2011-05-20 01:09:56,790 - INFO - Generating QC metrics for BAM File ['WTCHG_12341.bam']
2011-05-20 01:09:56,790 - INFO - Output will go to WTCHG_12341.qc.txt.tmp
2011-05-20 01:09:56,790 - INFO - Reading GC Map from file /data/Genomes/gcMap/Mouse37.gcMap.gz
2011-05-20 01:11:56,966 - INFO - Finished reading GC Map
2011-05-20 01:11:56,966 - INFO - Reading CDS from exon definition file /data/Genomes/annotation/Mouse37.refGene.txt.gz
2011-05-20 01:11:58,819 - INFO - Read 382138 exons (33804740 nucleotides) for 32 chromosomes
2011-05-20 01:11:58,820 - INFO - Computing coverage cut-off
2011-05-20 01:11:58,820 - INFO - Retrieving BAM file coverage info from samtools pileup
2011-05-20 01:12:44,380 - INFO - Processed 1000000 pile-up sites
2011-05-20 01:13:05,227 - INFO - Processed 2000000 pile-up sites
2011-05-20 01:13:11,929 - INFO - Processed 3000000 pile-up sites
2011-05-20 01:13:14,509 - INFO - Processed 4000000 pile-up sites
2011-05-20 01:13:17,034 - INFO - Processed 5000000 pile-up sites
2011-05-20 01:13:24,823 - INFO - Processed 6000000 pile-up sites
2011-05-20 01:13:29,442 - INFO - Processed 7000000 pile-up sites
2011-05-20 01:13:34,149 - INFO - Processed 8000000 pile-up sites
2011-05-20 01:13:37,747 - INFO - Processed 9000000 pile-up sites
2011-05-20 01:13:43,213 - INFO - Processed 10000000 pile-up sites
2011-05-20 01:13:50,904 - INFO - Processed 11000000 pile-up sites
2011-05-20 01:13:55,208 - INFO - Processed 12000000 pile-up sites
2011-05-20 01:13:59,051 - INFO - Processed 13000000 pile-up sites
2011-05-20 01:14:01,489 - INFO - Processed 14000000 pile-up sites
2011-05-20 01:14:05,763 - INFO - Processed 15000000 pile-up sites
2011-05-20 01:14:10,154 - INFO - Processed 16000000 pile-up sites
2011-05-20 01:14:13,631 - INFO - Processed 17000000 pile-up sites
2011-05-20 01:14:18,692 - INFO - Processed 18000000 pile-up sites
2011-05-20 01:14:23,594 - INFO - Processed 19000000 pile-up sites
2011-05-20 01:14:28,477 - INFO - Processed 20000000 pile-up sites
2011-05-20 01:14:30,931 - INFO - Processed 21000000 pile-up sites
2011-05-20 01:14:33,390 - INFO - Processed 22000000 pile-up sites
2011-05-20 01:14:36,117 - INFO - Processed 23000000 pile-up sites
2011-05-20 01:14:39,002 - INFO - Processed 24000000 pile-up sites
2011-05-20 01:14:43,031 - INFO - Processed 25000000 pile-up sites
2011-05-20 01:14:48,027 - INFO - Processed 26000000 pile-up sites
2011-05-20 01:14:53,027 - INFO - Processed 27000000 pile-up sites
2011-05-20 01:14:57,277 - INFO - Processed 28000000 pile-up sites
2011-05-20 01:15:01,724 - INFO - Processed 29000000 pile-up sites
2011-05-20 01:15:05,041 - INFO - Processed 30000000 pile-up sites
2011-05-20 01:15:07,995 - INFO - Finished processing pile-up on 30769107 sites (200000000 nucleotides)
2011-05-20 01:15:07,995 - INFO - Coverage cut-off value is 26
2011-05-20 01:15:07,995 - INFO - Loading data into QC data manager
2011-05-20 01:15:08,174 - WARNING - Found RG tag 'SM' (value: 311) duplicated in CO field (value: 4629/10) -- ignoring CO value
2011-05-20 01:15:08,174 - WARNING - Found RG tag 'ID' (value: WTCHG_12341) duplicated in CO field (value: 4629/10) -- ignoring CO value
2011-05-20 01:15:08,174 - WARNING - Found RG tag 'SM' (value: 311) duplicated in CO field (value: 4629/10) -- ignoring CO value
2011-05-20 01:15:08,174 - WARNING - Found RG tag 'ID' (value: WTCHG_12341) duplicated in CO field (value: 4629/10) -- ignoring CO value
2011-05-20 01:15:08,175 - WARNING - Found RG tag 'SM' (value: 311) duplicated in CO field (value: 4629/10) -- ignoring CO value
2011-05-20 01:15:08,175 - WARNING - Found RG tag 'ID' (value: WTCHG_12341) duplicated in CO field (value: 4629/10) -- ignoring CO value
