-20 04:12:10,422 - INFO - Processed 80300000 reads so far
2011-05-20 04:12:22,940 - INFO - Processed 80400000 reads so far
2011-05-20 04:12:32,911 - INFO - Processed 80500000 reads so far
2011-05-20 04:12:42,168 - INFO - Processed 80600000 reads so far
2011-05-20 04:12:53,108 - INFO - Processed 80700000 reads so far
2011-05-20 04:13:03,675 - INFO - Processed 80800000 reads so far
2011-05-20 04:13:13,023 - INFO - Processed 80900000 reads so far
2011-05-20 04:13:22,322 - INFO - Processed 81000000 reads so far
2011-05-20 04:13:33,400 - INFO - Processed 81100000 reads so far
2011-05-20 04:13:42,586 - INFO - Processed 81200000 reads so far
2011-05-20 04:13:52,009 - INFO - Processed 81300000 reads so far
2011-05-20 04:14:01,404 - INFO - Processed 81400000 reads so far
2011-05-20 04:14:12,617 - INFO - Processed 81500000 reads so far
2011-05-20 04:14:22,073 - INFO - Processed 81600000 reads so far
2011-05-20 04:14:31,989 - INFO - Processed 81700000 reads so far
2011-05-20 04:14:41,724 - INFO - Processed 81800000 reads so far
2011-05-20 04:14:53,346 - INFO - Processed 81900000 reads so far
2011-05-20 04:15:04,350 - INFO - Processed 82000000 reads so far
2011-05-20 04:15:05,018 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:102990095-123010095
2011-05-20 04:15:15,953 - INFO - Processed 82100000 reads so far
2011-05-20 04:15:26,866 - INFO - Processed 82200000 reads so far
2011-05-20 04:15:37,689 - INFO - Processed 82300000 reads so far
2011-05-20 04:15:50,310 - INFO - Processed 82400000 reads so far
2011-05-20 04:16:02,360 - INFO - Processed 82500000 reads so far
2011-05-20 04:16:13,545 - INFO - Processed 82600000 reads so far
2011-05-20 04:16:24,765 - INFO - Processed 82700000 reads so far
2011-05-20 04:16:38,574 - INFO - Processed 82800000 reads so far
2011-05-20 04:16:53,436 - INFO - Processed 82900000 reads so far
2011-05-20 04:17:06,517 - INFO - Processed 83000000 reads so far
2011-05-20 04:17:14,164 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:122990152-143010152
2011-05-20 04:17:20,018 - INFO - Processed 83100000 reads so far
2011-05-20 04:17:31,964 - INFO - Processed 83200000 reads so far
2011-05-20 04:17:43,118 - INFO - Processed 83300000 reads so far
2011-05-20 04:17:55,885 - INFO - Processed 83400000 reads so far
2011-05-20 04:18:09,220 - INFO - Processed 83500000 reads so far
2011-05-20 04:18:22,256 - INFO - Processed 83600000 reads so far
2011-05-20 04:18:33,331 - INFO - Processed 83700000 reads so far
2011-05-20 04:18:44,755 - INFO - Processed 83800000 reads so far
2011-05-20 04:18:55,880 - INFO - Processed 83900000 reads so far
2011-05-20 04:19:07,096 - INFO - Processed 84000000 reads so far
2011-05-20 04:19:18,239 - INFO - Processed 84100000 reads so far
2011-05-20 04:19:21,257 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:142990162-163010162
2011-05-20 04:19:30,667 - INFO - Processed 84200000 reads so far
2011-05-20 04:19:40,109 - INFO - Processed 84300000 reads so far
2011-05-20 04:19:48,479 - INFO - Processed 84400000 reads so far
2011-05-20 04:19:57,939 - INFO - Processed 84500000 reads so far
2011-05-20 04:20:07,402 - INFO - Processed 84600000 reads so far
2011-05-20 04:20:20,319 - INFO - Processed 84700000 reads so far
2011-05-20 04:20:32,556 - INFO - Processed 84800000 reads so far
2011-05-20 04:20:42,209 - INFO - Processed 84900000 reads so far
2011-05-20 04:20:53,246 - INFO - Processed 85000000 reads so far
2011-05-20 04:21:00,195 - INFO - Processed 85100000 reads so far
2011-05-20 04:21:10,062 - INFO - Processed 85200000 reads so far
2011-05-20 04:21:12,964 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:162990165-183010165
2011-05-20 04:21:17,441 - INFO - Processed 85300000 reads so far
2011-05-20 04:21:28,021 - INFO - Processed 85400000 reads so far
2011-05-20 04:21:39,887 - INFO - Processed 85500000 reads so far
2011-05-20 04:21:50,437 - INFO - Processed 85600000 reads so far
2011-05-20 04:22:01,534 - INFO - Processed 85700000 reads so far
2011-05-20 04:22:12,965 - INFO - Processed 85800000 reads so far
2011-05-20 04:22:20,987 - INFO - Processed 85900000 reads so far
2011-05-20 04:22:33,687 - INFO - Processed 86000000 reads so far
2011-05-20 04:22:43,808 - INFO - Processed 86100000 reads so far
2011-05-20 04:22:52,576 - INFO - Processed 86200000 reads so far
2011-05-20 04:22:59,514 - INFO - Processed 86300000 reads so far
2011-05-20 04:23:05,828 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:2989995-23009995
2011-05-20 04:23:06,843 - INFO - Processed 86400000 reads so far
2011-05-20 04:23:17,982 - INFO - Processed 86500000 reads so far
2011-05-20 04:23:27,613 - INFO - Processed 86600000 reads so far
2011-05-20 04:23:36,052 - INFO - Processed 86700000 reads so far
2011-05-20 04:23:47,103 - INFO - Processed 86800000 reads so far
2011-05-20 04:23:56,232 - INFO - Processed 86900000 reads so far
2011-05-20 04:24:05,267 - INFO - Processed 87000000 reads so far
2011-05-20 04:24:15,478 - INFO - Processed 87100000 reads so far
2011-05-20 04:24:22,337 - INFO - Processed 87200000 reads so far
2011-05-20 04:24:29,208 - INFO - Processed 87300000 reads so far
2011-05-20 04:24:38,041 - INFO - Processed 87400000 reads so far
2011-05-20 04:24:39,902 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:22990024-43010024
2011-05-20 04:24:47,789 - INFO - Processed 87500000 reads so far
2011-05-20 04:24:59,429 - INFO - Processed 87600000 reads so far
2011-05-20 04:25:09,669 - INFO - Processed 87700000 reads so far
2011-05-20 04:25:20,097 - INFO - Processed 87800000 reads so far
2011-05-20 04:25:28,521 - INFO - Processed 87900000 reads so far
2011-05-20 04:25:37,041 - INFO - Processed 88000000 reads so far
2011-05-20 04:25:47,974 - INFO - Processed 88100000 reads so far
2011-05-20 04:26:00,548 - INFO - Processed 88200000 reads so far
2011-05-20 04:26:11,765 - INFO - Processed 88300000 reads so far
2011-05-20 04:26:18,637 - INFO - Processed 88400000 reads so far
2011-05-20 04:26:29,330 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:42990034-63010034
2011-05-20 04:26:31,034 - INFO - Processed 88500000 reads so far
2011-05-20 04:26:41,659 - INFO - Processed 88600000 reads so far
2011-05-20 04:26:48,998 - INFO - Processed 88700000 reads so far
2011-05-20 04:26:55,944 - INFO - Processed 88800000 reads so far
2011-05-20 04:27:04,829 - INFO - Processed 88900000 reads so far
2011-05-20 04:27:15,132 - INFO - Processed 89000000 reads so far
2011-05-20 04:27:25,199 - INFO - Processed 89100000 reads so far
2011-05-20 04:27:35,489 - INFO - Processed 89200000 reads so far
2011-05-20 04:27:45,725 - INFO - Processed 89300000 reads so far
2011-05-20 04:27:56,777 - INFO - Processed 89400000 reads so far
2011-05-20 04:28:03,618 - INFO - Processed 89500000 reads so far
2011-05-20 04:28:03,874 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:62990231-83010231
2011-05-20 04:28:11,396 - INFO - Processed 89600000 reads so far
2011-05-20 04:28:21,233 - INFO - Processed 89700000 reads so far
2011-05-20 04:28:32,302 - INFO - Processed 89800000 reads so far
2011-05-20 04:28:42,618 - INFO - Processed 89900000 reads so far
2011-05-20 04:28:53,433 - INFO - Processed 90000000 reads so far
2011-05-20 04:29:03,093 - INFO - Processed 90100000 reads so far
2011-05-20 04:29:13,230 - INFO - Processed 90200000 reads so far
2011-05-20 04:29:24,648 - INFO - Processed 90300000 reads so far
2011-05-20 04:29:31,545 - INFO - Processed 90400000 reads so far
2011-05-20 04:29:39,209 - INFO - Processed 90500000 reads so far
