2011-05-19 20:45:46,046 - INFO - Generating QC metrics for BAM File ['WTCHG_11893.bam']
2011-05-19 20:45:46,047 - INFO - Output will go to WTCHG_11893.qc.txt.tmp
2011-05-19 20:45:46,047 - INFO - Reading GC Map from file /data/Genomes/gcMap/Mouse37.gcMap.gz
2011-05-19 20:48:28,778 - INFO - Finished reading GC Map
2011-05-19 20:48:28,778 - INFO - Reading CDS from exon definition file /data/Genomes/annotation/Mouse37.refGene.txt.gz
2011-05-19 20:48:31,938 - INFO - Read 382138 exons (33804740 nucleotides) for 32 chromosomes
2011-05-19 20:48:31,939 - INFO - Computing coverage cut-off
2011-05-19 20:48:31,939 - INFO - Retrieving BAM file coverage info from samtools pileup
2011-05-19 20:48:52,976 - INFO - Processed 1000000 pile-up sites
2011-05-19 20:48:59,593 - INFO - Processed 2000000 pile-up sites
2011-05-19 20:49:04,136 - INFO - Processed 3000000 pile-up sites
2011-05-19 20:49:08,312 - INFO - Processed 4000000 pile-up sites
2011-05-19 20:49:14,918 - INFO - Processed 5000000 pile-up sites
2011-05-19 20:49:17,969 - INFO - Processed 6000000 pile-up sites
2011-05-19 20:49:22,454 - INFO - Processed 7000000 pile-up sites
2011-05-19 20:49:26,987 - INFO - Processed 8000000 pile-up sites
2011-05-19 20:49:29,776 - INFO - Processed 9000000 pile-up sites
2011-05-19 20:49:32,088 - INFO - Processed 10000000 pile-up sites
2011-05-19 20:49:34,397 - INFO - Processed 11000000 pile-up sites
2011-05-19 20:49:37,120 - INFO - Processed 12000000 pile-up sites
2011-05-19 20:49:39,397 - INFO - Processed 13000000 pile-up sites
2011-05-19 20:49:43,230 - INFO - Processed 14000000 pile-up sites
2011-05-19 20:49:48,169 - INFO - Processed 15000000 pile-up sites
2011-05-19 20:49:52,990 - INFO - Processed 16000000 pile-up sites
2011-05-19 20:49:57,779 - INFO - Processed 17000000 pile-up sites
2011-05-19 20:50:02,680 - INFO - Processed 18000000 pile-up sites
2011-05-19 20:50:07,449 - INFO - Processed 19000000 pile-up sites
2011-05-19 20:50:12,036 - INFO - Processed 20000000 pile-up sites
2011-05-19 20:50:16,642 - INFO - Processed 21000000 pile-up sites
2011-05-19 20:50:21,445 - INFO - Processed 22000000 pile-up sites
2011-05-19 20:50:26,201 - INFO - Processed 23000000 pile-up sites
2011-05-19 20:50:30,735 - INFO - Processed 24000000 pile-up sites
2011-05-19 20:50:37,332 - INFO - Processed 25000000 pile-up sites
2011-05-19 20:50:42,151 - INFO - Processed 26000000 pile-up sites
2011-05-19 20:50:46,770 - INFO - Processed 27000000 pile-up sites
2011-05-19 20:50:52,640 - INFO - Processed 28000000 pile-up sites
2011-05-19 20:50:57,634 - INFO - Processed 29000000 pile-up sites
2011-05-19 20:51:02,764 - INFO - Processed 30000000 pile-up sites
2011-05-19 20:51:07,981 - INFO - Processed 31000000 pile-up sites
2011-05-19 20:51:12,400 - INFO - Processed 32000000 pile-up sites
2011-05-19 20:51:16,770 - INFO - Processed 33000000 pile-up sites
2011-05-19 20:51:19,080 - INFO - Processed 34000000 pile-up sites
2011-05-19 20:51:24,486 - INFO - Processed 35000000 pile-up sites
2011-05-19 20:51:27,505 - INFO - Processed 36000000 pile-up sites
2011-05-19 20:51:32,971 - INFO - Processed 37000000 pile-up sites
2011-05-19 20:51:38,869 - INFO - Processed 38000000 pile-up sites
2011-05-19 20:51:41,898 - INFO - Finished processing pile-up on 38604461 sites (200000002 nucleotides)
2011-05-19 20:51:41,898 - INFO - Coverage cut-off value is 24
2011-05-19 20:51:41,898 - INFO - Loading data into QC data manager
2011-05-19 20:51:42,140 - INFO - Reading data from BAM file WTCHG_11893.bam. All reads in file will be read
2011-05-19 20:51:42,183 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:2989999-23009999
2011-05-19 20:51:54,409 - INFO - Processed 100000 reads so far
2011-05-19 20:52:04,252 - INFO - Processed 200000 reads so far
2011-05-19 20:52:15,138 - INFO - Processed 300000 reads so far
2011-05-19 20:52:25,525 - INFO - Processed 400000 reads so far
2011-05-19 20:52:36,732 - INFO - Processed 500000 reads so far
2011-05-19 20:52:49,884 - INFO - Processed 600000 reads so far
2011-05-19 20:53:01,119 - INFO - Processed 700000 reads so far
2011-05-19 20:53:11,028 - INFO - Processed 800000 reads so far
2011-05-19 20:53:21,804 - INFO - Processed 900000 reads so far
2011-05-19 20:53:32,213 - INFO - Processed 1000000 reads so far
2011-05-19 20:53:33,818 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:22990089-43010089
2011-05-19 20:53:43,234 - INFO - Processed 1100000 reads so far
2011-05-19 20:53:54,479 - INFO - Processed 1200000 reads so far
2011-05-19 20:54:07,265 - INFO - Processed 1300000 reads so far
2011-05-19 20:54:18,493 - INFO - Processed 1400000 reads so far
2011-05-19 20:54:30,219 - INFO - Processed 1500000 reads so far
2011-05-19 20:54:40,513 - INFO - Processed 1600000 reads so far
2011-05-19 20:54:50,504 - INFO - Processed 1700000 reads so far
2011-05-19 20:55:01,364 - INFO - Processed 1800000 reads so far
2011-05-19 20:55:12,208 - INFO - Processed 1900000 reads so far
2011-05-19 20:55:22,055 - INFO - Processed 2000000 reads so far
2011-05-19 20:55:22,773 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:42990132-63010132
2011-05-19 20:55:31,555 - INFO - Processed 2100000 reads so far
2011-05-19 20:55:42,028 - INFO - Processed 2200000 reads so far
2011-05-19 20:55:52,138 - INFO - Processed 2300000 reads so far
2011-05-19 20:56:02,064 - INFO - Processed 2400000 reads so far
2011-05-19 20:56:12,916 - INFO - Processed 2500000 reads so far
2011-05-19 20:56:24,065 - INFO - Processed 2600000 reads so far
2011-05-19 20:56:35,275 - INFO - Processed 2700000 reads so far
2011-05-19 20:56:46,325 - INFO - Processed 2800000 reads so far
2011-05-19 20:56:59,140 - INFO - Processed 2900000 reads so far
2011-05-19 20:57:11,768 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:62990133-83010133
2011-05-19 20:57:12,199 - INFO - Processed 3000000 reads so far
2011-05-19 20:57:23,895 - INFO - Processed 3100000 reads so far
2011-05-19 20:57:33,673 - INFO - Processed 3200000 reads so far
2011-05-19 20:57:44,512 - INFO - Processed 3300000 reads so far
2011-05-19 20:57:56,803 - INFO - Processed 3400000 reads so far
2011-05-19 20:58:08,282 - INFO - Processed 3500000 reads so far
2011-05-19 20:58:19,213 - INFO - Processed 3600000 reads so far
2011-05-19 20:58:29,484 - INFO - Processed 3700000 reads so far
2011-05-19 20:58:38,260 - INFO - Processed 3800000 reads so far
2011-05-19 20:58:48,796 - INFO - Processed 3900000 reads so far
2011-05-19 20:58:57,913 - INFO - Processed 4000000 reads so far
2011-05-19 20:58:59,879 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:82990135-103010135
2011-05-19 20:59:09,758 - INFO - Processed 4100000 reads so far
2011-05-19 20:59:22,297 - INFO - Processed 4200000 reads so far
2011-05-19 20:59:32,262 - INFO - Processed 4300000 reads so far
2011-05-19 20:59:40,831 - INFO - Processed 4400000 reads so far
2011-05-19 20:59:49,763 - INFO - Processed 4500000 reads so far
2011-05-19 20:59:59,503 - INFO - Processed 4600000 reads so far
2011-05-19 21:00:09,309 - INFO - Processed 4700000 reads so far
2011-05-19 21:00:21,409 - INFO - Processed 4800000 reads so far
2011-05-19 21:00:32,765 - INFO - Processed 4900000 reads so far
2011-05-19 21:00:43,788 - INFO - Processed 5000000 reads so far
2011-05-19 21:00:45,408 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:102990147-123010147
2011-05-19 21:00:52,943 - INFO - Processed 5100000 reads so far
2011-05-19 21:01:02,115 - INFO - Processed 5200000 reads so far
2011-05-19 21:01:11,546 - INFO - Processed 5300000 reads so far
2011-05-19 21:01:20,627 - INFO - Processed 5400000 reads so far
2011-05-19 21:01:35,182 - INFO - Processed 5500000 reads so far
2011-05-19 21:01:46,668 - INFO - Processed 5600000 reads so far
2011-05-19 21:01:59,736 - INFO - Processed 5700000 reads so far
2011-05-19 21:02:10,726 - INFO - Processed 5800000 reads so far
2011-05-19 21:02:22,390 - INFO - Processed 5900000 reads so far
2011-05-19 21:02:35,920 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:122990156-143010156
2011-05-19 21:02:36,222 - INFO - Processed 6000000 reads so far
2011-05-19 21:02:49,097 - INFO - Processed 6100000 reads so far
2011-05-19 21:03:00,271 - INFO - Processed 6200000 reads so far
2011-05-19 21:03:13,006 - INFO - Processed 6300000 reads so far
2011-05-19 21:03:18,550 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:2990003-23010003
2011-05-19 21:03:24,357 - INFO - Processed 6400000 reads so far
2011-05-19 21:03:34,092 - INFO - Processed 6500000 reads so far
2011-05-19 21:03:43,476 - INFO - Processed 6600000 reads so far
2011-05-19 21:03:52,517 - INFO - Processed 6700000 reads so far
2011-05-19 21:04:02,980 - INFO - Processed 6800000 reads so far
2011-05-19 21:04:13,079 - INFO - Processed 6900000 reads so far
2011-05-19 21:04:21,836 - INFO - Processed 7000000 reads so far
2011-05-19 21:04:35,515 - INFO - Processed 7100000 reads so far
2011-05-19 21:04:47,755 - INFO - Processed 7200000 reads so far
2011-05-19 21:05:00,073 - INFO - Processed 7300000 reads so far
2011-05-19 21:05:13,607 - INFO - Processed 7400000 reads so far
2011-05-19 21:05:24,205 - INFO - Processed 7500000 reads so far
2011-05-19 21:05:27,421 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:22990024-43010024
2011-05-19 21:05:35,628 - INFO - Processed 7600000 reads so far
2011-05-19 21:05:46,971 - INFO - Processed 7700000 reads so far
2011-05-19 21:05:58,302 - INFO - Processed 7800000 reads so far
2011-05-19 21:06:09,480 - INFO - Processed 7900000 reads so far
2011-05-19 21:06:23,239 - INFO - Processed 8000000 reads so far
2011-05-19 21:06:34,747 - INFO - Processed 8100000 reads so far
2011-05-19 21:06:47,951 - INFO - Processed 8200000 reads so far
2011-05-19 21:06:59,578 - INFO - Processed 8300000 reads so far
2011-05-19 21:07:10,449 - INFO - Processed 8400000 reads so far
2011-05-19 21:07:22,167 - INFO - Processed 8500000 reads so far
2011-05-19 21:07:24,288 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:42990042-63010042
2011-05-19 21:07:33,813 - INFO - Processed 8600000 reads so far
2011-05-19 21:07:46,088 - INFO - Processed 8700000 reads so far
2011-05-19 21:07:58,047 - INFO - Processed 8800000 reads so far
2011-05-19 21:08:09,591 - INFO - Processed 8900000 reads so far
2011-05-19 21:08:21,001 - INFO - Processed 9000000 reads so far
2011-05-19 21:08:32,368 - INFO - Processed 9100000 reads so far
2011-05-19 21:08:43,328 - INFO - Processed 9200000 reads so far
2011-05-19 21:08:54,858 - INFO - Processed 9300000 reads so far
2011-05-19 21:09:06,270 - INFO - Processed 9400000 reads so far
2011-05-19 21:09:17,365 - INFO - Processed 9500000 reads so far
2011-05-19 21:09:25,840 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:62990082-83010082
2011-05-19 21:09:29,291 - INFO - Processed 9600000 reads so far
2011-05-19 21:09:39,945 - INFO - Processed 9700000 reads so far
2011-05-19 21:10:12,528 - INFO - Processed 9800000 reads so far
2011-05-19 21:10:39,374 - INFO - Processed 9900000 reads so far
2011-05-19 21:10:57,699 - INFO - Processed 10000000 reads so far
2011-05-19 21:11:14,898 - INFO - Processed 10100000 reads so far
2011-05-19 21:11:25,027 - INFO - Processed 10200000 reads so far
2011-05-19 21:11:33,247 - INFO - Processed 10300000 reads so far
2011-05-19 21:11:46,518 - INFO - Processed 10400000 reads so far
2011-05-19 21:11:57,201 - INFO - Processed 10500000 reads so far
2011-05-19 21:12:06,934 - INFO - Processed 10600000 reads so far
2011-05-19 21:12:07,777 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:82990098-103010098
2011-05-19 21:12:17,179 - INFO - Processed 10700000 reads so far
2011-05-19 21:12:28,047 - INFO - Processed 10800000 reads so far
2011-05-19 21:12:40,749 - INFO - Processed 10900000 reads so far
2011-05-19 21:12:53,031 - INFO - Processed 11000000 reads so far
2011-05-19 21:13:06,072 - INFO - Processed 11100000 reads so far
2011-05-19 21:13:17,838 - INFO - Processed 11200000 reads so far
2011-05-19 21:13:29,872 - INFO - Processed 11300000 reads so far
2011-05-19 21:13:40,345 - INFO - Processed 11400000 reads so far
2011-05-19 21:13:51,753 - INFO - Processed 11500000 reads so far
2011-05-19 21:14:03,561 - INFO - Processed 11600000 reads so far
2011-05-19 21:14:06,050 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:102990101-123010101
2011-05-19 21:14:17,838 - INFO - Processed 11700000 reads so far
2011-05-19 21:14:30,631 - INFO - Processed 11800000 reads so far
2011-05-19 21:14:41,727 - INFO - Processed 11900000 reads so far
2011-05-19 21:14:53,060 - INFO - Processed 12000000 reads so far
2011-05-19 21:15:07,060 - INFO - Processed 12100000 reads so far
2011-05-19 21:15:19,782 - INFO - Processed 12200000 reads so far
2011-05-19 21:15:30,892 - INFO - Processed 12300000 reads so far
2011-05-19 21:15:40,231 - INFO - Processed 12400000 reads so far
2011-05-19 21:15:54,692 - INFO - Processed 12500000 reads so far
2011-05-19 21:16:06,700 - INFO - Processed 12600000 reads so far
2011-05-19 21:16:07,702 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:2990002-23010002
2011-05-19 21:16:14,866 - INFO - Processed 12700000 reads so far
2011-05-19 21:16:27,044 - INFO - Processed 12800000 reads so far
2011-05-19 21:16:41,463 - INFO - Processed 12900000 reads so far
2011-05-19 21:16:53,216 - INFO - Processed 13000000 reads so far
2011-05-19 21:17:07,190 - INFO - Processed 13100000 reads so far
2011-05-19 21:17:17,969 - INFO - Processed 13200000 reads so far
2011-05-19 21:17:28,725 - INFO - Processed 13300000 reads so far
2011-05-19 21:17:43,186 - INFO - Processed 13400000 reads so far
2011-05-19 21:17:54,708 - INFO - Processed 13500000 reads so far
2011-05-19 21:18:05,243 - INFO - Processed 13600000 reads so far
2011-05-19 21:18:16,446 - INFO - Processed 13700000 reads so far
2011-05-19 21:18:20,687 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:22990014-43010014
2011-05-19 21:18:27,540 - INFO - Processed 13800000 reads so far
2011-05-19 21:18:38,501 - INFO - Processed 13900000 reads so far
2011-05-19 21:18:49,180 - INFO - Processed 14000000 reads so far
2011-05-19 21:19:00,298 - INFO - Processed 14100000 reads so far
2011-05-19 21:19:12,439 - INFO - Processed 14200000 reads so far
2011-05-19 21:19:21,667 - INFO - Processed 14300000 reads so far
2011-05-19 21:19:32,231 - INFO - Processed 14400000 reads so far
2011-05-19 21:19:41,919 - INFO - Processed 14500000 reads so far
2011-05-19 21:19:56,038 - INFO - Processed 14600000 reads so far
2011-05-19 21:20:06,890 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:42990041-63010041
2011-05-19 21:20:08,467 - INFO - Processed 14700000 reads so far
2011-05-19 21:20:20,212 - INFO - Processed 14800000 reads so far