2011-05-20 01:15:08,175 - WARNING - Found RG tag 'SM' (value: 311) duplicated in CO field (value: 4629/10) -- ignoring CO value
2011-05-20 01:15:08,175 - WARNING - Found RG tag 'ID' (value: WTCHG_12341) duplicated in CO field (value: 4629/10) -- ignoring CO value
2011-05-20 01:15:08,229 - WARNING - Found RG tag 'SM' (value: 311) duplicated in CO field (value: 4629/10) -- ignoring CO value
2011-05-20 01:15:08,229 - WARNING - Found RG tag 'ID' (value: WTCHG_12341) duplicated in CO field (value: 4629/10) -- ignoring CO value
2011-05-20 01:15:08,229 - WARNING - Found RG tag 'SM' (value: 311) duplicated in CO field (value: 4629/10) -- ignoring CO value
2011-05-20 01:15:08,229 - WARNING - Found RG tag 'ID' (value: WTCHG_12341) duplicated in CO field (value: 4629/10) -- ignoring CO value
2011-05-20 01:15:08,229 - WARNING - Found RG tag 'SM' (value: 311) duplicated in CO field (value: 4629/10) -- ignoring CO value
2011-05-20 01:15:08,229 - WARNING - Found RG tag 'ID' (value: WTCHG_12341) duplicated in CO field (value: 4629/10) -- ignoring CO value
2011-05-20 01:15:08,229 - WARNING - Found RG tag 'SM' (value: 311) duplicated in CO field (value: 4629/10) -- ignoring CO value
2011-05-20 01:15:08,229 - WARNING - Found RG tag 'ID' (value: WTCHG_12341) duplicated in CO field (value: 4629/10) -- ignoring CO value
2011-05-20 01:15:08,239 - INFO - Reading data from BAM file WTCHG_12341.bam. All reads in file will be read
2011-05-20 01:15:08,282 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:2990041-23010041
2011-05-20 01:15:20,665 - INFO - Processed 100000 reads so far
2011-05-20 01:15:30,719 - INFO - Processed 200000 reads so far
2011-05-20 01:15:41,967 - INFO - Processed 300000 reads so far
2011-05-20 01:15:53,578 - INFO - Processed 400000 reads so far
2011-05-20 01:16:03,446 - INFO - Processed 500000 reads so far
2011-05-20 01:16:13,353 - INFO - Processed 600000 reads so far
2011-05-20 01:16:24,084 - INFO - Processed 700000 reads so far
2011-05-20 01:16:36,862 - INFO - Processed 800000 reads so far
2011-05-20 01:16:46,016 - INFO - Processed 900000 reads so far
2011-05-20 01:16:55,119 - INFO - Processed 1000000 reads so far
2011-05-20 01:17:04,990 - INFO - Processed 1100000 reads so far
2011-05-20 01:17:15,963 - INFO - Processed 1200000 reads so far
2011-05-20 01:17:22,775 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:22990045-43010045
2011-05-20 01:17:25,427 - INFO - Processed 1300000 reads so far
2011-05-20 01:17:36,485 - INFO - Processed 1400000 reads so far
2011-05-20 01:17:48,358 - INFO - Processed 1500000 reads so far
2011-05-20 01:17:57,092 - INFO - Processed 1600000 reads so far
2011-05-20 01:18:08,063 - INFO - Processed 1700000 reads so far
2011-05-20 01:18:16,917 - INFO - Processed 1800000 reads so far
2011-05-20 01:18:27,314 - INFO - Processed 1900000 reads so far
2011-05-20 01:18:35,688 - INFO - Processed 2000000 reads so far
2011-05-20 01:18:45,555 - INFO - Processed 2100000 reads so far
2011-05-20 01:18:54,138 - INFO - Processed 2200000 reads so far
2011-05-20 01:19:02,386 - INFO - Processed 2300000 reads so far
2011-05-20 01:19:11,265 - INFO - Processed 2400000 reads so far
2011-05-20 01:19:22,019 - INFO - Processed 2500000 reads so far
2011-05-20 01:19:24,551 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:42990046-63010046
2011-05-20 01:19:32,624 - INFO - Processed 2600000 reads so far
2011-05-20 01:19:43,125 - INFO - Processed 2700000 reads so far
2011-05-20 01:19:59,896 - INFO - Processed 2800000 reads so far
2011-05-20 01:20:11,181 - INFO - Processed 2900000 reads so far
2011-05-20 01:20:24,495 - INFO - Processed 3000000 reads so far
