2011-05-19 15:51:28,972 - INFO - Generating QC metrics for BAM File ['WTCHG_11892.bam']
2011-05-19 15:51:28,972 - INFO - Output will go to WTCHG_11892.qc.txt.tmp
2011-05-19 15:51:28,972 - INFO - Reading GC Map from file /data/Genomes/gcMap/Mouse37.gcMap.gz
2011-05-19 15:54:30,634 - INFO - Finished reading GC Map
2011-05-19 15:54:30,635 - INFO - Reading CDS from exon definition file /data/Genomes/annotation/Mouse37.refGene.txt.gz
2011-05-19 15:54:32,657 - INFO - Read 382138 exons (33804740 nucleotides) for 32 chromosomes
2011-05-19 15:54:32,659 - INFO - Computing coverage cut-off
2011-05-19 15:54:32,659 - INFO - Retrieving BAM file coverage info from samtools pileup
2011-05-19 15:54:37,847 - INFO - Processed 1000000 pile-up sites
2011-05-19 15:54:42,698 - INFO - Processed 2000000 pile-up sites
2011-05-19 15:54:47,511 - INFO - Processed 3000000 pile-up sites
2011-05-19 15:54:52,420 - INFO - Processed 4000000 pile-up sites
2011-05-19 15:54:58,053 - INFO - Processed 5000000 pile-up sites
2011-05-19 15:55:02,617 - INFO - Processed 6000000 pile-up sites
2011-05-19 15:55:07,720 - INFO - Processed 7000000 pile-up sites
2011-05-19 15:55:11,680 - INFO - Processed 8000000 pile-up sites
2011-05-19 15:55:17,140 - INFO - Processed 9000000 pile-up sites
2011-05-19 15:55:22,226 - INFO - Processed 10000000 pile-up sites
2011-05-19 15:55:26,605 - INFO - Processed 11000000 pile-up sites
2011-05-19 15:55:30,982 - INFO - Processed 12000000 pile-up sites
2011-05-19 15:55:36,120 - INFO - Processed 13000000 pile-up sites
2011-05-19 15:55:40,495 - INFO - Processed 14000000 pile-up sites
2011-05-19 15:55:43,293 - INFO - Processed 15000000 pile-up sites
2011-05-19 15:55:47,696 - INFO - Processed 16000000 pile-up sites
2011-05-19 15:55:52,970 - INFO - Processed 17000000 pile-up sites
2011-05-19 15:55:57,555 - INFO - Processed 18000000 pile-up sites
2011-05-19 15:56:01,873 - INFO - Processed 19000000 pile-up sites
2011-05-19 15:56:08,242 - INFO - Processed 20000000 pile-up sites
2011-05-19 15:56:13,433 - INFO - Processed 21000000 pile-up sites
2011-05-19 15:56:22,153 - INFO - Processed 22000000 pile-up sites
2011-05-19 15:56:27,233 - INFO - Processed 23000000 pile-up sites
2011-05-19 15:56:32,008 - INFO - Processed 24000000 pile-up sites
2011-05-19 15:56:36,359 - INFO - Processed 25000000 pile-up sites
2011-05-19 15:56:40,982 - INFO - Processed 26000000 pile-up sites
2011-05-19 15:56:46,500 - INFO - Processed 27000000 pile-up sites
2011-05-19 15:56:50,377 - INFO - Processed 28000000 pile-up sites
2011-05-19 15:56:52,891 - INFO - Processed 29000000 pile-up sites
2011-05-19 15:56:56,944 - INFO - Processed 30000000 pile-up sites
2011-05-19 15:57:00,198 - INFO - Processed 31000000 pile-up sites
2011-05-19 15:57:04,248 - INFO - Processed 32000000 pile-up sites
2011-05-19 15:57:08,567 - INFO - Processed 33000000 pile-up sites
2011-05-19 15:57:12,899 - INFO - Processed 34000000 pile-up sites
2011-05-19 15:57:17,499 - INFO - Processed 35000000 pile-up sites
2011-05-19 15:57:24,051 - INFO - Processed 36000000 pile-up sites
2011-05-19 15:57:29,980 - INFO - Processed 37000000 pile-up sites
2011-05-19 15:57:34,123 - INFO - Finished processing pile-up on 37826175 sites (200000008 nucleotides)
2011-05-19 15:57:34,123 - INFO - Coverage cut-off value is 26
2011-05-19 15:57:34,123 - INFO - Loading data into QC data manager
2011-05-19 15:57:34,394 - INFO - Reading data from BAM file WTCHG_11892.bam. All reads in file will be read
2011-05-19 15:57:34,438 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:2990040-23010040
2011-05-19 15:57:45,069 - INFO - Processed 100000 reads so far
2011-05-19 15:57:55,591 - INFO - Processed 200000 reads so far
2011-05-19 15:58:08,298 - INFO - Processed 300000 reads so far
2011-05-19 15:58:19,252 - INFO - Processed 400000 reads so far
2011-05-19 15:58:30,364 - INFO - Processed 500000 reads so far
2011-05-19 15:58:41,421 - INFO - Processed 600000 reads so far
2011-05-19 15:58:52,706 - INFO - Processed 700000 reads so far
2011-05-19 15:59:03,818 - INFO - Processed 800000 reads so far
2011-05-19 15:59:14,608 - INFO - Processed 900000 reads so far
2011-05-19 15:59:25,088 - INFO - Processed 1000000 reads so far
2011-05-19 15:59:29,971 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:22990049-43010049
2011-05-19 15:59:38,146 - INFO - Processed 1100000 reads so far
2011-05-19 15:59:49,716 - INFO - Processed 1200000 reads so far
2011-05-19 16:00:01,286 - INFO - Processed 1300000 reads so far
2011-05-19 16:00:12,899 - INFO - Processed 1400000 reads so far
2011-05-19 16:00:24,679 - INFO - Processed 1500000 reads so far
2011-05-19 16:00:37,300 - INFO - Processed 1600000 reads so far
2011-05-19 16:00:49,333 - INFO - Processed 1700000 reads so far
2011-05-19 16:01:03,142 - INFO - Processed 1800000 reads so far
2011-05-19 16:01:15,220 - INFO - Processed 1900000 reads so far
2011-05-19 16:01:25,593 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:42990189-63010189
2011-05-19 16:01:25,712 - INFO - Processed 2000000 reads so far
2011-05-19 16:01:40,271 - INFO - Processed 2100000 reads so far
2011-05-19 16:01:51,391 - INFO - Processed 2200000 reads so far
2011-05-19 16:02:01,151 - INFO - Processed 2300000 reads so far
2011-05-19 16:02:12,955 - INFO - Processed 2400000 reads so far
2011-05-19 16:02:25,213 - INFO - Processed 2500000 reads so far
2011-05-19 16:02:36,322 - INFO - Processed 2600000 reads so far
2011-05-19 16:02:48,171 - INFO - Processed 2700000 reads so far
2011-05-19 16:03:00,143 - INFO - Processed 2800000 reads so far
2011-05-19 16:03:11,751 - INFO - Processed 2900000 reads so far
2011-05-19 16:03:19,895 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:62990190-83010190
2011-05-19 16:03:23,058 - INFO - Processed 3000000 reads so far
2011-05-19 16:03:35,143 - INFO - Processed 3100000 reads so far
2011-05-19 16:03:46,104 - INFO - Processed 3200000 reads so far
2011-05-19 16:03:58,070 - INFO - Processed 3300000 reads so far
2011-05-19 16:04:12,531 - INFO - Processed 3400000 reads so far
2011-05-19 16:04:21,439 - INFO - Processed 3500000 reads so far
2011-05-19 16:04:31,837 - INFO - Processed 3600000 reads so far
2011-05-19 16:04:41,622 - INFO - Processed 3700000 reads so far
2011-05-19 16:04:52,937 - INFO - Processed 3800000 reads so far
2011-05-19 16:05:04,634 - INFO - Processed 3900000 reads so far
2011-05-19 16:05:18,882 - INFO - Processed 4000000 reads so far
2011-05-19 16:05:22,631 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:82990202-103010202
2011-05-19 16:05:30,993 - INFO - Processed 4100000 reads so far
2011-05-19 16:05:43,146 - INFO - Processed 4200000 reads so far
2011-05-19 16:05:57,821 - INFO - Processed 4300000 reads so far
2011-05-19 16:06:09,287 - INFO - Processed 4400000 reads so far
2011-05-19 16:06:21,402 - INFO - Processed 4500000 reads so far
2011-05-19 16:06:34,725 - INFO - Processed 4600000 reads so far
2011-05-19 16:06:46,563 - INFO - Processed 4700000 reads so far
2011-05-19 16:06:57,160 - INFO - Processed 4800000 reads so far
2011-05-19 16:07:08,205 - INFO - Processed 4900000 reads so far
2011-05-19 16:07:19,709 - INFO - Processed 5000000 reads so far
2011-05-19 16:07:28,129 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:102990221-123010221
2011-05-19 16:07:31,436 - INFO - Processed 5100000 reads so far
2011-05-19 16:07:42,380 - INFO - Processed 5200000 reads so far
2011-05-19 16:07:52,830 - INFO - Processed 5300000 reads so far
2011-05-19 16:08:05,844 - INFO - Processed 5400000 reads so far
2011-05-19 16:08:18,311 - INFO - Processed 5500000 reads so far
2011-05-19 16:08:32,745 - INFO - Processed 5600000 reads so far
2011-05-19 16:09:05,218 - INFO - Processed 5700000 reads so far
2011-05-19 16:09:15,015 - INFO - Processed 5800000 reads so far
2011-05-19 16:09:27,585 - INFO - Processed 5900000 reads so far
2011-05-19 16:09:38,886 - INFO - Processed 6000000 reads so far
2011-05-19 16:09:46,129 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:122990230-143010230
2011-05-19 16:09:50,536 - INFO - Processed 6100000 reads so far
2011-05-19 16:10:01,319 - INFO - Processed 6200000 reads so far
2011-05-19 16:10:12,860 - INFO - Processed 6300000 reads so far
2011-05-19 16:10:25,104 - INFO - Processed 6400000 reads so far
2011-05-19 16:10:26,698 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:2990001-23010001
2011-05-19 16:10:36,048 - INFO - Processed 6500000 reads so far
2011-05-19 16:10:46,030 - INFO - Processed 6600000 reads so far
2011-05-19 16:10:57,597 - INFO - Processed 6700000 reads so far
2011-05-19 16:11:09,533 - INFO - Processed 6800000 reads so far
2011-05-19 16:11:22,031 - INFO - Processed 6900000 reads so far
2011-05-19 16:11:34,976 - INFO - Processed 7000000 reads so far
2011-05-19 16:11:47,178 - INFO - Processed 7100000 reads so far
2011-05-19 16:11:58,908 - INFO - Processed 7200000 reads so far
2011-05-19 16:12:11,135 - INFO - Processed 7300000 reads so far
2011-05-19 16:12:23,899 - INFO - Processed 7400000 reads so far
2011-05-19 16:12:34,597 - INFO - Processed 7500000 reads so far
2011-05-19 16:12:48,442 - INFO - Processed 7600000 reads so far
2011-05-19 16:12:51,008 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:22990033-43010033
2011-05-19 16:13:05,125 - INFO - Processed 7700000 reads so far
2011-05-19 16:13:16,587 - INFO - Processed 7800000 reads so far
2011-05-19 16:13:28,810 - INFO - Processed 7900000 reads so far
2011-05-19 16:13:40,586 - INFO - Processed 8000000 reads so far
2011-05-19 16:13:52,170 - INFO - Processed 8100000 reads so far
2011-05-19 16:14:03,621 - INFO - Processed 8200000 reads so far
2011-05-19 16:14:15,561 - INFO - Processed 8300000 reads so far
2011-05-19 16:14:28,364 - INFO - Processed 8400000 reads so far
2011-05-19 16:14:40,046 - INFO - Processed 8500000 reads so far
2011-05-19 16:14:49,076 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:42990043-63010043
2011-05-19 16:14:50,755 - INFO - Processed 8600000 reads so far
2011-05-19 16:15:01,357 - INFO - Processed 8700000 reads so far
2011-05-19 16:15:13,760 - INFO - Processed 8800000 reads so far
2011-05-19 16:15:25,358 - INFO - Processed 8900000 reads so far
2011-05-19 16:15:34,916 - INFO - Processed 9000000 reads so far
2011-05-19 16:15:46,735 - INFO - Processed 9100000 reads so far
2011-05-19 16:15:57,979 - INFO - Processed 9200000 reads so far
2011-05-19 16:16:09,794 - INFO - Processed 9300000 reads so far
2011-05-19 16:16:21,461 - INFO - Processed 9400000 reads so far
2011-05-19 16:16:34,695 - INFO - Processed 9500000 reads so far
2011-05-19 16:17:14,809 - INFO - Processed 9600000 reads so far
2011-05-19 16:17:27,022 - INFO - Processed 9700000 reads so far
2011-05-19 16:17:28,197 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:62990184-83010184
2011-05-19 16:17:35,385 - INFO - Processed 9800000 reads so far
2011-05-19 16:17:47,319 - INFO - Processed 9900000 reads so far
2011-05-19 16:17:57,570 - INFO - Processed 10000000 reads so far
2011-05-19 16:18:05,602 - INFO - Processed 10100000 reads so far
2011-05-19 16:18:13,209 - INFO - Processed 10200000 reads so far
2011-05-19 16:18:21,830 - INFO - Processed 10300000 reads so far
2011-05-19 16:18:31,867 - INFO - Processed 10400000 reads so far
2011-05-19 16:18:45,270 - INFO - Processed 10500000 reads so far
2011-05-19 16:18:54,798 - INFO - Processed 10600000 reads so far
2011-05-19 16:19:02,952 - INFO - Processed 10700000 reads so far
2011-05-19 16:19:12,151 - INFO - Processed 10800000 reads so far
2011-05-19 16:19:14,137 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:82990192-103010192
2011-05-19 16:19:20,903 - INFO - Processed 10900000 reads so far
2011-05-19 16:19:30,370 - INFO - Processed 11000000 reads so far
2011-05-19 16:19:42,447 - INFO - Processed 11100000 reads so far
2011-05-19 16:19:53,182 - INFO - Processed 11200000 reads so far
2011-05-19 16:20:04,087 - INFO - Processed 11300000 reads so far
2011-05-19 16:20:16,008 - INFO - Processed 11400000 reads so far
2011-05-19 16:20:28,410 - INFO - Processed 11500000 reads so far
2011-05-19 16:20:41,007 - INFO - Processed 11600000 reads so far
2011-05-19 16:20:55,057 - INFO - Processed 11700000 reads so far
2011-05-19 16:21:08,879 - INFO - Processed 11800000 reads so far
2011-05-19 16:21:18,514 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:102990209-123010209
2011-05-19 16:21:20,917 - INFO - Processed 11900000 reads so far
2011-05-19 16:21:32,891 - INFO - Processed 12000000 reads so far
2011-05-19 16:21:46,350 - INFO - Processed 12100000 reads so far
2011-05-19 16:21:57,778 - INFO - Processed 12200000 reads so far
2011-05-19 16:22:08,016 - INFO - Processed 12300000 reads so far
2011-05-19 16:22:20,251 - INFO - Processed 12400000 reads so far
2011-05-19 16:22:32,372 - INFO - Processed 12500000 reads so far
2011-05-19 16:22:45,448 - INFO - Processed 12600000 reads so far
2011-05-19 16:22:57,346 - INFO - Processed 12700000 reads so far
2011-05-19 16:23:08,453 - INFO - Processed 12800000 reads so far
2011-05-19 16:23:19,669 - INFO - Processed 12900000 reads so far
2011-05-19 16:23:26,044 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:2990088-23010088
2011-05-19 16:23:30,266 - INFO - Processed 13000000 reads so far
2011-05-19 16:23:40,502 - INFO - Processed 13100000 reads so far
2011-05-19 16:23:50,046 - INFO - Processed 13200000 reads so far
2011-05-19 16:24:00,982 - INFO - Processed 13300000 reads so far
2011-05-19 16:24:13,782 - INFO - Processed 13400000 reads so far
2011-05-19 16:24:25,342 - INFO - Processed 13500000 reads so far
2011-05-19 16:24:34,125 - INFO - Processed 13600000 reads so far
2011-05-19 16:24:42,459 - INFO - Processed 13700000 reads so far
2011-05-19 16:24:53,974 - INFO - Processed 13800000 reads so far
2011-05-19 16:25:03,471 - INFO - Processed 13900000 reads so far
2011-05-19 16:25:15,788 - INFO - Processed 14000000 reads so far
2011-05-19 16:25:28,279 - INFO - Processed 14100000 reads so far
2011-05-19 16:25:38,022 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:22990212-43010212
2011-05-19 16:25:39,558 - INFO - Processed 14200000 reads so far
2011-05-19 16:25:50,615 - INFO - Processed 14300000 reads so far
2011-05-19 16:26:03,195 - INFO - Processed 14400000 reads so far
2011-05-19 16:26:15,139 - INFO - Processed 14500000 reads so far
2011-05-19 16:26:25,772 - INFO - Processed 14600000 reads so far
2011-05-19 16:26:36,835 - INFO - Processed 14700000 reads so far
2011-05-19 16:26:47,774 - INFO - Processed 14800000 reads so far
2011-05-19 16:27:00,010 - INFO - Processed 14900000 reads so far
2011-05-19 16:27:10,838 - INFO - Processed 15000000 reads so far
2011-05-19 16:27:23,479 - INFO - Processed 15100000 reads so far