2011-05-19 21:20:31,511 - INFO - Processed 14900000 reads so far
2011-05-19 21:20:46,833 - INFO - Processed 15000000 reads so far
2011-05-19 21:20:58,938 - INFO - Processed 15100000 reads so far
2011-05-19 21:21:10,552 - INFO - Processed 15200000 reads so far
2011-05-19 21:21:22,051 - INFO - Processed 15300000 reads so far
2011-05-19 21:21:32,211 - INFO - Processed 15400000 reads so far
2011-05-19 21:21:43,159 - INFO - Processed 15500000 reads so far
2011-05-19 21:21:53,625 - INFO - Processed 15600000 reads so far
2011-05-19 21:22:00,182 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:62990091-83010091
2011-05-19 21:22:07,804 - INFO - Processed 15700000 reads so far
2011-05-19 21:22:19,001 - INFO - Processed 15800000 reads so far
2011-05-19 21:22:29,173 - INFO - Processed 15900000 reads so far
2011-05-19 21:22:41,013 - INFO - Processed 16000000 reads so far
2011-05-19 21:22:50,066 - INFO - Processed 16100000 reads so far
2011-05-19 21:23:00,143 - INFO - Processed 16200000 reads so far
2011-05-19 21:23:09,177 - INFO - Processed 16300000 reads so far
2011-05-19 21:23:20,145 - INFO - Processed 16400000 reads so far
2011-05-19 21:23:31,504 - INFO - Processed 16500000 reads so far
2011-05-19 21:23:43,569 - INFO - Processed 16600000 reads so far
2011-05-19 21:23:47,843 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:82990098-103010098
2011-05-19 21:23:55,798 - INFO - Processed 16700000 reads so far
2011-05-19 21:24:07,299 - INFO - Processed 16800000 reads so far
2011-05-19 21:24:18,049 - INFO - Processed 16900000 reads so far
2011-05-19 21:24:28,716 - INFO - Processed 17000000 reads so far
2011-05-19 21:24:39,381 - INFO - Processed 17100000 reads so far
2011-05-19 21:24:50,178 - INFO - Processed 17200000 reads so far
2011-05-19 21:25:02,089 - INFO - Processed 17300000 reads so far
2011-05-19 21:25:14,513 - INFO - Processed 17400000 reads so far
2011-05-19 21:25:25,231 - INFO - Processed 17500000 reads so far
2011-05-19 21:25:35,747 - INFO - Processed 17600000 reads so far
2011-05-19 21:25:36,803 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:102990100-123010100
2011-05-19 21:25:46,750 - INFO - Processed 17700000 reads so far
2011-05-19 21:25:57,480 - INFO - Processed 17800000 reads so far
2011-05-19 21:26:11,596 - INFO - Processed 17900000 reads so far
2011-05-19 21:26:22,487 - INFO - Processed 18000000 reads so far
2011-05-19 21:26:34,130 - INFO - Processed 18100000 reads so far
2011-05-19 21:26:43,806 - INFO - Processed 18200000 reads so far
2011-05-19 21:26:54,786 - INFO - Processed 18300000 reads so far
2011-05-19 21:27:05,141 - INFO - Processed 18400000 reads so far
2011-05-19 21:27:15,284 - INFO - Processed 18500000 reads so far
2011-05-19 21:27:24,551 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:2990019-23010019
2011-05-19 21:27:25,424 - INFO - Processed 18600000 reads so far
2011-05-19 21:27:34,978 - INFO - Processed 18700000 reads so far
2011-05-19 21:27:46,237 - INFO - Processed 18800000 reads so far
2011-05-19 21:27:57,872 - INFO - Processed 18900000 reads so far
2011-05-19 21:28:09,101 - INFO - Processed 19000000 reads so far
2011-05-19 21:28:22,641 - INFO - Processed 19100000 reads so far
2011-05-19 21:28:33,984 - INFO - Processed 19200000 reads so far
2011-05-19 21:28:45,731 - INFO - Processed 19300000 reads so far
2011-05-19 21:28:58,190 - INFO - Processed 19400000 reads so far
2011-05-19 21:29:10,202 - INFO - Processed 19500000 reads so far
2011-05-19 21:29:17,272 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:22990087-43010087
2011-05-19 21:29:21,495 - INFO - Processed 19600000 reads so far
2011-05-19 21:29:36,668 - INFO - Processed 19700000 reads so far
2011-05-19 21:29:47,929 - INFO - Processed 19800000 reads so far
2011-05-19 21:30:00,494 - INFO - Processed 19900000 reads so far
2011-05-19 21:30:11,804 - INFO - Processed 20000000 reads so far
2011-05-19 21:30:22,208 - INFO - Processed 20100000 reads so far
2011-05-19 21:30:33,987 - INFO - Processed 20200000 reads so far
2011-05-19 21:30:44,459 - INFO - Processed 20300000 reads so far
2011-05-19 21:30:54,639 - INFO - Processed 20400000 reads so far
2011-05-19 21:31:05,932 - INFO - Processed 20500000 reads so far
2011-05-19 21:31:17,882 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:42990107-63010107
2011-05-19 21:31:19,499 - INFO - Processed 20600000 reads so far
2011-05-19 21:31:31,460 - INFO - Processed 20700000 reads so far
2011-05-19 21:31:44,346 - INFO - Processed 20800000 reads so far
2011-05-19 21:31:55,603 - INFO - Processed 20900000 reads so far
2011-05-19 21:32:07,774 - INFO - Processed 21000000 reads so far
2011-05-19 21:32:24,963 - INFO - Processed 21100000 reads so far
2011-05-19 21:32:36,279 - INFO - Processed 21200000 reads so far
2011-05-19 21:32:48,315 - INFO - Processed 21300000 reads so far
2011-05-19 21:32:59,731 - INFO - Processed 21400000 reads so far
2011-05-19 21:33:11,644 - INFO - Processed 21500000 reads so far
2011-05-19 21:33:23,550 - INFO - Processed 21600000 reads so far
2011-05-19 21:33:30,114 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:62990135-83010135
2011-05-19 21:33:36,803 - INFO - Processed 21700000 reads so far
2011-05-19 21:33:48,221 - INFO - Processed 21800000 reads so far
2011-05-19 21:34:00,339 - INFO - Processed 21900000 reads so far
2011-05-19 21:34:15,158 - INFO - Processed 22000000 reads so far
2011-05-19 21:34:31,911 - INFO - Processed 22100000 reads so far
2011-05-19 21:34:48,732 - INFO - Processed 22200000 reads so far
2011-05-19 21:34:58,749 - INFO - Processed 22300000 reads so far
2011-05-19 21:35:09,936 - INFO - Processed 22400000 reads so far
2011-05-19 21:35:21,188 - INFO - Processed 22500000 reads so far
2011-05-19 21:35:33,758 - INFO - Processed 22600000 reads so far
2011-05-19 21:35:39,358 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:82990136-103010136
2011-05-19 21:35:46,617 - INFO - Processed 22700000 reads so far
2011-05-19 21:36:02,298 - INFO - Processed 22800000 reads so far
2011-05-19 21:36:14,457 - INFO - Processed 22900000 reads so far
2011-05-19 21:36:25,779 - INFO - Processed 23000000 reads so far
2011-05-19 21:36:37,645 - INFO - Processed 23100000 reads so far
2011-05-19 21:36:49,002 - INFO - Processed 23200000 reads so far
2011-05-19 21:37:02,144 - INFO - Processed 23300000 reads so far
2011-05-19 21:37:13,791 - INFO - Processed 23400000 reads so far
2011-05-19 21:37:26,196 - INFO - Processed 23500000 reads so far
2011-05-19 21:37:39,099 - INFO - Processed 23600000 reads so far
2011-05-19 21:37:40,009 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:102990149-123010149
2011-05-19 21:37:52,667 - INFO - Processed 23700000 reads so far
2011-05-19 21:38:04,182 - INFO - Processed 23800000 reads so far
2011-05-19 21:38:15,638 - INFO - Processed 23900000 reads so far
2011-05-19 21:38:27,706 - INFO - Processed 24000000 reads so far
2011-05-19 21:38:38,717 - INFO - Processed 24100000 reads so far
2011-05-19 21:38:50,597 - INFO - Processed 24200000 reads so far
2011-05-19 21:39:01,976 - INFO - Processed 24300000 reads so far
2011-05-19 21:39:11,921 - INFO - Processed 24400000 reads so far
2011-05-19 21:39:19,933 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13_random:0-20010000
2011-05-19 21:39:21,118 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:2990021-23010021
2011-05-19 21:39:23,827 - INFO - Processed 24500000 reads so far
2011-05-19 21:39:36,368 - INFO - Processed 24600000 reads so far
2011-05-19 21:39:47,547 - INFO - Processed 24700000 reads so far
2011-05-19 21:39:59,376 - INFO - Processed 24800000 reads so far
2011-05-19 21:40:09,308 - INFO - Processed 24900000 reads so far
2011-05-19 21:40:20,786 - INFO - Processed 25000000 reads so far
2011-05-19 21:40:31,838 - INFO - Processed 25100000 reads so far
2011-05-19 21:40:43,985 - INFO - Processed 25200000 reads so far
2011-05-19 21:40:56,040 - INFO - Processed 25300000 reads so far
2011-05-19 21:41:09,186 - INFO - Processed 25400000 reads so far
2011-05-19 21:41:16,700 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:22990036-43010036
2011-05-19 21:41:23,632 - INFO - Processed 25500000 reads so far
2011-05-19 21:41:36,196 - INFO - Processed 25600000 reads so far
2011-05-19 21:41:47,528 - INFO - Processed 25700000 reads so far
2011-05-19 21:41:58,756 - INFO - Processed 25800000 reads so far
2011-05-19 21:42:10,128 - INFO - Processed 25900000 reads so far
2011-05-19 21:42:23,628 - INFO - Processed 26000000 reads so far
2011-05-19 21:42:34,846 - INFO - Processed 26100000 reads so far
2011-05-19 21:42:43,670 - INFO - Processed 26200000 reads so far
2011-05-19 21:42:54,954 - INFO - Processed 26300000 reads so far
2011-05-19 21:43:04,700 - INFO - Processed 26400000 reads so far
2011-05-19 21:43:11,815 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:42990084-63010084
2011-05-19 21:43:14,399 - INFO - Processed 26500000 reads so far
2011-05-19 21:43:22,380 - INFO - Processed 26600000 reads so far
2011-05-19 21:43:31,350 - INFO - Processed 26700000 reads so far
2011-05-19 21:43:40,517 - INFO - Processed 26800000 reads so far
2011-05-19 21:43:50,138 - INFO - Processed 26900000 reads so far
2011-05-19 21:43:59,192 - INFO - Processed 27000000 reads so far
2011-05-19 21:44:10,178 - INFO - Processed 27100000 reads so far
2011-05-19 21:44:19,621 - INFO - Processed 27200000 reads so far
2011-05-19 21:44:29,441 - INFO - Processed 27300000 reads so far
2011-05-19 21:44:38,984 - INFO - Processed 27400000 reads so far
2011-05-19 21:44:47,747 - INFO - Processed 27500000 reads so far
2011-05-19 21:44:48,548 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:62990095-83010095
2011-05-19 21:44:57,311 - INFO - Processed 27600000 reads so far
2011-05-19 21:45:07,392 - INFO - Processed 27700000 reads so far
2011-05-19 21:45:20,054 - INFO - Processed 27800000 reads so far
2011-05-19 21:45:29,818 - INFO - Processed 27900000 reads so far
2011-05-19 21:45:40,992 - INFO - Processed 28000000 reads so far
2011-05-19 21:45:52,324 - INFO - Processed 28100000 reads so far
2011-05-19 21:46:03,894 - INFO - Processed 28200000 reads so far
2011-05-19 21:46:14,556 - INFO - Processed 28300000 reads so far
2011-05-19 21:46:24,157 - INFO - Processed 28400000 reads so far
2011-05-19 21:46:35,451 - INFO - Processed 28500000 reads so far
2011-05-19 21:46:41,665 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:82990153-103010153
2011-05-19 21:46:47,689 - INFO - Processed 28600000 reads so far
2011-05-19 21:47:00,322 - INFO - Processed 28700000 reads so far
2011-05-19 21:47:11,919 - INFO - Processed 28800000 reads so far
2011-05-19 21:47:24,127 - INFO - Processed 28900000 reads so far
2011-05-19 21:47:36,507 - INFO - Processed 29000000 reads so far
2011-05-19 21:47:47,950 - INFO - Processed 29100000 reads so far
2011-05-19 21:47:59,443 - INFO - Processed 29200000 reads so far
2011-05-19 21:48:12,151 - INFO - Processed 29300000 reads so far
2011-05-19 21:48:24,247 - INFO - Processed 29400000 reads so far
2011-05-19 21:48:30,626 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:102990161-123010161
2011-05-19 21:48:35,770 - INFO - Processed 29500000 reads so far
2011-05-19 21:48:47,349 - INFO - Processed 29600000 reads so far
2011-05-19 21:48:59,780 - INFO - Processed 29700000 reads so far
2011-05-19 21:49:14,184 - INFO - Processed 29800000 reads so far
2011-05-19 21:49:25,726 - INFO - Processed 29900000 reads so far
2011-05-19 21:49:36,144 - INFO - Processed 30000000 reads so far
2011-05-19 21:49:47,836 - INFO - Processed 30100000 reads so far
2011-05-19 21:50:00,709 - INFO - Processed 30200000 reads so far
2011-05-19 21:50:07,954 - INFO - Processed 30300000 reads so far
2011-05-19 21:50:18,363 - INFO - Processed 30400000 reads so far
2011-05-19 21:50:20,307 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:122990170-143010170
2011-05-19 21:50:30,198 - INFO - Processed 30500000 reads so far
2011-05-19 21:50:32,613 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:2990028-23010028
2011-05-19 21:50:39,369 - INFO - Processed 30600000 reads so far
2011-05-19 21:50:49,483 - INFO - Processed 30700000 reads so far
2011-05-19 21:51:00,648 - INFO - Processed 30800000 reads so far
2011-05-19 21:51:12,273 - INFO - Processed 30900000 reads so far
2011-05-19 21:51:23,574 - INFO - Processed 31000000 reads so far
2011-05-19 21:51:35,409 - INFO - Processed 31100000 reads so far
2011-05-19 21:51:46,926 - INFO - Processed 31200000 reads so far
2011-05-19 21:51:58,174 - INFO - Processed 31300000 reads so far
2011-05-19 21:52:08,818 - INFO - Processed 31400000 reads so far
2011-05-19 21:52:17,521 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:22990034-43010034
2011-05-19 21:52:19,492 - INFO - Processed 31500000 reads so far
2011-05-19 21:52:29,293 - INFO - Processed 31600000 reads so far
2011-05-19 21:52:41,519 - INFO - Processed 31700000 reads so far
2011-05-19 21:52:52,834 - INFO - Processed 31800000 reads so far
2011-05-19 21:53:01,383 - INFO - Processed 31900000 reads so far
2011-05-19 21:53:10,156 - INFO - Processed 32000000 reads so far
2011-05-19 21:53:19,633 - INFO - Processed 32100000 reads so far
2011-05-19 21:53:27,799 - INFO - Processed 32200000 reads so far
2011-05-19 21:53:36,985 - INFO - Processed 32300000 reads so far
2011-05-19 21:53:47,247 - INFO - Processed 32400000 reads so far
2011-05-19 21:53:55,663 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:42990053-63010053
2011-05-19 21:53:56,928 - INFO - Processed 32500000 reads so far
2011-05-19 21:54:08,249 - INFO - Processed 32600000 reads so far
2011-05-19 21:54:19,663 - INFO - Processed 32700000 reads so far
2011-05-19 21:54:31,799 - INFO - Processed 32800000 reads so far
2011-05-19 21:54:42,096 - INFO - Processed 32900000 reads so far
2011-05-19 21:54:51,848 - INFO - Processed 33000000 reads so far
2011-05-19 21:55:02,774 - INFO - Processed 33100000 reads so far
2011-05-19 21:55:14,308 - INFO - Processed 33200000 reads so far
2011-05-19 21:55:24,920 - INFO - Processed 33300000 reads so far
2011-05-19 21:55:35,458 - INFO - Processed 33400000 reads so far
2011-05-19 21:55:42,472 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:62990061-83010061
2011-05-19 21:55:46,674 - INFO - Processed 33500000 reads so far
2011-05-19 21:55:57,910 - INFO - Processed 33600000 reads so far
2011-05-19 21:56:10,643 - INFO - Processed 33700000 reads so far
2011-05-19 21:56:22,102 - INFO - Processed 33800000 reads so far
2011-05-19 21:56:34,545 - INFO - Processed 33900000 reads so far
2011-05-19 21:56:46,612 - INFO - Processed 34000000 reads so far