2011-05-20 04:29:40,603 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:82990272-103010272
2011-05-20 04:29:47,992 - INFO - Processed 90600000 reads so far
2011-05-20 04:29:57,046 - INFO - Processed 90700000 reads so far
2011-05-20 04:30:06,097 - INFO - Processed 90800000 reads so far
2011-05-20 04:30:13,643 - INFO - Processed 90900000 reads so far
2011-05-20 04:30:24,683 - INFO - Processed 91000000 reads so far
2011-05-20 04:30:35,165 - INFO - Processed 91100000 reads so far
2011-05-20 04:30:51,062 - INFO - Processed 91200000 reads so far
2011-05-20 04:31:00,706 - INFO - Processed 91300000 reads so far
2011-05-20 04:31:08,835 - INFO - Processed 91400000 reads so far
2011-05-20 04:31:17,535 - INFO - Processed 91500000 reads so far
2011-05-20 04:31:26,781 - INFO - Processed 91600000 reads so far
2011-05-20 04:31:27,959 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:102990282-123010282
2011-05-20 04:31:35,772 - INFO - Processed 91700000 reads so far
2011-05-20 04:31:44,959 - INFO - Processed 91800000 reads so far
2011-05-20 04:31:55,504 - INFO - Processed 91900000 reads so far
2011-05-20 04:32:04,730 - INFO - Processed 92000000 reads so far
2011-05-20 04:32:17,168 - INFO - Processed 92100000 reads so far
2011-05-20 04:32:25,966 - INFO - Processed 92200000 reads so far
2011-05-20 04:32:33,928 - INFO - Processed 92300000 reads so far
2011-05-20 04:32:43,374 - INFO - Processed 92400000 reads so far
2011-05-20 04:32:54,673 - INFO - Processed 92500000 reads so far
2011-05-20 04:33:05,229 - INFO - Processed 92600000 reads so far
2011-05-20 04:33:10,481 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:122990340-143010340
2011-05-20 04:33:14,707 - INFO - Processed 92700000 reads so far
2011-05-20 04:33:26,149 - INFO - Processed 92800000 reads so far
2011-05-20 04:33:36,452 - INFO - Processed 92900000 reads so far
2011-05-20 04:33:48,988 - INFO - Processed 93000000 reads so far
2011-05-20 04:33:59,567 - INFO - Processed 93100000 reads so far
2011-05-20 04:34:07,119 - INFO - Processed 93200000 reads so far
2011-05-20 04:34:16,978 - INFO - Processed 93300000 reads so far
2011-05-20 04:34:29,814 - INFO - Processed 93400000 reads so far
2011-05-20 04:34:38,283 - INFO - Processed 93500000 reads so far
2011-05-20 04:34:48,802 - INFO - Processed 93600000 reads so far
2011-05-20 04:34:57,600 - INFO - Processed 93700000 reads so far
2011-05-20 04:34:57,765 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:142990345-163010345
2011-05-20 04:35:06,634 - INFO - Processed 93800000 reads so far
2011-05-20 04:35:14,729 - INFO - Processed 93900000 reads so far
2011-05-20 04:35:24,574 - INFO - Processed 94000000 reads so far
2011-05-20 04:35:33,477 - INFO - Processed 94100000 reads so far
2011-05-20 04:35:42,836 - INFO - Processed 94200000 reads so far
2011-05-20 04:35:54,401 - INFO - Processed 94300000 reads so far
2011-05-20 04:36:04,948 - INFO - Processed 94400000 reads so far
2011-05-20 04:36:15,878 - INFO - Processed 94500000 reads so far
2011-05-20 04:36:22,602 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3_random:0-20010007
2011-05-20 04:36:22,677 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:2989957-23009957
2011-05-20 04:36:23,122 - INFO - Processed 94600000 reads so far
2011-05-20 04:36:33,836 - INFO - Processed 94700000 reads so far
2011-05-20 04:36:45,241 - INFO - Processed 94800000 reads so far
2011-05-20 04:37:00,801 - INFO - Processed 94900000 reads so far
2011-05-20 04:37:15,551 - INFO - Processed 95000000 reads so far
2011-05-20 04:37:26,659 - INFO - Processed 95100000 reads so far
2011-05-20 04:37:33,485 - INFO - Processed 95200000 reads so far
2011-05-20 04:37:41,340 - INFO - Processed 95300000 reads so far
2011-05-20 04:37:52,083 - INFO - Processed 95400000 reads so far
2011-05-20 04:38:01,930 - INFO - Processed 95500000 reads so far
2011-05-20 04:38:10,073 - INFO - Processed 95600000 reads so far
2011-05-20 04:38:16,827 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:22989967-43009967
2011-05-20 04:38:19,791 - INFO - Processed 95700000 reads so far
2011-05-20 04:38:28,658 - INFO - Processed 95800000 reads so far
2011-05-20 04:38:39,889 - INFO - Processed 95900000 reads so far
2011-05-20 04:38:49,323 - INFO - Processed 96000000 reads so far
2011-05-20 04:39:00,141 - INFO - Processed 96100000 reads so far
2011-05-20 04:39:09,749 - INFO - Processed 96200000 reads so far
2011-05-20 04:39:18,771 - INFO - Processed 96300000 reads so far
2011-05-20 04:39:29,011 - INFO - Processed 96400000 reads so far
2011-05-20 04:39:38,139 - INFO - Processed 96500000 reads so far
2011-05-20 04:39:48,288 - INFO - Processed 96600000 reads so far
2011-05-20 04:39:59,081 - INFO - Processed 96700000 reads so far
2011-05-20 04:40:01,657 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:42990012-63010012
2011-05-20 04:40:11,663 - INFO - Processed 96800000 reads so far
2011-05-20 04:40:22,259 - INFO - Processed 96900000 reads so far
2011-05-20 04:40:31,003 - INFO - Processed 97000000 reads so far
2011-05-20 04:40:40,870 - INFO - Processed 97100000 reads so far
2011-05-20 04:40:51,260 - INFO - Processed 97200000 reads so far
2011-05-20 04:41:00,026 - INFO - Processed 97300000 reads so far
2011-05-20 04:41:09,206 - INFO - Processed 97400000 reads so far
2011-05-20 04:41:19,098 - INFO - Processed 97500000 reads so far
2011-05-20 04:41:27,344 - INFO - Processed 97600000 reads so far
2011-05-20 04:41:34,229 - INFO - Processed 97700000 reads so far
2011-05-20 04:41:43,588 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:62990020-83010020
2011-05-20 04:41:46,332 - INFO - Processed 97800000 reads so far
2011-05-20 04:41:54,068 - INFO - Processed 97900000 reads so far
2011-05-20 04:42:04,800 - INFO - Processed 98000000 reads so far
2011-05-20 04:42:14,374 - INFO - Processed 98100000 reads so far
2011-05-20 04:42:24,203 - INFO - Processed 98200000 reads so far
2011-05-20 04:42:32,554 - INFO - Processed 98300000 reads so far
2011-05-20 04:42:42,950 - INFO - Processed 98400000 reads so far
2011-05-20 04:42:52,588 - INFO - Processed 98500000 reads so far
2011-05-20 04:43:03,923 - INFO - Processed 98600000 reads so far
2011-05-20 04:43:11,359 - INFO - Processed 98700000 reads so far
2011-05-20 04:43:22,155 - INFO - Processed 98800000 reads so far
2011-05-20 04:43:27,139 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:82990021-103010021
2011-05-20 04:43:32,160 - INFO - Processed 98900000 reads so far
2011-05-20 04:43:43,232 - INFO - Processed 99000000 reads so far
2011-05-20 04:43:50,920 - INFO - Processed 99100000 reads so far
2011-05-20 04:44:00,669 - INFO - Processed 99200000 reads so far
2011-05-20 04:44:12,250 - INFO - Processed 99300000 reads so far
2011-05-20 04:44:21,689 - INFO - Processed 99400000 reads so far
2011-05-20 04:44:29,987 - INFO - Processed 99500000 reads so far
2011-05-20 04:44:40,792 - INFO - Processed 99600000 reads so far
2011-05-20 04:44:51,493 - INFO - Processed 99700000 reads so far
2011-05-20 04:45:01,872 - INFO - Processed 99800000 reads so far
2011-05-20 04:45:12,755 - INFO - Processed 99900000 reads so far
2011-05-20 04:45:13,187 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:102990029-123010029
2011-05-20 04:45:21,687 - INFO - Processed 100000000 reads so far
2011-05-20 04:45:32,363 - INFO - Processed 100100000 reads so far
2011-05-20 04:45:43,310 - INFO - Processed 100200000 reads so far
2011-05-20 04:45:55,597 - INFO - Processed 100300000 reads so far
2011-05-20 04:46:06,758 - INFO - Processed 100400000 reads so far