2011-05-20 01:20:32,883 - INFO - Processed 3100000 reads so far
2011-05-20 01:20:44,162 - INFO - Processed 3200000 reads so far
2011-05-20 01:20:53,972 - INFO - Processed 3300000 reads so far
2011-05-20 01:21:05,027 - INFO - Processed 3400000 reads so far
2011-05-20 01:21:17,418 - INFO - Processed 3500000 reads so far
2011-05-20 01:21:29,185 - INFO - Processed 3600000 reads so far
2011-05-20 01:21:41,404 - INFO - Processed 3700000 reads so far
2011-05-20 01:21:46,451 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:62990048-83010048
2011-05-20 01:21:51,832 - INFO - Processed 3800000 reads so far
2011-05-20 01:22:03,286 - INFO - Processed 3900000 reads so far
2011-05-20 01:22:16,277 - INFO - Processed 4000000 reads so far
2011-05-20 01:22:27,543 - INFO - Processed 4100000 reads so far
2011-05-20 01:22:36,616 - INFO - Processed 4200000 reads so far
2011-05-20 01:22:46,532 - INFO - Processed 4300000 reads so far
2011-05-20 01:22:57,799 - INFO - Processed 4400000 reads so far
2011-05-20 01:23:09,281 - INFO - Processed 4500000 reads so far
2011-05-20 01:23:23,575 - INFO - Processed 4600000 reads so far
2011-05-20 01:23:32,376 - INFO - Processed 4700000 reads so far
2011-05-20 01:23:42,687 - INFO - Processed 4800000 reads so far
2011-05-20 01:23:56,616 - INFO - Processed 4900000 reads so far
2011-05-20 01:24:02,513 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:82990049-103010049
2011-05-20 01:24:08,488 - INFO - Processed 5000000 reads so far
2011-05-20 01:24:19,572 - INFO - Processed 5100000 reads so far
2011-05-20 01:24:32,281 - INFO - Processed 5200000 reads so far
2011-05-20 01:24:41,810 - INFO - Processed 5300000 reads so far
2011-05-20 01:24:51,167 - INFO - Processed 5400000 reads so far
2011-05-20 01:25:00,046 - INFO - Processed 5500000 reads so far
2011-05-20 01:25:10,301 - INFO - Processed 5600000 reads so far
2011-05-20 01:25:20,053 - INFO - Processed 5700000 reads so far
2011-05-20 01:25:29,075 - INFO - Processed 5800000 reads so far
2011-05-20 01:25:37,645 - INFO - Processed 5900000 reads so far
2011-05-20 01:25:47,339 - INFO - Processed 6000000 reads so far
2011-05-20 01:25:56,697 - INFO - Processed 6100000 reads so far
2011-05-20 01:26:04,770 - INFO - Processed 6200000 reads so far
2011-05-20 01:26:05,300 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:102990065-123010065
2011-05-20 01:26:15,366 - INFO - Processed 6300000 reads so far
2011-05-20 01:26:24,109 - INFO - Processed 6400000 reads so far
2011-05-20 01:26:33,686 - INFO - Processed 6500000 reads so far
2011-05-20 01:26:41,890 - INFO - Processed 6600000 reads so far
2011-05-20 01:26:50,676 - INFO - Processed 6700000 reads so far
2011-05-20 01:26:59,934 - INFO - Processed 6800000 reads so far
2011-05-20 01:27:10,982 - INFO - Processed 6900000 reads so far
2011-05-20 01:27:19,213 - INFO - Processed 7000000 reads so far
2011-05-20 01:27:29,291 - INFO - Processed 7100000 reads so far
2011-05-20 01:27:37,946 - INFO - Processed 7200000 reads so far
2011-05-20 01:27:46,006 - INFO - Processed 7300000 reads so far
2011-05-20 01:27:54,295 - INFO - Processed 7400000 reads so far
2011-05-20 01:27:57,648 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:122990066-143010066
2011-05-20 01:28:06,669 - INFO - Processed 7500000 reads so far
2011-05-20 01:28:18,204 - INFO - Processed 7600000 reads so far
2011-05-20 01:28:32,802 - INFO - Processed 7700000 reads so far
2011-05-20 01:28:43,201 - INFO - Processed 7800000 reads so far
2011-05-20 01:28:51,507 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:2990003-23010003
2011-05-20 01:28:54,927 - INFO - Processed 7900000 reads so far