2011-05-19 21:56:57,033 - INFO - Processed 34100000 reads so far
2011-05-19 21:57:08,089 - INFO - Processed 34200000 reads so far
2011-05-19 21:57:21,168 - INFO - Processed 34300000 reads so far
2011-05-19 21:57:34,202 - INFO - Processed 34400000 reads so far
2011-05-19 21:57:45,678 - INFO - Processed 34500000 reads so far
2011-05-19 21:57:54,277 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:82990090-103010090
2011-05-19 21:58:00,460 - INFO - Processed 34600000 reads so far
2011-05-19 21:58:10,684 - INFO - Processed 34700000 reads so far
2011-05-19 21:58:21,143 - INFO - Processed 34800000 reads so far
2011-05-19 21:58:30,550 - INFO - Processed 34900000 reads so far
2011-05-19 21:58:41,183 - INFO - Processed 35000000 reads so far
2011-05-19 21:58:50,445 - INFO - Processed 35100000 reads so far
2011-05-19 21:59:00,966 - INFO - Processed 35200000 reads so far
2011-05-19 21:59:12,915 - INFO - Processed 35300000 reads so far
2011-05-19 21:59:26,306 - INFO - Processed 35400000 reads so far
2011-05-19 21:59:35,726 - INFO - Processed 35500000 reads so far
2011-05-19 21:59:46,627 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:102990137-123010137
2011-05-19 21:59:47,308 - INFO - Processed 35600000 reads so far
2011-05-19 21:59:49,216 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:2990092-23010092
2011-05-19 21:59:56,956 - INFO - Processed 35700000 reads so far
2011-05-19 22:00:09,540 - INFO - Processed 35800000 reads so far
2011-05-19 22:00:24,177 - INFO - Processed 35900000 reads so far
2011-05-19 22:00:36,500 - INFO - Processed 36000000 reads so far
2011-05-19 22:00:49,604 - INFO - Processed 36100000 reads so far
2011-05-19 22:01:00,998 - INFO - Processed 36200000 reads so far
2011-05-19 22:01:12,394 - INFO - Processed 36300000 reads so far
2011-05-19 22:01:25,983 - INFO - Processed 36400000 reads so far
2011-05-19 22:01:37,622 - INFO - Processed 36500000 reads so far
2011-05-19 22:01:50,621 - INFO - Processed 36600000 reads so far
2011-05-19 22:02:02,219 - INFO - Processed 36700000 reads so far
2011-05-19 22:02:03,666 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:22990148-43010148
2011-05-19 22:02:13,309 - INFO - Processed 36800000 reads so far
2011-05-19 22:02:24,412 - INFO - Processed 36900000 reads so far
2011-05-19 22:02:35,123 - INFO - Processed 37000000 reads so far
2011-05-19 22:02:45,951 - INFO - Processed 37100000 reads so far
2011-05-19 22:02:53,495 - INFO - Processed 37200000 reads so far
2011-05-19 22:03:03,208 - INFO - Processed 37300000 reads so far
2011-05-19 22:03:13,305 - INFO - Processed 37400000 reads so far
2011-05-19 22:03:24,304 - INFO - Processed 37500000 reads so far
2011-05-19 22:03:37,581 - INFO - Processed 37600000 reads so far
2011-05-19 22:03:49,009 - INFO - Processed 37700000 reads so far
2011-05-19 22:03:51,549 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:42990156-63010156
2011-05-19 22:04:00,976 - INFO - Processed 37800000 reads so far
2011-05-19 22:04:12,069 - INFO - Processed 37900000 reads so far
2011-05-19 22:04:22,760 - INFO - Processed 38000000 reads so far
2011-05-19 22:04:35,572 - INFO - Processed 38100000 reads so far
2011-05-19 22:04:47,048 - INFO - Processed 38200000 reads so far
2011-05-19 22:04:57,994 - INFO - Processed 38300000 reads so far
2011-05-19 22:05:08,494 - INFO - Processed 38400000 reads so far
2011-05-19 22:05:18,841 - INFO - Processed 38500000 reads so far
2011-05-19 22:05:30,449 - INFO - Processed 38600000 reads so far
2011-05-19 22:05:39,926 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:62990183-83010183
2011-05-19 22:05:41,438 - INFO - Processed 38700000 reads so far
2011-05-19 22:05:52,863 - INFO - Processed 38800000 reads so far
2011-05-19 22:06:02,384 - INFO - Processed 38900000 reads so far
2011-05-19 22:06:10,485 - INFO - Processed 39000000 reads so far
2011-05-19 22:06:21,877 - INFO - Processed 39100000 reads so far
2011-05-19 22:06:34,520 - INFO - Processed 39200000 reads so far
2011-05-19 22:06:46,048 - INFO - Processed 39300000 reads so far
2011-05-19 22:06:57,920 - INFO - Processed 39400000 reads so far
2011-05-19 22:07:08,614 - INFO - Processed 39500000 reads so far
2011-05-19 22:07:20,169 - INFO - Processed 39600000 reads so far
2011-05-19 22:07:20,896 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:82990260-103010260
2011-05-19 22:07:30,859 - INFO - Processed 39700000 reads so far
2011-05-19 22:07:43,414 - INFO - Processed 39800000 reads so far
2011-05-19 22:07:53,060 - INFO - Processed 39900000 reads so far
2011-05-19 22:08:02,942 - INFO - Processed 40000000 reads so far
2011-05-19 22:08:12,868 - INFO - Processed 40100000 reads so far
2011-05-19 22:08:23,736 - INFO - Processed 40200000 reads so far
2011-05-19 22:08:36,022 - INFO - Processed 40300000 reads so far
2011-05-19 22:08:46,489 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16_random:0-20010351
2011-05-19 22:08:46,514 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:2989982-23009982
2011-05-19 22:08:47,206 - INFO - Processed 40400000 reads so far
2011-05-19 22:08:56,775 - INFO - Processed 40500000 reads so far
2011-05-19 22:09:07,938 - INFO - Processed 40600000 reads so far
2011-05-19 22:09:40,029 - INFO - Processed 40700000 reads so far
2011-05-19 22:09:51,043 - INFO - Processed 40800000 reads so far
2011-05-19 22:10:01,147 - INFO - Processed 40900000 reads so far
2011-05-19 22:10:11,039 - INFO - Processed 41000000 reads so far
2011-05-19 22:10:20,663 - INFO - Processed 41100000 reads so far
2011-05-19 22:10:30,641 - INFO - Processed 41200000 reads so far
2011-05-19 22:10:38,788 - INFO - Processed 41300000 reads so far
2011-05-19 22:10:47,162 - INFO - Processed 41400000 reads so far
2011-05-19 22:10:49,569 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:22990140-43010140
2011-05-19 22:10:55,181 - INFO - Processed 41500000 reads so far
2011-05-19 22:11:04,731 - INFO - Processed 41600000 reads so far
2011-05-19 22:11:14,806 - INFO - Processed 41700000 reads so far
2011-05-19 22:11:24,109 - INFO - Processed 41800000 reads so far
2011-05-19 22:11:32,510 - INFO - Processed 41900000 reads so far
2011-05-19 22:11:42,893 - INFO - Processed 42000000 reads so far
2011-05-19 22:11:50,606 - INFO - Processed 42100000 reads so far
2011-05-19 22:11:58,302 - INFO - Processed 42200000 reads so far
2011-05-19 22:12:07,712 - INFO - Processed 42300000 reads so far
2011-05-19 22:12:15,655 - INFO - Processed 42400000 reads so far
2011-05-19 22:12:25,408 - INFO - Processed 42500000 reads so far
2011-05-19 22:12:28,562 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:42990174-63010174
2011-05-19 22:12:33,829 - INFO - Processed 42600000 reads so far
2011-05-19 22:12:42,333 - INFO - Processed 42700000 reads so far
2011-05-19 22:12:49,744 - INFO - Processed 42800000 reads so far
2011-05-19 22:12:58,065 - INFO - Processed 42900000 reads so far
2011-05-19 22:13:07,003 - INFO - Processed 43000000 reads so far
2011-05-19 22:13:19,054 - INFO - Processed 43100000 reads so far
2011-05-19 22:13:27,914 - INFO - Processed 43200000 reads so far
2011-05-19 22:13:37,145 - INFO - Processed 43300000 reads so far
2011-05-19 22:13:46,262 - INFO - Processed 43400000 reads so far
2011-05-19 22:13:55,274 - INFO - Processed 43500000 reads so far
2011-05-19 22:13:58,246 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:62990197-83010197
2011-05-19 22:14:03,806 - INFO - Processed 43600000 reads so far
2011-05-19 22:14:12,641 - INFO - Processed 43700000 reads so far
2011-05-19 22:14:20,884 - INFO - Processed 43800000 reads so far
2011-05-19 22:14:29,093 - INFO - Processed 43900000 reads so far
2011-05-19 22:14:37,296 - INFO - Processed 44000000 reads so far
2011-05-19 22:14:46,085 - INFO - Processed 44100000 reads so far
2011-05-19 22:14:54,391 - INFO - Processed 44200000 reads so far
2011-05-19 22:15:03,056 - INFO - Processed 44300000 reads so far
2011-05-19 22:15:12,718 - INFO - Processed 44400000 reads so far
2011-05-19 22:15:21,123 - INFO - Processed 44500000 reads so far
2011-05-19 22:15:24,126 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:82990216-103010216
2011-05-19 22:15:29,270 - INFO - Processed 44600000 reads so far
2011-05-19 22:15:40,207 - INFO - Processed 44700000 reads so far
2011-05-19 22:15:52,840 - INFO - Processed 44800000 reads so far
2011-05-19 22:16:03,658 - INFO - Processed 44900000 reads so far
2011-05-19 22:16:13,092 - INFO - Processed 45000000 reads so far
2011-05-19 22:16:22,343 - INFO - Processed 45100000 reads so far
2011-05-19 22:16:29,137 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17_random:0-20010048
2011-05-19 22:16:30,828 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:2989999-23009999
2011-05-19 22:16:33,721 - INFO - Processed 45200000 reads so far
2011-05-19 22:16:42,706 - INFO - Processed 45300000 reads so far
2011-05-19 22:16:51,834 - INFO - Processed 45400000 reads so far
2011-05-19 22:16:59,981 - INFO - Processed 45500000 reads so far
2011-05-19 22:17:08,222 - INFO - Processed 45600000 reads so far
2011-05-19 22:17:16,962 - INFO - Processed 45700000 reads so far
2011-05-19 22:17:24,852 - INFO - Processed 45800000 reads so far
2011-05-19 22:17:35,437 - INFO - Processed 45900000 reads so far
2011-05-19 22:17:42,585 - INFO - Processed 46000000 reads so far
2011-05-19 22:17:49,919 - INFO - Processed 46100000 reads so far
2011-05-19 22:17:58,100 - INFO - Processed 46200000 reads so far
2011-05-19 22:17:59,999 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:22990027-43010027
2011-05-19 22:18:08,905 - INFO - Processed 46300000 reads so far
2011-05-19 22:18:18,078 - INFO - Processed 46400000 reads so far
2011-05-19 22:18:27,172 - INFO - Processed 46500000 reads so far
2011-05-19 22:18:36,271 - INFO - Processed 46600000 reads so far
2011-05-19 22:18:47,730 - INFO - Processed 46700000 reads so far
2011-05-19 22:18:59,322 - INFO - Processed 46800000 reads so far
2011-05-19 22:19:10,895 - INFO - Processed 46900000 reads so far
2011-05-19 22:19:21,958 - INFO - Processed 47000000 reads so far
2011-05-19 22:19:30,373 - INFO - Processed 47100000 reads so far
2011-05-19 22:19:40,148 - INFO - Processed 47200000 reads so far
2011-05-19 22:19:44,805 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:42990028-63010028
2011-05-19 22:19:53,420 - INFO - Processed 47300000 reads so far
2011-05-19 22:20:03,397 - INFO - Processed 47400000 reads so far
2011-05-19 22:20:12,762 - INFO - Processed 47500000 reads so far
2011-05-19 22:20:20,980 - INFO - Processed 47600000 reads so far
2011-05-19 22:20:29,454 - INFO - Processed 47700000 reads so far
2011-05-19 22:20:37,920 - INFO - Processed 47800000 reads so far
2011-05-19 22:20:48,337 - INFO - Processed 47900000 reads so far
2011-05-19 22:20:59,808 - INFO - Processed 48000000 reads so far
2011-05-19 22:21:13,449 - INFO - Processed 48100000 reads so far
2011-05-19 22:21:26,717 - INFO - Processed 48200000 reads so far
2011-05-19 22:21:30,602 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:62990050-83010050
2011-05-19 22:21:39,599 - INFO - Processed 48300000 reads so far
2011-05-19 22:21:50,699 - INFO - Processed 48400000 reads so far
2011-05-19 22:22:01,792 - INFO - Processed 48500000 reads so far
2011-05-19 22:22:13,535 - INFO - Processed 48600000 reads so far
2011-05-19 22:22:25,158 - INFO - Processed 48700000 reads so far
2011-05-19 22:22:36,411 - INFO - Processed 48800000 reads so far
2011-05-19 22:22:48,326 - INFO - Processed 48900000 reads so far
2011-05-19 22:22:59,562 - INFO - Processed 49000000 reads so far
2011-05-19 22:23:08,287 - INFO - Processed 49100000 reads so far
2011-05-19 22:23:20,335 - INFO - Processed 49200000 reads so far
2011-05-19 22:23:27,628 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:82990083-103010083
2011-05-19 22:23:31,621 - INFO - Processed 49300000 reads so far
2011-05-19 22:23:43,767 - INFO - Processed 49400000 reads so far
2011-05-19 22:23:58,240 - INFO - Processed 49500000 reads so far
2011-05-19 22:24:14,164 - INFO - Processed 49600000 reads so far
2011-05-19 22:24:18,067 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:2990056-23010056
2011-05-19 22:24:24,391 - INFO - Processed 49700000 reads so far
2011-05-19 22:24:36,054 - INFO - Processed 49800000 reads so far
2011-05-19 22:24:47,643 - INFO - Processed 49900000 reads so far
2011-05-19 22:24:59,114 - INFO - Processed 50000000 reads so far
2011-05-19 22:25:08,408 - INFO - Processed 50100000 reads so far
2011-05-19 22:25:18,838 - INFO - Processed 50200000 reads so far
2011-05-19 22:25:28,792 - INFO - Processed 50300000 reads so far
2011-05-19 22:25:38,878 - INFO - Processed 50400000 reads so far
2011-05-19 22:25:48,746 - INFO - Processed 50500000 reads so far
2011-05-19 22:25:59,071 - INFO - Processed 50600000 reads so far
2011-05-19 22:26:02,746 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:22990066-43010066
2011-05-19 22:26:09,057 - INFO - Processed 50700000 reads so far
2011-05-19 22:26:18,649 - INFO - Processed 50800000 reads so far
2011-05-19 22:26:27,591 - INFO - Processed 50900000 reads so far
2011-05-19 22:26:38,322 - INFO - Processed 51000000 reads so far
2011-05-19 22:26:47,969 - INFO - Processed 51100000 reads so far
2011-05-19 22:26:57,144 - INFO - Processed 51200000 reads so far
2011-05-19 22:27:07,109 - INFO - Processed 51300000 reads so far
2011-05-19 22:27:16,690 - INFO - Processed 51400000 reads so far
2011-05-19 22:27:25,891 - INFO - Processed 51500000 reads so far
2011-05-19 22:27:35,811 - INFO - Processed 51600000 reads so far
2011-05-19 22:27:41,971 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:42990069-63010069
2011-05-19 22:27:47,032 - INFO - Processed 51700000 reads so far
2011-05-19 22:27:57,229 - INFO - Processed 51800000 reads so far
2011-05-19 22:28:06,657 - INFO - Processed 51900000 reads so far
2011-05-19 22:28:16,417 - INFO - Processed 52000000 reads so far
2011-05-19 22:28:25,880 - INFO - Processed 52100000 reads so far
2011-05-19 22:28:34,170 - INFO - Processed 52200000 reads so far
2011-05-19 22:28:44,940 - INFO - Processed 52300000 reads so far
2011-05-19 22:28:54,724 - INFO - Processed 52400000 reads so far
2011-05-19 22:29:06,340 - INFO - Processed 52500000 reads so far
2011-05-19 22:29:15,176 - INFO - Processed 52600000 reads so far
2011-05-19 22:29:15,442 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:2989975-23009975
2011-05-19 22:29:23,849 - INFO - Processed 52700000 reads so far
2011-05-19 22:29:35,252 - INFO - Processed 52800000 reads so far
2011-05-19 22:29:45,865 - INFO - Processed 52900000 reads so far
2011-05-19 22:29:54,334 - INFO - Processed 53000000 reads so far