2011-05-20 04:46:16,298 - INFO - Processed 100500000 reads so far
2011-05-20 04:46:27,385 - INFO - Processed 100600000 reads so far
2011-05-20 04:46:41,443 - INFO - Processed 100700000 reads so far
2011-05-20 04:46:51,187 - INFO - Processed 100800000 reads so far
2011-05-20 04:47:00,466 - INFO - Processed 100900000 reads so far
2011-05-20 04:47:09,872 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:122990033-143010033
2011-05-20 04:47:11,788 - INFO - Processed 101000000 reads so far
2011-05-20 04:47:20,047 - INFO - Processed 101100000 reads so far
2011-05-20 04:47:31,733 - INFO - Processed 101200000 reads so far
2011-05-20 04:47:42,349 - INFO - Processed 101300000 reads so far
2011-05-20 04:47:51,218 - INFO - Processed 101400000 reads so far
2011-05-20 04:48:02,074 - INFO - Processed 101500000 reads so far
2011-05-20 04:48:09,388 - INFO - Processed 101600000 reads so far
2011-05-20 04:48:20,829 - INFO - Processed 101700000 reads so far
2011-05-20 04:48:29,342 - INFO - Processed 101800000 reads so far
2011-05-20 04:48:39,583 - INFO - Processed 101900000 reads so far
2011-05-20 04:48:49,665 - INFO - Processed 102000000 reads so far
2011-05-20 04:49:01,419 - INFO - Processed 102100000 reads so far
2011-05-20 04:49:03,592 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:142990041-163010041
2011-05-20 04:49:10,751 - INFO - Processed 102200000 reads so far
2011-05-20 04:49:20,022 - INFO - Processed 102300000 reads so far
2011-05-20 04:49:28,152 - INFO - Processed 102400000 reads so far
2011-05-20 04:49:37,226 - INFO - Processed 102500000 reads so far
2011-05-20 04:49:47,417 - INFO - Processed 102600000 reads so far
2011-05-20 04:49:55,945 - INFO - Processed 102700000 reads so far
2011-05-20 04:50:08,624 - INFO - Processed 102800000 reads so far
2011-05-20 04:50:19,048 - INFO - Processed 102900000 reads so far
2011-05-20 04:50:21,112 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4_random:0-20010080
2011-05-20 04:50:21,852 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:2990004-23010004
2011-05-20 04:50:27,948 - INFO - Processed 103000000 reads so far
2011-05-20 04:50:37,752 - INFO - Processed 103100000 reads so far
2011-05-20 04:50:49,315 - INFO - Processed 103200000 reads so far
2011-05-20 04:50:59,030 - INFO - Processed 103300000 reads so far
2011-05-20 04:51:09,640 - INFO - Processed 103400000 reads so far
2011-05-20 04:51:19,147 - INFO - Processed 103500000 reads so far
2011-05-20 04:51:27,587 - INFO - Processed 103600000 reads so far
2011-05-20 04:51:37,648 - INFO - Processed 103700000 reads so far
2011-05-20 04:51:46,113 - INFO - Processed 103800000 reads so far
2011-05-20 04:51:57,446 - INFO - Processed 103900000 reads so far
2011-05-20 04:52:05,637 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:22990038-43010038
2011-05-20 04:52:09,824 - INFO - Processed 104000000 reads so far
2011-05-20 04:52:21,393 - INFO - Processed 104100000 reads so far
2011-05-20 04:52:33,745 - INFO - Processed 104200000 reads so far
2011-05-20 04:52:44,928 - INFO - Processed 104300000 reads so far
2011-05-20 04:52:57,294 - INFO - Processed 104400000 reads so far
2011-05-20 04:53:09,542 - INFO - Processed 104500000 reads so far
2011-05-20 04:53:20,774 - INFO - Processed 104600000 reads so far
2011-05-20 04:53:32,865 - INFO - Processed 104700000 reads so far
2011-05-20 04:53:43,963 - INFO - Processed 104800000 reads so far
2011-05-20 04:53:55,233 - INFO - Processed 104900000 reads so far
2011-05-20 04:54:06,416 - INFO - Processed 105000000 reads so far
2011-05-20 04:54:15,907 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:42990050-63010050
2011-05-20 04:54:18,666 - INFO - Processed 105100000 reads so far
2011-05-20 04:54:29,883 - INFO - Processed 105200000 reads so far
2011-05-20 04:54:41,079 - INFO - Processed 105300000 reads so far
2011-05-20 04:54:52,395 - INFO - Processed 105400000 reads so far
2011-05-20 04:55:03,613 - INFO - Processed 105500000 reads so far
2011-05-20 04:55:14,826 - INFO - Processed 105600000 reads so far
2011-05-20 04:55:26,510 - INFO - Processed 105700000 reads so far
2011-05-20 04:55:37,843 - INFO - Processed 105800000 reads so far
2011-05-20 04:55:49,178 - INFO - Processed 105900000 reads so far
2011-05-20 04:56:01,300 - INFO - Processed 106000000 reads so far
2011-05-20 04:56:12,186 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:62990087-83010087
2011-05-20 04:56:12,994 - INFO - Processed 106100000 reads so far
2011-05-20 04:56:24,145 - INFO - Processed 106200000 reads so far
2011-05-20 04:56:35,605 - INFO - Processed 106300000 reads so far
2011-05-20 04:56:46,979 - INFO - Processed 106400000 reads so far
2011-05-20 04:56:58,072 - INFO - Processed 106500000 reads so far
2011-05-20 04:57:10,829 - INFO - Processed 106600000 reads so far
2011-05-20 04:57:22,250 - INFO - Processed 106700000 reads so far
2011-05-20 04:57:33,873 - INFO - Processed 106800000 reads so far
2011-05-20 04:57:45,390 - INFO - Processed 106900000 reads so far
2011-05-20 04:57:57,723 - INFO - Processed 107000000 reads so far
2011-05-20 04:58:10,928 - INFO - Processed 107100000 reads so far
2011-05-20 04:58:14,311 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:82990090-103010090
2011-05-20 04:58:23,767 - INFO - Processed 107200000 reads so far
2011-05-20 04:58:36,134 - INFO - Processed 107300000 reads so far
2011-05-20 04:58:47,672 - INFO - Processed 107400000 reads so far
2011-05-20 04:58:59,116 - INFO - Processed 107500000 reads so far
2011-05-20 04:59:10,971 - INFO - Processed 107600000 reads so far
2011-05-20 04:59:22,355 - INFO - Processed 107700000 reads so far
2011-05-20 04:59:34,278 - INFO - Processed 107800000 reads so far
2011-05-20 04:59:45,739 - INFO - Processed 107900000 reads so far
2011-05-20 04:59:57,199 - INFO - Processed 108000000 reads so far
2011-05-20 05:00:08,721 - INFO - Processed 108100000 reads so far
2011-05-20 05:00:11,569 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:102990111-123010111
2011-05-20 05:00:20,152 - INFO - Processed 108200000 reads so far
2011-05-20 05:00:31,466 - INFO - Processed 108300000 reads so far
2011-05-20 05:00:43,026 - INFO - Processed 108400000 reads so far
2011-05-20 05:00:54,439 - INFO - Processed 108500000 reads so far
2011-05-20 05:01:05,967 - INFO - Processed 108600000 reads so far
2011-05-20 05:01:17,098 - INFO - Processed 108700000 reads so far
2011-05-20 05:01:32,353 - INFO - Processed 108800000 reads so far
2011-05-20 05:01:44,470 - INFO - Processed 108900000 reads so far
2011-05-20 05:01:56,860 - INFO - Processed 109000000 reads so far
2011-05-20 05:02:09,314 - INFO - Processed 109100000 reads so far
2011-05-20 05:02:21,639 - INFO - Processed 109200000 reads so far
2011-05-20 05:02:29,330 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:122990137-143010137
2011-05-20 05:02:34,376 - INFO - Processed 109300000 reads so far
2011-05-20 05:02:46,124 - INFO - Processed 109400000 reads so far
2011-05-20 05:02:57,350 - INFO - Processed 109500000 reads so far
2011-05-20 05:03:09,645 - INFO - Processed 109600000 reads so far
2011-05-20 05:03:20,937 - INFO - Processed 109700000 reads so far
2011-05-20 05:03:29,841 - INFO - Processed 109800000 reads so far
2011-05-20 05:03:41,136 - INFO - Processed 109900000 reads so far
2011-05-20 05:03:52,539 - INFO - Processed 110000000 reads so far
2011-05-20 05:04:03,869 - INFO - Processed 110100000 reads so far
2011-05-20 05:04:15,259 - INFO - Processed 110200000 reads so far
2011-05-20 05:04:26,440 - INFO - Processed 110300000 reads so far