2011-05-19 16:27:31,481 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:42990323-63010323
2011-05-19 16:27:36,035 - INFO - Processed 15200000 reads so far
2011-05-19 16:27:49,222 - INFO - Processed 15300000 reads so far
2011-05-19 16:28:02,080 - INFO - Processed 15400000 reads so far
2011-05-19 16:28:16,930 - INFO - Processed 15500000 reads so far
2011-05-19 16:28:30,530 - INFO - Processed 15600000 reads so far
2011-05-19 16:28:45,887 - INFO - Processed 15700000 reads so far
2011-05-19 16:29:00,315 - INFO - Processed 15800000 reads so far
2011-05-19 16:29:12,264 - INFO - Processed 15900000 reads so far
2011-05-19 16:29:29,316 - INFO - Processed 16000000 reads so far
2011-05-19 16:29:38,317 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:62990352-83010352
2011-05-19 16:29:45,792 - INFO - Processed 16100000 reads so far
2011-05-19 16:29:56,438 - INFO - Processed 16200000 reads so far
2011-05-19 16:30:07,681 - INFO - Processed 16300000 reads so far
2011-05-19 16:30:18,440 - INFO - Processed 16400000 reads so far
2011-05-19 16:30:30,743 - INFO - Processed 16500000 reads so far
2011-05-19 16:30:42,914 - INFO - Processed 16600000 reads so far
2011-05-19 16:30:55,420 - INFO - Processed 16700000 reads so far
2011-05-19 16:31:09,451 - INFO - Processed 16800000 reads so far
2011-05-19 16:31:20,584 - INFO - Processed 16900000 reads so far
2011-05-19 16:31:42,488 - INFO - Processed 17000000 reads so far
2011-05-19 16:31:47,927 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:82990375-103010375
2011-05-19 16:31:57,603 - INFO - Processed 17100000 reads so far
2011-05-19 16:32:12,974 - INFO - Processed 17200000 reads so far
2011-05-19 16:32:26,946 - INFO - Processed 17300000 reads so far
2011-05-19 16:32:39,687 - INFO - Processed 17400000 reads so far
2011-05-19 16:32:52,712 - INFO - Processed 17500000 reads so far
2011-05-19 16:33:03,244 - INFO - Processed 17600000 reads so far
2011-05-19 16:33:14,779 - INFO - Processed 17700000 reads so far
2011-05-19 16:33:26,169 - INFO - Processed 17800000 reads so far
2011-05-19 16:33:38,910 - INFO - Processed 17900000 reads so far
2011-05-19 16:33:49,824 - INFO - Processed 18000000 reads so far
2011-05-19 16:33:54,349 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:102990382-123010382
2011-05-19 16:34:05,537 - INFO - Processed 18100000 reads so far
2011-05-19 16:34:19,919 - INFO - Processed 18200000 reads so far
2011-05-19 16:34:32,349 - INFO - Processed 18300000 reads so far
2011-05-19 16:34:43,698 - INFO - Processed 18400000 reads so far
2011-05-19 16:34:56,581 - INFO - Processed 18500000 reads so far
2011-05-19 16:35:08,030 - INFO - Processed 18600000 reads so far
2011-05-19 16:35:19,276 - INFO - Processed 18700000 reads so far
2011-05-19 16:35:31,264 - INFO - Processed 18800000 reads so far
2011-05-19 16:35:41,914 - INFO - Processed 18900000 reads so far
2011-05-19 16:35:53,971 - INFO - Processed 19000000 reads so far
2011-05-19 16:36:05,278 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:2990000-23010000
2011-05-19 16:36:05,422 - INFO - Processed 19100000 reads so far
2011-05-19 16:36:17,251 - INFO - Processed 19200000 reads so far
2011-05-19 16:36:29,520 - INFO - Processed 19300000 reads so far
2011-05-19 16:36:40,927 - INFO - Processed 19400000 reads so far
2011-05-19 16:36:50,488 - INFO - Processed 19500000 reads so far
2011-05-19 16:37:02,161 - INFO - Processed 19600000 reads so far
2011-05-19 16:37:13,632 - INFO - Processed 19700000 reads so far
2011-05-19 16:37:26,614 - INFO - Processed 19800000 reads so far
2011-05-19 16:37:38,200 - INFO - Processed 19900000 reads so far
2011-05-19 16:37:49,381 - INFO - Processed 20000000 reads so far
2011-05-19 16:37:56,024 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:22990048-43010048
2011-05-19 16:38:02,375 - INFO - Processed 20100000 reads so far
2011-05-19 16:38:13,936 - INFO - Processed 20200000 reads so far
2011-05-19 16:38:25,959 - INFO - Processed 20300000 reads so far
2011-05-19 16:38:35,994 - INFO - Processed 20400000 reads so far
2011-05-19 16:40:18,138 - INFO - Processed 20500000 reads so far
2011-05-19 16:40:29,119 - INFO - Processed 20600000 reads so far
2011-05-19 16:40:39,613 - INFO - Processed 20700000 reads so far
2011-05-19 16:40:50,947 - INFO - Processed 20800000 reads so far
2011-05-19 16:41:01,548 - INFO - Processed 20900000 reads so far
2011-05-19 16:41:13,994 - INFO - Processed 21000000 reads so far
2011-05-19 16:41:24,515 - INFO - Processed 21100000 reads so far
2011-05-19 16:41:27,247 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:42990055-63010055
2011-05-19 16:41:35,980 - INFO - Processed 21200000 reads so far
2011-05-19 16:41:46,764 - INFO - Processed 21300000 reads so far
2011-05-19 16:41:59,490 - INFO - Processed 21400000 reads so far
2011-05-19 16:42:10,270 - INFO - Processed 21500000 reads so far
2011-05-19 16:42:22,185 - INFO - Processed 21600000 reads so far
2011-05-19 16:42:33,709 - INFO - Processed 21700000 reads so far
2011-05-19 16:42:44,895 - INFO - Processed 21800000 reads so far
2011-05-19 16:42:59,233 - INFO - Processed 21900000 reads so far
2011-05-19 16:43:11,282 - INFO - Processed 22000000 reads so far
2011-05-19 16:43:25,635 - INFO - Processed 22100000 reads so far
2011-05-19 16:43:39,863 - INFO - Processed 22200000 reads so far
2011-05-19 16:43:48,596 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:62990058-83010058
2011-05-19 16:43:51,999 - INFO - Processed 22300000 reads so far
2011-05-19 16:44:05,176 - INFO - Processed 22400000 reads so far
2011-05-19 16:44:16,673 - INFO - Processed 22500000 reads so far
2011-05-19 16:44:30,105 - INFO - Processed 22600000 reads so far
2011-05-19 16:44:40,353 - INFO - Processed 22700000 reads so far
2011-05-19 16:44:57,506 - INFO - Processed 22800000 reads so far
2011-05-19 16:45:12,333 - INFO - Processed 22900000 reads so far
2011-05-19 16:45:28,091 - INFO - Processed 23000000 reads so far
2011-05-19 16:45:39,388 - INFO - Processed 23100000 reads so far
2011-05-19 16:45:52,593 - INFO - Processed 23200000 reads so far
2011-05-19 16:46:00,852 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:82990134-103010134
2011-05-19 16:46:02,900 - INFO - Processed 23300000 reads so far
2011-05-19 16:46:18,119 - INFO - Processed 23400000 reads so far
2011-05-19 16:46:35,213 - INFO - Processed 23500000 reads so far
2011-05-19 16:46:48,734 - INFO - Processed 23600000 reads so far
2011-05-19 16:47:00,517 - INFO - Processed 23700000 reads so far
2011-05-19 16:47:12,786 - INFO - Processed 23800000 reads so far
2011-05-19 16:47:24,059 - INFO - Processed 23900000 reads so far
2011-05-19 16:47:36,626 - INFO - Processed 24000000 reads so far
2011-05-19 16:47:48,338 - INFO - Processed 24100000 reads so far
2011-05-19 16:48:06,130 - INFO - Processed 24200000 reads so far
2011-05-19 16:48:10,373 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:102990148-123010148
2011-05-19 16:48:19,665 - INFO - Processed 24300000 reads so far
2011-05-19 16:48:35,215 - INFO - Processed 24400000 reads so far
2011-05-19 16:48:47,093 - INFO - Processed 24500000 reads so far
2011-05-19 16:48:58,745 - INFO - Processed 24600000 reads so far
2011-05-19 16:49:09,650 - INFO - Processed 24700000 reads so far
2011-05-19 16:49:26,030 - INFO - Processed 24800000 reads so far
2011-05-19 16:49:37,624 - INFO - Processed 24900000 reads so far
2011-05-19 16:49:49,356 - INFO - Processed 25000000 reads so far
2011-05-19 16:49:59,267 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13_random:0-20010000
2011-05-19 16:50:00,303 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:2990009-23010009
2011-05-19 16:50:00,645 - INFO - Processed 25100000 reads so far
2011-05-19 16:50:13,194 - INFO - Processed 25200000 reads so far
2011-05-19 16:50:26,757 - INFO - Processed 25300000 reads so far
2011-05-19 16:50:38,607 - INFO - Processed 25400000 reads so far
2011-05-19 16:50:50,025 - INFO - Processed 25500000 reads so far
2011-05-19 16:51:02,898 - INFO - Processed 25600000 reads so far
2011-05-19 16:51:15,087 - INFO - Processed 25700000 reads so far
2011-05-19 16:51:26,459 - INFO - Processed 25800000 reads so far
2011-05-19 16:51:38,631 - INFO - Processed 25900000 reads so far
2011-05-19 16:51:49,500 - INFO - Processed 26000000 reads so far
2011-05-19 16:52:02,870 - INFO - Processed 26100000 reads so far
2011-05-19 16:52:07,348 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:22990032-43010032
2011-05-19 16:52:15,211 - INFO - Processed 26200000 reads so far
2011-05-19 16:52:28,094 - INFO - Processed 26300000 reads so far
2011-05-19 16:52:42,937 - INFO - Processed 26400000 reads so far
2011-05-19 16:52:57,620 - INFO - Processed 26500000 reads so far
2011-05-19 16:53:10,428 - INFO - Processed 26600000 reads so far
2011-05-19 16:53:22,021 - INFO - Processed 26700000 reads so far
2011-05-19 16:53:38,115 - INFO - Processed 26800000 reads so far
2011-05-19 16:53:51,523 - INFO - Processed 26900000 reads so far
2011-05-19 16:54:11,056 - INFO - Processed 27000000 reads so far
2011-05-19 16:54:22,841 - INFO - Processed 27100000 reads so far
2011-05-19 16:54:33,430 - INFO - Processed 27200000 reads so far
2011-05-19 16:54:34,418 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:42990127-63010127
2011-05-19 16:54:44,687 - INFO - Processed 27300000 reads so far
2011-05-19 16:55:01,527 - INFO - Processed 27400000 reads so far
2011-05-19 16:55:12,209 - INFO - Processed 27500000 reads so far
2011-05-19 16:55:23,414 - INFO - Processed 27600000 reads so far
2011-05-19 16:55:34,221 - INFO - Processed 27700000 reads so far
2011-05-19 16:55:46,716 - INFO - Processed 27800000 reads so far
2011-05-19 16:55:58,056 - INFO - Processed 27900000 reads so far
2011-05-19 16:56:09,760 - INFO - Processed 28000000 reads so far
2011-05-19 16:56:22,687 - INFO - Processed 28100000 reads so far
2011-05-19 16:56:35,070 - INFO - Processed 28200000 reads so far
2011-05-19 16:56:47,567 - INFO - Processed 28300000 reads so far
2011-05-19 16:56:50,696 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:62990139-83010139
2011-05-19 16:56:59,313 - INFO - Processed 28400000 reads so far
2011-05-19 16:57:10,630 - INFO - Processed 28500000 reads so far
2011-05-19 16:57:22,635 - INFO - Processed 28600000 reads so far
2011-05-19 16:57:33,875 - INFO - Processed 28700000 reads so far
2011-05-19 16:57:47,092 - INFO - Processed 28800000 reads so far
2011-05-19 16:57:58,004 - INFO - Processed 28900000 reads so far
2011-05-19 16:58:09,625 - INFO - Processed 29000000 reads so far
2011-05-19 16:58:20,780 - INFO - Processed 29100000 reads so far
2011-05-19 16:58:31,846 - INFO - Processed 29200000 reads so far
2011-05-19 16:58:42,254 - INFO - Processed 29300000 reads so far
2011-05-19 16:58:55,390 - INFO - Processed 29400000 reads so far
2011-05-19 16:58:57,328 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:82990147-103010147
2011-05-19 16:59:07,363 - INFO - Processed 29500000 reads so far
2011-05-19 16:59:18,015 - INFO - Processed 29600000 reads so far
2011-05-19 16:59:31,178 - INFO - Processed 29700000 reads so far
2011-05-19 16:59:43,117 - INFO - Processed 29800000 reads so far
2011-05-19 16:59:53,425 - INFO - Processed 29900000 reads so far
2011-05-19 17:00:07,031 - INFO - Processed 30000000 reads so far
2011-05-19 17:00:17,680 - INFO - Processed 30100000 reads so far
2011-05-19 17:00:28,344 - INFO - Processed 30200000 reads so far
2011-05-19 17:00:30,810 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:102990151-123010151
2011-05-19 17:00:41,113 - INFO - Processed 30300000 reads so far
2011-05-19 17:00:51,514 - INFO - Processed 30400000 reads so far
2011-05-19 17:01:04,171 - INFO - Processed 30500000 reads so far
2011-05-19 17:01:19,144 - INFO - Processed 30600000 reads so far
2011-05-19 17:01:35,616 - INFO - Processed 30700000 reads so far
2011-05-19 17:01:47,399 - INFO - Processed 30800000 reads so far
2011-05-19 17:02:00,519 - INFO - Processed 30900000 reads so far
2011-05-19 17:02:16,027 - INFO - Processed 31000000 reads so far
2011-05-19 17:02:30,960 - INFO - Processed 31100000 reads so far
2011-05-19 17:02:37,417 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:122990169-143010169
2011-05-19 17:02:43,380 - INFO - Processed 31200000 reads so far
2011-05-19 17:02:49,095 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:2990001-23010001
2011-05-19 17:02:55,159 - INFO - Processed 31300000 reads so far
2011-05-19 17:03:06,430 - INFO - Processed 31400000 reads so far
2011-05-19 17:03:17,333 - INFO - Processed 31500000 reads so far
2011-05-19 17:03:32,670 - INFO - Processed 31600000 reads so far
2011-05-19 17:03:48,871 - INFO - Processed 31700000 reads so far
2011-05-19 17:04:02,437 - INFO - Processed 31800000 reads so far
2011-05-19 17:04:13,575 - INFO - Processed 31900000 reads so far
2011-05-19 17:04:25,497 - INFO - Processed 32000000 reads so far
2011-05-19 17:04:36,938 - INFO - Processed 32100000 reads so far
2011-05-19 17:04:42,728 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:22990023-43010023
2011-05-19 17:04:51,131 - INFO - Processed 32200000 reads so far
2011-05-19 17:05:02,887 - INFO - Processed 32300000 reads so far
2011-05-19 17:05:15,134 - INFO - Processed 32400000 reads so far
2011-05-19 17:05:26,362 - INFO - Processed 32500000 reads so far
2011-05-19 17:05:39,990 - INFO - Processed 32600000 reads so far
2011-05-19 17:05:55,197 - INFO - Processed 32700000 reads so far
2011-05-19 17:06:09,911 - INFO - Processed 32800000 reads so far
2011-05-19 17:06:24,903 - INFO - Processed 32900000 reads so far
2011-05-19 17:06:36,274 - INFO - Processed 33000000 reads so far
2011-05-19 17:06:48,007 - INFO - Processed 33100000 reads so far
2011-05-19 17:06:55,538 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:42990027-63010027
2011-05-19 17:07:02,067 - INFO - Processed 33200000 reads so far
2011-05-19 17:07:15,454 - INFO - Processed 33300000 reads so far
2011-05-19 17:07:26,866 - INFO - Processed 33400000 reads so far
2011-05-19 17:07:40,398 - INFO - Processed 33500000 reads so far
2011-05-19 17:07:55,245 - INFO - Processed 33600000 reads so far
2011-05-19 17:08:06,519 - INFO - Processed 33700000 reads so far
2011-05-19 17:08:19,779 - INFO - Processed 33800000 reads so far
2011-05-19 17:08:30,893 - INFO - Processed 33900000 reads so far
2011-05-19 17:08:42,154 - INFO - Processed 34000000 reads so far
2011-05-19 17:08:53,214 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:62990045-83010045
2011-05-19 17:08:55,067 - INFO - Processed 34100000 reads so far
2011-05-19 17:09:06,654 - INFO - Processed 34200000 reads so far
2011-05-19 17:09:18,972 - INFO - Processed 34300000 reads so far