2011-05-19 22:30:01,612 - INFO - Processed 53100000 reads so far
2011-05-19 22:30:11,650 - INFO - Processed 53200000 reads so far
2011-05-19 22:30:18,982 - INFO - Processed 53300000 reads so far
2011-05-19 22:30:28,609 - INFO - Processed 53400000 reads so far
2011-05-19 22:30:37,117 - INFO - Processed 53500000 reads so far
2011-05-19 22:30:44,624 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:22990031-43010031
2011-05-19 22:30:46,497 - INFO - Processed 53600000 reads so far
2011-05-19 22:30:57,388 - INFO - Processed 53700000 reads so far
2011-05-19 22:31:09,489 - INFO - Processed 53800000 reads so far
2011-05-19 22:31:21,955 - INFO - Processed 53900000 reads so far
2011-05-19 22:31:32,235 - INFO - Processed 54000000 reads so far
2011-05-19 22:31:41,604 - INFO - Processed 54100000 reads so far
2011-05-19 22:31:52,301 - INFO - Processed 54200000 reads so far
2011-05-19 22:31:59,616 - INFO - Processed 54300000 reads so far
2011-05-19 22:32:08,890 - INFO - Processed 54400000 reads so far
2011-05-19 22:32:20,184 - INFO - Processed 54500000 reads so far
2011-05-19 22:32:27,684 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:42990064-63010064
2011-05-19 22:32:29,295 - INFO - Processed 54600000 reads so far
2011-05-19 22:32:40,034 - INFO - Processed 54700000 reads so far
2011-05-19 22:32:49,017 - INFO - Processed 54800000 reads so far
2011-05-19 22:32:58,382 - INFO - Processed 54900000 reads so far
2011-05-19 22:33:07,561 - INFO - Processed 55000000 reads so far
2011-05-19 22:33:18,782 - INFO - Processed 55100000 reads so far
2011-05-19 22:33:28,823 - INFO - Processed 55200000 reads so far
2011-05-19 22:33:37,605 - INFO - Processed 55300000 reads so far
2011-05-19 22:33:50,349 - INFO - Processed 55400000 reads so far
2011-05-19 22:34:01,347 - INFO - Processed 55500000 reads so far
2011-05-19 22:34:07,733 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:62990071-83010071
2011-05-19 22:34:11,031 - INFO - Processed 55600000 reads so far
2011-05-19 22:34:19,819 - INFO - Processed 55700000 reads so far
2011-05-19 22:34:30,618 - INFO - Processed 55800000 reads so far
2011-05-19 22:34:40,291 - INFO - Processed 55900000 reads so far
2011-05-19 22:34:50,480 - INFO - Processed 56000000 reads so far
2011-05-19 22:34:59,723 - INFO - Processed 56100000 reads so far
2011-05-19 22:35:08,684 - INFO - Processed 56200000 reads so far
2011-05-19 22:35:18,371 - INFO - Processed 56300000 reads so far
2011-05-19 22:35:29,033 - INFO - Processed 56400000 reads so far
2011-05-19 22:35:40,510 - INFO - Processed 56500000 reads so far
2011-05-19 22:35:47,158 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:82990075-103010075
2011-05-19 22:35:52,085 - INFO - Processed 56600000 reads so far
2011-05-19 22:36:04,189 - INFO - Processed 56700000 reads so far
2011-05-19 22:36:14,136 - INFO - Processed 56800000 reads so far
2011-05-19 22:36:26,770 - INFO - Processed 56900000 reads so far
2011-05-19 22:36:38,222 - INFO - Processed 57000000 reads so far
2011-05-19 22:36:46,871 - INFO - Processed 57100000 reads so far
2011-05-19 22:36:58,099 - INFO - Processed 57200000 reads so far
2011-05-19 22:37:08,268 - INFO - Processed 57300000 reads so far
2011-05-19 22:37:17,025 - INFO - Processed 57400000 reads so far
2011-05-19 22:37:27,231 - INFO - Processed 57500000 reads so far
2011-05-19 22:37:34,053 - INFO - Processed 57600000 reads so far
2011-05-19 22:37:37,995 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:102990205-123010205
2011-05-19 22:37:42,341 - INFO - Processed 57700000 reads so far
2011-05-19 22:37:50,936 - INFO - Processed 57800000 reads so far
2011-05-19 22:38:02,427 - INFO - Processed 57900000 reads so far
2011-05-19 22:38:17,649 - INFO - Processed 58000000 reads so far
2011-05-19 22:38:29,439 - INFO - Processed 58100000 reads so far
2011-05-19 22:38:40,929 - INFO - Processed 58200000 reads so far
2011-05-19 22:38:55,024 - INFO - Processed 58300000 reads so far
2011-05-19 22:39:08,244 - INFO - Processed 58400000 reads so far
2011-05-19 22:39:20,660 - INFO - Processed 58500000 reads so far
2011-05-19 22:39:35,449 - INFO - Processed 58600000 reads so far
2011-05-19 22:39:36,585 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:122990208-143010208
2011-05-19 22:39:47,132 - INFO - Processed 58700000 reads so far
2011-05-19 22:40:00,194 - INFO - Processed 58800000 reads so far
2011-05-19 22:40:12,337 - INFO - Processed 58900000 reads so far
2011-05-19 22:40:24,729 - INFO - Processed 59000000 reads so far
2011-05-19 22:40:36,478 - INFO - Processed 59100000 reads so far
2011-05-19 22:40:48,711 - INFO - Processed 59200000 reads so far
2011-05-19 22:41:01,648 - INFO - Processed 59300000 reads so far
2011-05-19 22:41:14,188 - INFO - Processed 59400000 reads so far
2011-05-19 22:41:27,264 - INFO - Processed 59500000 reads so far
2011-05-19 22:41:39,224 - INFO - Processed 59600000 reads so far
2011-05-19 22:41:42,991 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:142990217-163010217
2011-05-19 22:41:52,083 - INFO - Processed 59700000 reads so far
2011-05-19 22:42:05,000 - INFO - Processed 59800000 reads so far
2011-05-19 22:42:17,431 - INFO - Processed 59900000 reads so far
2011-05-19 22:42:29,902 - INFO - Processed 60000000 reads so far
2011-05-19 22:42:42,648 - INFO - Processed 60100000 reads so far
2011-05-19 22:42:55,001 - INFO - Processed 60200000 reads so far
2011-05-19 22:43:07,156 - INFO - Processed 60300000 reads so far
2011-05-19 22:43:18,457 - INFO - Processed 60400000 reads so far
2011-05-19 22:43:30,079 - INFO - Processed 60500000 reads so far
2011-05-19 22:43:38,536 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:162990247-183010247
2011-05-19 22:43:39,341 - INFO - Processed 60600000 reads so far
2011-05-19 22:43:50,124 - INFO - Processed 60700000 reads so far
2011-05-19 22:44:03,760 - INFO - Processed 60800000 reads so far
2011-05-19 22:44:16,373 - INFO - Processed 60900000 reads so far
2011-05-19 22:44:28,870 - INFO - Processed 61000000 reads so far
2011-05-19 22:44:40,626 - INFO - Processed 61100000 reads so far
2011-05-19 22:44:53,421 - INFO - Processed 61200000 reads so far
2011-05-19 22:45:14,625 - INFO - Processed 61300000 reads so far
2011-05-19 22:45:25,755 - INFO - Processed 61400000 reads so far
2011-05-19 22:45:39,308 - INFO - Processed 61500000 reads so far
2011-05-19 22:45:48,858 - INFO - Processed 61600000 reads so far
2011-05-19 22:45:51,807 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:182990248-203010248
2011-05-19 22:45:59,889 - INFO - Processed 61700000 reads so far
2011-05-19 22:46:10,642 - INFO - Processed 61800000 reads so far
2011-05-19 22:46:23,730 - INFO - Processed 61900000 reads so far
2011-05-19 22:46:34,653 - INFO - Processed 62000000 reads so far
2011-05-19 22:46:45,335 - INFO - Processed 62100000 reads so far
2011-05-19 22:46:55,078 - INFO - Processed 62200000 reads so far
2011-05-19 22:47:05,381 - INFO - Processed 62300000 reads so far
2011-05-19 22:47:12,642 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1_random:0-20010000
2011-05-19 22:47:15,716 - INFO - Processed 62400000 reads so far
2011-05-19 22:47:24,101 - INFO - Processed 62500000 reads so far
2011-05-19 22:47:26,188 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:2990090-23010090
2011-05-19 22:47:33,956 - INFO - Processed 62600000 reads so far
2011-05-19 22:47:42,102 - INFO - Processed 62700000 reads so far
2011-05-19 22:47:49,909 - INFO - Processed 62800000 reads so far
2011-05-19 22:48:01,322 - INFO - Processed 62900000 reads so far
2011-05-19 22:48:13,671 - INFO - Processed 63000000 reads so far
2011-05-19 22:48:24,889 - INFO - Processed 63100000 reads so far
2011-05-19 22:48:35,960 - INFO - Processed 63200000 reads so far
2011-05-19 22:48:47,023 - INFO - Processed 63300000 reads so far
2011-05-19 22:48:56,676 - INFO - Processed 63400000 reads so far
2011-05-19 22:49:06,616 - INFO - Processed 63500000 reads so far
2011-05-19 22:49:10,089 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:22990143-43010143
2011-05-19 22:49:17,545 - INFO - Processed 63600000 reads so far
2011-05-19 22:49:32,295 - INFO - Processed 63700000 reads so far
2011-05-19 22:49:44,974 - INFO - Processed 63800000 reads so far
2011-05-19 22:49:56,186 - INFO - Processed 63900000 reads so far
2011-05-19 22:50:05,066 - INFO - Processed 64000000 reads so far
2011-05-19 22:50:15,836 - INFO - Processed 64100000 reads so far
2011-05-19 22:50:24,631 - INFO - Processed 64200000 reads so far
2011-05-19 22:50:35,879 - INFO - Processed 64300000 reads so far
2011-05-19 22:50:46,845 - INFO - Processed 64400000 reads so far
2011-05-19 22:50:56,965 - INFO - Processed 64500000 reads so far
2011-05-19 22:51:05,852 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:42990194-63010194
2011-05-19 22:51:08,680 - INFO - Processed 64600000 reads so far
2011-05-19 22:51:19,311 - INFO - Processed 64700000 reads so far
2011-05-19 22:51:29,210 - INFO - Processed 64800000 reads so far
2011-05-19 22:51:41,466 - INFO - Processed 64900000 reads so far
2011-05-19 22:51:50,747 - INFO - Processed 65000000 reads so far
2011-05-19 22:52:02,446 - INFO - Processed 65100000 reads so far
2011-05-19 22:52:10,709 - INFO - Processed 65200000 reads so far
2011-05-19 22:52:19,528 - INFO - Processed 65300000 reads so far
2011-05-19 22:52:27,658 - INFO - Processed 65400000 reads so far
2011-05-19 22:52:38,826 - INFO - Processed 65500000 reads so far
2011-05-19 22:52:43,722 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:62990266-83010266
2011-05-19 22:52:51,546 - INFO - Processed 65600000 reads so far
2011-05-19 22:53:05,471 - INFO - Processed 65700000 reads so far
2011-05-19 22:53:16,799 - INFO - Processed 65800000 reads so far
2011-05-19 22:53:28,647 - INFO - Processed 65900000 reads so far
2011-05-19 22:53:39,142 - INFO - Processed 66000000 reads so far
2011-05-19 22:53:50,379 - INFO - Processed 66100000 reads so far
2011-05-19 22:54:02,246 - INFO - Processed 66200000 reads so far
2011-05-19 22:54:13,057 - INFO - Processed 66300000 reads so far
2011-05-19 22:54:24,106 - INFO - Processed 66400000 reads so far
2011-05-19 22:54:36,488 - INFO - Processed 66500000 reads so far
2011-05-19 22:54:42,046 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:82990306-103010306
2011-05-19 22:54:48,076 - INFO - Processed 66600000 reads so far
2011-05-19 22:55:00,174 - INFO - Processed 66700000 reads so far
2011-05-19 22:55:12,727 - INFO - Processed 66800000 reads so far
2011-05-19 22:55:24,602 - INFO - Processed 66900000 reads so far
2011-05-19 22:55:34,510 - INFO - Processed 67000000 reads so far
2011-05-19 22:55:44,679 - INFO - Processed 67100000 reads so far
2011-05-19 22:55:54,828 - INFO - Processed 67200000 reads so far
2011-05-19 22:56:03,136 - INFO - Processed 67300000 reads so far
2011-05-19 22:56:12,029 - INFO - Processed 67400000 reads so far
2011-05-19 22:56:20,002 - INFO - Processed 67500000 reads so far
2011-05-19 22:56:28,362 - INFO - Processed 67600000 reads so far
2011-05-19 22:56:36,740 - INFO - Processed 67700000 reads so far
2011-05-19 22:56:45,942 - INFO - Processed 67800000 reads so far
2011-05-19 22:56:53,971 - INFO - Processed 67900000 reads so far
2011-05-19 22:57:04,276 - INFO - Processed 68000000 reads so far
2011-05-19 22:57:12,033 - INFO - Processed 68100000 reads so far
2011-05-19 22:57:21,501 - INFO - Processed 68200000 reads so far
2011-05-19 22:57:31,415 - INFO - Processed 68300000 reads so far
2011-05-19 22:57:40,053 - INFO - Processed 68400000 reads so far
2011-05-19 22:57:49,562 - INFO - Processed 68500000 reads so far
2011-05-19 22:57:58,879 - INFO - Processed 68600000 reads so far
2011-05-19 22:58:08,985 - INFO - Processed 68700000 reads so far
2011-05-19 22:58:16,992 - INFO - Processed 68800000 reads so far
2011-05-19 22:58:25,887 - INFO - Processed 68900000 reads so far
2011-05-19 22:58:36,095 - INFO - Processed 69000000 reads so far
2011-05-19 22:58:43,785 - INFO - Processed 69100000 reads so far
2011-05-19 22:58:52,564 - INFO - Processed 69200000 reads so far
2011-05-19 22:59:00,257 - INFO - Processed 69300000 reads so far
2011-05-19 22:59:09,965 - INFO - Processed 69400000 reads so far
2011-05-19 22:59:19,234 - INFO - Processed 69500000 reads so far
2011-05-19 22:59:27,547 - INFO - Processed 69600000 reads so far
2011-05-19 22:59:35,153 - INFO - Processed 69700000 reads so far
2011-05-19 22:59:45,241 - INFO - Processed 69800000 reads so far
2011-05-19 22:59:53,487 - INFO - Processed 69900000 reads so far
2011-05-19 23:00:01,850 - INFO - Processed 70000000 reads so far
2011-05-19 23:00:10,535 - INFO - Processed 70100000 reads so far
2011-05-19 23:00:17,253 - INFO - Processed 70200000 reads so far
2011-05-19 23:00:25,382 - INFO - Processed 70300000 reads so far
2011-05-19 23:00:32,530 - INFO - Processed 70400000 reads so far
2011-05-19 23:00:39,490 - INFO - Processed 70500000 reads so far
2011-05-19 23:00:47,916 - INFO - Processed 70600000 reads so far
2011-05-19 23:00:57,017 - INFO - Processed 70700000 reads so far
2011-05-19 23:01:05,410 - INFO - Processed 70800000 reads so far
2011-05-19 23:01:12,675 - INFO - Processed 70900000 reads so far
2011-05-19 23:01:21,379 - INFO - Processed 71000000 reads so far
2011-05-19 23:01:34,460 - INFO - Processed 71100000 reads so far
2011-05-19 23:01:41,510 - INFO - Processed 71200000 reads so far
2011-05-19 23:01:50,922 - INFO - Processed 71300000 reads so far
2011-05-19 23:01:57,877 - INFO - Processed 71400000 reads so far
2011-05-19 23:02:03,860 - INFO - Processed 71500000 reads so far
2011-05-19 23:02:09,581 - INFO - Processed 71600000 reads so far
2011-05-19 23:02:17,514 - INFO - Processed 71700000 reads so far
2011-05-19 23:02:25,740 - INFO - Processed 71800000 reads so far
2011-05-19 23:02:32,309 - INFO - Processed 71900000 reads so far
2011-05-19 23:02:39,691 - INFO - Processed 72000000 reads so far
2011-05-19 23:02:47,179 - INFO - Processed 72100000 reads so far
2011-05-19 23:02:57,353 - INFO - Processed 72200000 reads so far
2011-05-19 23:03:06,129 - INFO - Processed 72300000 reads so far
2011-05-19 23:03:12,249 - INFO - Processed 72400000 reads so far
2011-05-19 23:03:22,062 - INFO - Processed 72500000 reads so far
2011-05-19 23:03:31,488 - INFO - Processed 72600000 reads so far
2011-05-19 23:03:42,367 - INFO - Processed 72700000 reads so far
2011-05-19 23:03:49,558 - INFO - Processed 72800000 reads so far
2011-05-19 23:03:57,830 - INFO - Processed 72900000 reads so far
2011-05-19 23:04:09,246 - INFO - Processed 73000000 reads so far
2011-05-19 23:04:18,734 - INFO - Processed 73100000 reads so far