2011-05-20 05:04:36,997 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:142990139-163010139
2011-05-20 05:04:38,706 - INFO - Processed 110400000 reads so far
2011-05-20 05:04:52,019 - INFO - Processed 110500000 reads so far
2011-05-20 05:05:03,458 - INFO - Processed 110600000 reads so far
2011-05-20 05:05:14,549 - INFO - Processed 110700000 reads so far
2011-05-20 05:05:25,794 - INFO - Processed 110800000 reads so far
2011-05-20 05:05:37,007 - INFO - Processed 110900000 reads so far
2011-05-20 05:05:38,912 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5_random:0-20010088
2011-05-20 05:05:39,409 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:2990029-23010029
2011-05-20 05:05:48,153 - INFO - Processed 111000000 reads so far
2011-05-20 05:05:59,278 - INFO - Processed 111100000 reads so far
2011-05-20 05:06:10,917 - INFO - Processed 111200000 reads so far
2011-05-20 05:06:22,047 - INFO - Processed 111300000 reads so far
2011-05-20 05:06:34,665 - INFO - Processed 111400000 reads so far
2011-05-20 05:06:45,872 - INFO - Processed 111500000 reads so far
2011-05-20 05:06:57,457 - INFO - Processed 111600000 reads so far
2011-05-20 05:07:08,733 - INFO - Processed 111700000 reads so far
2011-05-20 05:07:19,844 - INFO - Processed 111800000 reads so far
2011-05-20 05:07:31,426 - INFO - Processed 111900000 reads so far
2011-05-20 05:07:36,177 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:22990049-43010049
2011-05-20 05:07:42,787 - INFO - Processed 112000000 reads so far
2011-05-20 05:07:53,991 - INFO - Processed 112100000 reads so far
2011-05-20 05:08:05,751 - INFO - Processed 112200000 reads so far
2011-05-20 05:08:17,303 - INFO - Processed 112300000 reads so far
2011-05-20 05:08:28,604 - INFO - Processed 112400000 reads so far
2011-05-20 05:08:41,115 - INFO - Processed 112500000 reads so far
2011-05-20 05:08:54,546 - INFO - Processed 112600000 reads so far
2011-05-20 05:09:05,891 - INFO - Processed 112700000 reads so far
2011-05-20 05:09:18,609 - INFO - Processed 112800000 reads so far
2011-05-20 05:09:30,540 - INFO - Processed 112900000 reads so far
2011-05-20 05:09:42,141 - INFO - Processed 113000000 reads so far
2011-05-20 05:09:43,706 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:42990059-63010059
2011-05-20 05:09:53,656 - INFO - Processed 113100000 reads so far
2011-05-20 05:10:08,815 - INFO - Processed 113200000 reads so far
2011-05-20 05:10:15,950 - INFO - Processed 113300000 reads so far
2011-05-20 05:10:25,559 - INFO - Processed 113400000 reads so far
2011-05-20 05:10:36,190 - INFO - Processed 113500000 reads so far
2011-05-20 05:10:46,512 - INFO - Processed 113600000 reads so far
2011-05-20 05:11:03,162 - INFO - Processed 113700000 reads so far
2011-05-20 05:11:14,175 - INFO - Processed 113800000 reads so far
2011-05-20 05:11:26,129 - INFO - Processed 113900000 reads so far
2011-05-20 05:11:36,277 - INFO - Processed 114000000 reads so far
2011-05-20 05:11:45,491 - INFO - Processed 114100000 reads so far
2011-05-20 05:11:53,932 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:62990073-83010073
2011-05-20 05:11:56,988 - INFO - Processed 114200000 reads so far
2011-05-20 05:12:05,608 - INFO - Processed 114300000 reads so far
2011-05-20 05:12:14,982 - INFO - Processed 114400000 reads so far
2011-05-20 05:12:23,550 - INFO - Processed 114500000 reads so far
2011-05-20 05:12:34,085 - INFO - Processed 114600000 reads so far
2011-05-20 05:12:43,158 - INFO - Processed 114700000 reads so far
2011-05-20 05:12:54,350 - INFO - Processed 114800000 reads so far
2011-05-20 05:13:02,057 - INFO - Processed 114900000 reads so far
2011-05-20 05:13:11,033 - INFO - Processed 115000000 reads so far
2011-05-20 05:13:20,745 - INFO - Processed 115100000 reads so far
2011-05-20 05:13:29,557 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:82990089-103010089
2011-05-20 05:13:32,134 - INFO - Processed 115200000 reads so far
2011-05-20 05:13:43,368 - INFO - Processed 115300000 reads so far
2011-05-20 05:13:54,632 - INFO - Processed 115400000 reads so far
2011-05-20 05:14:05,935 - INFO - Processed 115500000 reads so far
2011-05-20 05:14:17,184 - INFO - Processed 115600000 reads so far
2011-05-20 05:14:28,547 - INFO - Processed 115700000 reads so far
2011-05-20 05:14:39,755 - INFO - Processed 115800000 reads so far
2011-05-20 05:14:51,203 - INFO - Processed 115900000 reads so far
2011-05-20 05:15:02,414 - INFO - Processed 116000000 reads so far
2011-05-20 05:15:14,527 - INFO - Processed 116100000 reads so far
2011-05-20 05:15:25,757 - INFO - Processed 116200000 reads so far
2011-05-20 05:15:38,271 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:102990168-123010168
2011-05-20 05:15:38,442 - INFO - Processed 116300000 reads so far
2011-05-20 05:15:48,905 - INFO - Processed 116400000 reads so far
2011-05-20 05:15:58,658 - INFO - Processed 116500000 reads so far
2011-05-20 05:16:08,167 - INFO - Processed 116600000 reads so far
2011-05-20 05:16:17,965 - INFO - Processed 116700000 reads so far
2011-05-20 05:16:29,776 - INFO - Processed 116800000 reads so far
2011-05-20 05:16:41,334 - INFO - Processed 116900000 reads so far
2011-05-20 05:16:51,888 - INFO - Processed 117000000 reads so far
2011-05-20 05:17:02,540 - INFO - Processed 117100000 reads so far
2011-05-20 05:17:11,136 - INFO - Processed 117200000 reads so far
2011-05-20 05:17:19,065 - INFO - Processed 117300000 reads so far
2011-05-20 05:17:27,818 - INFO - Processed 117400000 reads so far
2011-05-20 05:17:37,264 - INFO - Processed 117500000 reads so far
2011-05-20 05:17:44,145 - INFO - Processed 117600000 reads so far
2011-05-20 05:17:54,556 - INFO - Processed 117700000 reads so far
2011-05-20 05:18:05,611 - INFO - Processed 117800000 reads so far
2011-05-20 05:18:15,861 - INFO - Processed 117900000 reads so far
2011-05-20 05:18:24,673 - INFO - Processed 118000000 reads so far
2011-05-20 05:18:34,348 - INFO - Processed 118100000 reads so far
2011-05-20 05:18:43,021 - INFO - Processed 118200000 reads so far
2011-05-20 05:18:53,751 - INFO - Processed 118300000 reads so far
2011-05-20 05:18:59,196 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:122990184-143010184
2011-05-20 05:19:01,402 - INFO - Processed 118400000 reads so far
2011-05-20 05:19:10,424 - INFO - Processed 118500000 reads so far
2011-05-20 05:19:21,254 - INFO - Processed 118600000 reads so far
2011-05-20 05:19:32,316 - INFO - Processed 118700000 reads so far
2011-05-20 05:19:42,096 - INFO - Processed 118800000 reads so far
2011-05-20 05:19:52,706 - INFO - Processed 118900000 reads so far
2011-05-20 05:20:03,943 - INFO - Processed 119000000 reads so far
2011-05-20 05:20:13,605 - INFO - Processed 119100000 reads so far
2011-05-20 05:20:21,760 - INFO - Processed 119200000 reads so far
2011-05-20 05:20:30,220 - INFO - Processed 119300000 reads so far
2011-05-20 05:20:37,794 - INFO - Processed 119400000 reads so far
2011-05-20 05:20:45,951 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:142990187-163010187
2011-05-20 05:20:48,060 - INFO - Processed 119500000 reads so far
2011-05-20 05:20:57,226 - INFO - Processed 119600000 reads so far
2011-05-20 05:21:05,631 - INFO - Processed 119700000 reads so far
2011-05-20 05:21:16,278 - INFO - Processed 119800000 reads so far
2011-05-20 05:21:20,491 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:2990029-23010029
2011-05-20 05:21:27,901 - INFO - Processed 119900000 reads so far
2011-05-20 05:21:36,721 - INFO - Processed 120000000 reads so far