2011-05-19 17:09:29,428 - INFO - Processed 34400000 reads so far
2011-05-19 17:09:39,342 - INFO - Processed 34500000 reads so far
2011-05-19 17:09:51,480 - INFO - Processed 34600000 reads so far
2011-05-19 17:10:05,126 - INFO - Processed 34700000 reads so far
2011-05-19 17:10:16,394 - INFO - Processed 34800000 reads so far
2011-05-19 17:10:28,125 - INFO - Processed 34900000 reads so far
2011-05-19 17:10:39,774 - INFO - Processed 35000000 reads so far
2011-05-19 17:10:51,665 - INFO - Processed 35100000 reads so far
2011-05-19 17:11:04,224 - INFO - Processed 35200000 reads so far
2011-05-19 17:11:08,781 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:82990056-103010056
2011-05-19 17:11:16,029 - INFO - Processed 35300000 reads so far
2011-05-19 17:11:26,490 - INFO - Processed 35400000 reads so far
2011-05-19 17:11:39,873 - INFO - Processed 35500000 reads so far
2011-05-19 17:11:50,901 - INFO - Processed 35600000 reads so far
2011-05-19 17:12:02,168 - INFO - Processed 35700000 reads so far
2011-05-19 17:12:10,598 - INFO - Processed 35800000 reads so far
2011-05-19 17:12:18,509 - INFO - Processed 35900000 reads so far
2011-05-19 17:12:27,739 - INFO - Processed 36000000 reads so far
2011-05-19 17:12:40,341 - INFO - Processed 36100000 reads so far
2011-05-19 17:12:52,977 - INFO - Processed 36200000 reads so far
2011-05-19 17:13:05,484 - INFO - Processed 36300000 reads so far
2011-05-19 17:13:15,839 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:102990059-123010059
2011-05-19 17:13:18,424 - INFO - Processed 36400000 reads so far
2011-05-19 17:13:19,327 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:2990056-23010056
2011-05-19 17:13:30,649 - INFO - Processed 36500000 reads so far
2011-05-19 17:13:45,523 - INFO - Processed 36600000 reads so far
2011-05-19 17:14:00,839 - INFO - Processed 36700000 reads so far
2011-05-19 17:14:11,683 - INFO - Processed 36800000 reads so far
2011-05-19 17:14:27,977 - INFO - Processed 36900000 reads so far
2011-05-19 17:14:39,322 - INFO - Processed 37000000 reads so far
2011-05-19 17:14:51,333 - INFO - Processed 37100000 reads so far
2011-05-19 17:15:05,382 - INFO - Processed 37200000 reads so far
2011-05-19 17:15:18,127 - INFO - Processed 37300000 reads so far
2011-05-19 17:15:29,887 - INFO - Processed 37400000 reads so far
2011-05-19 17:15:40,733 - INFO - Processed 37500000 reads so far
2011-05-19 17:15:48,112 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:22990060-43010060
2011-05-19 17:15:51,437 - INFO - Processed 37600000 reads so far
2011-05-19 17:16:00,628 - INFO - Processed 37700000 reads so far
2011-05-19 17:16:11,399 - INFO - Processed 37800000 reads so far
2011-05-19 17:16:26,899 - INFO - Processed 37900000 reads so far
2011-05-19 17:16:40,677 - INFO - Processed 38000000 reads so far
2011-05-19 17:16:52,152 - INFO - Processed 38100000 reads so far
2011-05-19 17:17:05,159 - INFO - Processed 38200000 reads so far
2011-05-19 17:17:16,596 - INFO - Processed 38300000 reads so far
2011-05-19 17:17:28,156 - INFO - Processed 38400000 reads so far
2011-05-19 17:17:41,245 - INFO - Processed 38500000 reads so far
2011-05-19 17:17:52,145 - INFO - Processed 38600000 reads so far
2011-05-19 17:17:54,461 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:42990084-63010084
2011-05-19 17:18:04,941 - INFO - Processed 38700000 reads so far
2011-05-19 17:18:22,550 - INFO - Processed 38800000 reads so far
2011-05-19 17:18:35,502 - INFO - Processed 38900000 reads so far
2011-05-19 17:18:49,167 - INFO - Processed 39000000 reads so far
2011-05-19 17:19:01,064 - INFO - Processed 39100000 reads so far
2011-05-19 17:19:12,268 - INFO - Processed 39200000 reads so far
2011-05-19 17:19:26,289 - INFO - Processed 39300000 reads so far
2011-05-19 17:19:35,255 - INFO - Processed 39400000 reads so far
2011-05-19 17:19:47,700 - INFO - Processed 39500000 reads so far
2011-05-19 17:19:50,844 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:62990093-83010093
2011-05-19 17:20:01,561 - INFO - Processed 39600000 reads so far
2011-05-19 17:20:12,836 - INFO - Processed 39700000 reads so far
2011-05-19 17:20:24,412 - INFO - Processed 39800000 reads so far
2011-05-19 17:20:38,345 - INFO - Processed 39900000 reads so far
2011-05-19 17:20:50,637 - INFO - Processed 40000000 reads so far
2011-05-19 17:21:01,654 - INFO - Processed 40100000 reads so far
2011-05-19 17:21:14,987 - INFO - Processed 40200000 reads so far
2011-05-19 17:21:26,230 - INFO - Processed 40300000 reads so far
2011-05-19 17:21:32,571 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:82990144-103010144
2011-05-19 17:21:39,660 - INFO - Processed 40400000 reads so far
2011-05-19 17:21:50,569 - INFO - Processed 40500000 reads so far
2011-05-19 17:22:03,114 - INFO - Processed 40600000 reads so far
2011-05-19 17:22:16,682 - INFO - Processed 40700000 reads so far
2011-05-19 17:22:28,473 - INFO - Processed 40800000 reads so far
2011-05-19 17:22:40,430 - INFO - Processed 40900000 reads so far
2011-05-19 17:22:51,728 - INFO - Processed 41000000 reads so far
2011-05-19 17:23:04,045 - INFO - Processed 41100000 reads so far
2011-05-19 17:23:18,975 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16_random:0-20010038
2011-05-19 17:23:19,000 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:2989979-23009979
2011-05-19 17:23:19,859 - INFO - Processed 41200000 reads so far
2011-05-19 17:23:33,038 - INFO - Processed 41300000 reads so far
2011-05-19 17:23:45,079 - INFO - Processed 41400000 reads so far
2011-05-19 17:24:00,580 - INFO - Processed 41500000 reads so far
2011-05-19 17:24:12,103 - INFO - Processed 41600000 reads so far
2011-05-19 17:24:23,607 - INFO - Processed 41700000 reads so far
2011-05-19 17:24:38,242 - INFO - Processed 41800000 reads so far
2011-05-19 17:24:48,968 - INFO - Processed 41900000 reads so far
2011-05-19 17:25:00,363 - INFO - Processed 42000000 reads so far
2011-05-19 17:25:14,863 - INFO - Processed 42100000 reads so far
2011-05-19 17:25:27,489 - INFO - Processed 42200000 reads so far
2011-05-19 17:25:38,506 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:22990136-43010136
2011-05-19 17:25:44,536 - INFO - Processed 42300000 reads so far
2011-05-19 17:25:59,078 - INFO - Processed 42400000 reads so far
2011-05-19 17:26:10,446 - INFO - Processed 42500000 reads so far
2011-05-19 17:26:22,105 - INFO - Processed 42600000 reads so far
2011-05-19 17:26:35,212 - INFO - Processed 42700000 reads so far
2011-05-19 17:26:48,225 - INFO - Processed 42800000 reads so far
2011-05-19 17:27:02,124 - INFO - Processed 42900000 reads so far
2011-05-19 17:27:13,404 - INFO - Processed 43000000 reads so far
2011-05-19 17:27:24,675 - INFO - Processed 43100000 reads so far
2011-05-19 17:27:36,311 - INFO - Processed 43200000 reads so far
2011-05-19 17:27:47,140 - INFO - Processed 43300000 reads so far
2011-05-19 17:27:57,213 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:42990163-63010163
2011-05-19 17:27:58,915 - INFO - Processed 43400000 reads so far
2011-05-19 17:28:12,575 - INFO - Processed 43500000 reads so far
2011-05-19 17:28:24,090 - INFO - Processed 43600000 reads so far
2011-05-19 17:28:37,078 - INFO - Processed 43700000 reads so far
2011-05-19 17:28:48,961 - INFO - Processed 43800000 reads so far
2011-05-19 17:29:00,960 - INFO - Processed 43900000 reads so far
2011-05-19 17:29:14,489 - INFO - Processed 44000000 reads so far
2011-05-19 17:29:28,604 - INFO - Processed 44100000 reads so far
2011-05-19 17:29:40,382 - INFO - Processed 44200000 reads so far
2011-05-19 17:29:55,932 - INFO - Processed 44300000 reads so far
2011-05-19 17:30:06,092 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:62990174-83010174
2011-05-19 17:30:07,888 - INFO - Processed 44400000 reads so far
2011-05-19 17:30:21,474 - INFO - Processed 44500000 reads so far
2011-05-19 17:30:35,121 - INFO - Processed 44600000 reads so far
2011-05-19 17:30:46,762 - INFO - Processed 44700000 reads so far
2011-05-19 17:30:59,041 - INFO - Processed 44800000 reads so far
2011-05-19 17:31:12,626 - INFO - Processed 44900000 reads so far
2011-05-19 17:31:26,329 - INFO - Processed 45000000 reads so far
2011-05-19 17:31:41,233 - INFO - Processed 45100000 reads so far
2011-05-19 17:31:52,913 - INFO - Processed 45200000 reads so far
2011-05-19 17:32:05,608 - INFO - Processed 45300000 reads so far
2011-05-19 17:32:17,558 - INFO - Processed 45400000 reads so far
2011-05-19 17:32:21,955 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:82990352-103010352
2011-05-19 17:32:29,595 - INFO - Processed 45500000 reads so far
2011-05-19 17:32:44,383 - INFO - Processed 45600000 reads so far
2011-05-19 17:32:58,048 - INFO - Processed 45700000 reads so far
2011-05-19 17:33:09,435 - INFO - Processed 45800000 reads so far
2011-05-19 17:33:23,374 - INFO - Processed 45900000 reads so far
2011-05-19 17:33:36,158 - INFO - Processed 46000000 reads so far
2011-05-19 17:33:41,688 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17_random:0-20010090
2011-05-19 17:33:43,575 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:2990023-23010023
2011-05-19 17:33:49,250 - INFO - Processed 46100000 reads so far
2011-05-19 17:34:00,777 - INFO - Processed 46200000 reads so far
2011-05-19 17:34:15,379 - INFO - Processed 46300000 reads so far
2011-05-19 17:34:29,384 - INFO - Processed 46400000 reads so far
2011-05-19 17:34:42,395 - INFO - Processed 46500000 reads so far
2011-05-19 17:34:54,970 - INFO - Processed 46600000 reads so far
2011-05-19 17:35:06,061 - INFO - Processed 46700000 reads so far
2011-05-19 17:35:17,970 - INFO - Processed 46800000 reads so far
2011-05-19 17:35:29,276 - INFO - Processed 46900000 reads so far
2011-05-19 17:35:43,285 - INFO - Processed 47000000 reads so far
2011-05-19 17:35:56,499 - INFO - Processed 47100000 reads so far
2011-05-19 17:35:57,627 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:22990064-43010064
2011-05-19 17:36:10,774 - INFO - Processed 47200000 reads so far
2011-05-19 17:36:21,938 - INFO - Processed 47300000 reads so far
2011-05-19 17:36:32,503 - INFO - Processed 47400000 reads so far
2011-05-19 17:36:43,361 - INFO - Processed 47500000 reads so far
2011-05-19 17:36:52,996 - INFO - Processed 47600000 reads so far
2011-05-19 17:37:06,525 - INFO - Processed 47700000 reads so far
2011-05-19 17:37:17,510 - INFO - Processed 47800000 reads so far
2011-05-19 17:37:30,109 - INFO - Processed 47900000 reads so far
2011-05-19 17:37:42,662 - INFO - Processed 48000000 reads so far
2011-05-19 17:37:53,381 - INFO - Processed 48100000 reads so far
2011-05-19 17:37:57,126 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:42990073-63010073
2011-05-19 17:38:06,100 - INFO - Processed 48200000 reads so far
2011-05-19 17:38:17,866 - INFO - Processed 48300000 reads so far
2011-05-19 17:38:31,877 - INFO - Processed 48400000 reads so far
2011-05-19 17:38:50,031 - INFO - Processed 48500000 reads so far
2011-05-19 17:39:01,713 - INFO - Processed 48600000 reads so far
2011-05-19 17:39:16,533 - INFO - Processed 48700000 reads so far
2011-05-19 17:39:27,126 - INFO - Processed 48800000 reads so far
2011-05-19 17:39:38,753 - INFO - Processed 48900000 reads so far
2011-05-19 17:39:51,301 - INFO - Processed 49000000 reads so far
2011-05-19 17:40:03,243 - INFO - Processed 49100000 reads so far
2011-05-19 17:40:07,435 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:62990130-83010130
2011-05-19 17:40:15,135 - INFO - Processed 49200000 reads so far
2011-05-19 17:40:28,376 - INFO - Processed 49300000 reads so far
2011-05-19 17:40:40,095 - INFO - Processed 49400000 reads so far
2011-05-19 17:40:54,966 - INFO - Processed 49500000 reads so far
2011-05-19 17:41:06,664 - INFO - Processed 49600000 reads so far
2011-05-19 17:41:17,868 - INFO - Processed 49700000 reads so far
2011-05-19 17:41:30,729 - INFO - Processed 49800000 reads so far
2011-05-19 17:41:42,455 - INFO - Processed 49900000 reads so far
2011-05-19 17:41:54,140 - INFO - Processed 50000000 reads so far
2011-05-19 17:42:08,926 - INFO - Processed 50100000 reads so far
2011-05-19 17:42:18,196 - INFO - Processed 50200000 reads so far
2011-05-19 17:42:21,541 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:82990141-103010141
2011-05-19 17:42:28,678 - INFO - Processed 50300000 reads so far
2011-05-19 17:42:43,264 - INFO - Processed 50400000 reads so far
2011-05-19 17:42:55,558 - INFO - Processed 50500000 reads so far
2011-05-19 17:43:07,575 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:2990068-23010068
2011-05-19 17:43:08,086 - INFO - Processed 50600000 reads so far
2011-05-19 17:43:25,214 - INFO - Processed 50700000 reads so far
2011-05-19 17:43:36,709 - INFO - Processed 50800000 reads so far
2011-05-19 17:43:47,585 - INFO - Processed 50900000 reads so far
2011-05-19 17:44:00,499 - INFO - Processed 51000000 reads so far
2011-05-19 17:44:09,352 - INFO - Processed 51100000 reads so far
2011-05-19 17:44:22,202 - INFO - Processed 51200000 reads so far
2011-05-19 17:44:33,314 - INFO - Processed 51300000 reads so far
2011-05-19 17:44:44,443 - INFO - Processed 51400000 reads so far
2011-05-19 17:44:55,535 - INFO - Processed 51500000 reads so far
2011-05-19 17:45:06,247 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:22990092-43010092
2011-05-19 17:45:06,482 - INFO - Processed 51600000 reads so far
2011-05-19 17:45:17,480 - INFO - Processed 51700000 reads so far
2011-05-19 17:45:29,316 - INFO - Processed 51800000 reads so far
2011-05-19 17:45:41,914 - INFO - Processed 51900000 reads so far
2011-05-19 17:45:52,611 - INFO - Processed 52000000 reads so far
2011-05-19 17:46:02,093 - INFO - Processed 52100000 reads so far
2011-05-19 17:46:13,127 - INFO - Processed 52200000 reads so far
2011-05-19 17:46:26,655 - INFO - Processed 52300000 reads so far
2011-05-19 17:46:39,314 - INFO - Processed 52400000 reads so far
2011-05-19 17:46:51,540 - INFO - Processed 52500000 reads so far
2011-05-19 17:47:03,409 - INFO - Processed 52600000 reads so far
2011-05-19 17:47:08,858 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:42990126-63010126
2011-05-19 17:47:15,119 - INFO - Processed 52700000 reads so far
2011-05-19 17:47:26,871 - INFO - Processed 52800000 reads so far
2011-05-19 17:47:42,340 - INFO - Processed 52900000 reads so far
2011-05-19 17:47:55,091 - INFO - Processed 53000000 reads so far
2011-05-19 17:48:07,066 - INFO - Processed 53100000 reads so far
2011-05-19 17:48:19,344 - INFO - Processed 53200000 reads so far
2011-05-19 17:48:30,256 - INFO - Processed 53300000 reads so far
2011-05-19 17:48:41,808 - INFO - Processed 53400000 reads so far
2011-05-19 17:48:54,520 - INFO - Processed 53500000 reads so far