2011-05-20 01:29:05,620 - INFO - Processed 8000000 reads so far
2011-05-20 01:29:15,361 - INFO - Processed 8100000 reads so far
2011-05-20 01:29:22,797 - INFO - Processed 8200000 reads so far
2011-05-20 01:29:31,344 - INFO - Processed 8300000 reads so far
2011-05-20 01:29:42,167 - INFO - Processed 8400000 reads so far
2011-05-20 01:29:52,869 - INFO - Processed 8500000 reads so far
2011-05-20 01:30:02,562 - INFO - Processed 8600000 reads so far
2011-05-20 01:30:13,308 - INFO - Processed 8700000 reads so far
2011-05-20 01:30:23,342 - INFO - Processed 8800000 reads so far
2011-05-20 01:30:34,153 - INFO - Processed 8900000 reads so far
2011-05-20 01:30:45,131 - INFO - Processed 9000000 reads so far
2011-05-20 01:30:53,809 - INFO - Processed 9100000 reads so far
2011-05-20 01:31:02,109 - INFO - Processed 9200000 reads so far
2011-05-20 01:31:12,376 - INFO - Processed 9300000 reads so far
2011-05-20 01:31:13,888 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:22990025-43010025
2011-05-20 01:31:22,784 - INFO - Processed 9400000 reads so far
2011-05-20 01:31:41,115 - INFO - Processed 9500000 reads so far
2011-05-20 01:31:50,130 - INFO - Processed 9600000 reads so far
2011-05-20 01:32:00,682 - INFO - Processed 9700000 reads so far
2011-05-20 01:32:12,469 - INFO - Processed 9800000 reads so far
2011-05-20 01:32:23,271 - INFO - Processed 9900000 reads so far
2011-05-20 01:32:32,585 - INFO - Processed 10000000 reads so far
2011-05-20 01:32:46,886 - INFO - Processed 10100000 reads so far
2011-05-20 01:32:58,884 - INFO - Processed 10200000 reads so far
2011-05-20 01:33:09,674 - INFO - Processed 10300000 reads so far
2011-05-20 01:33:20,708 - INFO - Processed 10400000 reads so far
2011-05-20 01:33:30,043 - INFO - Processed 10500000 reads so far
2011-05-20 01:33:36,282 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:42990080-63010080
2011-05-20 01:33:40,958 - INFO - Processed 10600000 reads so far
2011-05-20 01:33:52,199 - INFO - Processed 10700000 reads so far
2011-05-20 01:34:01,833 - INFO - Processed 10800000 reads so far
2011-05-20 01:34:10,304 - INFO - Processed 10900000 reads so far
2011-05-20 01:34:21,285 - INFO - Processed 11000000 reads so far
2011-05-20 01:34:32,300 - INFO - Processed 11100000 reads so far
2011-05-20 01:34:40,747 - INFO - Processed 11200000 reads so far
2011-05-20 01:34:50,344 - INFO - Processed 11300000 reads so far
2011-05-20 01:35:00,338 - INFO - Processed 11400000 reads so far
2011-05-20 01:35:09,121 - INFO - Processed 11500000 reads so far
2011-05-20 01:35:19,288 - INFO - Processed 11600000 reads so far
2011-05-20 01:35:26,950 - INFO - Processed 11700000 reads so far
2011-05-20 01:35:34,718 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:62990091-83010091
2011-05-20 01:35:35,711 - INFO - Processed 11800000 reads so far
2011-05-20 01:35:46,465 - INFO - Processed 11900000 reads so far
2011-05-20 01:35:57,511 - INFO - Processed 12000000 reads so far
2011-05-20 01:36:06,003 - INFO - Processed 12100000 reads so far
2011-05-20 01:36:14,651 - INFO - Processed 12200000 reads so far
2011-05-20 01:36:23,052 - INFO - Processed 12300000 reads so far
2011-05-20 01:36:33,015 - INFO - Processed 12400000 reads so far
2011-05-20 01:36:42,867 - INFO - Processed 12500000 reads so far
2011-05-20 01:36:55,062 - INFO - Processed 12600000 reads so far
2011-05-20 01:37:02,991 - INFO - Processed 12700000 reads so far
2011-05-20 01:37:13,076 - INFO - Processed 12800000 reads so far
2011-05-20 01:37:21,787 - INFO - Processed 12900000 reads so far
2011-05-20 01:37:29,993 - INFO - Processed 13000000 reads so far
2011-05-20 01:37:30,663 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:82990095-103010095