2011-05-20 05:21:45,733 - INFO - Processed 120100000 reads so far
2011-05-20 05:21:56,397 - INFO - Processed 120200000 reads so far
2011-05-20 05:22:06,508 - INFO - Processed 120300000 reads so far
2011-05-20 05:22:17,720 - INFO - Processed 120400000 reads so far
2011-05-20 05:22:27,900 - INFO - Processed 120500000 reads so far
2011-05-20 05:22:37,001 - INFO - Processed 120600000 reads so far
2011-05-20 05:22:44,170 - INFO - Processed 120700000 reads so far
2011-05-20 05:22:50,792 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:22990057-43010057
2011-05-20 05:22:54,368 - INFO - Processed 120800000 reads so far
2011-05-20 05:23:02,962 - INFO - Processed 120900000 reads so far
2011-05-20 05:23:12,682 - INFO - Processed 121000000 reads so far
2011-05-20 05:23:25,593 - INFO - Processed 121100000 reads so far
2011-05-20 05:23:35,095 - INFO - Processed 121200000 reads so far
2011-05-20 05:23:47,525 - INFO - Processed 121300000 reads so far
2011-05-20 05:23:57,429 - INFO - Processed 121400000 reads so far
2011-05-20 05:24:07,072 - INFO - Processed 121500000 reads so far
2011-05-20 05:24:19,669 - INFO - Processed 121600000 reads so far
2011-05-20 05:24:21,232 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:46352055-66372055
2011-05-20 05:24:29,619 - INFO - Processed 121700000 reads so far
2011-05-20 05:24:39,556 - INFO - Processed 121800000 reads so far
2011-05-20 05:24:47,351 - INFO - Processed 121900000 reads so far
2011-05-20 05:24:55,538 - INFO - Processed 122000000 reads so far
2011-05-20 05:25:04,767 - INFO - Processed 122100000 reads so far
2011-05-20 05:25:13,473 - INFO - Processed 122200000 reads so far
2011-05-20 05:25:23,112 - INFO - Processed 122300000 reads so far
2011-05-20 05:25:34,404 - INFO - Processed 122400000 reads so far
2011-05-20 05:25:44,002 - INFO - Processed 122500000 reads so far
2011-05-20 05:25:54,077 - INFO - Processed 122600000 reads so far
2011-05-20 05:26:03,280 - INFO - Processed 122700000 reads so far
2011-05-20 05:26:03,349 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:66352101-86372101
2011-05-20 05:26:13,458 - INFO - Processed 122800000 reads so far
2011-05-20 05:26:21,714 - INFO - Processed 122900000 reads so far
2011-05-20 05:26:28,523 - INFO - Processed 123000000 reads so far
2011-05-20 05:26:38,957 - INFO - Processed 123100000 reads so far
2011-05-20 05:26:46,967 - INFO - Processed 123200000 reads so far
2011-05-20 05:26:58,032 - INFO - Processed 123300000 reads so far
2011-05-20 05:27:10,191 - INFO - Processed 123400000 reads so far
2011-05-20 05:27:21,331 - INFO - Processed 123500000 reads so far
2011-05-20 05:27:32,536 - INFO - Processed 123600000 reads so far
2011-05-20 05:27:43,792 - INFO - Processed 123700000 reads so far
2011-05-20 05:27:56,529 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:86352111-106372111
2011-05-20 05:27:57,171 - INFO - Processed 123800000 reads so far
2011-05-20 05:28:09,443 - INFO - Processed 123900000 reads so far
2011-05-20 05:28:21,200 - INFO - Processed 124000000 reads so far
2011-05-20 05:28:32,392 - INFO - Processed 124100000 reads so far
2011-05-20 05:28:43,635 - INFO - Processed 124200000 reads so far
2011-05-20 05:28:54,902 - INFO - Processed 124300000 reads so far
2011-05-20 05:29:06,169 - INFO - Processed 124400000 reads so far
2011-05-20 05:29:18,862 - INFO - Processed 124500000 reads so far
2011-05-20 05:29:30,461 - INFO - Processed 124600000 reads so far
2011-05-20 05:29:41,616 - INFO - Processed 124700000 reads so far
2011-05-20 05:29:54,060 - INFO - Processed 124800000 reads so far
2011-05-20 05:30:01,076 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:106352124-126372124
2011-05-20 05:30:05,391 - INFO - Processed 124900000 reads so far
2011-05-20 05:30:16,787 - INFO - Processed 125000000 reads so far
2011-05-20 05:30:29,682 - INFO - Processed 125100000 reads so far
2011-05-20 05:30:41,196 - INFO - Processed 125200000 reads so far
2011-05-20 05:30:52,988 - INFO - Processed 125300000 reads so far
2011-05-20 05:31:04,261 - INFO - Processed 125400000 reads so far
2011-05-20 05:31:16,051 - INFO - Processed 125500000 reads so far
2011-05-20 05:31:27,322 - INFO - Processed 125600000 reads so far
2011-05-20 05:31:38,705 - INFO - Processed 125700000 reads so far
2011-05-20 05:31:51,115 - INFO - Processed 125800000 reads so far
2011-05-20 05:32:03,013 - INFO - Processed 125900000 reads so far
2011-05-20 05:32:08,030 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:126352125-146372125
2011-05-20 05:32:17,207 - INFO - Processed 126000000 reads so far
2011-05-20 05:32:29,550 - INFO - Processed 126100000 reads so far
2011-05-20 05:32:41,922 - INFO - Processed 126200000 reads so far
2011-05-20 05:32:50,747 - INFO - Processed 126300000 reads so far
2011-05-20 05:33:02,603 - INFO - Processed 126400000 reads so far
2011-05-20 05:33:13,861 - INFO - Processed 126500000 reads so far
2011-05-20 05:33:23,855 - INFO - Processed 126600000 reads so far
2011-05-20 05:33:34,255 - INFO - Processed 126700000 reads so far
2011-05-20 05:33:44,224 - INFO - Processed 126800000 reads so far
2011-05-20 05:33:54,671 - INFO - Processed 126900000 reads so far
2011-05-20 05:34:05,213 - INFO - Processed 127000000 reads so far
2011-05-20 05:34:13,063 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:146352155-166372155
2011-05-20 05:34:15,630 - INFO - Processed 127100000 reads so far
2011-05-20 05:34:26,200 - INFO - Processed 127200000 reads so far
2011-05-20 05:34:37,349 - INFO - Processed 127300000 reads so far
2011-05-20 05:34:46,488 - INFO - Processed 127400000 reads so far
2011-05-20 05:34:52,081 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7_random:0-20010059
2011-05-20 05:34:53,437 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:2990075-23010075
2011-05-20 05:34:56,959 - INFO - Processed 127500000 reads so far
2011-05-20 05:35:06,772 - INFO - Processed 127600000 reads so far
2011-05-20 05:35:16,794 - INFO - Processed 127700000 reads so far
2011-05-20 05:35:26,603 - INFO - Processed 127800000 reads so far
2011-05-20 05:35:37,618 - INFO - Processed 127900000 reads so far
2011-05-20 05:35:47,326 - INFO - Processed 128000000 reads so far
2011-05-20 05:35:58,275 - INFO - Processed 128100000 reads so far
2011-05-20 05:36:08,493 - INFO - Processed 128200000 reads so far
2011-05-20 05:36:18,686 - INFO - Processed 128300000 reads so far
2011-05-20 05:36:28,525 - INFO - Processed 128400000 reads so far
2011-05-20 05:36:37,355 - INFO - Processed 128500000 reads so far
2011-05-20 05:36:49,354 - INFO - Processed 128600000 reads so far
2011-05-20 05:36:50,760 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:22990121-43010121
2011-05-20 05:36:58,136 - INFO - Processed 128700000 reads so far
2011-05-20 05:37:08,731 - INFO - Processed 128800000 reads so far
2011-05-20 05:37:20,259 - INFO - Processed 128900000 reads so far
2011-05-20 05:37:30,925 - INFO - Processed 129000000 reads so far
2011-05-20 05:37:41,278 - INFO - Processed 129100000 reads so far
2011-05-20 05:37:51,450 - INFO - Processed 129200000 reads so far
2011-05-20 05:38:00,660 - INFO - Processed 129300000 reads so far
2011-05-20 05:38:09,048 - INFO - Processed 129400000 reads so far
2011-05-20 05:38:19,232 - INFO - Processed 129500000 reads so far
2011-05-20 05:38:29,350 - INFO - Processed 129600000 reads so far
2011-05-20 05:38:36,199 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:42990142-63010142
2011-05-20 05:38:39,976 - INFO - Processed 129700000 reads so far
2011-05-20 05:38:48,091 - INFO - Processed 129800000 reads so far