2011-05-19 17:49:05,417 - INFO - Processed 53600000 reads so far
2011-05-19 17:49:12,015 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:2990009-23010009
2011-05-19 17:49:18,157 - INFO - Processed 53700000 reads so far
2011-05-19 17:49:30,412 - INFO - Processed 53800000 reads so far
2011-05-19 17:49:43,009 - INFO - Processed 53900000 reads so far
2011-05-19 17:49:56,603 - INFO - Processed 54000000 reads so far
2011-05-19 17:50:11,604 - INFO - Processed 54100000 reads so far
2011-05-19 17:50:23,125 - INFO - Processed 54200000 reads so far
2011-05-19 17:50:37,098 - INFO - Processed 54300000 reads so far
2011-05-19 17:50:50,258 - INFO - Processed 54400000 reads so far
2011-05-19 17:51:02,258 - INFO - Processed 54500000 reads so far
2011-05-19 17:51:16,334 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:22990046-43010046
2011-05-19 17:51:17,370 - INFO - Processed 54600000 reads so far
2011-05-19 17:51:28,699 - INFO - Processed 54700000 reads so far
2011-05-19 17:51:37,707 - INFO - Processed 54800000 reads so far
2011-05-19 17:51:47,668 - INFO - Processed 54900000 reads so far
2011-05-19 17:51:57,441 - INFO - Processed 55000000 reads so far
2011-05-19 17:52:04,742 - INFO - Processed 55100000 reads so far
2011-05-19 17:52:11,809 - INFO - Processed 55200000 reads so far
2011-05-19 17:52:19,214 - INFO - Processed 55300000 reads so far
2011-05-19 17:52:27,626 - INFO - Processed 55400000 reads so far
2011-05-19 17:52:37,406 - INFO - Processed 55500000 reads so far
2011-05-19 17:52:45,224 - INFO - Processed 55600000 reads so far
2011-05-19 17:52:45,389 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:42990055-63010055
2011-05-19 17:52:53,216 - INFO - Processed 55700000 reads so far
2011-05-19 17:53:06,271 - INFO - Processed 55800000 reads so far
2011-05-19 17:53:17,878 - INFO - Processed 55900000 reads so far
2011-05-19 17:53:29,005 - INFO - Processed 56000000 reads so far
2011-05-19 17:53:42,028 - INFO - Processed 56100000 reads so far
2011-05-19 17:53:52,873 - INFO - Processed 56200000 reads so far
2011-05-19 17:54:04,082 - INFO - Processed 56300000 reads so far
2011-05-19 17:54:17,905 - INFO - Processed 56400000 reads so far
2011-05-19 17:54:30,513 - INFO - Processed 56500000 reads so far
2011-05-19 17:54:37,666 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:62990057-83010057
2011-05-19 17:54:42,690 - INFO - Processed 56600000 reads so far
2011-05-19 17:54:56,170 - INFO - Processed 56700000 reads so far
2011-05-19 17:55:07,061 - INFO - Processed 56800000 reads so far
2011-05-19 17:55:19,213 - INFO - Processed 56900000 reads so far
2011-05-19 17:55:30,376 - INFO - Processed 57000000 reads so far
2011-05-19 17:55:40,815 - INFO - Processed 57100000 reads so far
2011-05-19 17:55:52,937 - INFO - Processed 57200000 reads so far
2011-05-19 17:56:03,754 - INFO - Processed 57300000 reads so far
2011-05-19 17:56:21,305 - INFO - Processed 57400000 reads so far
2011-05-19 17:56:34,601 - INFO - Processed 57500000 reads so far
2011-05-19 17:56:40,816 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:82990096-103010096
2011-05-19 17:56:46,109 - INFO - Processed 57600000 reads so far
2011-05-19 17:56:59,380 - INFO - Processed 57700000 reads so far
2011-05-19 17:57:10,975 - INFO - Processed 57800000 reads so far
2011-05-19 17:57:22,308 - INFO - Processed 57900000 reads so far
2011-05-19 17:57:34,330 - INFO - Processed 58000000 reads so far
2011-05-19 17:57:44,405 - INFO - Processed 58100000 reads so far
2011-05-19 17:57:54,653 - INFO - Processed 58200000 reads so far
2011-05-19 17:58:06,134 - INFO - Processed 58300000 reads so far
2011-05-19 17:58:18,339 - INFO - Processed 58400000 reads so far
2011-05-19 17:58:28,088 - INFO - Processed 58500000 reads so far
2011-05-19 17:58:34,262 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:102990104-123010104
2011-05-19 17:58:36,227 - INFO - Processed 58600000 reads so far
2011-05-19 17:58:49,258 - INFO - Processed 58700000 reads so far
2011-05-19 17:58:58,543 - INFO - Processed 58800000 reads so far
2011-05-19 17:59:08,998 - INFO - Processed 58900000 reads so far
2011-05-19 17:59:20,367 - INFO - Processed 59000000 reads so far
2011-05-19 17:59:31,997 - INFO - Processed 59100000 reads so far
2011-05-19 17:59:42,450 - INFO - Processed 59200000 reads so far
2011-05-19 17:59:54,126 - INFO - Processed 59300000 reads so far
2011-05-19 18:00:03,647 - INFO - Processed 59400000 reads so far
2011-05-19 18:00:11,645 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:122990142-143010142
2011-05-19 18:00:12,713 - INFO - Processed 59500000 reads so far
2011-05-19 18:00:21,483 - INFO - Processed 59600000 reads so far
2011-05-19 18:00:29,370 - INFO - Processed 59700000 reads so far
2011-05-19 18:00:38,959 - INFO - Processed 59800000 reads so far
2011-05-19 18:00:49,330 - INFO - Processed 59900000 reads so far
2011-05-19 18:01:00,501 - INFO - Processed 60000000 reads so far
2011-05-19 18:01:10,522 - INFO - Processed 60100000 reads so far
2011-05-19 18:01:19,484 - INFO - Processed 60200000 reads so far
2011-05-19 18:01:30,441 - INFO - Processed 60300000 reads so far
2011-05-19 18:01:39,966 - INFO - Processed 60400000 reads so far
2011-05-19 18:01:49,129 - INFO - Processed 60500000 reads so far
2011-05-19 18:01:55,654 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:142990143-163010143
2011-05-19 18:02:00,610 - INFO - Processed 60600000 reads so far
2011-05-19 18:02:12,482 - INFO - Processed 60700000 reads so far
2011-05-19 18:02:22,036 - INFO - Processed 60800000 reads so far
2011-05-19 18:02:30,590 - INFO - Processed 60900000 reads so far
2011-05-19 18:02:39,161 - INFO - Processed 61000000 reads so far
2011-05-19 18:02:49,053 - INFO - Processed 61100000 reads so far
2011-05-19 18:02:58,507 - INFO - Processed 61200000 reads so far
2011-05-19 18:03:07,341 - INFO - Processed 61300000 reads so far
2011-05-19 18:03:16,844 - INFO - Processed 61400000 reads so far
2011-05-19 18:03:27,006 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:162990183-183010183
2011-05-19 18:03:28,938 - INFO - Processed 61500000 reads so far
2011-05-19 18:03:40,054 - INFO - Processed 61600000 reads so far
2011-05-19 18:03:51,314 - INFO - Processed 61700000 reads so far
2011-05-19 18:04:03,386 - INFO - Processed 61800000 reads so far
2011-05-19 18:04:14,387 - INFO - Processed 61900000 reads so far
2011-05-19 18:04:30,739 - INFO - Processed 62000000 reads so far
2011-05-19 18:04:39,928 - INFO - Processed 62100000 reads so far
2011-05-19 18:04:50,007 - INFO - Processed 62200000 reads so far
2011-05-19 18:05:01,203 - INFO - Processed 62300000 reads so far
2011-05-19 18:05:11,545 - INFO - Processed 62400000 reads so far
2011-05-19 18:05:19,756 - INFO - Processed 62500000 reads so far
2011-05-19 18:05:26,988 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:182990184-203010184
2011-05-19 18:05:29,117 - INFO - Processed 62600000 reads so far
2011-05-19 18:05:43,902 - INFO - Processed 62700000 reads so far
2011-05-19 18:05:51,494 - INFO - Processed 62800000 reads so far
2011-05-19 18:06:01,392 - INFO - Processed 62900000 reads so far
2011-05-19 18:06:12,642 - INFO - Processed 63000000 reads so far
2011-05-19 18:06:19,313 - INFO - Processed 63100000 reads so far
2011-05-19 18:06:30,023 - INFO - Processed 63200000 reads so far
2011-05-19 18:06:41,575 - INFO - Processed 63300000 reads so far
2011-05-19 18:06:47,814 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1_random:0-20010000
2011-05-19 18:06:49,074 - INFO - Processed 63400000 reads so far
2011-05-19 18:06:55,132 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:2990037-23010037
2011-05-19 18:06:57,498 - INFO - Processed 63500000 reads so far
2011-05-19 18:07:05,325 - INFO - Processed 63600000 reads so far
2011-05-19 18:07:15,866 - INFO - Processed 63700000 reads so far
2011-05-19 18:07:25,058 - INFO - Processed 63800000 reads so far
2011-05-19 18:07:33,141 - INFO - Processed 63900000 reads so far
2011-05-19 18:07:41,870 - INFO - Processed 64000000 reads so far
2011-05-19 18:07:53,138 - INFO - Processed 64100000 reads so far
2011-05-19 18:08:02,557 - INFO - Processed 64200000 reads so far
2011-05-19 18:08:10,483 - INFO - Processed 64300000 reads so far
2011-05-19 18:08:20,257 - INFO - Processed 64400000 reads so far
2011-05-19 18:08:32,362 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:22990049-43010049
2011-05-19 18:08:32,843 - INFO - Processed 64500000 reads so far
2011-05-19 18:08:42,846 - INFO - Processed 64600000 reads so far
2011-05-19 18:08:53,607 - INFO - Processed 64700000 reads so far
2011-05-19 18:09:06,983 - INFO - Processed 64800000 reads so far
2011-05-19 18:09:19,020 - INFO - Processed 64900000 reads so far
2011-05-19 18:09:29,782 - INFO - Processed 65000000 reads so far
2011-05-19 18:09:43,825 - INFO - Processed 65100000 reads so far
2011-05-19 18:09:53,538 - INFO - Processed 65200000 reads so far
2011-05-19 18:10:04,173 - INFO - Processed 65300000 reads so far
2011-05-19 18:10:14,247 - INFO - Processed 65400000 reads so far
2011-05-19 18:10:22,422 - INFO - Processed 65500000 reads so far
2011-05-19 18:10:27,627 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:42990249-63010249
2011-05-19 18:10:31,111 - INFO - Processed 65600000 reads so far
2011-05-19 18:10:38,320 - INFO - Processed 65700000 reads so far
2011-05-19 18:10:46,916 - INFO - Processed 65800000 reads so far
2011-05-19 18:11:01,119 - INFO - Processed 65900000 reads so far
2011-05-19 18:11:12,923 - INFO - Processed 66000000 reads so far
2011-05-19 18:11:25,205 - INFO - Processed 66100000 reads so far
2011-05-19 18:11:39,529 - INFO - Processed 66200000 reads so far
2011-05-19 18:11:48,113 - INFO - Processed 66300000 reads so far
2011-05-19 18:11:58,693 - INFO - Processed 66400000 reads so far
2011-05-19 18:12:10,535 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:62990251-83010251
2011-05-19 18:12:11,167 - INFO - Processed 66500000 reads so far
2011-05-19 18:12:21,448 - INFO - Processed 66600000 reads so far
2011-05-19 18:12:30,430 - INFO - Processed 66700000 reads so far
2011-05-19 18:12:44,570 - INFO - Processed 66800000 reads so far
2011-05-19 18:12:54,191 - INFO - Processed 66900000 reads so far
2011-05-19 18:13:03,713 - INFO - Processed 67000000 reads so far
2011-05-19 18:13:15,842 - INFO - Processed 67100000 reads so far
2011-05-19 18:13:27,179 - INFO - Processed 67200000 reads so far
2011-05-19 18:13:38,353 - INFO - Processed 67300000 reads so far
2011-05-19 18:13:46,568 - INFO - Processed 67400000 reads so far
2011-05-19 18:13:57,339 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:82990255-103010255
2011-05-19 18:14:00,200 - INFO - Processed 67500000 reads so far
2011-05-19 18:14:10,629 - INFO - Processed 67600000 reads so far
2011-05-19 18:14:22,267 - INFO - Processed 67700000 reads so far
2011-05-19 18:14:35,040 - INFO - Processed 67800000 reads so far
2011-05-19 18:14:44,407 - INFO - Processed 67900000 reads so far
2011-05-19 18:14:55,110 - INFO - Processed 68000000 reads so far
2011-05-19 18:15:05,900 - INFO - Processed 68100000 reads so far
2011-05-19 18:15:16,307 - INFO - Processed 68200000 reads so far
2011-05-19 18:15:27,613 - INFO - Processed 68300000 reads so far
2011-05-19 18:15:34,679 - INFO - Processed 68400000 reads so far
2011-05-19 18:15:42,722 - INFO - Processed 68500000 reads so far
2011-05-19 18:15:50,451 - INFO - Processed 68600000 reads so far
2011-05-19 18:15:56,955 - INFO - Processed 68700000 reads so far
2011-05-19 18:16:05,730 - INFO - Processed 68800000 reads so far
2011-05-19 18:16:12,829 - INFO - Processed 68900000 reads so far
2011-05-19 18:16:21,850 - INFO - Processed 69000000 reads so far
2011-05-19 18:16:33,685 - INFO - Processed 69100000 reads so far
2011-05-19 18:16:41,985 - INFO - Processed 69200000 reads so far
2011-05-19 18:16:50,630 - INFO - Processed 69300000 reads so far
2011-05-19 18:16:59,090 - INFO - Processed 69400000 reads so far
2011-05-19 18:17:08,436 - INFO - Processed 69500000 reads so far
2011-05-19 18:17:19,842 - INFO - Processed 69600000 reads so far
2011-05-19 18:17:30,199 - INFO - Processed 69700000 reads so far
2011-05-19 18:17:39,073 - INFO - Processed 69800000 reads so far
2011-05-19 18:17:48,764 - INFO - Processed 69900000 reads so far
2011-05-19 18:17:56,446 - INFO - Processed 70000000 reads so far
2011-05-19 18:18:04,725 - INFO - Processed 70100000 reads so far
2011-05-19 18:22:47,593 - INFO - Processed 70200000 reads so far
2011-05-19 18:24:19,169 - INFO - Processed 70300000 reads so far
2011-05-19 18:24:25,307 - INFO - Processed 70400000 reads so far
2011-05-19 18:24:31,592 - INFO - Processed 70500000 reads so far
2011-05-19 18:24:38,500 - INFO - Processed 70600000 reads so far
2011-05-19 18:24:47,766 - INFO - Processed 70700000 reads so far
2011-05-19 18:24:54,517 - INFO - Processed 70800000 reads so far
2011-05-19 18:25:04,856 - INFO - Processed 70900000 reads so far
2011-05-19 18:25:14,016 - INFO - Processed 71000000 reads so far
2011-05-19 18:25:23,644 - INFO - Processed 71100000 reads so far
2011-05-19 18:25:32,993 - INFO - Processed 71200000 reads so far
2011-05-19 18:25:42,283 - INFO - Processed 71300000 reads so far
2011-05-19 18:25:52,338 - INFO - Processed 71400000 reads so far
2011-05-19 18:26:01,516 - INFO - Processed 71500000 reads so far
2011-05-19 18:26:10,670 - INFO - Processed 71600000 reads so far
2011-05-19 18:26:20,416 - INFO - Processed 71700000 reads so far
2011-05-19 18:26:29,936 - INFO - Processed 71800000 reads so far
2011-05-19 18:26:39,343 - INFO - Processed 71900000 reads so far
2011-05-19 18:26:46,514 - INFO - Processed 72000000 reads so far
2011-05-19 18:26:53,409 - INFO - Processed 72100000 reads so far
2011-05-19 18:27:03,006 - INFO - Processed 72200000 reads so far
2011-05-19 18:27:11,193 - INFO - Processed 72300000 reads so far
2011-05-19 18:27:21,803 - INFO - Processed 72400000 reads so far
2011-05-19 18:27:32,114 - INFO - Processed 72500000 reads so far
2011-05-19 18:27:41,823 - INFO - Processed 72600000 reads so far
2011-05-19 18:27:50,950 - INFO - Processed 72700000 reads so far
2011-05-19 18:28:00,473 - INFO - Processed 72800000 reads so far
2011-05-19 18:28:09,525 - INFO - Processed 72900000 reads so far
2011-05-19 18:28:17,957 - INFO - Processed 73000000 reads so far
2011-05-19 18:28:26,373 - INFO - Processed 73100000 reads so far
2011-05-19 18:28:34,888 - INFO - Processed 73200000 reads so far
2011-05-19 18:28:43,081 - INFO - Processed 73300000 reads so far
2011-05-19 18:28:53,052 - INFO - Processed 73400000 reads so far
2011-05-19 18:29:04,423 - INFO - Processed 73500000 reads so far
2011-05-19 18:29:12,394 - INFO - Processed 73600000 reads so far