2011-05-19 23:04:26,683 - INFO - Processed 73200000 reads so far
2011-05-19 23:04:37,103 - INFO - Processed 73300000 reads so far
2011-05-19 23:04:44,744 - INFO - Processed 73400000 reads so far
2011-05-19 23:04:53,318 - INFO - Processed 73500000 reads so far
2011-05-19 23:05:01,589 - INFO - Processed 73600000 reads so far
2011-05-19 23:05:08,998 - INFO - Processed 73700000 reads so far
2011-05-19 23:05:17,187 - INFO - Processed 73800000 reads so far
2011-05-19 23:05:25,790 - INFO - Processed 73900000 reads so far
2011-05-19 23:05:33,172 - INFO - Processed 74000000 reads so far
2011-05-19 23:05:42,506 - INFO - Processed 74100000 reads so far
2011-05-19 23:05:51,702 - INFO - Processed 74200000 reads so far
2011-05-19 23:06:02,773 - INFO - Processed 74300000 reads so far
2011-05-19 23:06:12,218 - INFO - Processed 74400000 reads so far
2011-05-19 23:06:23,323 - INFO - Processed 74500000 reads so far
2011-05-19 23:06:32,081 - INFO - Processed 74600000 reads so far
2011-05-19 23:06:40,161 - INFO - Processed 74700000 reads so far
2011-05-19 23:06:48,666 - INFO - Processed 74800000 reads so far
2011-05-19 23:06:57,939 - INFO - Processed 74900000 reads so far
2011-05-19 23:07:05,957 - INFO - Processed 75000000 reads so far
2011-05-19 23:07:13,982 - INFO - Processed 75100000 reads so far
2011-05-19 23:07:21,681 - INFO - Processed 75200000 reads so far
2011-05-19 23:07:28,799 - INFO - Processed 75300000 reads so far
2011-05-19 23:07:37,918 - INFO - Processed 75400000 reads so far
2011-05-19 23:07:46,050 - INFO - Processed 75500000 reads so far
2011-05-19 23:07:52,857 - INFO - Processed 75600000 reads so far
2011-05-19 23:08:01,596 - INFO - Processed 75700000 reads so far
2011-05-19 23:08:12,160 - INFO - Processed 75800000 reads so far
2011-05-19 23:08:21,837 - INFO - Processed 75900000 reads so far
2011-05-19 23:08:30,360 - INFO - Processed 76000000 reads so far
2011-05-19 23:08:39,408 - INFO - Processed 76100000 reads so far
2011-05-19 23:08:49,213 - INFO - Processed 76200000 reads so far
2011-05-19 23:08:58,279 - INFO - Processed 76300000 reads so far
2011-05-19 23:09:07,076 - INFO - Processed 76400000 reads so far
2011-05-19 23:09:15,975 - INFO - Processed 76500000 reads so far
2011-05-19 23:09:24,380 - INFO - Processed 76600000 reads so far
2011-05-19 23:09:33,304 - INFO - Processed 76700000 reads so far
2011-05-19 23:09:42,632 - INFO - Processed 76800000 reads so far
2011-05-19 23:09:53,035 - INFO - Processed 76900000 reads so far
2011-05-19 23:10:00,653 - INFO - Processed 77000000 reads so far
2011-05-19 23:10:09,754 - INFO - Processed 77100000 reads so far
2011-05-19 23:10:18,946 - INFO - Processed 77200000 reads so far
2011-05-19 23:10:28,874 - INFO - Processed 77300000 reads so far
2011-05-19 23:10:37,057 - INFO - Processed 77400000 reads so far
2011-05-19 23:10:47,751 - INFO - Processed 77500000 reads so far
2011-05-19 23:10:59,197 - INFO - Processed 77600000 reads so far
2011-05-19 23:11:06,404 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:102990314-123010314
2011-05-19 23:11:11,208 - INFO - Processed 77700000 reads so far
2011-05-19 23:11:23,069 - INFO - Processed 77800000 reads so far
2011-05-19 23:11:34,264 - INFO - Processed 77900000 reads so far
2011-05-19 23:11:45,061 - INFO - Processed 78000000 reads so far
2011-05-19 23:11:55,860 - INFO - Processed 78100000 reads so far
2011-05-19 23:12:05,246 - INFO - Processed 78200000 reads so far
2011-05-19 23:12:14,863 - INFO - Processed 78300000 reads so far
2011-05-19 23:12:22,873 - INFO - Processed 78400000 reads so far
2011-05-19 23:12:34,232 - INFO - Processed 78500000 reads so far
2011-05-19 23:12:48,355 - INFO - Processed 78600000 reads so far
2011-05-19 23:12:54,345 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:122990329-143010329
2011-05-19 23:12:59,075 - INFO - Processed 78700000 reads so far
2011-05-19 23:13:08,739 - INFO - Processed 78800000 reads so far
2011-05-19 23:13:19,142 - INFO - Processed 78900000 reads so far
2011-05-19 23:13:27,464 - INFO - Processed 79000000 reads so far
2011-05-19 23:13:37,176 - INFO - Processed 79100000 reads so far
2011-05-19 23:13:46,522 - INFO - Processed 79200000 reads so far
2011-05-19 23:13:55,207 - INFO - Processed 79300000 reads so far
2011-05-19 23:14:04,206 - INFO - Processed 79400000 reads so far
2011-05-19 23:14:16,519 - INFO - Processed 79500000 reads so far
2011-05-19 23:14:26,234 - INFO - Processed 79600000 reads so far
2011-05-19 23:14:33,885 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:142990339-163010339
2011-05-19 23:14:36,752 - INFO - Processed 79700000 reads so far
2011-05-19 23:14:46,846 - INFO - Processed 79800000 reads so far
2011-05-19 23:14:57,451 - INFO - Processed 79900000 reads so far
2011-05-19 23:15:07,902 - INFO - Processed 80000000 reads so far
2011-05-19 23:15:16,181 - INFO - Processed 80100000 reads so far
2011-05-19 23:15:27,555 - INFO - Processed 80200000 reads so far
2011-05-19 23:15:37,796 - INFO - Processed 80300000 reads so far
2011-05-19 23:15:50,912 - INFO - Processed 80400000 reads so far
2011-05-19 23:16:00,481 - INFO - Processed 80500000 reads so far
2011-05-19 23:16:09,317 - INFO - Processed 80600000 reads so far
2011-05-19 23:16:20,164 - INFO - Processed 80700000 reads so far
2011-05-19 23:16:26,682 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:162990346-183010346
2011-05-19 23:16:36,684 - INFO - Processed 80800000 reads so far
2011-05-19 23:16:47,561 - INFO - Processed 80900000 reads so far
2011-05-19 23:16:56,548 - INFO - Processed 81000000 reads so far
2011-05-19 23:17:09,649 - INFO - Processed 81100000 reads so far
2011-05-19 23:17:22,215 - INFO - Processed 81200000 reads so far
2011-05-19 23:17:31,677 - INFO - Processed 81300000 reads so far
2011-05-19 23:17:44,830 - INFO - Processed 81400000 reads so far
2011-05-19 23:17:56,084 - INFO - Processed 81500000 reads so far
2011-05-19 23:18:05,981 - INFO - Processed 81600000 reads so far
2011-05-19 23:18:17,664 - INFO - Processed 81700000 reads so far
2011-05-19 23:18:23,348 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:2989999-23009999
2011-05-19 23:18:25,556 - INFO - Processed 81800000 reads so far
2011-05-19 23:18:35,527 - INFO - Processed 81900000 reads so far
2011-05-19 23:18:59,990 - INFO - Processed 82000000 reads so far
2011-05-19 23:19:09,390 - INFO - Processed 82100000 reads so far
2011-05-19 23:19:20,234 - INFO - Processed 82200000 reads so far
2011-05-19 23:19:30,851 - INFO - Processed 82300000 reads so far
2011-05-19 23:19:42,160 - INFO - Processed 82400000 reads so far
2011-05-19 23:19:51,168 - INFO - Processed 82500000 reads so far
2011-05-19 23:20:03,490 - INFO - Processed 82600000 reads so far
2011-05-19 23:20:13,902 - INFO - Processed 82700000 reads so far
2011-05-19 23:20:19,166 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:22990008-43010008
2011-05-19 23:20:24,164 - INFO - Processed 82800000 reads so far
2011-05-19 23:20:33,931 - INFO - Processed 82900000 reads so far
2011-05-19 23:20:43,647 - INFO - Processed 83000000 reads so far
2011-05-19 23:20:53,048 - INFO - Processed 83100000 reads so far
2011-05-19 23:21:04,765 - INFO - Processed 83200000 reads so far
2011-05-19 23:21:15,892 - INFO - Processed 83300000 reads so far
2011-05-19 23:21:25,695 - INFO - Processed 83400000 reads so far
2011-05-19 23:21:35,900 - INFO - Processed 83500000 reads so far
2011-05-19 23:21:47,093 - INFO - Processed 83600000 reads so far
2011-05-19 23:21:57,131 - INFO - Processed 83700000 reads so far
2011-05-19 23:22:02,883 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:42990017-63010017
2011-05-19 23:22:06,855 - INFO - Processed 83800000 reads so far
2011-05-19 23:22:16,926 - INFO - Processed 83900000 reads so far
2011-05-19 23:22:29,401 - INFO - Processed 84000000 reads so far
2011-05-19 23:22:40,017 - INFO - Processed 84100000 reads so far
2011-05-19 23:22:51,523 - INFO - Processed 84200000 reads so far
2011-05-19 23:23:02,762 - INFO - Processed 84300000 reads so far
2011-05-19 23:23:15,308 - INFO - Processed 84400000 reads so far
2011-05-19 23:23:26,697 - INFO - Processed 84500000 reads so far
2011-05-19 23:23:38,238 - INFO - Processed 84600000 reads so far
2011-05-19 23:23:49,507 - INFO - Processed 84700000 reads so far
2011-05-19 23:23:50,803 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:62990025-83010025
2011-05-19 23:24:00,773 - INFO - Processed 84800000 reads so far
2011-05-19 23:24:12,707 - INFO - Processed 84900000 reads so far
2011-05-19 23:24:24,669 - INFO - Processed 85000000 reads so far
2011-05-19 23:24:36,205 - INFO - Processed 85100000 reads so far
2011-05-19 23:24:47,333 - INFO - Processed 85200000 reads so far
2011-05-19 23:25:00,288 - INFO - Processed 85300000 reads so far
2011-05-19 23:25:12,206 - INFO - Processed 85400000 reads so far
2011-05-19 23:25:33,988 - INFO - Processed 85500000 reads so far
2011-05-19 23:25:45,434 - INFO - Processed 85600000 reads so far
2011-05-19 23:25:53,992 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:82990045-103010045
2011-05-19 23:25:56,856 - INFO - Processed 85700000 reads so far
2011-05-19 23:26:08,704 - INFO - Processed 85800000 reads so far
2011-05-19 23:26:20,577 - INFO - Processed 85900000 reads so far
2011-05-19 23:26:32,483 - INFO - Processed 86000000 reads so far
2011-05-19 23:26:44,099 - INFO - Processed 86100000 reads so far
2011-05-19 23:26:55,165 - INFO - Processed 86200000 reads so far
2011-05-19 23:27:06,728 - INFO - Processed 86300000 reads so far
2011-05-19 23:27:17,919 - INFO - Processed 86400000 reads so far
2011-05-19 23:27:27,683 - INFO - Processed 86500000 reads so far
2011-05-19 23:27:38,544 - INFO - Processed 86600000 reads so far
2011-05-19 23:27:50,424 - INFO - Processed 86700000 reads so far
2011-05-19 23:27:50,750 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:102990051-123010051
2011-05-19 23:28:02,961 - INFO - Processed 86800000 reads so far
2011-05-19 23:28:14,316 - INFO - Processed 86900000 reads so far
2011-05-19 23:28:25,682 - INFO - Processed 87000000 reads so far
2011-05-19 23:28:37,103 - INFO - Processed 87100000 reads so far
2011-05-19 23:28:49,074 - INFO - Processed 87200000 reads so far
2011-05-19 23:28:59,340 - INFO - Processed 87300000 reads so far
2011-05-19 23:29:08,581 - INFO - Processed 87400000 reads so far
2011-05-19 23:29:16,758 - INFO - Processed 87500000 reads so far
2011-05-19 23:29:25,849 - INFO - Processed 87600000 reads so far
2011-05-19 23:29:34,311 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:122990058-143010058
2011-05-19 23:29:35,373 - INFO - Processed 87700000 reads so far
2011-05-19 23:29:44,800 - INFO - Processed 87800000 reads so far
2011-05-19 23:29:53,592 - INFO - Processed 87900000 reads so far
2011-05-19 23:30:02,936 - INFO - Processed 88000000 reads so far
2011-05-19 23:30:14,393 - INFO - Processed 88100000 reads so far
2011-05-19 23:30:26,733 - INFO - Processed 88200000 reads so far
2011-05-19 23:30:36,753 - INFO - Processed 88300000 reads so far
2011-05-19 23:30:47,016 - INFO - Processed 88400000 reads so far
2011-05-19 23:30:56,280 - INFO - Processed 88500000 reads so far
2011-05-19 23:31:07,261 - INFO - Processed 88600000 reads so far
2011-05-19 23:31:15,365 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:142990059-163010059
2011-05-19 23:31:17,480 - INFO - Processed 88700000 reads so far
2011-05-19 23:31:29,729 - INFO - Processed 88800000 reads so far
2011-05-19 23:31:41,436 - INFO - Processed 88900000 reads so far
2011-05-19 23:31:54,217 - INFO - Processed 89000000 reads so far
2011-05-19 23:32:03,438 - INFO - Processed 89100000 reads so far
2011-05-19 23:32:14,206 - INFO - Processed 89200000 reads so far
2011-05-19 23:32:24,786 - INFO - Processed 89300000 reads so far
2011-05-19 23:32:35,518 - INFO - Processed 89400000 reads so far
2011-05-19 23:32:44,455 - INFO - Processed 89500000 reads so far
2011-05-19 23:32:47,891 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3_random:0-20010015
2011-05-19 23:32:48,021 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:2990013-23010013
2011-05-19 23:32:54,312 - INFO - Processed 89600000 reads so far
2011-05-19 23:33:03,445 - INFO - Processed 89700000 reads so far
2011-05-19 23:33:13,683 - INFO - Processed 89800000 reads so far
2011-05-19 23:33:26,623 - INFO - Processed 89900000 reads so far
2011-05-19 23:33:37,607 - INFO - Processed 90000000 reads so far
2011-05-19 23:33:48,283 - INFO - Processed 90100000 reads so far
2011-05-19 23:33:57,947 - INFO - Processed 90200000 reads so far
2011-05-19 23:34:06,463 - INFO - Processed 90300000 reads so far
2011-05-19 23:34:18,389 - INFO - Processed 90400000 reads so far
2011-05-19 23:34:29,073 - INFO - Processed 90500000 reads so far
2011-05-19 23:34:33,902 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:22990040-43010040
2011-05-19 23:34:40,605 - INFO - Processed 90600000 reads so far
2011-05-19 23:34:53,859 - INFO - Processed 90700000 reads so far
2011-05-19 23:35:04,173 - INFO - Processed 90800000 reads so far
2011-05-19 23:35:14,965 - INFO - Processed 90900000 reads so far
2011-05-19 23:35:25,051 - INFO - Processed 91000000 reads so far
2011-05-19 23:35:35,117 - INFO - Processed 91100000 reads so far
2011-05-19 23:35:44,998 - INFO - Processed 91200000 reads so far
2011-05-19 23:35:53,828 - INFO - Processed 91300000 reads so far
2011-05-19 23:36:02,213 - INFO - Processed 91400000 reads so far
2011-05-19 23:36:07,840 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:42990044-63010044
2011-05-19 23:36:10,731 - INFO - Processed 91500000 reads so far
2011-05-19 23:36:18,984 - INFO - Processed 91600000 reads so far
2011-05-19 23:36:29,559 - INFO - Processed 91700000 reads so far
2011-05-19 23:36:37,099 - INFO - Processed 91800000 reads so far
2011-05-19 23:36:48,977 - INFO - Processed 91900000 reads so far
2011-05-19 23:37:00,539 - INFO - Processed 92000000 reads so far
2011-05-19 23:37:12,262 - INFO - Processed 92100000 reads so far
2011-05-19 23:37:20,417 - INFO - Processed 92200000 reads so far
2011-05-19 23:37:27,280 - INFO - Processed 92300000 reads so far
2011-05-19 23:37:39,117 - INFO - Processed 92400000 reads so far
2011-05-19 23:37:50,098 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:62990052-83010052
2011-05-19 23:37:50,361 - INFO - Processed 92500000 reads so far
2011-05-19 23:38:01,503 - INFO - Processed 92600000 reads so far
2011-05-19 23:38:17,376 - INFO - Processed 92700000 reads so far
2011-05-19 23:38:28,152 - INFO - Processed 92800000 reads so far
2011-05-19 23:38:38,286 - INFO - Processed 92900000 reads so far