2011-05-20 05:38:57,938 - INFO - Processed 129900000 reads so far
2011-05-20 05:39:07,959 - INFO - Processed 130000000 reads so far
2011-05-20 05:39:16,461 - INFO - Processed 130100000 reads so far
2011-05-20 05:39:25,439 - INFO - Processed 130200000 reads so far
2011-05-20 05:39:36,318 - INFO - Processed 130300000 reads so far
2011-05-20 05:39:47,738 - INFO - Processed 130400000 reads so far
2011-05-20 05:40:00,080 - INFO - Processed 130500000 reads so far
2011-05-20 05:40:09,112 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:62990143-83010143
2011-05-20 05:40:11,313 - INFO - Processed 130600000 reads so far
2011-05-20 05:40:21,511 - INFO - Processed 130700000 reads so far
2011-05-20 05:40:31,848 - INFO - Processed 130800000 reads so far
2011-05-20 05:40:44,171 - INFO - Processed 130900000 reads so far
2011-05-20 05:40:53,754 - INFO - Processed 131000000 reads so far
2011-05-20 05:41:02,602 - INFO - Processed 131100000 reads so far
2011-05-20 05:41:13,439 - INFO - Processed 131200000 reads so far
2011-05-20 05:41:23,189 - INFO - Processed 131300000 reads so far
2011-05-20 05:41:34,230 - INFO - Processed 131400000 reads so far
2011-05-20 05:41:44,054 - INFO - Processed 131500000 reads so far
2011-05-20 05:41:54,996 - INFO - Processed 131600000 reads so far
2011-05-20 05:42:00,602 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:82990151-103010151
2011-05-20 05:42:06,546 - INFO - Processed 131700000 reads so far
2011-05-20 05:42:18,699 - INFO - Processed 131800000 reads so far
2011-05-20 05:42:33,438 - INFO - Processed 131900000 reads so far
2011-05-20 05:42:43,950 - INFO - Processed 132000000 reads so far
2011-05-20 05:42:53,123 - INFO - Processed 132100000 reads so far
2011-05-20 05:43:04,702 - INFO - Processed 132200000 reads so far
2011-05-20 05:43:14,211 - INFO - Processed 132300000 reads so far
2011-05-20 05:43:23,355 - INFO - Processed 132400000 reads so far
2011-05-20 05:43:32,173 - INFO - Processed 132500000 reads so far
2011-05-20 05:43:42,141 - INFO - Processed 132600000 reads so far
2011-05-20 05:43:52,801 - INFO - Processed 132700000 reads so far
2011-05-20 05:43:56,046 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:102990202-123010202
2011-05-20 05:44:01,934 - INFO - Processed 132800000 reads so far
2011-05-20 05:44:10,618 - INFO - Processed 132900000 reads so far
2011-05-20 05:44:20,132 - INFO - Processed 133000000 reads so far
2011-05-20 05:44:29,618 - INFO - Processed 133100000 reads so far
2011-05-20 05:44:37,851 - INFO - Processed 133200000 reads so far
2011-05-20 05:44:45,653 - INFO - Processed 133300000 reads so far
2011-05-20 05:44:55,263 - INFO - Processed 133400000 reads so far
2011-05-20 05:45:05,848 - INFO - Processed 133500000 reads so far
2011-05-20 05:45:16,346 - INFO - Processed 133600000 reads so far
2011-05-20 05:45:26,886 - INFO - Processed 133700000 reads so far
2011-05-20 05:45:40,139 - INFO - Processed 133800000 reads so far
2011-05-20 05:45:43,809 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:122990208-143010208
2011-05-20 05:45:51,322 - INFO - Processed 133900000 reads so far
2011-05-20 05:46:02,977 - INFO - Processed 134000000 reads so far
2011-05-20 05:46:16,372 - INFO - Processed 134100000 reads so far
2011-05-20 05:46:30,108 - INFO - Processed 134200000 reads so far
2011-05-20 05:46:41,393 - INFO - Processed 134300000 reads so far
2011-05-20 05:46:47,565 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8_random:0-20010056
2011-05-20 05:46:52,312 - INFO - Processed 134400000 reads so far
2011-05-20 05:46:59,056 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:2989953-23009953
2011-05-20 05:47:01,929 - INFO - Processed 134500000 reads so far
2011-05-20 05:47:11,067 - INFO - Processed 134600000 reads so far
2011-05-20 05:47:20,181 - INFO - Processed 134700000 reads so far
2011-05-20 05:47:29,272 - INFO - Processed 134800000 reads so far
2011-05-20 05:47:36,539 - INFO - Processed 134900000 reads so far
2011-05-20 05:47:43,691 - INFO - Processed 135000000 reads so far
2011-05-20 05:47:52,420 - INFO - Processed 135100000 reads so far
2011-05-20 05:48:05,377 - INFO - Processed 135200000 reads so far
2011-05-20 05:48:17,076 - INFO - Processed 135300000 reads so far
2011-05-20 05:48:26,414 - INFO - Processed 135400000 reads so far
2011-05-20 05:48:35,682 - INFO - Processed 135500000 reads so far
2011-05-20 05:48:44,580 - INFO - Processed 135600000 reads so far
2011-05-20 05:48:50,165 - INFO - Processed 135700000 reads so far
2011-05-20 05:48:59,400 - INFO - Processed 135800000 reads so far
2011-05-20 05:49:11,404 - INFO - Processed 135900000 reads so far
2011-05-20 05:49:21,016 - INFO - Processed 136000000 reads so far
2011-05-20 05:49:32,294 - INFO - Processed 136100000 reads so far
2011-05-20 05:49:43,834 - INFO - Processed 136200000 reads so far
2011-05-20 05:49:53,754 - INFO - Processed 136300000 reads so far
2011-05-20 05:50:02,990 - INFO - Processed 136400000 reads so far
2011-05-20 05:50:12,090 - INFO - Processed 136500000 reads so far
2011-05-20 05:50:23,613 - INFO - Processed 136600000 reads so far
2011-05-20 05:50:32,729 - INFO - Processed 136700000 reads so far
2011-05-20 05:50:42,288 - INFO - Processed 136800000 reads so far
2011-05-20 05:50:51,456 - INFO - Processed 136900000 reads so far
2011-05-20 05:51:00,568 - INFO - Processed 137000000 reads so far
2011-05-20 05:51:09,549 - INFO - Processed 137100000 reads so far
2011-05-20 05:51:18,919 - INFO - Processed 137200000 reads so far
2011-05-20 05:51:30,089 - INFO - Processed 137300000 reads so far
2011-05-20 05:51:40,797 - INFO - Processed 137400000 reads so far
2011-05-20 05:51:47,973 - INFO - Processed 137500000 reads so far
2011-05-20 05:51:55,512 - INFO - Processed 137600000 reads so far
2011-05-20 05:52:06,413 - INFO - Processed 137700000 reads so far
2011-05-20 05:52:18,224 - INFO - Processed 137800000 reads so far
2011-05-20 05:52:27,962 - INFO - Processed 137900000 reads so far
2011-05-20 05:52:39,429 - INFO - Processed 138000000 reads so far
2011-05-20 05:52:49,170 - INFO - Processed 138100000 reads so far
2011-05-20 05:52:58,890 - INFO - Processed 138200000 reads so far
2011-05-20 05:53:06,955 - INFO - Processed 138300000 reads so far
2011-05-20 05:53:15,089 - INFO - Processed 138400000 reads so far
2011-05-20 05:53:22,689 - INFO - Processed 138500000 reads so far
2011-05-20 05:53:29,126 - INFO - Processed 138600000 reads so far
2011-05-20 05:53:36,226 - INFO - Processed 138700000 reads so far
2011-05-20 05:53:47,328 - INFO - Processed 138800000 reads so far
2011-05-20 05:53:53,742 - INFO - Processed 138900000 reads so far
2011-05-20 05:54:02,388 - INFO - Processed 139000000 reads so far
2011-05-20 05:54:12,350 - INFO - Processed 139100000 reads so far
2011-05-20 05:54:20,474 - INFO - Processed 139200000 reads so far
2011-05-20 05:54:28,031 - INFO - Processed 139300000 reads so far
2011-05-20 05:54:35,217 - INFO - Processed 139400000 reads so far
2011-05-20 05:54:43,963 - INFO - Processed 139500000 reads so far
2011-05-20 05:54:52,794 - INFO - Processed 139600000 reads so far
2011-05-20 05:55:00,809 - INFO - Processed 139700000 reads so far
2011-05-20 05:55:08,999 - INFO - Processed 139800000 reads so far
2011-05-20 05:55:15,873 - INFO - Processed 139900000 reads so far
2011-05-20 05:55:22,459 - INFO - Processed 140000000 reads so far
2011-05-20 05:55:29,301 - INFO - Processed 140100000 reads so far
2011-05-20 05:55:36,077 - INFO - Processed 140200000 reads so far
2011-05-20 05:55:42,909 - INFO - Processed 140300000 reads so far