2011-05-19 18:29:20,199 - INFO - Processed 73700000 reads so far
2011-05-19 18:29:31,946 - INFO - Processed 73800000 reads so far
2011-05-19 18:29:39,274 - INFO - Processed 73900000 reads so far
2011-05-19 18:29:46,288 - INFO - Processed 74000000 reads so far
2011-05-19 18:29:53,039 - INFO - Processed 74100000 reads so far
2011-05-19 18:30:00,382 - INFO - Processed 74200000 reads so far
2011-05-19 18:30:08,074 - INFO - Processed 74300000 reads so far
2011-05-19 18:30:17,951 - INFO - Processed 74400000 reads so far
2011-05-19 18:30:25,701 - INFO - Processed 74500000 reads so far
2011-05-19 18:30:36,346 - INFO - Processed 74600000 reads so far
2011-05-19 18:30:46,671 - INFO - Processed 74700000 reads so far
2011-05-19 18:30:55,576 - INFO - Processed 74800000 reads so far
2011-05-19 18:31:03,735 - INFO - Processed 74900000 reads so far
2011-05-19 18:31:14,683 - INFO - Processed 75000000 reads so far
2011-05-19 18:31:26,342 - INFO - Processed 75100000 reads so far
2011-05-19 18:31:36,378 - INFO - Processed 75200000 reads so far
2011-05-19 18:31:43,418 - INFO - Processed 75300000 reads so far
2011-05-19 18:31:54,487 - INFO - Processed 75400000 reads so far
2011-05-19 18:32:01,854 - INFO - Processed 75500000 reads so far
2011-05-19 18:32:11,890 - INFO - Processed 75600000 reads so far
2011-05-19 18:32:20,030 - INFO - Processed 75700000 reads so far
2011-05-19 18:32:28,022 - INFO - Processed 75800000 reads so far
2011-05-19 18:32:36,116 - INFO - Processed 75900000 reads so far
2011-05-19 18:32:44,464 - INFO - Processed 76000000 reads so far
2011-05-19 18:32:51,888 - INFO - Processed 76100000 reads so far
2011-05-19 18:33:01,068 - INFO - Processed 76200000 reads so far
2011-05-19 18:33:07,576 - INFO - Processed 76300000 reads so far
2011-05-19 18:33:15,806 - INFO - Processed 76400000 reads so far
2011-05-19 18:33:23,327 - INFO - Processed 76500000 reads so far
2011-05-19 18:33:30,897 - INFO - Processed 76600000 reads so far
2011-05-19 18:33:42,602 - INFO - Processed 76700000 reads so far
2011-05-19 18:33:51,527 - INFO - Processed 76800000 reads so far
2011-05-19 18:34:01,737 - INFO - Processed 76900000 reads so far
2011-05-19 18:34:12,721 - INFO - Processed 77000000 reads so far
2011-05-19 18:34:23,126 - INFO - Processed 77100000 reads so far
2011-05-19 18:34:34,323 - INFO - Processed 77200000 reads so far
2011-05-19 18:34:47,274 - INFO - Processed 77300000 reads so far
2011-05-19 18:34:57,043 - INFO - Processed 77400000 reads so far
2011-05-19 18:35:06,361 - INFO - Processed 77500000 reads so far
2011-05-19 18:35:16,353 - INFO - Processed 77600000 reads so far
2011-05-19 18:35:26,717 - INFO - Processed 77700000 reads so far
2011-05-19 18:35:36,037 - INFO - Processed 77800000 reads so far
2011-05-19 18:35:45,771 - INFO - Processed 77900000 reads so far
2011-05-19 18:35:57,784 - INFO - Processed 78000000 reads so far
2011-05-19 18:36:07,310 - INFO - Processed 78100000 reads so far
2011-05-19 18:36:16,055 - INFO - Processed 78200000 reads so far
2011-05-19 18:36:32,543 - INFO - Processed 78300000 reads so far
2011-05-19 18:36:43,962 - INFO - Processed 78400000 reads so far
2011-05-19 18:36:46,997 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:102990262-123010262
2011-05-19 18:36:56,057 - INFO - Processed 78500000 reads so far
2011-05-19 18:37:09,240 - INFO - Processed 78600000 reads so far
2011-05-19 18:37:22,151 - INFO - Processed 78700000 reads so far
2011-05-19 18:37:35,485 - INFO - Processed 78800000 reads so far
2011-05-19 18:37:45,113 - INFO - Processed 78900000 reads so far
2011-05-19 18:37:53,914 - INFO - Processed 79000000 reads so far
2011-05-19 18:38:03,219 - INFO - Processed 79100000 reads so far
2011-05-19 18:38:11,846 - INFO - Processed 79200000 reads so far
2011-05-19 18:38:25,163 - INFO - Processed 79300000 reads so far
2011-05-19 18:38:37,082 - INFO - Processed 79400000 reads so far
2011-05-19 18:38:38,772 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:122990297-143010297
2011-05-19 18:38:52,842 - INFO - Processed 79500000 reads so far
2011-05-19 18:39:02,813 - INFO - Processed 79600000 reads so far
2011-05-19 18:39:13,525 - INFO - Processed 79700000 reads so far
2011-05-19 18:39:27,225 - INFO - Processed 79800000 reads so far
2011-05-19 18:39:34,183 - INFO - Processed 79900000 reads so far
2011-05-19 18:39:43,913 - INFO - Processed 80000000 reads so far
2011-05-19 18:39:52,846 - INFO - Processed 80100000 reads so far
2011-05-19 18:40:02,372 - INFO - Processed 80200000 reads so far
2011-05-19 18:40:10,937 - INFO - Processed 80300000 reads so far
2011-05-19 18:40:19,260 - INFO - Processed 80400000 reads so far
2011-05-19 18:40:24,525 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:142990313-163010313
2011-05-19 18:40:27,815 - INFO - Processed 80500000 reads so far
2011-05-19 18:40:38,353 - INFO - Processed 80600000 reads so far
2011-05-19 18:40:48,249 - INFO - Processed 80700000 reads so far
2011-05-19 18:40:57,601 - INFO - Processed 80800000 reads so far
2011-05-19 18:41:06,048 - INFO - Processed 80900000 reads so far
2011-05-19 18:41:20,436 - INFO - Processed 81000000 reads so far
2011-05-19 18:41:29,941 - INFO - Processed 81100000 reads so far
2011-05-19 18:41:41,630 - INFO - Processed 81200000 reads so far
2011-05-19 18:41:52,140 - INFO - Processed 81300000 reads so far
2011-05-19 18:42:01,279 - INFO - Processed 81400000 reads so far
2011-05-19 18:42:09,728 - INFO - Processed 81500000 reads so far
2011-05-19 18:42:13,725 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:162990326-183010326
2011-05-19 18:42:18,789 - INFO - Processed 81600000 reads so far
2011-05-19 18:42:29,161 - INFO - Processed 81700000 reads so far
2011-05-19 18:42:36,796 - INFO - Processed 81800000 reads so far
2011-05-19 18:42:45,739 - INFO - Processed 81900000 reads so far
2011-05-19 18:42:54,468 - INFO - Processed 82000000 reads so far
2011-05-19 18:43:02,237 - INFO - Processed 82100000 reads so far
2011-05-19 18:43:10,086 - INFO - Processed 82200000 reads so far
2011-05-19 18:43:18,328 - INFO - Processed 82300000 reads so far
2011-05-19 18:43:26,788 - INFO - Processed 82400000 reads so far
2011-05-19 18:43:38,853 - INFO - Processed 82500000 reads so far
2011-05-19 18:43:48,796 - INFO - Processed 82600000 reads so far
2011-05-19 18:43:59,675 - INFO - Processed 82700000 reads so far
2011-05-19 18:44:05,510 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:2989999-23009999
2011-05-19 18:44:12,673 - INFO - Processed 82800000 reads so far
2011-05-19 18:44:25,529 - INFO - Processed 82900000 reads so far
2011-05-19 18:44:36,914 - INFO - Processed 83000000 reads so far
2011-05-19 18:44:52,041 - INFO - Processed 83100000 reads so far
2011-05-19 18:45:03,470 - INFO - Processed 83200000 reads so far
2011-05-19 18:45:16,315 - INFO - Processed 83300000 reads so far
2011-05-19 18:45:28,449 - INFO - Processed 83400000 reads so far
2011-05-19 18:45:40,167 - INFO - Processed 83500000 reads so far
2011-05-19 18:45:52,241 - INFO - Processed 83600000 reads so far
2011-05-19 18:45:56,796 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:22990009-43010009
2011-05-19 18:46:02,622 - INFO - Processed 83700000 reads so far
2011-05-19 18:46:11,212 - INFO - Processed 83800000 reads so far
2011-05-19 18:46:21,667 - INFO - Processed 83900000 reads so far
2011-05-19 18:46:35,769 - INFO - Processed 84000000 reads so far
2011-05-19 18:46:47,733 - INFO - Processed 84100000 reads so far
2011-05-19 18:47:01,240 - INFO - Processed 84200000 reads so far
2011-05-19 18:47:12,172 - INFO - Processed 84300000 reads so far
2011-05-19 18:47:23,941 - INFO - Processed 84400000 reads so far
2011-05-19 18:47:35,323 - INFO - Processed 84500000 reads so far
2011-05-19 18:47:48,732 - INFO - Processed 84600000 reads so far
2011-05-19 18:47:54,473 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:42990017-63010017
2011-05-19 18:47:59,913 - INFO - Processed 84700000 reads so far
2011-05-19 18:48:14,863 - INFO - Processed 84800000 reads so far
2011-05-19 18:48:26,152 - INFO - Processed 84900000 reads so far
2011-05-19 18:48:38,623 - INFO - Processed 85000000 reads so far
2011-05-19 18:48:49,576 - INFO - Processed 85100000 reads so far
2011-05-19 18:48:58,418 - INFO - Processed 85200000 reads so far
2011-05-19 18:49:07,886 - INFO - Processed 85300000 reads so far
2011-05-19 18:49:16,166 - INFO - Processed 85400000 reads so far
2011-05-19 18:49:27,439 - INFO - Processed 85500000 reads so far
2011-05-19 18:49:34,647 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:62990050-83010050
2011-05-19 18:49:38,972 - INFO - Processed 85600000 reads so far
2011-05-19 18:49:51,052 - INFO - Processed 85700000 reads so far
2011-05-19 18:50:05,644 - INFO - Processed 85800000 reads so far
2011-05-19 18:50:16,258 - INFO - Processed 85900000 reads so far
2011-05-19 18:50:24,705 - INFO - Processed 86000000 reads so far
2011-05-19 18:50:36,693 - INFO - Processed 86100000 reads so far
2011-05-19 18:50:46,278 - INFO - Processed 86200000 reads so far
2011-05-19 18:50:55,137 - INFO - Processed 86300000 reads so far
2011-05-19 18:51:06,478 - INFO - Processed 86400000 reads so far
2011-05-19 18:51:13,506 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:82990051-103010051
2011-05-19 18:51:15,823 - INFO - Processed 86500000 reads so far
2011-05-19 18:51:24,849 - INFO - Processed 86600000 reads so far
2011-05-19 18:51:34,982 - INFO - Processed 86700000 reads so far
2011-05-19 18:51:45,146 - INFO - Processed 86800000 reads so far
2011-05-19 18:51:57,020 - INFO - Processed 86900000 reads so far
2011-05-19 18:52:06,753 - INFO - Processed 87000000 reads so far
2011-05-19 18:52:18,831 - INFO - Processed 87100000 reads so far
2011-05-19 18:52:29,340 - INFO - Processed 87200000 reads so far
2011-05-19 18:52:37,599 - INFO - Processed 87300000 reads so far
2011-05-19 18:52:45,888 - INFO - Processed 87400000 reads so far
2011-05-19 18:52:55,760 - INFO - Processed 87500000 reads so far
2011-05-19 18:52:58,929 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:102990090-123010090
2011-05-19 18:53:04,327 - INFO - Processed 87600000 reads so far
2011-05-19 18:53:12,966 - INFO - Processed 87700000 reads so far
2011-05-19 18:53:22,078 - INFO - Processed 87800000 reads so far
2011-05-19 18:53:38,850 - INFO - Processed 87900000 reads so far
2011-05-19 18:53:50,377 - INFO - Processed 88000000 reads so far
2011-05-19 18:54:00,222 - INFO - Processed 88100000 reads so far
2011-05-19 18:54:11,660 - INFO - Processed 88200000 reads so far
2011-05-19 18:54:59,121 - INFO - Processed 88300000 reads so far
2011-05-19 18:55:08,686 - INFO - Processed 88400000 reads so far
2011-05-19 18:55:17,715 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:122990096-143010096
2011-05-19 18:55:17,914 - INFO - Processed 88500000 reads so far
2011-05-19 18:55:29,080 - INFO - Processed 88600000 reads so far
2011-05-19 18:55:39,631 - INFO - Processed 88700000 reads so far
2011-05-19 18:55:50,890 - INFO - Processed 88800000 reads so far
2011-05-19 18:56:03,070 - INFO - Processed 88900000 reads so far
2011-05-19 18:56:14,435 - INFO - Processed 89000000 reads so far
2011-05-19 18:56:27,462 - INFO - Processed 89100000 reads so far
2011-05-19 18:56:39,411 - INFO - Processed 89200000 reads so far
2011-05-19 18:56:52,501 - INFO - Processed 89300000 reads so far
2011-05-19 18:57:03,773 - INFO - Processed 89400000 reads so far
2011-05-19 18:57:13,133 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:142990122-163010122
2011-05-19 18:57:15,811 - INFO - Processed 89500000 reads so far
2011-05-19 18:57:26,260 - INFO - Processed 89600000 reads so far
2011-05-19 18:57:37,984 - INFO - Processed 89700000 reads so far
2011-05-19 18:57:51,153 - INFO - Processed 89800000 reads so far
2011-05-19 18:58:00,130 - INFO - Processed 89900000 reads so far
2011-05-19 18:58:09,891 - INFO - Processed 90000000 reads so far
2011-05-19 18:58:19,669 - INFO - Processed 90100000 reads so far
2011-05-19 18:58:31,174 - INFO - Processed 90200000 reads so far
2011-05-19 18:58:41,839 - INFO - Processed 90300000 reads so far
2011-05-19 18:58:46,847 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3_random:0-20010003
2011-05-19 18:58:46,938 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:2989981-23009981
2011-05-19 18:58:50,778 - INFO - Processed 90400000 reads so far
2011-05-19 18:59:01,057 - INFO - Processed 90500000 reads so far
2011-05-19 18:59:13,898 - INFO - Processed 90600000 reads so far
2011-05-19 18:59:21,755 - INFO - Processed 90700000 reads so far
2011-05-19 18:59:30,916 - INFO - Processed 90800000 reads so far
2011-05-19 18:59:42,072 - INFO - Processed 90900000 reads so far
2011-05-19 18:59:51,877 - INFO - Processed 91000000 reads so far
2011-05-19 19:00:00,408 - INFO - Processed 91100000 reads so far
2011-05-19 19:00:10,447 - INFO - Processed 91200000 reads so far
2011-05-19 19:00:21,573 - INFO - Processed 91300000 reads so far
2011-05-19 19:00:24,768 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:22989986-43009986
2011-05-19 19:00:30,993 - INFO - Processed 91400000 reads so far
2011-05-19 19:00:41,927 - INFO - Processed 91500000 reads so far
2011-05-19 19:00:51,482 - INFO - Processed 91600000 reads so far
2011-05-19 19:01:01,532 - INFO - Processed 91700000 reads so far
2011-05-19 19:01:14,987 - INFO - Processed 91800000 reads so far
2011-05-19 19:01:25,673 - INFO - Processed 91900000 reads so far
2011-05-19 19:01:38,695 - INFO - Processed 92000000 reads so far
2011-05-19 19:01:49,002 - INFO - Processed 92100000 reads so far
2011-05-19 19:02:00,272 - INFO - Processed 92200000 reads so far
2011-05-19 19:02:03,348 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:42990031-63010031
2011-05-19 19:02:14,164 - INFO - Processed 92300000 reads so far
2011-05-19 19:02:23,711 - INFO - Processed 92400000 reads so far
2011-05-19 19:02:33,759 - INFO - Processed 92500000 reads so far
2011-05-19 19:02:41,956 - INFO - Processed 92600000 reads so far
2011-05-19 19:02:54,002 - INFO - Processed 92700000 reads so far
2011-05-19 19:03:06,564 - INFO - Processed 92800000 reads so far
2011-05-19 19:03:15,302 - INFO - Processed 92900000 reads so far
2011-05-19 19:03:25,552 - INFO - Processed 93000000 reads so far
2011-05-19 19:03:35,364 - INFO - Processed 93100000 reads so far
2011-05-19 19:03:45,466 - INFO - Processed 93200000 reads so far
2011-05-19 19:03:53,347 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:62990040-83010040
2011-05-19 19:03:55,699 - INFO - Processed 93300000 reads so far
2011-05-19 19:04:04,532 - INFO - Processed 93400000 reads so far
2011-05-19 19:04:14,158 - INFO - Processed 93500000 reads so far