2011-05-19 23:38:48,340 - INFO - Processed 93000000 reads so far
2011-05-19 23:39:20,652 - INFO - Processed 93100000 reads so far
2011-05-19 23:39:42,954 - INFO - Processed 93200000 reads so far
2011-05-19 23:39:51,650 - INFO - Processed 93300000 reads so far
2011-05-19 23:39:59,644 - INFO - Processed 93400000 reads so far
2011-05-19 23:40:08,978 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:82990063-103010063
2011-05-19 23:40:11,717 - INFO - Processed 93500000 reads so far
2011-05-19 23:40:21,386 - INFO - Processed 93600000 reads so far
2011-05-19 23:40:30,540 - INFO - Processed 93700000 reads so far
2011-05-19 23:40:39,296 - INFO - Processed 93800000 reads so far
2011-05-19 23:40:50,747 - INFO - Processed 93900000 reads so far
2011-05-19 23:41:00,055 - INFO - Processed 94000000 reads so far
2011-05-19 23:41:10,990 - INFO - Processed 94100000 reads so far
2011-05-19 23:41:21,153 - INFO - Processed 94200000 reads so far
2011-05-19 23:41:29,954 - INFO - Processed 94300000 reads so far
2011-05-19 23:41:39,061 - INFO - Processed 94400000 reads so far
2011-05-19 23:41:45,865 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:102990071-123010071
2011-05-19 23:41:47,403 - INFO - Processed 94500000 reads so far
2011-05-19 23:41:58,479 - INFO - Processed 94600000 reads so far
2011-05-19 23:42:09,407 - INFO - Processed 94700000 reads so far
2011-05-19 23:42:18,098 - INFO - Processed 94800000 reads so far
2011-05-19 23:42:27,755 - INFO - Processed 94900000 reads so far
2011-05-19 23:42:36,416 - INFO - Processed 95000000 reads so far
2011-05-19 23:42:46,679 - INFO - Processed 95100000 reads so far
2011-05-19 23:42:55,227 - INFO - Processed 95200000 reads so far
2011-05-19 23:43:05,018 - INFO - Processed 95300000 reads so far
2011-05-19 23:43:15,733 - INFO - Processed 95400000 reads so far
2011-05-19 23:43:16,945 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:122990073-143010073
2011-05-19 23:43:24,176 - INFO - Processed 95500000 reads so far
2011-05-19 23:43:32,987 - INFO - Processed 95600000 reads so far
2011-05-19 23:43:44,923 - INFO - Processed 95700000 reads so far
2011-05-19 23:43:54,887 - INFO - Processed 95800000 reads so far
2011-05-19 23:44:05,522 - INFO - Processed 95900000 reads so far
2011-05-19 23:44:17,738 - INFO - Processed 96000000 reads so far
2011-05-19 23:44:27,058 - INFO - Processed 96100000 reads so far
2011-05-19 23:44:39,230 - INFO - Processed 96200000 reads so far
2011-05-19 23:44:53,116 - INFO - Processed 96300000 reads so far
2011-05-19 23:45:04,501 - INFO - Processed 96400000 reads so far
2011-05-19 23:45:10,836 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:142990127-163010127
2011-05-19 23:45:15,146 - INFO - Processed 96500000 reads so far
2011-05-19 23:45:26,595 - INFO - Processed 96600000 reads so far
2011-05-19 23:45:38,545 - INFO - Processed 96700000 reads so far
2011-05-19 23:45:49,100 - INFO - Processed 96800000 reads so far
2011-05-19 23:46:02,209 - INFO - Processed 96900000 reads so far
2011-05-19 23:46:12,288 - INFO - Processed 97000000 reads so far
2011-05-19 23:46:25,021 - INFO - Processed 97100000 reads so far
2011-05-19 23:46:40,008 - INFO - Processed 97200000 reads so far
2011-05-19 23:46:49,911 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4_random:0-20010056
2011-05-19 23:46:50,360 - INFO - Processed 97300000 reads so far
2011-05-19 23:46:50,551 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:2990014-23010014
2011-05-19 23:47:01,956 - INFO - Processed 97400000 reads so far
2011-05-19 23:47:14,984 - INFO - Processed 97500000 reads so far
2011-05-19 23:47:25,528 - INFO - Processed 97600000 reads so far
2011-05-19 23:47:36,846 - INFO - Processed 97700000 reads so far
2011-05-19 23:47:47,344 - INFO - Processed 97800000 reads so far
2011-05-19 23:47:59,480 - INFO - Processed 97900000 reads so far
2011-05-19 23:48:11,228 - INFO - Processed 98000000 reads so far
2011-05-19 23:48:43,558 - INFO - Processed 98100000 reads so far
2011-05-19 23:48:56,884 - INFO - Processed 98200000 reads so far
2011-05-19 23:49:08,621 - INFO - Processed 98300000 reads so far
2011-05-19 23:49:10,082 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:22990031-43010031
2011-05-19 23:49:20,275 - INFO - Processed 98400000 reads so far
2011-05-19 23:49:34,214 - INFO - Processed 98500000 reads so far
2011-05-19 23:49:44,693 - INFO - Processed 98600000 reads so far
2011-05-19 23:49:54,048 - INFO - Processed 98700000 reads so far
2011-05-19 23:50:06,647 - INFO - Processed 98800000 reads so far
2011-05-19 23:50:17,370 - INFO - Processed 98900000 reads so far
2011-05-19 23:50:26,498 - INFO - Processed 99000000 reads so far
2011-05-19 23:50:36,828 - INFO - Processed 99100000 reads so far
2011-05-19 23:50:48,413 - INFO - Processed 99200000 reads so far
2011-05-19 23:51:00,219 - INFO - Processed 99300000 reads so far
2011-05-19 23:51:05,069 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:42990042-63010042
2011-05-19 23:51:12,115 - INFO - Processed 99400000 reads so far
2011-05-19 23:51:26,965 - INFO - Processed 99500000 reads so far
2011-05-19 23:51:39,531 - INFO - Processed 99600000 reads so far
2011-05-19 23:51:53,528 - INFO - Processed 99700000 reads so far
2011-05-19 23:52:07,835 - INFO - Processed 99800000 reads so far
2011-05-19 23:52:19,912 - INFO - Processed 99900000 reads so far
2011-05-19 23:52:31,378 - INFO - Processed 100000000 reads so far
2011-05-19 23:52:43,796 - INFO - Processed 100100000 reads so far
2011-05-19 23:52:55,671 - INFO - Processed 100200000 reads so far
2011-05-19 23:53:06,748 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:62990049-83010049
2011-05-19 23:53:07,129 - INFO - Processed 100300000 reads so far
2011-05-19 23:53:18,154 - INFO - Processed 100400000 reads so far
2011-05-19 23:53:29,768 - INFO - Processed 100500000 reads so far
2011-05-19 23:53:39,241 - INFO - Processed 100600000 reads so far
2011-05-19 23:53:49,468 - INFO - Processed 100700000 reads so far
2011-05-19 23:54:01,315 - INFO - Processed 100800000 reads so far
2011-05-19 23:54:11,211 - INFO - Processed 100900000 reads so far
2011-05-19 23:54:21,005 - INFO - Processed 101000000 reads so far
2011-05-19 23:54:31,528 - INFO - Processed 101100000 reads so far
2011-05-19 23:54:40,036 - INFO - Processed 101200000 reads so far
2011-05-19 23:54:48,379 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:82990058-103010058
2011-05-19 23:54:51,469 - INFO - Processed 101300000 reads so far
2011-05-19 23:55:01,295 - INFO - Processed 101400000 reads so far
2011-05-19 23:55:10,930 - INFO - Processed 101500000 reads so far
2011-05-19 23:55:20,921 - INFO - Processed 101600000 reads so far
2011-05-19 23:55:39,354 - INFO - Processed 101700000 reads so far
2011-05-19 23:56:03,053 - INFO - Processed 101800000 reads so far
2011-05-19 23:56:15,370 - INFO - Processed 101900000 reads so far
2011-05-19 23:56:28,066 - INFO - Processed 102000000 reads so far
2011-05-19 23:56:40,580 - INFO - Processed 102100000 reads so far
2011-05-19 23:56:52,161 - INFO - Processed 102200000 reads so far
2011-05-19 23:56:52,644 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:102990075-123010075
2011-05-19 23:57:02,456 - INFO - Processed 102300000 reads so far
2011-05-19 23:57:14,709 - INFO - Processed 102400000 reads so far
2011-05-19 23:57:28,303 - INFO - Processed 102500000 reads so far
2011-05-19 23:57:41,275 - INFO - Processed 102600000 reads so far
2011-05-19 23:57:52,855 - INFO - Processed 102700000 reads so far
2011-05-19 23:58:04,394 - INFO - Processed 102800000 reads so far
2011-05-19 23:58:17,798 - INFO - Processed 102900000 reads so far
2011-05-19 23:58:29,824 - INFO - Processed 103000000 reads so far
2011-05-19 23:58:44,016 - INFO - Processed 103100000 reads so far
2011-05-19 23:58:56,006 - INFO - Processed 103200000 reads so far
2011-05-19 23:59:05,031 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:122990080-143010080
2011-05-19 23:59:08,090 - INFO - Processed 103300000 reads so far
2011-05-19 23:59:19,872 - INFO - Processed 103400000 reads so far
2011-05-19 23:59:31,535 - INFO - Processed 103500000 reads so far
2011-05-19 23:59:44,643 - INFO - Processed 103600000 reads so far
2011-05-19 23:59:56,789 - INFO - Processed 103700000 reads so far
2011-05-20 00:00:08,923 - INFO - Processed 103800000 reads so far
2011-05-20 00:00:20,658 - INFO - Processed 103900000 reads so far
2011-05-20 00:00:34,410 - INFO - Processed 104000000 reads so far
2011-05-20 00:00:45,531 - INFO - Processed 104100000 reads so far
2011-05-20 00:00:55,160 - INFO - Processed 104200000 reads so far
2011-05-20 00:01:03,408 - INFO - Processed 104300000 reads so far
2011-05-20 00:01:06,251 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:142990094-163010094
2011-05-20 00:01:13,753 - INFO - Processed 104400000 reads so far
2011-05-20 00:01:22,696 - INFO - Processed 104500000 reads so far
2011-05-20 00:01:36,796 - INFO - Processed 104600000 reads so far
2011-05-20 00:01:45,433 - INFO - Processed 104700000 reads so far
2011-05-20 00:01:56,895 - INFO - Processed 104800000 reads so far
2011-05-20 00:01:57,679 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5_random:0-20010098
2011-05-20 00:01:57,901 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:2990037-23010037
2011-05-20 00:02:05,067 - INFO - Processed 104900000 reads so far
2011-05-20 00:02:14,562 - INFO - Processed 105000000 reads so far
2011-05-20 00:02:23,493 - INFO - Processed 105100000 reads so far
2011-05-20 00:02:32,207 - INFO - Processed 105200000 reads so far
2011-05-20 00:02:41,015 - INFO - Processed 105300000 reads so far
2011-05-20 00:02:50,431 - INFO - Processed 105400000 reads so far
2011-05-20 00:02:59,252 - INFO - Processed 105500000 reads so far
2011-05-20 00:03:09,914 - INFO - Processed 105600000 reads so far
2011-05-20 00:03:19,581 - INFO - Processed 105700000 reads so far
2011-05-20 00:03:29,020 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:22990046-43010046
2011-05-20 00:03:32,056 - INFO - Processed 105800000 reads so far
2011-05-20 00:04:01,917 - INFO - Processed 105900000 reads so far
2011-05-20 00:04:25,366 - INFO - Processed 106000000 reads so far
2011-05-20 00:04:37,435 - INFO - Processed 106100000 reads so far
2011-05-20 00:04:47,380 - INFO - Processed 106200000 reads so far
2011-05-20 00:04:58,779 - INFO - Processed 106300000 reads so far
2011-05-20 00:05:12,758 - INFO - Processed 106400000 reads so far
2011-05-20 00:05:24,243 - INFO - Processed 106500000 reads so far
2011-05-20 00:05:40,641 - INFO - Processed 106600000 reads so far
2011-05-20 00:05:53,670 - INFO - Processed 106700000 reads so far
2011-05-20 00:06:10,538 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:42990065-63010065
2011-05-20 00:06:12,413 - INFO - Processed 106800000 reads so far
2011-05-20 00:06:24,094 - INFO - Processed 106900000 reads so far
2011-05-20 00:06:37,262 - INFO - Processed 107000000 reads so far
2011-05-20 00:06:51,894 - INFO - Processed 107100000 reads so far
2011-05-20 00:07:03,436 - INFO - Processed 107200000 reads so far
2011-05-20 00:07:14,244 - INFO - Processed 107300000 reads so far
2011-05-20 00:07:27,092 - INFO - Processed 107400000 reads so far
2011-05-20 00:07:36,147 - INFO - Processed 107500000 reads so far
2011-05-20 00:07:45,082 - INFO - Processed 107600000 reads so far
2011-05-20 00:07:58,034 - INFO - Processed 107700000 reads so far
2011-05-20 00:08:07,399 - INFO - Processed 107800000 reads so far
2011-05-20 00:08:13,263 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:62990116-83010116
2011-05-20 00:08:20,382 - INFO - Processed 107900000 reads so far
2011-05-20 00:08:32,841 - INFO - Processed 108000000 reads so far
2011-05-20 00:08:42,946 - INFO - Processed 108100000 reads so far
2011-05-20 00:08:54,036 - INFO - Processed 108200000 reads so far
2011-05-20 00:09:07,838 - INFO - Processed 108300000 reads so far
2011-05-20 00:09:20,334 - INFO - Processed 108400000 reads so far
2011-05-20 00:09:31,748 - INFO - Processed 108500000 reads so far
2011-05-20 00:09:44,592 - INFO - Processed 108600000 reads so far
2011-05-20 00:09:56,201 - INFO - Processed 108700000 reads so far
2011-05-20 00:10:08,481 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:82990119-103010119
2011-05-20 00:10:08,873 - INFO - Processed 108800000 reads so far
2011-05-20 00:10:29,156 - INFO - Processed 108900000 reads so far
2011-05-20 00:10:57,359 - INFO - Processed 109000000 reads so far
2011-05-20 00:11:09,228 - INFO - Processed 109100000 reads so far
2011-05-20 00:11:23,929 - INFO - Processed 109200000 reads so far
2011-05-20 00:11:35,268 - INFO - Processed 109300000 reads so far
2011-05-20 00:11:47,222 - INFO - Processed 109400000 reads so far
2011-05-20 00:11:57,736 - INFO - Processed 109500000 reads so far
2011-05-20 00:12:26,740 - INFO - Processed 109600000 reads so far
2011-05-20 00:12:40,378 - INFO - Processed 109700000 reads so far
2011-05-20 00:13:05,005 - INFO - Processed 109800000 reads so far
2011-05-20 00:13:09,823 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:102990120-123010120
2011-05-20 00:13:16,297 - INFO - Processed 109900000 reads so far
2011-05-20 00:13:26,146 - INFO - Processed 110000000 reads so far
2011-05-20 00:13:37,714 - INFO - Processed 110100000 reads so far
2011-05-20 00:13:46,887 - INFO - Processed 110200000 reads so far
2011-05-20 00:13:55,077 - INFO - Processed 110300000 reads so far
2011-05-20 00:14:03,717 - INFO - Processed 110400000 reads so far
2011-05-20 00:14:13,060 - INFO - Processed 110500000 reads so far
2011-05-20 00:14:24,613 - INFO - Processed 110600000 reads so far
2011-05-20 00:14:34,636 - INFO - Processed 110700000 reads so far
2011-05-20 00:14:43,412 - INFO - Processed 110800000 reads so far
2011-05-20 00:15:07,457 - INFO - Processed 110900000 reads so far
2011-05-20 00:15:18,966 - INFO - Processed 111000000 reads so far
2011-05-20 00:15:30,785 - INFO - Processed 111100000 reads so far
2011-05-20 00:15:41,847 - INFO - Processed 111200000 reads so far
2011-05-20 00:15:54,137 - INFO - Processed 111300000 reads so far
2011-05-20 00:16:06,902 - INFO - Processed 111400000 reads so far
2011-05-20 00:16:18,876 - INFO - Processed 111500000 reads so far
2011-05-20 00:16:32,319 - INFO - Processed 111600000 reads so far
2011-05-20 00:16:45,252 - INFO - Processed 111700000 reads so far
2011-05-20 00:16:57,089 - INFO - Processed 111800000 reads so far
2011-05-20 00:17:00,574 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:122990132-143010132
2011-05-20 00:17:08,706 - INFO - Processed 111900000 reads so far
2011-05-20 00:17:20,341 - INFO - Processed 112000000 reads so far