2011-05-20 05:55:49,860 - INFO - Processed 140400000 reads so far
2011-05-20 05:55:56,437 - INFO - Processed 140500000 reads so far
2011-05-20 05:56:03,423 - INFO - Processed 140600000 reads so far
2011-05-20 05:56:11,085 - INFO - Processed 140700000 reads so far
2011-05-20 05:56:19,577 - INFO - Processed 140800000 reads so far
2011-05-20 05:56:26,778 - INFO - Processed 140900000 reads so far
2011-05-20 05:56:35,467 - INFO - Processed 141000000 reads so far
2011-05-20 05:56:44,820 - INFO - Processed 141100000 reads so far
2011-05-20 05:56:52,635 - INFO - Processed 141200000 reads so far
2011-05-20 05:56:59,994 - INFO - Processed 141300000 reads so far
2011-05-20 05:57:07,952 - INFO - Processed 141400000 reads so far
2011-05-20 05:57:16,450 - INFO - Processed 141500000 reads so far
2011-05-20 05:57:24,387 - INFO - Processed 141600000 reads so far
2011-05-20 05:57:34,385 - INFO - Processed 141700000 reads so far
2011-05-20 05:57:44,099 - INFO - Processed 141800000 reads so far
2011-05-20 05:57:52,222 - INFO - Processed 141900000 reads so far
2011-05-20 05:58:00,885 - INFO - Processed 142000000 reads so far
2011-05-20 05:58:10,220 - INFO - Processed 142100000 reads so far
2011-05-20 05:58:19,049 - INFO - Processed 142200000 reads so far
2011-05-20 05:58:29,234 - INFO - Processed 142300000 reads so far
2011-05-20 05:58:38,986 - INFO - Processed 142400000 reads so far
2011-05-20 05:58:49,039 - INFO - Processed 142500000 reads so far
2011-05-20 05:58:58,381 - INFO - Processed 142600000 reads so far
2011-05-20 05:59:01,198 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:22989967-43009967
2011-05-20 05:59:08,361 - INFO - Processed 142700000 reads so far
2011-05-20 05:59:16,172 - INFO - Processed 142800000 reads so far
2011-05-20 05:59:26,623 - INFO - Processed 142900000 reads so far
2011-05-20 05:59:35,513 - INFO - Processed 143000000 reads so far
2011-05-20 05:59:45,397 - INFO - Processed 143100000 reads so far
2011-05-20 05:59:53,909 - INFO - Processed 143200000 reads so far
2011-05-20 06:00:04,215 - INFO - Processed 143300000 reads so far
2011-05-20 06:00:11,315 - INFO - Processed 143400000 reads so far
2011-05-20 06:00:22,931 - INFO - Processed 143500000 reads so far
2011-05-20 06:00:35,465 - INFO - Processed 143600000 reads so far
2011-05-20 06:00:44,521 - INFO - Processed 143700000 reads so far
2011-05-20 06:00:53,259 - INFO - Processed 143800000 reads so far
2011-05-20 06:01:00,618 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:42989983-63009983
2011-05-20 06:01:03,387 - INFO - Processed 143900000 reads so far
2011-05-20 06:01:13,156 - INFO - Processed 144000000 reads so far
2011-05-20 06:01:25,405 - INFO - Processed 144100000 reads so far
2011-05-20 06:01:42,174 - INFO - Processed 144200000 reads so far
2011-05-20 06:01:51,907 - INFO - Processed 144300000 reads so far
2011-05-20 06:02:00,991 - INFO - Processed 144400000 reads so far
2011-05-20 06:02:10,405 - INFO - Processed 144500000 reads so far
2011-05-20 06:02:18,863 - INFO - Processed 144600000 reads so far
2011-05-20 06:02:27,342 - INFO - Processed 144700000 reads so far
2011-05-20 06:02:34,426 - INFO - Processed 144800000 reads so far
2011-05-20 06:02:42,902 - INFO - Processed 144900000 reads so far
2011-05-20 06:02:53,337 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:62989984-83009984
2011-05-20 06:02:53,599 - INFO - Processed 145000000 reads so far
2011-05-20 06:03:04,973 - INFO - Processed 145100000 reads so far
2011-05-20 06:03:16,140 - INFO - Processed 145200000 reads so far
2011-05-20 06:03:27,573 - INFO - Processed 145300000 reads so far
2011-05-20 06:03:37,623 - INFO - Processed 145400000 reads so far
2011-05-20 06:03:47,388 - INFO - Processed 145500000 reads so far
2011-05-20 06:03:57,076 - INFO - Processed 145600000 reads so far
2011-05-20 06:04:06,765 - INFO - Processed 145700000 reads so far
2011-05-20 06:04:14,966 - INFO - Processed 145800000 reads so far
2011-05-20 06:04:24,098 - INFO - Processed 145900000 reads so far
2011-05-20 06:04:32,559 - INFO - Processed 146000000 reads so far
2011-05-20 06:04:39,283 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:82989997-103009997
2011-05-20 06:04:43,541 - INFO - Processed 146100000 reads so far
2011-05-20 06:04:53,262 - INFO - Processed 146200000 reads so far
2011-05-20 06:05:02,114 - INFO - Processed 146300000 reads so far
2011-05-20 06:05:10,377 - INFO - Processed 146400000 reads so far
2011-05-20 06:05:18,806 - INFO - Processed 146500000 reads so far
2011-05-20 06:05:27,795 - INFO - Processed 146600000 reads so far
2011-05-20 06:05:36,630 - INFO - Processed 146700000 reads so far
2011-05-20 06:05:45,695 - INFO - Processed 146800000 reads so far
2011-05-20 06:05:55,573 - INFO - Processed 146900000 reads so far
2011-05-20 06:06:05,243 - INFO - Processed 147000000 reads so far
2011-05-20 06:06:14,185 - INFO - Processed 147100000 reads so far
2011-05-20 06:06:16,231 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:102990007-123010007
2011-05-20 06:06:22,951 - INFO - Processed 147200000 reads so far
2011-05-20 06:06:31,817 - INFO - Processed 147300000 reads so far
2011-05-20 06:06:41,912 - INFO - Processed 147400000 reads so far
2011-05-20 06:06:50,214 - INFO - Processed 147500000 reads so far
2011-05-20 06:06:59,928 - INFO - Processed 147600000 reads so far
2011-05-20 06:07:08,686 - INFO - Processed 147700000 reads so far
2011-05-20 06:07:17,004 - INFO - Processed 147800000 reads so far
2011-05-20 06:07:26,073 - INFO - Processed 147900000 reads so far
2011-05-20 06:07:35,898 - INFO - Processed 148000000 reads so far
2011-05-20 06:07:44,297 - INFO - Processed 148100000 reads so far
2011-05-20 06:07:52,565 - INFO - Processed 148200000 reads so far
2011-05-20 06:07:57,722 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:122990049-143010049
2011-05-20 06:08:01,545 - INFO - Processed 148300000 reads so far
2011-05-20 06:08:02,624 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9_random:0-20010005
2011-05-20 06:08:05,243 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrM:0-20010000
2011-05-20 06:08:08,271 - INFO - Processed 148400000 reads so far
2011-05-20 06:08:09,998 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrUn_random:0-20010002
2011-05-20 06:08:16,056 - INFO - Processed 148500000 reads so far
2011-05-20 06:08:23,862 - INFO - Processed 148600000 reads so far
2011-05-20 06:08:31,548 - INFO - Processed 148700000 reads so far
2011-05-20 06:08:39,212 - INFO - Processed 148800000 reads so far
2011-05-20 06:08:44,475 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:2990002-23010002
2011-05-20 06:08:48,645 - INFO - Processed 148900000 reads so far
2011-05-20 06:09:00,841 - INFO - Processed 149000000 reads so far
2011-05-20 06:09:11,810 - INFO - Processed 149100000 reads so far
2011-05-20 06:09:20,165 - INFO - Processed 149200000 reads so far
2011-05-20 06:09:30,916 - INFO - Processed 149300000 reads so far
2011-05-20 06:09:41,425 - INFO - Processed 149400000 reads so far
2011-05-20 06:09:51,828 - INFO - Processed 149500000 reads so far
2011-05-20 06:09:59,572 - INFO - Processed 149600000 reads so far
2011-05-20 06:10:08,024 - INFO - Processed 149700000 reads so far
2011-05-20 06:10:16,858 - INFO - Processed 149800000 reads so far
2011-05-20 06:10:26,270 - INFO - Processed 149900000 reads so far
2011-05-20 06:10:43,009 - INFO - Processed 150000000 reads so far
2011-05-20 06:10:46,787 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:22990013-43010013