2011-05-19 19:04:24,167 - INFO - Processed 93600000 reads so far
2011-05-19 19:04:33,117 - INFO - Processed 93700000 reads so far
2011-05-19 19:04:45,218 - INFO - Processed 93800000 reads so far
2011-05-19 19:04:57,069 - INFO - Processed 93900000 reads so far
2011-05-19 19:05:06,538 - INFO - Processed 94000000 reads so far
2011-05-19 19:05:20,102 - INFO - Processed 94100000 reads so far
2011-05-19 19:05:30,888 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:82990045-103010045
2011-05-19 19:05:32,124 - INFO - Processed 94200000 reads so far
2011-05-19 19:05:42,427 - INFO - Processed 94300000 reads so far
2011-05-19 19:05:52,145 - INFO - Processed 94400000 reads so far
2011-05-19 19:06:02,764 - INFO - Processed 94500000 reads so far
2011-05-19 19:06:11,413 - INFO - Processed 94600000 reads so far
2011-05-19 19:06:22,730 - INFO - Processed 94700000 reads so far
2011-05-19 19:06:34,732 - INFO - Processed 94800000 reads so far
2011-05-19 19:06:42,815 - INFO - Processed 94900000 reads so far
2011-05-19 19:06:51,946 - INFO - Processed 95000000 reads so far
2011-05-19 19:07:01,561 - INFO - Processed 95100000 reads so far
2011-05-19 19:07:10,558 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:102990068-123010068
2011-05-19 19:07:12,633 - INFO - Processed 95200000 reads so far
2011-05-19 19:07:23,446 - INFO - Processed 95300000 reads so far
2011-05-19 19:07:35,867 - INFO - Processed 95400000 reads so far
2011-05-19 19:07:46,056 - INFO - Processed 95500000 reads so far
2011-05-19 19:07:57,636 - INFO - Processed 95600000 reads so far
2011-05-19 19:08:11,412 - INFO - Processed 95700000 reads so far
2011-05-19 19:08:21,628 - INFO - Processed 95800000 reads so far
2011-05-19 19:08:31,474 - INFO - Processed 95900000 reads so far
2011-05-19 19:08:42,400 - INFO - Processed 96000000 reads so far
2011-05-19 19:08:54,485 - INFO - Processed 96100000 reads so far
2011-05-19 19:09:02,481 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:122990072-143010072
2011-05-19 19:09:03,968 - INFO - Processed 96200000 reads so far
2011-05-19 19:09:12,626 - INFO - Processed 96300000 reads so far
2011-05-19 19:09:22,632 - INFO - Processed 96400000 reads so far
2011-05-19 19:09:32,835 - INFO - Processed 96500000 reads so far
2011-05-19 19:09:42,793 - INFO - Processed 96600000 reads so far
2011-05-19 19:09:51,132 - INFO - Processed 96700000 reads so far
2011-05-19 19:10:01,961 - INFO - Processed 96800000 reads so far
2011-05-19 19:10:10,882 - INFO - Processed 96900000 reads so far
2011-05-19 19:10:50,304 - INFO - Processed 97000000 reads so far
2011-05-19 19:11:28,466 - INFO - Processed 97100000 reads so far
2011-05-19 19:11:43,899 - INFO - Processed 97200000 reads so far
2011-05-19 19:11:59,281 - INFO - Processed 97300000 reads so far
2011-05-19 19:12:03,581 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:142990136-163010136
2011-05-19 19:12:11,348 - INFO - Processed 97400000 reads so far
2011-05-19 19:12:23,559 - INFO - Processed 97500000 reads so far
2011-05-19 19:12:34,343 - INFO - Processed 97600000 reads so far
2011-05-19 19:12:46,783 - INFO - Processed 97700000 reads so far
2011-05-19 19:12:58,099 - INFO - Processed 97800000 reads so far
2011-05-19 19:13:09,165 - INFO - Processed 97900000 reads so far
2011-05-19 19:13:19,943 - INFO - Processed 98000000 reads so far
2011-05-19 19:13:31,681 - INFO - Processed 98100000 reads so far
2011-05-19 19:13:32,811 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4_random:0-20010041
2011-05-19 19:13:33,466 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:2990067-23010067
2011-05-19 19:13:45,029 - INFO - Processed 98200000 reads so far
2011-05-19 19:13:58,685 - INFO - Processed 98300000 reads so far
2011-05-19 19:14:10,380 - INFO - Processed 98400000 reads so far
2011-05-19 19:14:21,991 - INFO - Processed 98500000 reads so far
2011-05-19 19:14:32,765 - INFO - Processed 98600000 reads so far
2011-05-19 19:14:42,150 - INFO - Processed 98700000 reads so far
2011-05-19 19:14:52,957 - INFO - Processed 98800000 reads so far
2011-05-19 19:15:01,639 - INFO - Processed 98900000 reads so far
2011-05-19 19:15:11,056 - INFO - Processed 99000000 reads so far
2011-05-19 19:15:18,518 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:22990524-43010524
2011-05-19 19:15:21,225 - INFO - Processed 99100000 reads so far
2011-05-19 19:15:30,149 - INFO - Processed 99200000 reads so far
2011-05-19 19:15:42,397 - INFO - Processed 99300000 reads so far
2011-05-19 19:15:52,590 - INFO - Processed 99400000 reads so far
2011-05-19 19:16:02,797 - INFO - Processed 99500000 reads so far
2011-05-19 19:16:13,128 - INFO - Processed 99600000 reads so far
2011-05-19 19:16:26,707 - INFO - Processed 99700000 reads so far
2011-05-19 19:16:40,767 - INFO - Processed 99800000 reads so far
2011-05-19 19:16:53,523 - INFO - Processed 99900000 reads so far
2011-05-19 19:17:02,853 - INFO - Processed 100000000 reads so far
2011-05-19 19:17:15,517 - INFO - Processed 100100000 reads so far
2011-05-19 19:17:25,739 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:42990604-63010604
2011-05-19 19:17:29,094 - INFO - Processed 100200000 reads so far
2011-05-19 19:17:40,367 - INFO - Processed 100300000 reads so far
2011-05-19 19:17:51,949 - INFO - Processed 100400000 reads so far
2011-05-19 19:18:04,402 - INFO - Processed 100500000 reads so far
2011-05-19 19:18:16,890 - INFO - Processed 100600000 reads so far
2011-05-19 19:18:29,232 - INFO - Processed 100700000 reads so far
2011-05-19 19:18:41,573 - INFO - Processed 100800000 reads so far
2011-05-19 19:18:51,638 - INFO - Processed 100900000 reads so far
2011-05-19 19:18:59,366 - INFO - Processed 101000000 reads so far
2011-05-19 19:19:06,144 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:62990674-83010674
2011-05-19 19:19:09,379 - INFO - Processed 101100000 reads so far
2011-05-19 19:19:17,738 - INFO - Processed 101200000 reads so far
2011-05-19 19:19:25,176 - INFO - Processed 101300000 reads so far
2011-05-19 19:19:35,819 - INFO - Processed 101400000 reads so far
2011-05-19 19:19:49,154 - INFO - Processed 101500000 reads so far
2011-05-19 19:20:05,761 - INFO - Processed 101600000 reads so far
2011-05-19 19:20:17,442 - INFO - Processed 101700000 reads so far
2011-05-19 19:20:29,228 - INFO - Processed 101800000 reads so far
2011-05-19 19:20:40,920 - INFO - Processed 101900000 reads so far
2011-05-19 19:20:54,043 - INFO - Processed 102000000 reads so far
2011-05-19 19:20:56,662 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:82990725-103010725
2011-05-19 19:21:05,881 - INFO - Processed 102100000 reads so far
2011-05-19 19:21:17,318 - INFO - Processed 102200000 reads so far
2011-05-19 19:21:29,503 - INFO - Processed 102300000 reads so far
2011-05-19 19:21:42,806 - INFO - Processed 102400000 reads so far
2011-05-19 19:21:53,978 - INFO - Processed 102500000 reads so far
2011-05-19 19:22:07,173 - INFO - Processed 102600000 reads so far
2011-05-19 19:22:18,360 - INFO - Processed 102700000 reads so far
2011-05-19 19:22:28,964 - INFO - Processed 102800000 reads so far
2011-05-19 19:22:41,330 - INFO - Processed 102900000 reads so far
2011-05-19 19:22:47,351 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:102990734-123010734
2011-05-19 19:22:50,116 - INFO - Processed 103000000 reads so far
2011-05-19 19:22:59,854 - INFO - Processed 103100000 reads so far
2011-05-19 19:23:08,376 - INFO - Processed 103200000 reads so far
2011-05-19 19:23:20,624 - INFO - Processed 103300000 reads so far
2011-05-19 19:23:31,995 - INFO - Processed 103400000 reads so far
2011-05-19 19:23:39,644 - INFO - Processed 103500000 reads so far
2011-05-19 19:23:49,132 - INFO - Processed 103600000 reads so far
2011-05-19 19:23:58,891 - INFO - Processed 103700000 reads so far
2011-05-19 19:24:08,668 - INFO - Processed 103800000 reads so far
2011-05-19 19:24:17,887 - INFO - Processed 103900000 reads so far
2011-05-19 19:24:29,533 - INFO - Processed 104000000 reads so far
2011-05-19 19:24:38,265 - INFO - Processed 104100000 reads so far
2011-05-19 19:24:43,157 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:122990746-143010746
2011-05-19 19:24:49,060 - INFO - Processed 104200000 reads so far
2011-05-19 19:24:58,392 - INFO - Processed 104300000 reads so far
2011-05-19 19:25:08,771 - INFO - Processed 104400000 reads so far
2011-05-19 19:25:17,831 - INFO - Processed 104500000 reads so far
2011-05-19 19:25:28,003 - INFO - Processed 104600000 reads so far
2011-05-19 19:25:38,453 - INFO - Processed 104700000 reads so far
2011-05-19 19:25:52,258 - INFO - Processed 104800000 reads so far
2011-05-19 19:26:02,434 - INFO - Processed 104900000 reads so far
2011-05-19 19:26:13,446 - INFO - Processed 105000000 reads so far
2011-05-19 19:26:24,535 - INFO - Processed 105100000 reads so far
2011-05-19 19:26:33,887 - INFO - Processed 105200000 reads so far
2011-05-19 19:26:42,162 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:142990753-163010753
2011-05-19 19:26:42,379 - INFO - Processed 105300000 reads so far
2011-05-19 19:26:56,061 - INFO - Processed 105400000 reads so far
2011-05-19 19:27:06,875 - INFO - Processed 105500000 reads so far
2011-05-19 19:27:17,852 - INFO - Processed 105600000 reads so far
2011-05-19 19:27:31,741 - INFO - Processed 105700000 reads so far
2011-05-19 19:27:43,065 - INFO - Processed 105800000 reads so far
2011-05-19 19:27:47,206 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5_random:0-20010092
2011-05-19 19:27:48,043 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:2989998-23009998
2011-05-19 19:27:53,827 - INFO - Processed 105900000 reads so far
2011-05-19 19:28:07,953 - INFO - Processed 106000000 reads so far
2011-05-19 19:28:16,655 - INFO - Processed 106100000 reads so far
2011-05-19 19:28:29,170 - INFO - Processed 106200000 reads so far
2011-05-19 19:28:41,691 - INFO - Processed 106300000 reads so far
2011-05-19 19:28:50,468 - INFO - Processed 106400000 reads so far
2011-05-19 19:28:59,642 - INFO - Processed 106500000 reads so far
2011-05-19 19:29:13,920 - INFO - Processed 106600000 reads so far
2011-05-19 19:29:24,294 - INFO - Processed 106700000 reads so far
2011-05-19 19:29:30,008 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:22990000-43010000
2011-05-19 19:29:35,156 - INFO - Processed 106800000 reads so far
2011-05-19 19:29:47,670 - INFO - Processed 106900000 reads so far
2011-05-19 19:30:00,395 - INFO - Processed 107000000 reads so far
2011-05-19 19:30:10,978 - INFO - Processed 107100000 reads so far
2011-05-19 19:30:24,378 - INFO - Processed 107200000 reads so far
2011-05-19 19:30:34,833 - INFO - Processed 107300000 reads so far
2011-05-19 19:30:46,443 - INFO - Processed 107400000 reads so far
2011-05-19 19:31:00,003 - INFO - Processed 107500000 reads so far
2011-05-19 19:31:10,721 - INFO - Processed 107600000 reads so far
2011-05-19 19:31:21,424 - INFO - Processed 107700000 reads so far
2011-05-19 19:31:34,531 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:42990016-63010016
2011-05-19 19:31:38,614 - INFO - Processed 107800000 reads so far
2011-05-19 19:31:51,684 - INFO - Processed 107900000 reads so far
2011-05-19 19:32:02,814 - INFO - Processed 108000000 reads so far
2011-05-19 19:32:19,604 - INFO - Processed 108100000 reads so far
2011-05-19 19:32:32,719 - INFO - Processed 108200000 reads so far
2011-05-19 19:32:49,495 - INFO - Processed 108300000 reads so far
2011-05-19 19:33:01,894 - INFO - Processed 108400000 reads so far
2011-05-19 19:33:13,478 - INFO - Processed 108500000 reads so far
2011-05-19 19:33:27,034 - INFO - Processed 108600000 reads so far
2011-05-19 19:33:38,011 - INFO - Processed 108700000 reads so far
2011-05-19 19:33:47,839 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:62990093-83010093
2011-05-19 19:33:49,009 - INFO - Processed 108800000 reads so far
2011-05-19 19:34:00,438 - INFO - Processed 108900000 reads so far
2011-05-19 19:34:11,467 - INFO - Processed 109000000 reads so far
2011-05-19 19:34:23,650 - INFO - Processed 109100000 reads so far
2011-05-19 19:34:35,061 - INFO - Processed 109200000 reads so far
2011-05-19 19:34:46,015 - INFO - Processed 109300000 reads so far
2011-05-19 19:34:57,482 - INFO - Processed 109400000 reads so far
2011-05-19 19:35:08,560 - INFO - Processed 109500000 reads so far
2011-05-19 19:35:19,062 - INFO - Processed 109600000 reads so far
2011-05-19 19:35:30,077 - INFO - Processed 109700000 reads so far
2011-05-19 19:35:30,345 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:82990097-103010097
2011-05-19 19:35:39,960 - INFO - Processed 109800000 reads so far
2011-05-19 19:35:47,223 - INFO - Processed 109900000 reads so far
2011-05-19 19:35:57,125 - INFO - Processed 110000000 reads so far
2011-05-19 19:36:06,131 - INFO - Processed 110100000 reads so far
2011-05-19 19:36:15,197 - INFO - Processed 110200000 reads so far
2011-05-19 19:36:25,270 - INFO - Processed 110300000 reads so far
2011-05-19 19:36:35,850 - INFO - Processed 110400000 reads so far
2011-05-19 19:36:45,769 - INFO - Processed 110500000 reads so far
2011-05-19 19:36:55,527 - INFO - Processed 110600000 reads so far
2011-05-19 19:37:04,149 - INFO - Processed 110700000 reads so far
2011-05-19 19:37:14,769 - INFO - Processed 110800000 reads so far
2011-05-19 19:37:17,854 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:102990100-123010100
2011-05-19 19:37:25,152 - INFO - Processed 110900000 reads so far
2011-05-19 19:37:32,667 - INFO - Processed 111000000 reads so far
2011-05-19 19:37:40,650 - INFO - Processed 111100000 reads so far
2011-05-19 19:37:49,183 - INFO - Processed 111200000 reads so far
2011-05-19 19:37:59,152 - INFO - Processed 111300000 reads so far
2011-05-19 19:38:08,368 - INFO - Processed 111400000 reads so far
2011-05-19 19:38:19,384 - INFO - Processed 111500000 reads so far
2011-05-19 19:38:27,780 - INFO - Processed 111600000 reads so far
2011-05-19 19:38:38,257 - INFO - Processed 111700000 reads so far
2011-05-19 19:38:47,586 - INFO - Processed 111800000 reads so far
2011-05-19 19:38:56,159 - INFO - Processed 111900000 reads so far
2011-05-19 19:39:07,157 - INFO - Processed 112000000 reads so far
2011-05-19 19:39:18,520 - INFO - Processed 112100000 reads so far
2011-05-19 19:39:32,177 - INFO - Processed 112200000 reads so far
2011-05-19 19:39:43,549 - INFO - Processed 112300000 reads so far
2011-05-19 19:39:54,814 - INFO - Processed 112400000 reads so far
2011-05-19 19:40:34,711 - INFO - Processed 112500000 reads so far
2011-05-19 19:40:46,346 - INFO - Processed 112600000 reads so far
2011-05-19 19:40:57,793 - INFO - Processed 112700000 reads so far
2011-05-19 19:41:09,855 - INFO - Processed 112800000 reads so far