2011-05-20 00:17:33,468 - INFO - Processed 112100000 reads so far
2011-05-20 00:17:44,808 - INFO - Processed 112200000 reads so far
2011-05-20 00:17:56,304 - INFO - Processed 112300000 reads so far
2011-05-20 00:18:09,752 - INFO - Processed 112400000 reads so far
2011-05-20 00:18:22,497 - INFO - Processed 112500000 reads so far
2011-05-20 00:18:34,253 - INFO - Processed 112600000 reads so far
2011-05-20 00:18:44,506 - INFO - Processed 112700000 reads so far
2011-05-20 00:18:56,437 - INFO - Processed 112800000 reads so far
2011-05-20 00:18:58,543 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:142990146-163010146
2011-05-20 00:19:11,435 - INFO - Processed 112900000 reads so far
2011-05-20 00:19:22,668 - INFO - Processed 113000000 reads so far
2011-05-20 00:19:33,542 - INFO - Processed 113100000 reads so far
2011-05-20 00:19:40,218 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:2990103-23010103
2011-05-20 00:19:45,502 - INFO - Processed 113200000 reads so far
2011-05-20 00:19:57,051 - INFO - Processed 113300000 reads so far
2011-05-20 00:20:09,897 - INFO - Processed 113400000 reads so far
2011-05-20 00:20:21,717 - INFO - Processed 113500000 reads so far
2011-05-20 00:20:32,912 - INFO - Processed 113600000 reads so far
2011-05-20 00:20:44,534 - INFO - Processed 113700000 reads so far
2011-05-20 00:20:59,024 - INFO - Processed 113800000 reads so far
2011-05-20 00:21:09,842 - INFO - Processed 113900000 reads so far
2011-05-20 00:21:20,377 - INFO - Processed 114000000 reads so far
2011-05-20 00:21:24,129 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:22990107-43010107
2011-05-20 00:21:31,751 - INFO - Processed 114100000 reads so far
2011-05-20 00:21:42,214 - INFO - Processed 114200000 reads so far
2011-05-20 00:21:53,163 - INFO - Processed 114300000 reads so far
2011-05-20 00:22:02,886 - INFO - Processed 114400000 reads so far
2011-05-20 00:22:13,736 - INFO - Processed 114500000 reads so far
2011-05-20 00:22:26,225 - INFO - Processed 114600000 reads so far
2011-05-20 00:22:37,566 - INFO - Processed 114700000 reads so far
2011-05-20 00:22:50,335 - INFO - Processed 114800000 reads so far
2011-05-20 00:22:57,411 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:46351999-66371999
2011-05-20 00:23:01,146 - INFO - Processed 114900000 reads so far
2011-05-20 00:23:13,242 - INFO - Processed 115000000 reads so far
2011-05-20 00:23:29,935 - INFO - Processed 115100000 reads so far
2011-05-20 00:23:42,334 - INFO - Processed 115200000 reads so far
2011-05-20 00:23:52,596 - INFO - Processed 115300000 reads so far
2011-05-20 00:24:03,105 - INFO - Processed 115400000 reads so far
2011-05-20 00:24:13,277 - INFO - Processed 115500000 reads so far
2011-05-20 00:24:24,702 - INFO - Processed 115600000 reads so far
2011-05-20 00:24:36,975 - INFO - Processed 115700000 reads so far
2011-05-20 00:24:45,058 - INFO - Processed 115800000 reads so far
2011-05-20 00:24:50,023 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:66352019-86372019
2011-05-20 00:24:53,914 - INFO - Processed 115900000 reads so far
2011-05-20 00:25:05,401 - INFO - Processed 116000000 reads so far
2011-05-20 00:25:16,798 - INFO - Processed 116100000 reads so far
2011-05-20 00:25:25,654 - INFO - Processed 116200000 reads so far
2011-05-20 00:25:35,757 - INFO - Processed 116300000 reads so far
2011-05-20 00:25:47,660 - INFO - Processed 116400000 reads so far
2011-05-20 00:25:55,753 - INFO - Processed 116500000 reads so far
2011-05-20 00:26:04,508 - INFO - Processed 116600000 reads so far
2011-05-20 00:26:13,429 - INFO - Processed 116700000 reads so far
2011-05-20 00:26:23,130 - INFO - Processed 116800000 reads so far
2011-05-20 00:26:30,895 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:86352021-106372021
2011-05-20 00:26:31,334 - INFO - Processed 116900000 reads so far
2011-05-20 00:26:38,506 - INFO - Processed 117000000 reads so far
2011-05-20 00:26:48,080 - INFO - Processed 117100000 reads so far
2011-05-20 00:26:58,026 - INFO - Processed 117200000 reads so far
2011-05-20 00:27:05,157 - INFO - Processed 117300000 reads so far
2011-05-20 00:27:15,809 - INFO - Processed 117400000 reads so far
2011-05-20 00:27:23,452 - INFO - Processed 117500000 reads so far
2011-05-20 00:27:33,426 - INFO - Processed 117600000 reads so far
2011-05-20 00:27:42,511 - INFO - Processed 117700000 reads so far
2011-05-20 00:28:06,547 - INFO - Processed 117800000 reads so far
2011-05-20 00:28:28,214 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:106352115-126372115
2011-05-20 00:28:28,719 - INFO - Processed 117900000 reads so far
2011-05-20 00:28:42,419 - INFO - Processed 118000000 reads so far
2011-05-20 00:28:58,207 - INFO - Processed 118100000 reads so far
2011-05-20 00:29:07,324 - INFO - Processed 118200000 reads so far
2011-05-20 00:29:16,814 - INFO - Processed 118300000 reads so far
2011-05-20 00:29:27,830 - INFO - Processed 118400000 reads so far
2011-05-20 00:29:42,075 - INFO - Processed 118500000 reads so far
2011-05-20 00:29:53,503 - INFO - Processed 118600000 reads so far
2011-05-20 00:30:03,393 - INFO - Processed 118700000 reads so far
2011-05-20 00:30:14,455 - INFO - Processed 118800000 reads so far
2011-05-20 00:30:26,324 - INFO - Processed 118900000 reads so far
2011-05-20 00:30:30,382 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:126352124-146372124
2011-05-20 00:30:37,980 - INFO - Processed 119000000 reads so far
2011-05-20 00:30:49,531 - INFO - Processed 119100000 reads so far
2011-05-20 00:31:02,495 - INFO - Processed 119200000 reads so far
2011-05-20 00:31:13,744 - INFO - Processed 119300000 reads so far
2011-05-20 00:31:26,121 - INFO - Processed 119400000 reads so far
2011-05-20 00:31:39,628 - INFO - Processed 119500000 reads so far
2011-05-20 00:31:51,579 - INFO - Processed 119600000 reads so far
2011-05-20 00:32:02,946 - INFO - Processed 119700000 reads so far
2011-05-20 00:32:16,091 - INFO - Processed 119800000 reads so far
2011-05-20 00:32:27,410 - INFO - Processed 119900000 reads so far
2011-05-20 00:32:39,742 - INFO - Processed 120000000 reads so far
2011-05-20 00:32:40,410 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:146352133-166372133
2011-05-20 00:32:51,530 - INFO - Processed 120100000 reads so far
2011-05-20 00:33:02,364 - INFO - Processed 120200000 reads so far
2011-05-20 00:33:12,021 - INFO - Processed 120300000 reads so far
2011-05-20 00:33:17,395 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7_random:0-20010094
2011-05-20 00:33:18,560 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:2990059-23010059
2011-05-20 00:33:24,345 - INFO - Processed 120400000 reads so far
2011-05-20 00:33:32,092 - INFO - Processed 120500000 reads so far
2011-05-20 00:33:41,406 - INFO - Processed 120600000 reads so far
2011-05-20 00:33:50,593 - INFO - Processed 120700000 reads so far
2011-05-20 00:34:01,772 - INFO - Processed 120800000 reads so far
2011-05-20 00:34:12,132 - INFO - Processed 120900000 reads so far
2011-05-20 00:34:24,308 - INFO - Processed 121000000 reads so far
2011-05-20 00:34:35,410 - INFO - Processed 121100000 reads so far
2011-05-20 00:34:44,052 - INFO - Processed 121200000 reads so far
2011-05-20 00:34:53,150 - INFO - Processed 121300000 reads so far
2011-05-20 00:35:01,888 - INFO - Processed 121400000 reads so far
2011-05-20 00:35:11,547 - INFO - Processed 121500000 reads so far
2011-05-20 00:35:11,569 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:22990064-43010064
2011-05-20 00:35:20,092 - INFO - Processed 121600000 reads so far
2011-05-20 00:35:29,367 - INFO - Processed 121700000 reads so far
2011-05-20 00:35:36,465 - INFO - Processed 121800000 reads so far
2011-05-20 00:35:44,262 - INFO - Processed 121900000 reads so far
2011-05-20 00:35:53,631 - INFO - Processed 122000000 reads so far
2011-05-20 00:36:03,175 - INFO - Processed 122100000 reads so far
2011-05-20 00:36:12,583 - INFO - Processed 122200000 reads so far
2011-05-20 00:36:20,989 - INFO - Processed 122300000 reads so far
2011-05-20 00:36:32,147 - INFO - Processed 122400000 reads so far
2011-05-20 00:36:42,754 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:42990066-63010066
2011-05-20 00:36:44,598 - INFO - Processed 122500000 reads so far
2011-05-20 00:36:52,282 - INFO - Processed 122600000 reads so far
2011-05-20 00:37:03,518 - INFO - Processed 122700000 reads so far
2011-05-20 00:37:12,228 - INFO - Processed 122800000 reads so far
2011-05-20 00:37:21,999 - INFO - Processed 122900000 reads so far
2011-05-20 00:37:31,735 - INFO - Processed 123000000 reads so far
2011-05-20 00:37:38,588 - INFO - Processed 123100000 reads so far
2011-05-20 00:37:49,524 - INFO - Processed 123200000 reads so far
2011-05-20 00:37:56,796 - INFO - Processed 123300000 reads so far
2011-05-20 00:38:04,004 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:62990103-83010103
2011-05-20 00:38:08,658 - INFO - Processed 123400000 reads so far
2011-05-20 00:38:19,426 - INFO - Processed 123500000 reads so far
2011-05-20 00:38:30,027 - INFO - Processed 123600000 reads so far
2011-05-20 00:38:40,008 - INFO - Processed 123700000 reads so far
2011-05-20 00:38:50,267 - INFO - Processed 123800000 reads so far
2011-05-20 00:39:00,663 - INFO - Processed 123900000 reads so far
2011-05-20 00:39:12,097 - INFO - Processed 124000000 reads so far
2011-05-20 00:39:21,869 - INFO - Processed 124100000 reads so far
2011-05-20 00:39:32,562 - INFO - Processed 124200000 reads so far
2011-05-20 00:39:45,809 - INFO - Processed 124300000 reads so far
2011-05-20 00:39:53,218 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:82990138-103010138
2011-05-20 00:39:56,988 - INFO - Processed 124400000 reads so far
2011-05-20 00:40:06,133 - INFO - Processed 124500000 reads so far
2011-05-20 00:40:16,658 - INFO - Processed 124600000 reads so far
2011-05-20 00:40:27,316 - INFO - Processed 124700000 reads so far
2011-05-20 00:40:35,387 - INFO - Processed 124800000 reads so far
2011-05-20 00:40:44,752 - INFO - Processed 124900000 reads so far
2011-05-20 00:40:56,134 - INFO - Processed 125000000 reads so far
2011-05-20 00:41:09,001 - INFO - Processed 125100000 reads so far
2011-05-20 00:41:20,219 - INFO - Processed 125200000 reads so far
2011-05-20 00:41:31,181 - INFO - Processed 125300000 reads so far
2011-05-20 00:41:43,914 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:102990153-123010153
2011-05-20 00:41:45,824 - INFO - Processed 125400000 reads so far
2011-05-20 00:41:57,201 - INFO - Processed 125500000 reads so far
2011-05-20 00:42:08,512 - INFO - Processed 125600000 reads so far
2011-05-20 00:42:19,792 - INFO - Processed 125700000 reads so far
2011-05-20 00:42:32,505 - INFO - Processed 125800000 reads so far
2011-05-20 00:42:44,400 - INFO - Processed 125900000 reads so far
2011-05-20 00:42:57,928 - INFO - Processed 126000000 reads so far
2011-05-20 00:43:09,397 - INFO - Processed 126100000 reads so far
2011-05-20 00:43:21,508 - INFO - Processed 126200000 reads so far
2011-05-20 00:43:30,949 - INFO - Processed 126300000 reads so far
2011-05-20 00:43:39,609 - INFO - Processed 126400000 reads so far
2011-05-20 00:43:40,917 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:122990162-143010162
2011-05-20 00:43:50,459 - INFO - Processed 126500000 reads so far
2011-05-20 00:44:02,428 - INFO - Processed 126600000 reads so far
2011-05-20 00:44:09,668 - INFO - Processed 126700000 reads so far
2011-05-20 00:44:19,688 - INFO - Processed 126800000 reads so far
2011-05-20 00:44:31,938 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8_random:0-20010036
2011-05-20 00:44:32,615 - INFO - Processed 126900000 reads so far
2011-05-20 00:44:43,553 - INFO - Processed 127000000 reads so far
2011-05-20 00:44:48,892 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:2989968-23009968
2011-05-20 00:44:53,153 - INFO - Processed 127100000 reads so far
2011-05-20 00:45:02,381 - INFO - Processed 127200000 reads so far
2011-05-20 00:45:14,547 - INFO - Processed 127300000 reads so far
2011-05-20 00:45:24,493 - INFO - Processed 127400000 reads so far
2011-05-20 00:45:34,041 - INFO - Processed 127500000 reads so far
2011-05-20 00:45:43,528 - INFO - Processed 127600000 reads so far
2011-05-20 00:45:53,069 - INFO - Processed 127700000 reads so far
2011-05-20 00:46:02,216 - INFO - Processed 127800000 reads so far
2011-05-20 00:46:12,053 - INFO - Processed 127900000 reads so far
2011-05-20 00:46:22,272 - INFO - Processed 128000000 reads so far
2011-05-20 00:46:31,062 - INFO - Processed 128100000 reads so far
2011-05-20 00:46:39,918 - INFO - Processed 128200000 reads so far
2011-05-20 00:46:49,626 - INFO - Processed 128300000 reads so far
2011-05-20 00:46:59,171 - INFO - Processed 128400000 reads so far
2011-05-20 00:47:07,725 - INFO - Processed 128500000 reads so far
2011-05-20 00:47:15,311 - INFO - Processed 128600000 reads so far
2011-05-20 00:47:24,696 - INFO - Processed 128700000 reads so far
2011-05-20 00:47:34,314 - INFO - Processed 128800000 reads so far
2011-05-20 00:47:42,405 - INFO - Processed 128900000 reads so far
2011-05-20 00:47:48,184 - INFO - Processed 129000000 reads so far
2011-05-20 00:47:55,817 - INFO - Processed 129100000 reads so far
2011-05-20 00:48:04,647 - INFO - Processed 129200000 reads so far
2011-05-20 00:48:11,176 - INFO - Processed 129300000 reads so far
2011-05-20 00:48:16,808 - INFO - Processed 129400000 reads so far
2011-05-20 00:48:24,857 - INFO - Processed 129500000 reads so far
2011-05-20 00:48:33,089 - INFO - Processed 129600000 reads so far
2011-05-20 00:48:39,787 - INFO - Processed 129700000 reads so far
2011-05-20 00:48:45,787 - INFO - Processed 129800000 reads so far
2011-05-20 00:48:51,301 - INFO - Processed 129900000 reads so far
2011-05-20 00:49:00,460 - INFO - Processed 130000000 reads so far
2011-05-20 00:49:07,985 - INFO - Processed 130100000 reads so far
2011-05-20 00:49:14,162 - INFO - Processed 130200000 reads so far
2011-05-20 00:49:24,705 - INFO - Processed 130300000 reads so far
2011-05-20 00:49:31,642 - INFO - Processed 130400000 reads so far
2011-05-20 00:49:39,855 - INFO - Processed 130500000 reads so far
2011-05-20 00:49:48,028 - INFO - Processed 130600000 reads so far
2011-05-20 00:49:56,434 - INFO - Processed 130700000 reads so far
2011-05-20 00:50:03,515 - INFO - Processed 130800000 reads so far
2011-05-20 00:50:19,269 - INFO - Processed 130900000 reads so far
2011-05-20 00:50:31,238 - INFO - Processed 131000000 reads so far
2011-05-20 00:50:41,471 - INFO - Processed 131100000 reads so far
2011-05-20 00:50:50,991 - INFO - Processed 131200000 reads so far