2011-05-20 01:37:38,302 - INFO - Processed 13100000 reads so far
2011-05-20 01:37:46,717 - INFO - Processed 13200000 reads so far
2011-05-20 01:37:55,559 - INFO - Processed 13300000 reads so far
2011-05-20 01:38:05,358 - INFO - Processed 13400000 reads so far
2011-05-20 01:38:15,298 - INFO - Processed 13500000 reads so far
2011-05-20 01:38:23,366 - INFO - Processed 13600000 reads so far
2011-05-20 01:38:34,778 - INFO - Processed 13700000 reads so far
2011-05-20 01:38:45,847 - INFO - Processed 13800000 reads so far
2011-05-20 01:38:55,236 - INFO - Processed 13900000 reads so far
2011-05-20 01:39:08,416 - INFO - Processed 14000000 reads so far
2011-05-20 01:39:20,598 - INFO - Processed 14100000 reads so far
2011-05-20 01:39:30,213 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:102990127-123010127
2011-05-20 01:39:32,072 - INFO - Processed 14200000 reads so far
2011-05-20 01:39:45,194 - INFO - Processed 14300000 reads so far
2011-05-20 01:39:57,082 - INFO - Processed 14400000 reads so far
2011-05-20 01:40:08,021 - INFO - Processed 14500000 reads so far
2011-05-20 01:40:18,985 - INFO - Processed 14600000 reads so far
2011-05-20 01:40:31,114 - INFO - Processed 14700000 reads so far
2011-05-20 01:40:38,112 - INFO - Processed 14800000 reads so far
2011-05-20 01:40:46,370 - INFO - Processed 14900000 reads so far
2011-05-20 01:40:53,876 - INFO - Processed 15000000 reads so far
2011-05-20 01:41:01,771 - INFO - Processed 15100000 reads so far
2011-05-20 01:41:09,083 - INFO - Processed 15200000 reads so far
2011-05-20 01:41:15,730 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:2990098-23010098
2011-05-20 01:41:17,122 - INFO - Processed 15300000 reads so far
2011-05-20 01:41:25,696 - INFO - Processed 15400000 reads so far
2011-05-20 01:41:31,470 - INFO - Processed 15500000 reads so far
2011-05-20 01:41:39,177 - INFO - Processed 15600000 reads so far
2011-05-20 01:41:46,855 - INFO - Processed 15700000 reads so far
2011-05-20 01:41:54,940 - INFO - Processed 15800000 reads so far
2011-05-20 01:42:03,361 - INFO - Processed 15900000 reads so far
2011-05-20 01:42:11,978 - INFO - Processed 16000000 reads so far
2011-05-20 01:42:21,685 - INFO - Processed 16100000 reads so far
2011-05-20 01:42:31,199 - INFO - Processed 16200000 reads so far
2011-05-20 01:42:41,006 - INFO - Processed 16300000 reads so far
2011-05-20 01:42:50,844 - INFO - Processed 16400000 reads so far
2011-05-20 01:43:03,492 - INFO - Processed 16500000 reads so far
2011-05-20 01:43:11,432 - INFO - Processed 16600000 reads so far
2011-05-20 01:43:20,789 - INFO - Processed 16700000 reads so far
2011-05-20 01:43:26,426 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:22990202-43010202
2011-05-20 01:43:30,159 - INFO - Processed 16800000 reads so far
2011-05-20 01:43:39,910 - INFO - Processed 16900000 reads so far
2011-05-20 01:43:50,499 - INFO - Processed 17000000 reads so far
2011-05-20 01:44:01,192 - INFO - Processed 17100000 reads so far
2011-05-20 01:44:09,789 - INFO - Processed 17200000 reads so far
2011-05-20 01:44:21,817 - INFO - Processed 17300000 reads so far
2011-05-20 01:44:29,866 - INFO - Processed 17400000 reads so far
2011-05-20 01:44:38,227 - INFO - Processed 17500000 reads so far
2011-05-20 01:44:45,174 - INFO - Processed 17600000 reads so far
2011-05-20 01:44:55,735 - INFO - Processed 17700000 reads so far
2011-05-20 01:45:04,537 - INFO - Processed 17800000 reads so far
2011-05-20 01:45:15,135 - INFO - Processed 17900000 reads so far
2011-05-20 01:45:19,229 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:42990223-63010223
2011-05-20 01:45:27,119 - INFO - Processed 18000000 reads so far