2011-05-19 19:41:20,057 - INFO - Processed 112900000 reads so far
2011-05-19 19:41:26,146 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:122990101-143010101
2011-05-19 19:41:32,204 - INFO - Processed 113000000 reads so far
2011-05-19 19:41:46,007 - INFO - Processed 113100000 reads so far
2011-05-19 19:41:57,049 - INFO - Processed 113200000 reads so far
2011-05-19 19:42:07,007 - INFO - Processed 113300000 reads so far
2011-05-19 19:42:19,081 - INFO - Processed 113400000 reads so far
2011-05-19 19:42:33,501 - INFO - Processed 113500000 reads so far
2011-05-19 19:42:49,375 - INFO - Processed 113600000 reads so far
2011-05-19 19:42:59,420 - INFO - Processed 113700000 reads so far
2011-05-19 19:43:08,076 - INFO - Processed 113800000 reads so far
2011-05-19 19:43:14,892 - INFO - Processed 113900000 reads so far
2011-05-19 19:43:25,370 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:142990104-163010104
2011-05-19 19:43:25,927 - INFO - Processed 114000000 reads so far
2011-05-19 19:43:35,338 - INFO - Processed 114100000 reads so far
2011-05-19 19:43:45,247 - INFO - Processed 114200000 reads so far
2011-05-19 19:43:56,350 - INFO - Processed 114300000 reads so far
2011-05-19 19:44:02,177 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:2990034-23010034
2011-05-19 19:44:06,945 - INFO - Processed 114400000 reads so far
2011-05-19 19:44:16,553 - INFO - Processed 114500000 reads so far
2011-05-19 19:44:24,388 - INFO - Processed 114600000 reads so far
2011-05-19 19:44:34,811 - INFO - Processed 114700000 reads so far
2011-05-19 19:44:45,704 - INFO - Processed 114800000 reads so far
2011-05-19 19:44:52,621 - INFO - Processed 114900000 reads so far
2011-05-19 19:45:02,848 - INFO - Processed 115000000 reads so far
2011-05-19 19:45:17,103 - INFO - Processed 115100000 reads so far
2011-05-19 19:45:27,158 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:22990067-43010067
2011-05-19 19:45:27,545 - INFO - Processed 115200000 reads so far
2011-05-19 19:45:38,964 - INFO - Processed 115300000 reads so far
2011-05-19 19:45:50,883 - INFO - Processed 115400000 reads so far
2011-05-19 19:46:03,053 - INFO - Processed 115500000 reads so far
2011-05-19 19:46:16,567 - INFO - Processed 115600000 reads so far
2011-05-19 19:46:29,033 - INFO - Processed 115700000 reads so far
2011-05-19 19:46:39,472 - INFO - Processed 115800000 reads so far
2011-05-19 19:46:49,685 - INFO - Processed 115900000 reads so far
2011-05-19 19:46:58,742 - INFO - Processed 116000000 reads so far
2011-05-19 19:47:02,822 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:46346779-66366779
2011-05-19 19:47:07,260 - INFO - Processed 116100000 reads so far
2011-05-19 19:47:17,167 - INFO - Processed 116200000 reads so far
2011-05-19 19:47:29,224 - INFO - Processed 116300000 reads so far
2011-05-19 19:47:37,974 - INFO - Processed 116400000 reads so far
2011-05-19 19:47:46,904 - INFO - Processed 116500000 reads so far
2011-05-19 19:47:55,372 - INFO - Processed 116600000 reads so far
2011-05-19 19:48:05,369 - INFO - Processed 116700000 reads so far
2011-05-19 19:48:16,778 - INFO - Processed 116800000 reads so far
2011-05-19 19:48:26,165 - INFO - Processed 116900000 reads so far
2011-05-19 19:48:36,195 - INFO - Processed 117000000 reads so far
2011-05-19 19:48:42,674 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:66346790-86366790
2011-05-19 19:48:46,430 - INFO - Processed 117100000 reads so far
2011-05-19 19:48:57,645 - INFO - Processed 117200000 reads so far
2011-05-19 19:49:09,251 - INFO - Processed 117300000 reads so far
2011-05-19 19:49:17,646 - INFO - Processed 117400000 reads so far
2011-05-19 19:49:26,462 - INFO - Processed 117500000 reads so far
2011-05-19 19:49:38,365 - INFO - Processed 117600000 reads so far
2011-05-19 19:49:50,885 - INFO - Processed 117700000 reads so far
2011-05-19 19:50:01,270 - INFO - Processed 117800000 reads so far
2011-05-19 19:50:11,405 - INFO - Processed 117900000 reads so far
2011-05-19 19:50:20,177 - INFO - Processed 118000000 reads so far
2011-05-19 19:50:30,867 - INFO - Processed 118100000 reads so far
2011-05-19 19:50:33,738 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:86346822-106366822
2011-05-19 19:50:39,730 - INFO - Processed 118200000 reads so far
2011-05-19 19:50:50,499 - INFO - Processed 118300000 reads so far
2011-05-19 19:51:02,866 - INFO - Processed 118400000 reads so far
2011-05-19 19:51:12,429 - INFO - Processed 118500000 reads so far
2011-05-19 19:51:24,072 - INFO - Processed 118600000 reads so far
2011-05-19 19:51:36,734 - INFO - Processed 118700000 reads so far
2011-05-19 19:51:50,778 - INFO - Processed 118800000 reads so far
2011-05-19 19:52:03,836 - INFO - Processed 118900000 reads so far
2011-05-19 19:52:15,994 - INFO - Processed 119000000 reads so far
2011-05-19 19:52:27,442 - INFO - Processed 119100000 reads so far
2011-05-19 19:52:29,890 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:106346823-126366823
2011-05-19 19:52:39,509 - INFO - Processed 119200000 reads so far
2011-05-19 19:52:50,891 - INFO - Processed 119300000 reads so far
2011-05-19 19:53:03,614 - INFO - Processed 119400000 reads so far
2011-05-19 19:53:18,384 - INFO - Processed 119500000 reads so far
2011-05-19 19:53:30,675 - INFO - Processed 119600000 reads so far
2011-05-19 19:53:44,154 - INFO - Processed 119700000 reads so far
2011-05-19 19:53:55,238 - INFO - Processed 119800000 reads so far
2011-05-19 19:54:07,169 - INFO - Processed 119900000 reads so far
2011-05-19 19:54:18,290 - INFO - Processed 120000000 reads so far
2011-05-19 19:54:32,505 - INFO - Processed 120100000 reads so far
2011-05-19 19:54:43,471 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:126346837-146366837
2011-05-19 19:54:43,785 - INFO - Processed 120200000 reads so far
2011-05-19 19:54:57,431 - INFO - Processed 120300000 reads so far
2011-05-19 19:55:08,816 - INFO - Processed 120400000 reads so far
2011-05-19 19:55:19,887 - INFO - Processed 120500000 reads so far
2011-05-19 19:55:31,173 - INFO - Processed 120600000 reads so far
2011-05-19 19:55:43,880 - INFO - Processed 120700000 reads so far
2011-05-19 19:55:55,262 - INFO - Processed 120800000 reads so far
2011-05-19 19:56:08,809 - INFO - Processed 120900000 reads so far
2011-05-19 19:56:20,323 - INFO - Processed 121000000 reads so far
2011-05-19 19:56:31,851 - INFO - Processed 121100000 reads so far
2011-05-19 19:56:43,413 - INFO - Processed 121200000 reads so far
2011-05-19 19:56:50,873 - INFO - Processed 121300000 reads so far
2011-05-19 19:56:55,420 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:146346847-166366847
2011-05-19 19:56:58,765 - INFO - Processed 121400000 reads so far
2011-05-19 19:57:07,372 - INFO - Processed 121500000 reads so far
2011-05-19 19:57:19,921 - INFO - Processed 121600000 reads so far
2011-05-19 19:57:30,379 - INFO - Processed 121700000 reads so far
2011-05-19 19:57:34,660 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7_random:0-20010079
2011-05-19 19:57:36,191 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:2990059-23010059
2011-05-19 19:57:42,124 - INFO - Processed 121800000 reads so far
2011-05-19 19:57:52,310 - INFO - Processed 121900000 reads so far
2011-05-19 19:58:03,977 - INFO - Processed 122000000 reads so far
2011-05-19 19:58:15,353 - INFO - Processed 122100000 reads so far
2011-05-19 19:58:27,353 - INFO - Processed 122200000 reads so far
2011-05-19 19:58:41,955 - INFO - Processed 122300000 reads so far
2011-05-19 19:58:55,763 - INFO - Processed 122400000 reads so far
2011-05-19 19:59:05,540 - INFO - Processed 122500000 reads so far
2011-05-19 19:59:15,171 - INFO - Processed 122600000 reads so far
2011-05-19 19:59:24,738 - INFO - Processed 122700000 reads so far
2011-05-19 19:59:34,562 - INFO - Processed 122800000 reads so far
2011-05-19 19:59:44,164 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:22990091-43010091
2011-05-19 19:59:47,584 - INFO - Processed 122900000 reads so far
2011-05-19 19:59:56,461 - INFO - Processed 123000000 reads so far
2011-05-19 20:00:06,188 - INFO - Processed 123100000 reads so far
2011-05-19 20:00:13,607 - INFO - Processed 123200000 reads so far
2011-05-19 20:00:24,843 - INFO - Processed 123300000 reads so far
2011-05-19 20:00:39,399 - INFO - Processed 123400000 reads so far
2011-05-19 20:00:51,701 - INFO - Processed 123500000 reads so far
2011-05-19 20:01:02,961 - INFO - Processed 123600000 reads so far
2011-05-19 20:01:14,900 - INFO - Processed 123700000 reads so far
2011-05-19 20:01:28,644 - INFO - Processed 123800000 reads so far
2011-05-19 20:01:41,160 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:42990096-63010096
2011-05-19 20:01:47,575 - INFO - Processed 123900000 reads so far
2011-05-19 20:01:58,060 - INFO - Processed 124000000 reads so far
2011-05-19 20:02:11,073 - INFO - Processed 124100000 reads so far
2011-05-19 20:02:22,370 - INFO - Processed 124200000 reads so far
2011-05-19 20:02:37,255 - INFO - Processed 124300000 reads so far
2011-05-19 20:02:48,956 - INFO - Processed 124400000 reads so far
2011-05-19 20:03:00,870 - INFO - Processed 124500000 reads so far
2011-05-19 20:03:14,401 - INFO - Processed 124600000 reads so far
2011-05-19 20:03:30,298 - INFO - Processed 124700000 reads so far
2011-05-19 20:03:31,006 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:62990109-83010109
2011-05-19 20:03:43,360 - INFO - Processed 124800000 reads so far
2011-05-19 20:03:57,481 - INFO - Processed 124900000 reads so far
2011-05-19 20:04:09,903 - INFO - Processed 125000000 reads so far
2011-05-19 20:04:24,087 - INFO - Processed 125100000 reads so far
2011-05-19 20:04:36,123 - INFO - Processed 125200000 reads so far
2011-05-19 20:04:48,583 - INFO - Processed 125300000 reads so far
2011-05-19 20:05:00,922 - INFO - Processed 125400000 reads so far
2011-05-19 20:05:13,659 - INFO - Processed 125500000 reads so far
2011-05-19 20:05:25,023 - INFO - Processed 125600000 reads so far
2011-05-19 20:05:38,112 - INFO - Processed 125700000 reads so far
2011-05-19 20:05:40,919 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:82990205-103010205
2011-05-19 20:05:50,440 - INFO - Processed 125800000 reads so far
2011-05-19 20:06:02,587 - INFO - Processed 125900000 reads so far
2011-05-19 20:06:15,548 - INFO - Processed 126000000 reads so far
2011-05-19 20:06:27,688 - INFO - Processed 126100000 reads so far
2011-05-19 20:06:40,365 - INFO - Processed 126200000 reads so far
2011-05-19 20:06:51,559 - INFO - Processed 126300000 reads so far
2011-05-19 20:07:02,677 - INFO - Processed 126400000 reads so far
2011-05-19 20:07:13,355 - INFO - Processed 126500000 reads so far
2011-05-19 20:07:25,627 - INFO - Processed 126600000 reads so far
2011-05-19 20:07:37,856 - INFO - Processed 126700000 reads so far
2011-05-19 20:07:45,745 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:102990231-123010231
2011-05-19 20:07:48,953 - INFO - Processed 126800000 reads so far
2011-05-19 20:07:57,733 - INFO - Processed 126900000 reads so far
2011-05-19 20:08:09,300 - INFO - Processed 127000000 reads so far
2011-05-19 20:08:21,638 - INFO - Processed 127100000 reads so far
2011-05-19 20:08:30,519 - INFO - Processed 127200000 reads so far
2011-05-19 20:08:39,387 - INFO - Processed 127300000 reads so far
2011-05-19 20:08:51,842 - INFO - Processed 127400000 reads so far
2011-05-19 20:09:04,843 - INFO - Processed 127500000 reads so far
2011-05-19 20:09:15,901 - INFO - Processed 127600000 reads so far
2011-05-19 20:09:26,798 - INFO - Processed 127700000 reads so far
2011-05-19 20:09:38,420 - INFO - Processed 127800000 reads so far
2011-05-19 20:09:44,883 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:122990284-143010284
2011-05-19 20:09:49,997 - INFO - Processed 127900000 reads so far
2011-05-19 20:10:01,083 - INFO - Processed 128000000 reads so far
2011-05-19 20:10:15,010 - INFO - Processed 128100000 reads so far
2011-05-19 20:10:26,546 - INFO - Processed 128200000 reads so far
2011-05-19 20:10:39,622 - INFO - Processed 128300000 reads so far
2011-05-19 20:10:53,442 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8_random:0-20010170
2011-05-19 20:10:53,544 - INFO - Processed 128400000 reads so far
2011-05-19 20:11:04,226 - INFO - Processed 128500000 reads so far
2011-05-19 20:11:05,889 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:2989961-23009961
2011-05-19 20:11:13,308 - INFO - Processed 128600000 reads so far
2011-05-19 20:11:20,539 - INFO - Processed 128700000 reads so far
2011-05-19 20:11:28,560 - INFO - Processed 128800000 reads so far
2011-05-19 20:11:38,792 - INFO - Processed 128900000 reads so far
2011-05-19 20:11:50,672 - INFO - Processed 129000000 reads so far
2011-05-19 20:11:59,331 - INFO - Processed 129100000 reads so far
2011-05-19 20:12:07,438 - INFO - Processed 129200000 reads so far
2011-05-19 20:12:16,001 - INFO - Processed 129300000 reads so far
2011-05-19 20:12:22,030 - INFO - Processed 129400000 reads so far
2011-05-19 20:12:28,974 - INFO - Processed 129500000 reads so far
2011-05-19 20:12:37,278 - INFO - Processed 129600000 reads so far
2011-05-19 20:12:47,607 - INFO - Processed 129700000 reads so far
2011-05-19 20:12:56,829 - INFO - Processed 129800000 reads so far
2011-05-19 20:13:09,879 - INFO - Processed 129900000 reads so far
2011-05-19 20:13:19,649 - INFO - Processed 130000000 reads so far
2011-05-19 20:13:28,946 - INFO - Processed 130100000 reads so far
2011-05-19 20:13:39,319 - INFO - Processed 130200000 reads so far
2011-05-19 20:13:49,373 - INFO - Processed 130300000 reads so far
2011-05-19 20:13:58,708 - INFO - Processed 130400000 reads so far
2011-05-19 20:14:08,243 - INFO - Processed 130500000 reads so far
2011-05-19 20:14:18,160 - INFO - Processed 130600000 reads so far
2011-05-19 20:14:28,101 - INFO - Processed 130700000 reads so far
2011-05-19 20:14:37,972 - INFO - Processed 130800000 reads so far
2011-05-19 20:14:46,884 - INFO - Processed 130900000 reads so far
2011-05-19 20:14:56,147 - INFO - Processed 131000000 reads so far
2011-05-19 20:15:05,495 - INFO - Processed 131100000 reads so far
2011-05-19 20:15:16,276 - INFO - Processed 131200000 reads so far
2011-05-19 20:15:24,688 - INFO - Processed 131300000 reads so far
2011-05-19 20:15:30,494 - INFO - Processed 131400000 reads so far
2011-05-19 20:15:39,119 - INFO - Processed 131500000 reads so far
2011-05-19 20:15:47,670 - INFO - Processed 131600000 reads so far
2011-05-19 20:16:01,913 - INFO - Processed 131700000 reads so far
2011-05-19 20:16:09,348 - INFO - Processed 131800000 reads so far
2011-05-19 20:16:19,172 - INFO - Processed 131900000 reads so far
2011-05-19 20:16:33,853 - INFO - Processed 132000000 reads so far