2011-05-20 06:10:56,785 - INFO - Processed 150100000 reads so far
2011-05-20 06:11:08,256 - INFO - Processed 150200000 reads so far
2011-05-20 06:11:16,780 - INFO - Processed 150300000 reads so far
2011-05-20 06:11:29,201 - INFO - Processed 150400000 reads so far
2011-05-20 06:11:38,370 - INFO - Processed 150500000 reads so far
2011-05-20 06:11:48,327 - INFO - Processed 150600000 reads so far
2011-05-20 06:11:59,209 - INFO - Processed 150700000 reads so far
2011-05-20 06:12:10,971 - INFO - Processed 150800000 reads so far
2011-05-20 06:12:19,735 - INFO - Processed 150900000 reads so far
2011-05-20 06:12:36,416 - INFO - Processed 151000000 reads so far
2011-05-20 06:12:47,121 - INFO - Processed 151100000 reads so far
2011-05-20 06:12:59,332 - INFO - Processed 151200000 reads so far
2011-05-20 06:13:02,113 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:42990017-63010017
2011-05-20 06:13:09,259 - INFO - Processed 151300000 reads so far
2011-05-20 06:13:26,146 - INFO - Processed 151400000 reads so far
2011-05-20 06:13:34,583 - INFO - Processed 151500000 reads so far
2011-05-20 06:13:44,728 - INFO - Processed 151600000 reads so far
2011-05-20 06:13:51,975 - INFO - Processed 151700000 reads so far
2011-05-20 06:14:01,382 - INFO - Processed 151800000 reads so far
2011-05-20 06:14:08,943 - INFO - Processed 151900000 reads so far
2011-05-20 06:14:17,628 - INFO - Processed 152000000 reads so far
2011-05-20 06:14:25,366 - INFO - Processed 152100000 reads so far
2011-05-20 06:14:33,841 - INFO - Processed 152200000 reads so far
2011-05-20 06:14:41,410 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:62990045-83010045
2011-05-20 06:14:44,052 - INFO - Processed 152300000 reads so far
2011-05-20 06:14:52,362 - INFO - Processed 152400000 reads so far
2011-05-20 06:15:00,149 - INFO - Processed 152500000 reads so far
2011-05-20 06:15:11,210 - INFO - Processed 152600000 reads so far
2011-05-20 06:15:19,225 - INFO - Processed 152700000 reads so far
2011-05-20 06:15:27,712 - INFO - Processed 152800000 reads so far
2011-05-20 06:15:36,440 - INFO - Processed 152900000 reads so far
2011-05-20 06:15:46,200 - INFO - Processed 153000000 reads so far
2011-05-20 06:15:53,196 - INFO - Processed 153100000 reads so far
2011-05-20 06:16:03,155 - INFO - Processed 153200000 reads so far
2011-05-20 06:16:12,658 - INFO - Processed 153300000 reads so far
2011-05-20 06:16:14,933 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:82990098-103010098
2011-05-20 06:16:23,612 - INFO - Processed 153400000 reads so far
2011-05-20 06:16:33,167 - INFO - Processed 153500000 reads so far
2011-05-20 06:16:42,167 - INFO - Processed 153600000 reads so far
2011-05-20 06:16:51,388 - INFO - Processed 153700000 reads so far
2011-05-20 06:16:59,665 - INFO - Processed 153800000 reads so far
2011-05-20 06:17:07,884 - INFO - Processed 153900000 reads so far
2011-05-20 06:17:15,040 - INFO - Processed 154000000 reads so far
2011-05-20 06:17:22,444 - INFO - Processed 154100000 reads so far
2011-05-20 06:17:34,516 - INFO - Processed 154200000 reads so far
2011-05-20 06:17:41,745 - INFO - Processed 154300000 reads so far
2011-05-20 06:17:50,440 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:102990106-123010106
2011-05-20 06:17:54,317 - INFO - Processed 154400000 reads so far
2011-05-20 06:18:05,021 - INFO - Processed 154500000 reads so far
2011-05-20 06:18:14,683 - INFO - Processed 154600000 reads so far
2011-05-20 06:18:23,635 - INFO - Processed 154700000 reads so far
2011-05-20 06:18:32,492 - INFO - Processed 154800000 reads so far
2011-05-20 06:18:40,235 - INFO - Processed 154900000 reads so far
2011-05-20 06:18:49,002 - INFO - Processed 155000000 reads so far
2011-05-20 06:18:58,716 - INFO - Processed 155100000 reads so far
2011-05-20 06:19:06,741 - INFO - Processed 155200000 reads so far
2011-05-20 06:19:16,360 - INFO - Processed 155300000 reads so far
2011-05-20 06:19:18,934 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:122990114-143010114
2011-05-20 06:19:24,052 - INFO - Processed 155400000 reads so far
2011-05-20 06:19:33,650 - INFO - Processed 155500000 reads so far
2011-05-20 06:19:43,703 - INFO - Processed 155600000 reads so far
2011-05-20 06:19:51,832 - INFO - Processed 155700000 reads so far
2011-05-20 06:20:01,090 - INFO - Processed 155800000 reads so far
2011-05-20 06:20:12,539 - INFO - Processed 155900000 reads so far
2011-05-20 06:20:22,616 - INFO - Processed 156000000 reads so far
2011-05-20 06:20:33,706 - INFO - Processed 156100000 reads so far
2011-05-20 06:20:44,125 - INFO - Processed 156200000 reads so far
2011-05-20 06:20:51,591 - INFO - Processed 156300000 reads so far
2011-05-20 06:21:00,547 - INFO - Processed 156400000 reads so far
2011-05-20 06:21:02,239 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:142990117-163010117
2011-05-20 06:21:11,986 - INFO - Processed 156500000 reads so far
2011-05-20 06:21:21,099 - INFO - Processed 156600000 reads so far
2011-05-20 06:21:30,041 - INFO - Processed 156700000 reads so far
2011-05-20 06:21:38,399 - INFO - Processed 156800000 reads so far
2011-05-20 06:21:48,552 - INFO - Processed 156900000 reads so far
2011-05-20 06:22:00,130 - INFO - Processed 157000000 reads so far
2011-05-20 06:22:11,417 - INFO - Processed 157100000 reads so far
2011-05-20 06:22:20,819 - INFO - Processed 157200000 reads so far
2011-05-20 06:22:29,295 - INFO - Processed 157300000 reads so far
2011-05-20 06:22:38,461 - INFO - Processed 157400000 reads so far
2011-05-20 06:22:41,971 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:162990131-183010131
2011-05-20 06:22:51,548 - INFO - Processed 157500000 reads so far
2011-05-20 06:23:00,404 - INFO - Processed 157600000 reads so far
2011-05-20 06:23:11,101 - INFO - Processed 157700000 reads so far
2011-05-20 06:23:12,619 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX_random:0-20010003
2011-05-20 06:23:20,046 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY:0-20010742
2011-05-20 06:23:21,122 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:48449-20068449
2011-05-20 06:23:22,180 - INFO - Processed 157800000 reads so far
2011-05-20 06:23:22,841 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:20160662-40180662
2011-05-20 06:23:24,095 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:40171228-60191228
2011-05-20 06:23:28,898 - INFO - Processed 157900000 reads so far
2011-05-20 06:23:31,677 - INFO - Processed 158000000 reads so far
2011-05-20 06:23:36,025 - INFO - Processed 158100000 reads so far
2011-05-20 06:23:42,022 - INFO - Processed 158200000 reads so far
2011-05-20 06:23:47,094 - INFO - Processed 158300000 reads so far
2011-05-20 06:23:51,160 - INFO - Processed 158400000 reads so far
2011-05-20 06:23:57,166 - INFO - Processed 158500000 reads so far
2011-05-20 06:24:00,193 - INFO - Processed 158600000 reads so far
2011-05-20 06:24:03,223 - INFO - Processed 158700000 reads so far
2011-05-20 06:24:06,272 - INFO - Processed 158800000 reads so far
2011-05-20 06:24:09,464 - INFO - Processed 158900000 reads so far
2011-05-20 06:24:12,417 - INFO - Processed 159000000 reads so far
2011-05-20 06:24:15,049 - INFO - Processed 159100000 reads so far
2011-05-20 06:24:18,299 - INFO - Processed 159200000 reads so far
2011-05-20 06:24:21,696 - INFO - Processed 159300000 reads so far
2011-05-20 06:24:22,011 - INFO - Finished loading data. Outputting QC metrics
2011-05-20 06:24:39,563 - INFO - Finished outputting QC metrics
2011-05-20 06:24:39,698 - INFO - Finished generating QC metrics