2011-05-20 01:45:34,733 - INFO - Processed 18100000 reads so far
2011-05-20 01:45:44,917 - INFO - Processed 18200000 reads so far
2011-05-20 01:45:55,117 - INFO - Processed 18300000 reads so far
2011-05-20 01:46:05,462 - INFO - Processed 18400000 reads so far
2011-05-20 01:46:17,331 - INFO - Processed 18500000 reads so far
2011-05-20 01:46:29,437 - INFO - Processed 18600000 reads so far
2011-05-20 01:46:41,984 - INFO - Processed 18700000 reads so far
2011-05-20 01:46:52,058 - INFO - Processed 18800000 reads so far
2011-05-20 01:46:59,092 - INFO - Processed 18900000 reads so far
2011-05-20 01:47:09,096 - INFO - Processed 19000000 reads so far
2011-05-20 01:47:20,024 - INFO - Processed 19100000 reads so far
2011-05-20 01:47:27,372 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:62990229-83010229
2011-05-20 01:47:31,363 - INFO - Processed 19200000 reads so far
2011-05-20 01:47:42,262 - INFO - Processed 19300000 reads so far
2011-05-20 01:47:53,233 - INFO - Processed 19400000 reads so far
2011-05-20 01:48:04,090 - INFO - Processed 19500000 reads so far
2011-05-20 01:48:13,645 - INFO - Processed 19600000 reads so far
2011-05-20 01:48:22,330 - INFO - Processed 19700000 reads so far
2011-05-20 01:48:30,626 - INFO - Processed 19800000 reads so far
2011-05-20 01:48:41,743 - INFO - Processed 19900000 reads so far
2011-05-20 01:48:50,644 - INFO - Processed 20000000 reads so far
2011-05-20 01:48:58,931 - INFO - Processed 20100000 reads so far
2011-05-20 01:49:08,413 - INFO - Processed 20200000 reads so far
2011-05-20 01:49:17,137 - INFO - Processed 20300000 reads so far
2011-05-20 01:49:27,341 - INFO - Processed 20400000 reads so far
2011-05-20 01:49:28,054 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:82990230-103010230
2011-05-20 01:49:36,545 - INFO - Processed 20500000 reads so far
2011-05-20 01:49:45,692 - INFO - Processed 20600000 reads so far
2011-05-20 01:49:55,566 - INFO - Processed 20700000 reads so far
2011-05-20 01:50:03,987 - INFO - Processed 20800000 reads so far
2011-05-20 01:50:13,254 - INFO - Processed 20900000 reads so far
2011-05-20 01:50:21,530 - INFO - Processed 21000000 reads so far
2011-05-20 01:50:31,502 - INFO - Processed 21100000 reads so far
2011-05-20 01:50:39,141 - INFO - Processed 21200000 reads so far
2011-05-20 01:50:47,434 - INFO - Processed 21300000 reads so far
2011-05-20 01:50:56,722 - INFO - Processed 21400000 reads so far
2011-05-20 01:51:04,702 - INFO - Processed 21500000 reads so far
2011-05-20 01:51:15,294 - INFO - Processed 21600000 reads so far
2011-05-20 01:51:18,117 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:102990243-123010243
2011-05-20 01:51:22,780 - INFO - Processed 21700000 reads so far
2011-05-20 01:51:31,032 - INFO - Processed 21800000 reads so far
2011-05-20 01:51:38,885 - INFO - Processed 21900000 reads so far
2011-05-20 01:51:46,379 - INFO - Processed 22000000 reads so far
2011-05-20 01:51:53,902 - INFO - Processed 22100000 reads so far
2011-05-20 01:52:03,636 - INFO - Processed 22200000 reads so far
2011-05-20 01:52:14,969 - INFO - Processed 22300000 reads so far
2011-05-20 01:52:23,925 - INFO - Processed 22400000 reads so far
2011-05-20 01:52:30,776 - INFO - Processed 22500000 reads so far
2011-05-20 01:52:39,252 - INFO - Processed 22600000 reads so far
2011-05-20 01:52:49,037 - INFO - Processed 22700000 reads so far
2011-05-20 01:52:54,468 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:2990011-23010011
2011-05-20 01:53:00,001 - INFO - Processed 22800000 reads so far
2011-05-20 01:53:09,767 - INFO - Processed 22900000 reads so far
2011-05-20 01:53:19,517 - INFO - Processed 23000000 reads so far