2011-05-19 20:16:44,459 - INFO - Processed 132100000 reads so far
2011-05-19 20:16:53,449 - INFO - Processed 132200000 reads so far
2011-05-19 20:17:03,374 - INFO - Processed 132300000 reads so far
2011-05-19 20:17:14,132 - INFO - Processed 132400000 reads so far
2011-05-19 20:17:23,001 - INFO - Processed 132500000 reads so far
2011-05-19 20:17:31,795 - INFO - Processed 132600000 reads so far
2011-05-19 20:17:38,876 - INFO - Processed 132700000 reads so far
2011-05-19 20:17:48,390 - INFO - Processed 132800000 reads so far
2011-05-19 20:17:59,885 - INFO - Processed 132900000 reads so far
2011-05-19 20:18:12,959 - INFO - Processed 133000000 reads so far
2011-05-19 20:18:19,366 - INFO - Processed 133100000 reads so far
2011-05-19 20:18:26,371 - INFO - Processed 133200000 reads so far
2011-05-19 20:18:36,659 - INFO - Processed 133300000 reads so far
2011-05-19 20:18:45,114 - INFO - Processed 133400000 reads so far
2011-05-19 20:18:54,250 - INFO - Processed 133500000 reads so far
2011-05-19 20:19:01,903 - INFO - Processed 133600000 reads so far
2011-05-19 20:19:08,425 - INFO - Processed 133700000 reads so far
2011-05-19 20:19:16,865 - INFO - Processed 133800000 reads so far
2011-05-19 20:19:26,364 - INFO - Processed 133900000 reads so far
2011-05-19 20:19:34,277 - INFO - Processed 134000000 reads so far
2011-05-19 20:19:41,178 - INFO - Processed 134100000 reads so far
2011-05-19 20:19:49,368 - INFO - Processed 134200000 reads so far
2011-05-19 20:19:58,504 - INFO - Processed 134300000 reads so far
2011-05-19 20:20:06,829 - INFO - Processed 134400000 reads so far
2011-05-19 20:20:15,436 - INFO - Processed 134500000 reads so far
2011-05-19 20:20:23,712 - INFO - Processed 134600000 reads so far
2011-05-19 20:20:33,568 - INFO - Processed 134700000 reads so far
2011-05-19 20:20:40,914 - INFO - Processed 134800000 reads so far
2011-05-19 20:20:49,573 - INFO - Processed 134900000 reads so far
2011-05-19 20:20:57,623 - INFO - Processed 135000000 reads so far
2011-05-19 20:21:13,976 - INFO - Processed 135100000 reads so far
2011-05-19 20:21:23,553 - INFO - Processed 135200000 reads so far
2011-05-19 20:21:30,588 - INFO - Processed 135300000 reads so far
2011-05-19 20:21:37,961 - INFO - Processed 135400000 reads so far
2011-05-19 20:21:50,517 - INFO - Processed 135500000 reads so far
2011-05-19 20:22:01,185 - INFO - Processed 135600000 reads so far
2011-05-19 20:22:09,622 - INFO - Processed 135700000 reads so far
2011-05-19 20:22:19,630 - INFO - Processed 135800000 reads so far
2011-05-19 20:22:27,574 - INFO - Processed 135900000 reads so far
2011-05-19 20:22:36,137 - INFO - Processed 136000000 reads so far
2011-05-19 20:22:44,252 - INFO - Processed 136100000 reads so far
2011-05-19 20:22:57,258 - INFO - Processed 136200000 reads so far
2011-05-19 20:23:06,492 - INFO - Processed 136300000 reads so far
2011-05-19 20:23:15,580 - INFO - Processed 136400000 reads so far
2011-05-19 20:23:22,772 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:22989977-43009977
2011-05-19 20:23:24,456 - INFO - Processed 136500000 reads so far
2011-05-19 20:23:34,020 - INFO - Processed 136600000 reads so far
2011-05-19 20:23:42,948 - INFO - Processed 136700000 reads so far
2011-05-19 20:23:51,625 - INFO - Processed 136800000 reads so far
2011-05-19 20:24:03,786 - INFO - Processed 136900000 reads so far
2011-05-19 20:24:13,446 - INFO - Processed 137000000 reads so far
2011-05-19 20:24:23,004 - INFO - Processed 137100000 reads so far
2011-05-19 20:24:31,052 - INFO - Processed 137200000 reads so far
2011-05-19 20:24:41,960 - INFO - Processed 137300000 reads so far
2011-05-19 20:24:51,685 - INFO - Processed 137400000 reads so far
2011-05-19 20:25:04,405 - INFO - Processed 137500000 reads so far
2011-05-19 20:25:15,917 - INFO - Processed 137600000 reads so far
2011-05-19 20:25:23,570 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:42989992-63009992
2011-05-19 20:25:27,368 - INFO - Processed 137700000 reads so far
2011-05-19 20:25:36,676 - INFO - Processed 137800000 reads so far
2011-05-19 20:25:44,816 - INFO - Processed 137900000 reads so far
2011-05-19 20:25:54,269 - INFO - Processed 138000000 reads so far
2011-05-19 20:26:03,779 - INFO - Processed 138100000 reads so far
2011-05-19 20:26:17,822 - INFO - Processed 138200000 reads so far
2011-05-19 20:26:27,797 - INFO - Processed 138300000 reads so far
2011-05-19 20:26:40,162 - INFO - Processed 138400000 reads so far
2011-05-19 20:26:52,571 - INFO - Processed 138500000 reads so far
2011-05-19 20:27:01,632 - INFO - Processed 138600000 reads so far
2011-05-19 20:27:11,751 - INFO - Processed 138700000 reads so far
2011-05-19 20:27:25,148 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:62990029-83010029
2011-05-19 20:27:25,700 - INFO - Processed 138800000 reads so far
2011-05-19 20:27:33,981 - INFO - Processed 138900000 reads so far
2011-05-19 20:27:46,354 - INFO - Processed 139000000 reads so far
2011-05-19 20:28:04,175 - INFO - Processed 139100000 reads so far
2011-05-19 20:28:11,298 - INFO - Processed 139200000 reads so far
2011-05-19 20:28:19,915 - INFO - Processed 139300000 reads so far
2011-05-19 20:28:29,939 - INFO - Processed 139400000 reads so far
2011-05-19 20:28:40,597 - INFO - Processed 139500000 reads so far
2011-05-19 20:28:50,238 - INFO - Processed 139600000 reads so far
2011-05-19 20:28:58,699 - INFO - Processed 139700000 reads so far
2011-05-19 20:29:07,267 - INFO - Processed 139800000 reads so far
2011-05-19 20:29:10,008 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:82990143-103010143
2011-05-19 20:29:14,793 - INFO - Processed 139900000 reads so far
2011-05-19 20:29:23,803 - INFO - Processed 140000000 reads so far
2011-05-19 20:29:32,648 - INFO - Processed 140100000 reads so far
2011-05-19 20:29:41,487 - INFO - Processed 140200000 reads so far
2011-05-19 20:29:50,352 - INFO - Processed 140300000 reads so far
2011-05-19 20:29:58,502 - INFO - Processed 140400000 reads so far
2011-05-19 20:30:09,542 - INFO - Processed 140500000 reads so far
2011-05-19 20:30:20,175 - INFO - Processed 140600000 reads so far
2011-05-19 20:30:31,169 - INFO - Processed 140700000 reads so far
2011-05-19 20:30:41,874 - INFO - Processed 140800000 reads so far
2011-05-19 20:30:46,696 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:102990153-123010153
2011-05-19 20:30:52,875 - INFO - Processed 140900000 reads so far
2011-05-19 20:31:04,496 - INFO - Processed 141000000 reads so far
2011-05-19 20:31:17,108 - INFO - Processed 141100000 reads so far
2011-05-19 20:31:26,590 - INFO - Processed 141200000 reads so far
2011-05-19 20:31:36,754 - INFO - Processed 141300000 reads so far
2011-05-19 20:31:45,315 - INFO - Processed 141400000 reads so far
2011-05-19 20:31:59,364 - INFO - Processed 141500000 reads so far
2011-05-19 20:32:10,774 - INFO - Processed 141600000 reads so far
2011-05-19 20:32:21,868 - INFO - Processed 141700000 reads so far
2011-05-19 20:32:33,354 - INFO - Processed 141800000 reads so far
2011-05-19 20:32:42,607 - INFO - Processed 141900000 reads so far
2011-05-19 20:32:53,643 - INFO - Processed 142000000 reads so far
2011-05-19 20:32:55,805 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:122990221-143010221
2011-05-19 20:33:01,935 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9_random:0-20010005
2011-05-19 20:33:05,247 - INFO - Processed 142100000 reads so far
2011-05-19 20:33:05,339 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrM:0-20010000
2011-05-19 20:33:15,104 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrUn_random:0-20010000
2011-05-19 20:33:15,610 - INFO - Processed 142200000 reads so far
2011-05-19 20:33:24,949 - INFO - Processed 142300000 reads so far
2011-05-19 20:33:34,457 - INFO - Processed 142400000 reads so far
2011-05-19 20:33:43,336 - INFO - Processed 142500000 reads so far
2011-05-19 20:33:50,969 - INFO - Processed 142600000 reads so far
2011-05-19 20:33:52,951 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:2990084-23010084
2011-05-19 20:33:59,608 - INFO - Processed 142700000 reads so far
2011-05-19 20:34:10,636 - INFO - Processed 142800000 reads so far
2011-05-19 20:34:20,203 - INFO - Processed 142900000 reads so far
2011-05-19 20:34:30,661 - INFO - Processed 143000000 reads so far
2011-05-19 20:34:41,252 - INFO - Processed 143100000 reads so far
2011-05-19 20:34:42,342 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:22990153-43010153
2011-05-19 20:34:49,737 - INFO - Processed 143200000 reads so far
2011-05-19 20:34:59,691 - INFO - Processed 143300000 reads so far
2011-05-19 20:35:08,590 - INFO - Processed 143400000 reads so far
2011-05-19 20:35:19,873 - INFO - Processed 143500000 reads so far
2011-05-19 20:35:27,128 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:42990253-63010253
2011-05-19 20:35:30,259 - INFO - Processed 143600000 reads so far
2011-05-19 20:35:41,822 - INFO - Processed 143700000 reads so far
2011-05-19 20:35:51,669 - INFO - Processed 143800000 reads so far
2011-05-19 20:36:01,003 - INFO - Processed 143900000 reads so far
2011-05-19 20:36:13,143 - INFO - Processed 144000000 reads so far
2011-05-19 20:36:17,584 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:62990281-83010281
2011-05-19 20:36:23,262 - INFO - Processed 144100000 reads so far
2011-05-19 20:36:32,129 - INFO - Processed 144200000 reads so far
2011-05-19 20:36:42,319 - INFO - Processed 144300000 reads so far
2011-05-19 20:36:52,697 - INFO - Processed 144400000 reads so far
2011-05-19 20:37:01,655 - INFO - Processed 144500000 reads so far
2011-05-19 20:37:02,373 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:82990411-103010411
2011-05-19 20:37:11,188 - INFO - Processed 144600000 reads so far
2011-05-19 20:37:20,161 - INFO - Processed 144700000 reads so far
2011-05-19 20:37:29,356 - INFO - Processed 144800000 reads so far
2011-05-19 20:37:39,899 - INFO - Processed 144900000 reads so far
2011-05-19 20:37:47,337 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:102990555-123010555
2011-05-19 20:37:51,062 - INFO - Processed 145000000 reads so far
2011-05-19 20:38:02,868 - INFO - Processed 145100000 reads so far
2011-05-19 20:38:14,367 - INFO - Processed 145200000 reads so far
2011-05-19 20:38:26,272 - INFO - Processed 145300000 reads so far
2011-05-19 20:38:37,312 - INFO - Processed 145400000 reads so far
2011-05-19 20:38:44,300 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:122990817-143010817
2011-05-19 20:38:47,090 - INFO - Processed 145500000 reads so far
2011-05-19 20:38:57,379 - INFO - Processed 145600000 reads so far
2011-05-19 20:39:08,513 - INFO - Processed 145700000 reads so far
2011-05-19 20:39:18,593 - INFO - Processed 145800000 reads so far
2011-05-19 20:39:29,443 - INFO - Processed 145900000 reads so far
2011-05-19 20:39:38,632 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:142990871-163010871
2011-05-19 20:39:38,833 - INFO - Processed 146000000 reads so far
2011-05-19 20:39:53,194 - INFO - Processed 146100000 reads so far
2011-05-19 20:40:02,412 - INFO - Processed 146200000 reads so far
2011-05-19 20:40:11,920 - INFO - Processed 146300000 reads so far
2011-05-19 20:40:23,229 - INFO - Processed 146400000 reads so far
2011-05-19 20:40:29,581 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:162990880-183010880
2011-05-19 20:40:33,916 - INFO - Processed 146500000 reads so far
2011-05-19 20:40:43,844 - INFO - Processed 146600000 reads so far
2011-05-19 20:40:55,873 - INFO - Processed 146700000 reads so far
2011-05-19 20:40:56,729 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX_random:0-20010000
2011-05-19 20:41:01,894 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY:0-20010000
2011-05-19 20:41:06,636 - INFO - Processed 146800000 reads so far
2011-05-19 20:41:10,616 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:0-20010737
2011-05-19 20:41:18,271 - INFO - Processed 146900000 reads so far
2011-05-19 20:41:27,960 - INFO - Processed 147000000 reads so far
2011-05-19 20:41:35,905 - INFO - Processed 147100000 reads so far
2011-05-19 20:41:48,285 - INFO - Processed 147200000 reads so far
2011-05-19 20:41:59,446 - INFO - Processed 147300000 reads so far
2011-05-19 20:42:09,368 - INFO - Processed 147400000 reads so far
2011-05-19 20:42:21,356 - INFO - Processed 147500000 reads so far
2011-05-19 20:42:27,365 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:19990773-40010773
2011-05-19 20:42:31,218 - INFO - Processed 147600000 reads so far
2011-05-19 20:42:41,627 - INFO - Processed 147700000 reads so far
2011-05-19 20:42:52,329 - INFO - Processed 147800000 reads so far
2011-05-19 20:43:00,927 - INFO - Processed 147900000 reads so far
2011-05-19 20:43:06,493 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:39990892-60010892
2011-05-19 20:43:10,810 - INFO - Processed 148000000 reads so far
2011-05-19 20:43:24,685 - INFO - Processed 148100000 reads so far
2011-05-19 20:43:33,293 - INFO - Processed 148200000 reads so far
2011-05-19 20:43:43,979 - INFO - Processed 148300000 reads so far
2011-05-19 20:43:57,501 - INFO - Processed 148400000 reads so far
2011-05-19 20:44:04,537 - INFO - Processed 148500000 reads so far
2011-05-19 20:44:09,058 - INFO - Processed 148600000 reads so far
2011-05-19 20:44:12,817 - INFO - Processed 148700000 reads so far
2011-05-19 20:44:15,264 - INFO - Processed 148800000 reads so far
2011-05-19 20:44:19,765 - INFO - Processed 148900000 reads so far
2011-05-19 20:44:23,016 - INFO - Processed 149000000 reads so far
2011-05-19 20:44:27,355 - INFO - Processed 149100000 reads so far
2011-05-19 20:44:31,361 - INFO - Processed 149200000 reads so far
2011-05-19 20:44:35,109 - INFO - Processed 149300000 reads so far
2011-05-19 20:44:38,335 - INFO - Processed 149400000 reads so far
2011-05-19 20:44:40,889 - INFO - Processed 149500000 reads so far
2011-05-19 20:44:44,173 - INFO - Processed 149600000 reads so far
2011-05-19 20:44:47,862 - INFO - Processed 149700000 reads so far
2011-05-19 20:44:50,928 - INFO - Processed 149800000 reads so far
2011-05-19 20:44:54,358 - INFO - Processed 149900000 reads so far
2011-05-19 20:44:58,118 - INFO - Processed 150000000 reads so far
2011-05-19 20:45:00,682 - INFO - Processed 150100000 reads so far
2011-05-19 20:45:03,754 - INFO - Processed 150200000 reads so far
2011-05-19 20:45:07,760 - INFO - Processed 150300000 reads so far
2011-05-19 20:45:11,576 - INFO - Processed 150400000 reads so far
2011-05-19 20:45:16,011 - INFO - Processed 150500000 reads so far
2011-05-19 20:45:18,377 - INFO - Finished loading data. Outputting QC metrics
2011-05-19 20:45:45,675 - INFO - Finished outputting QC metrics
2011-05-19 20:45:45,768 - INFO - Finished generating QC metrics