2011-05-20 00:50:59,524 - INFO - Processed 131300000 reads so far
2011-05-20 00:51:08,101 - INFO - Processed 131400000 reads so far
2011-05-20 00:51:18,228 - INFO - Processed 131500000 reads so far
2011-05-20 00:51:27,641 - INFO - Processed 131600000 reads so far
2011-05-20 00:51:37,494 - INFO - Processed 131700000 reads so far
2011-05-20 00:51:46,726 - INFO - Processed 131800000 reads so far
2011-05-20 00:51:57,639 - INFO - Processed 131900000 reads so far
2011-05-20 00:52:07,832 - INFO - Processed 132000000 reads so far
2011-05-20 00:52:16,565 - INFO - Processed 132100000 reads so far
2011-05-20 00:52:28,509 - INFO - Processed 132200000 reads so far
2011-05-20 00:52:39,798 - INFO - Processed 132300000 reads so far
2011-05-20 00:52:50,461 - INFO - Processed 132400000 reads so far
2011-05-20 00:53:00,413 - INFO - Processed 132500000 reads so far
2011-05-20 00:53:10,729 - INFO - Processed 132600000 reads so far
2011-05-20 00:53:21,742 - INFO - Processed 132700000 reads so far
2011-05-20 00:53:31,196 - INFO - Processed 132800000 reads so far
2011-05-20 00:53:42,074 - INFO - Processed 132900000 reads so far
2011-05-20 00:53:51,673 - INFO - Processed 133000000 reads so far
2011-05-20 00:54:01,090 - INFO - Processed 133100000 reads so far
2011-05-20 00:54:12,981 - INFO - Processed 133200000 reads so far
2011-05-20 00:54:22,450 - INFO - Processed 133300000 reads so far
2011-05-20 00:54:29,987 - INFO - Processed 133400000 reads so far
2011-05-20 00:54:39,990 - INFO - Processed 133500000 reads so far
2011-05-20 00:54:49,778 - INFO - Processed 133600000 reads so far
2011-05-20 00:55:00,042 - INFO - Processed 133700000 reads so far
2011-05-20 00:55:09,717 - INFO - Processed 133800000 reads so far
2011-05-20 00:55:21,567 - INFO - Processed 133900000 reads so far
2011-05-20 00:55:31,238 - INFO - Processed 134000000 reads so far
2011-05-20 00:55:40,080 - INFO - Processed 134100000 reads so far
2011-05-20 00:55:46,976 - INFO - Processed 134200000 reads so far
2011-05-20 00:55:55,642 - INFO - Processed 134300000 reads so far
2011-05-20 00:56:05,648 - INFO - Processed 134400000 reads so far
2011-05-20 00:56:19,441 - INFO - Processed 134500000 reads so far
2011-05-20 00:56:31,321 - INFO - Processed 134600000 reads so far
2011-05-20 00:56:39,743 - INFO - Processed 134700000 reads so far
2011-05-20 00:56:50,863 - INFO - Processed 134800000 reads so far
2011-05-20 00:57:02,055 - INFO - Processed 134900000 reads so far
2011-05-20 00:57:11,752 - INFO - Processed 135000000 reads so far
2011-05-20 00:57:20,314 - INFO - Processed 135100000 reads so far
2011-05-20 00:57:32,771 - INFO - Processed 135200000 reads so far
2011-05-20 00:57:45,020 - INFO - Processed 135300000 reads so far
2011-05-20 00:57:50,185 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:22989969-43009969
2011-05-20 00:57:55,575 - INFO - Processed 135400000 reads so far
2011-05-20 00:58:09,124 - INFO - Processed 135500000 reads so far
2011-05-20 00:58:20,714 - INFO - Processed 135600000 reads so far
2011-05-20 00:58:32,257 - INFO - Processed 135700000 reads so far
2011-05-20 00:58:44,819 - INFO - Processed 135800000 reads so far
2011-05-20 00:58:56,369 - INFO - Processed 135900000 reads so far
2011-05-20 00:59:11,837 - INFO - Processed 136000000 reads so far
2011-05-20 00:59:21,206 - INFO - Processed 136100000 reads so far
2011-05-20 00:59:32,099 - INFO - Processed 136200000 reads so far
2011-05-20 00:59:45,481 - INFO - Processed 136300000 reads so far
2011-05-20 00:59:59,322 - INFO - Processed 136400000 reads so far
2011-05-20 01:00:13,615 - INFO - Processed 136500000 reads so far
2011-05-20 01:00:16,507 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:42989991-63009991
2011-05-20 01:00:25,741 - INFO - Processed 136600000 reads so far
2011-05-20 01:00:38,682 - INFO - Processed 136700000 reads so far
2011-05-20 01:00:53,766 - INFO - Processed 136800000 reads so far
2011-05-20 01:01:05,224 - INFO - Processed 136900000 reads so far
2011-05-20 01:01:19,560 - INFO - Processed 137000000 reads so far
2011-05-20 01:01:33,119 - INFO - Processed 137100000 reads so far
2011-05-20 01:01:43,603 - INFO - Processed 137200000 reads so far
2011-05-20 01:01:55,057 - INFO - Processed 137300000 reads so far
2011-05-20 01:02:06,665 - INFO - Processed 137400000 reads so far
2011-05-20 01:02:20,240 - INFO - Processed 137500000 reads so far
2011-05-20 01:02:29,007 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:62990009-83010009
2011-05-20 01:02:31,148 - INFO - Processed 137600000 reads so far
2011-05-20 01:02:48,111 - INFO - Processed 137700000 reads so far
2011-05-20 01:02:59,631 - INFO - Processed 137800000 reads so far
2011-05-20 01:03:11,463 - INFO - Processed 137900000 reads so far
2011-05-20 01:03:24,183 - INFO - Processed 138000000 reads so far
2011-05-20 01:03:35,545 - INFO - Processed 138100000 reads so far
2011-05-20 01:03:46,749 - INFO - Processed 138200000 reads so far
2011-05-20 01:04:00,021 - INFO - Processed 138300000 reads so far
2011-05-20 01:04:11,032 - INFO - Processed 138400000 reads so far
2011-05-20 01:04:21,829 - INFO - Processed 138500000 reads so far
2011-05-20 01:04:29,347 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:82990026-103010026
2011-05-20 01:04:30,732 - INFO - Processed 138600000 reads so far
2011-05-20 01:04:39,566 - INFO - Processed 138700000 reads so far
2011-05-20 01:04:51,378 - INFO - Processed 138800000 reads so far
2011-05-20 01:05:00,235 - INFO - Processed 138900000 reads so far
2011-05-20 01:05:14,629 - INFO - Processed 139000000 reads so far
2011-05-20 01:05:27,208 - INFO - Processed 139100000 reads so far
2011-05-20 01:05:39,549 - INFO - Processed 139200000 reads so far
2011-05-20 01:05:51,022 - INFO - Processed 139300000 reads so far
2011-05-20 01:06:02,870 - INFO - Processed 139400000 reads so far
2011-05-20 01:06:14,385 - INFO - Processed 139500000 reads so far
2011-05-20 01:06:25,653 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:102990028-123010028
2011-05-20 01:06:27,386 - INFO - Processed 139600000 reads so far
2011-05-20 01:06:39,998 - INFO - Processed 139700000 reads so far
2011-05-20 01:06:51,805 - INFO - Processed 139800000 reads so far
2011-05-20 01:07:03,923 - INFO - Processed 139900000 reads so far
2011-05-20 01:07:17,003 - INFO - Processed 140000000 reads so far
2011-05-20 01:07:28,372 - INFO - Processed 140100000 reads so far
2011-05-20 01:07:38,388 - INFO - Processed 140200000 reads so far
2011-05-20 01:07:49,900 - INFO - Processed 140300000 reads so far
2011-05-20 01:08:00,332 - INFO - Processed 140400000 reads so far
2011-05-20 01:08:10,531 - INFO - Processed 140500000 reads so far
2011-05-20 01:08:22,144 - INFO - Processed 140600000 reads so far
2011-05-20 01:08:28,047 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:122990040-143010040
2011-05-20 01:08:33,340 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9_random:0-20010012
2011-05-20 01:08:33,391 - INFO - Processed 140700000 reads so far
2011-05-20 01:08:36,133 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrM:0-20010000
2011-05-20 01:08:40,636 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrUn_random:0-20010000
2011-05-20 01:08:41,117 - INFO - Processed 140800000 reads so far
2011-05-20 01:08:49,724 - INFO - Processed 140900000 reads so far
2011-05-20 01:08:59,218 - INFO - Processed 141000000 reads so far
2011-05-20 01:09:06,313 - INFO - Processed 141100000 reads so far
2011-05-20 01:09:13,119 - INFO - Processed 141200000 reads so far
2011-05-20 01:09:13,268 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:2990007-23010007
2011-05-20 01:09:20,250 - INFO - Processed 141300000 reads so far
2011-05-20 01:09:31,356 - INFO - Processed 141400000 reads so far
2011-05-20 01:09:43,714 - INFO - Processed 141500000 reads so far
2011-05-20 01:10:34,244 - INFO - Processed 141600000 reads so far
2011-05-20 01:11:31,308 - INFO - Processed 141700000 reads so far
2011-05-20 01:12:37,972 - INFO - Processed 141800000 reads so far
2011-05-20 01:12:51,372 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:22990033-43010033
2011-05-20 01:13:13,121 - INFO - Processed 141900000 reads so far
2011-05-20 01:13:27,309 - INFO - Processed 142000000 reads so far
2011-05-20 01:13:35,417 - INFO - Processed 142100000 reads so far
2011-05-20 01:13:49,186 - INFO - Processed 142200000 reads so far
2011-05-20 01:13:58,676 - INFO - Processed 142300000 reads so far
2011-05-20 01:14:07,560 - INFO - Processed 142400000 reads so far
2011-05-20 01:14:13,404 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:42990106-63010106
2011-05-20 01:14:19,958 - INFO - Processed 142500000 reads so far
2011-05-20 01:14:30,044 - INFO - Processed 142600000 reads so far
2011-05-20 01:14:39,329 - INFO - Processed 142700000 reads so far
2011-05-20 01:14:47,915 - INFO - Processed 142800000 reads so far
2011-05-20 01:14:56,297 - INFO - Processed 142900000 reads so far
2011-05-20 01:15:03,955 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:62990138-83010138
2011-05-20 01:15:06,993 - INFO - Processed 143000000 reads so far
2011-05-20 01:15:17,155 - INFO - Processed 143100000 reads so far
2011-05-20 01:15:31,545 - INFO - Processed 143200000 reads so far
2011-05-20 01:15:40,392 - INFO - Processed 143300000 reads so far
2011-05-20 01:15:49,603 - INFO - Processed 143400000 reads so far
2011-05-20 01:16:00,282 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:82990171-103010171
2011-05-20 01:16:01,852 - INFO - Processed 143500000 reads so far
2011-05-20 01:16:12,035 - INFO - Processed 143600000 reads so far
2011-05-20 01:16:22,344 - INFO - Processed 143700000 reads so far
2011-05-20 01:16:35,722 - INFO - Processed 143800000 reads so far
2011-05-20 01:16:46,506 - INFO - Processed 143900000 reads so far
2011-05-20 01:16:58,706 - INFO - Processed 144000000 reads so far
2011-05-20 01:16:59,059 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:102990190-123010190
2011-05-20 01:17:12,711 - INFO - Processed 144100000 reads so far
2011-05-20 01:17:24,927 - INFO - Processed 144200000 reads so far
2011-05-20 01:17:36,622 - INFO - Processed 144300000 reads so far
2011-05-20 01:17:51,666 - INFO - Processed 144400000 reads so far
2011-05-20 01:18:04,597 - INFO - Processed 144500000 reads so far
2011-05-20 01:18:13,139 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:122990217-143010217
2011-05-20 01:18:15,623 - INFO - Processed 144600000 reads so far
2011-05-20 01:18:27,331 - INFO - Processed 144700000 reads so far
2011-05-20 01:18:38,369 - INFO - Processed 144800000 reads so far
2011-05-20 01:18:51,637 - INFO - Processed 144900000 reads so far
2011-05-20 01:19:04,082 - INFO - Processed 145000000 reads so far
2011-05-20 01:19:14,727 - INFO - Processed 145100000 reads so far
2011-05-20 01:19:21,202 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:142990312-163010312
2011-05-20 01:19:28,816 - INFO - Processed 145200000 reads so far
2011-05-20 01:19:39,921 - INFO - Processed 145300000 reads so far
2011-05-20 01:19:52,256 - INFO - Processed 145400000 reads so far
2011-05-20 01:20:08,640 - INFO - Processed 145500000 reads so far
2011-05-20 01:20:19,236 - INFO - Processed 145600000 reads so far
2011-05-20 01:20:24,194 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:162990367-183010367
2011-05-20 01:20:32,329 - INFO - Processed 145700000 reads so far
2011-05-20 01:20:40,116 - INFO - Processed 145800000 reads so far
2011-05-20 01:20:41,478 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX_random:0-20010000
2011-05-20 01:20:45,988 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY:0-20010000
2011-05-20 01:20:49,157 - INFO - Processed 145900000 reads so far
2011-05-20 01:20:52,774 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:0-20010057
2011-05-20 01:20:58,638 - INFO - Processed 146000000 reads so far
2011-05-20 01:21:08,624 - INFO - Processed 146100000 reads so far
2011-05-20 01:21:18,678 - INFO - Processed 146200000 reads so far
2011-05-20 01:21:28,096 - INFO - Processed 146300000 reads so far
2011-05-20 01:21:40,970 - INFO - Processed 146400000 reads so far
2011-05-20 01:21:50,802 - INFO - Processed 146500000 reads so far
2011-05-20 01:22:00,841 - INFO - Processed 146600000 reads so far
2011-05-20 01:22:07,821 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:19990101-40010101
2011-05-20 01:22:13,359 - INFO - Processed 146700000 reads so far
2011-05-20 01:22:25,674 - INFO - Processed 146800000 reads so far
2011-05-20 01:22:36,721 - INFO - Processed 146900000 reads so far
2011-05-20 01:22:47,333 - INFO - Processed 147000000 reads so far
2011-05-20 01:22:52,959 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:39990193-60010193
2011-05-20 01:22:56,203 - INFO - Processed 147100000 reads so far
2011-05-20 01:23:05,983 - INFO - Processed 147200000 reads so far
2011-05-20 01:23:18,484 - INFO - Processed 147300000 reads so far
2011-05-20 01:23:32,010 - INFO - Processed 147400000 reads so far
2011-05-20 01:23:42,454 - INFO - Processed 147500000 reads so far
2011-05-20 01:23:50,975 - INFO - Processed 147600000 reads so far
2011-05-20 01:24:00,673 - INFO - Processed 147700000 reads so far
2011-05-20 01:24:04,736 - INFO - Processed 147800000 reads so far
2011-05-20 01:24:08,944 - INFO - Processed 147900000 reads so far
2011-05-20 01:24:12,673 - INFO - Processed 148000000 reads so far
2011-05-20 01:24:16,122 - INFO - Processed 148100000 reads so far
2011-05-20 01:24:19,365 - INFO - Processed 148200000 reads so far
2011-05-20 01:24:23,100 - INFO - Processed 148300000 reads so far
2011-05-20 01:24:28,581 - INFO - Processed 148400000 reads so far
2011-05-20 01:24:35,092 - INFO - Processed 148500000 reads so far
2011-05-20 01:24:39,486 - INFO - Processed 148600000 reads so far
2011-05-20 01:24:44,850 - INFO - Processed 148700000 reads so far
2011-05-20 01:24:49,305 - INFO - Processed 148800000 reads so far
2011-05-20 01:24:53,716 - INFO - Processed 148900000 reads so far
2011-05-20 01:24:58,526 - INFO - Processed 149000000 reads so far
2011-05-20 01:25:02,597 - INFO - Processed 149100000 reads so far
2011-05-20 01:25:05,717 - INFO - Processed 149200000 reads so far
2011-05-20 01:25:08,913 - INFO - Processed 149300000 reads so far
2011-05-20 01:25:13,098 - INFO - Processed 149400000 reads so far
2011-05-20 01:25:17,485 - INFO - Processed 149500000 reads so far
2011-05-20 01:25:20,522 - INFO - Processed 149600000 reads so far
2011-05-20 01:25:21,304 - INFO - Finished loading data. Outputting QC metrics
2011-05-20 01:25:42,443 - INFO - Finished outputting QC metrics
2011-05-20 01:25:42,588 - INFO - Finished generating QC metrics