2011-05-20 01:53:27,318 - INFO - Processed 23100000 reads so far
2011-05-20 01:53:35,428 - INFO - Processed 23200000 reads so far
2011-05-20 01:53:43,479 - INFO - Processed 23300000 reads so far
2011-05-20 01:53:52,144 - INFO - Processed 23400000 reads so far
2011-05-20 01:53:59,886 - INFO - Processed 23500000 reads so far
2011-05-20 01:54:06,775 - INFO - Processed 23600000 reads so far
2011-05-20 01:54:15,600 - INFO - Processed 23700000 reads so far
2011-05-20 01:54:24,004 - INFO - Processed 23800000 reads so far
2011-05-20 01:54:31,445 - INFO - Processed 23900000 reads so far
2011-05-20 01:54:37,798 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:22990051-43010051
2011-05-20 01:54:39,115 - INFO - Processed 24000000 reads so far
2011-05-20 01:54:51,871 - INFO - Processed 24100000 reads so far
2011-05-20 01:55:02,328 - INFO - Processed 24200000 reads so far
2011-05-20 01:55:12,790 - INFO - Processed 24300000 reads so far
2011-05-20 01:55:23,665 - INFO - Processed 24400000 reads so far
2011-05-20 01:55:34,700 - INFO - Processed 24500000 reads so far
2011-05-20 01:55:44,704 - INFO - Processed 24600000 reads so far
2011-05-20 01:55:53,411 - INFO - Processed 24700000 reads so far
2011-05-20 01:56:03,397 - INFO - Processed 24800000 reads so far
2011-05-20 01:56:10,864 - INFO - Processed 24900000 reads so far
2011-05-20 01:56:18,957 - INFO - Processed 25000000 reads so far
2011-05-20 01:56:27,001 - INFO - Processed 25100000 reads so far
2011-05-20 01:56:37,721 - INFO - Processed 25200000 reads so far
2011-05-20 01:56:43,579 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:42990064-63010064
2011-05-20 01:56:46,756 - INFO - Processed 25300000 reads so far
2011-05-20 01:56:55,809 - INFO - Processed 25400000 reads so far
2011-05-20 01:57:03,506 - INFO - Processed 25500000 reads so far
2011-05-20 01:57:12,919 - INFO - Processed 25600000 reads so far
2011-05-20 01:57:23,958 - INFO - Processed 25700000 reads so far
2011-05-20 01:57:34,757 - INFO - Processed 25800000 reads so far
2011-05-20 01:57:45,699 - INFO - Processed 25900000 reads so far
2011-05-20 01:57:57,134 - INFO - Processed 26000000 reads so far
2011-05-20 01:58:08,638 - INFO - Processed 26100000 reads so far
2011-05-20 01:58:20,305 - INFO - Processed 26200000 reads so far
2011-05-20 01:58:29,263 - INFO - Processed 26300000 reads so far
2011-05-20 01:58:39,923 - INFO - Processed 26400000 reads so far
2011-05-20 01:58:48,644 - INFO - Processed 26500000 reads so far
2011-05-20 01:58:48,809 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:62990077-83010077
2011-05-20 01:59:00,779 - INFO - Processed 26600000 reads so far
2011-05-20 01:59:11,617 - INFO - Processed 26700000 reads so far
2011-05-20 01:59:22,777 - INFO - Processed 26800000 reads so far
2011-05-20 01:59:33,859 - INFO - Processed 26900000 reads so far
2011-05-20 01:59:45,380 - INFO - Processed 27000000 reads so far
2011-05-20 01:59:58,094 - INFO - Processed 27100000 reads so far
2011-05-20 02:00:12,699 - INFO - Processed 27200000 reads so far
2011-05-20 02:00:23,837 - INFO - Processed 27300000 reads so far
2011-05-20 02:00:34,876 - INFO - Processed 27400000 reads so far
2011-05-20 02:00:45,783 - INFO - Processed 27500000 reads so far
2011-05-20 02:00:55,877 - INFO - Processed 27600000 reads so far
2011-05-20 02:01:05,698 - INFO - Processed 27700000 reads so far
2011-05-20 02:01:08,835 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:82990092-103010092
2011-05-20 02:01:15,128 - INFO - Processed 27800000 reads so far
2011-05-20 02:01:26,588 - INFO - Processed 27900000 reads so far
2011-05-20 02:01:40,618 - INFO - Processed 28000000 reads so far
2011-05-20 02:01:50,606 - INFO - Processed 28100000 reads so far
2011-05-20 02:01:59,663 - INFO - Processed 28200000 reads so far
2011-05-20 02:02:10,011 - INFO - Processed 28300000 reads so far
2011-05-20 02:02:19,260 - INFO - Processed 28400000 reads so far
2011-05-20 02:02:28,527 - INFO - Processed 28500000 reads so far
2011-05-20 02:02:39,191 - INFO - Processed 28600000 reads so far
2011-05-20 02:02:50,381 - INFO - Processed 28700000 reads so far
2011-05-20 02:03:02,519 - INFO - Processed 28800000 reads so far
2011-05-20 02:03:13,832 - INFO - Processed 28900000 reads so far
2011-05-20 02:03:19,789 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:102990109-123010109
2011-05-20 02:03:24,986 - INFO - Processed 29000000 reads so far
2011-05-20 02:03:35,252 - INFO - Processed 29100000 reads so far
2011-05-20 02:03:43,323 - INFO - Processed 29200000 reads so far
2011-05-20 02:03:53,002 - INFO - Processed 29300000 reads so far
2011-05-20 02:04:02,844 - INFO - Processed 29400000 reads so far
2011-05-20 02:04:13,332 - INFO - Processed 29500000 reads so far
2011-05-20 02:04:23,814 - INFO - Processed 29600000 reads so far
2011-05-20 02:04:32,576 - INFO - Processed 29700000 reads so far
2011-05-20 02:04:40,982 - INFO - Processed 29800000 reads so far
2011-05-20 02:04:52,367 - INFO - Processed 29900000 reads so far
2011-05-20 02:05:00,025 - INFO - Processed 30000000 reads so far
2011-05-20 02:05:04,040 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13_random:0-20010000
2011-05-20 02:05:05,537 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:2990011-23010011
2011-05-20 02:05:11,094 - INFO - Processed 30100000 reads so far
2011-05-20 02:05:22,418 - INFO - Processed 30200000 reads so far
2011-05-20 02:05:31,536 - INFO - Processed 30300000 reads so far
2011-05-20 02:05:40,279 - INFO - Processed 30400000 reads so far
2011-05-20 02:05:49,686 - INFO - Processed 30500000 reads so far
2011-05-20 02:05:59,256 - INFO - Processed 30600000 reads so far
2011-05-20 02:06:10,635 - INFO - Processed 30700000 reads so far
2011-05-20 02:06:23,592 - INFO - Processed 30800000 reads so far
2011-05-20 02:06:34,811 - INFO - Processed 30900000 reads so far
2011-05-20 02:06:47,250 - INFO - Processed 31000000 reads so far
2011-05-20 02:06:58,689 - INFO - Processed 31100000 reads so far
2011-05-20 02:07:10,169 - INFO - Processed 31200000 reads so far
2011-05-20 02:07:11,133 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:22990018-43010018
2011-05-20 02:07:21,879 - INFO - Processed 31300000 reads so far
2011-05-20 02:07:32,876 - INFO - Processed 31400000 reads so far
2011-05-20 02:07:44,130 - INFO - Processed 31500000 reads so far
2011-05-20 02:07:55,373 - INFO - Processed 31600000 reads so far
2011-05-20 02:08:06,643 - INFO - Processed 31700000 reads so far
2011-05-20 02:08:17,068 - INFO - Processed 31800000 reads so far
2011-05-20 02:08:25,766 - INFO - Processed 31900000 reads so far
2011-05-20 02:08:35,603 - INFO - Processed 32000000 reads so far
2011-05-20 02:08:44,628 - INFO - Processed 32100000 reads so far
2011-05-20 02:08:52,487 - INFO - Processed 32200000 reads so far
2011-05-20 02:09:01,828 - INFO - Processed 32300000 reads so far
2011-05-20 02:09:13,473 - INFO - Processed 32400000 reads so far
2011-05-20 02:09:17,553 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:42990117-63010117
2011-05-20 02:09:25,621 - INFO - Processed 32500000 reads so far
2011-05-20 02:09:50,312 - INFO - Processed 32600000 reads so far
2011-05-20 02:10:13,600 - INFO - Processed 32700000 reads so far
2011-05-20 02:10:27,233 - INFO - Processed 32800000 reads so far
2011-05-20 02:10:46,564 - INFO - Processed 32900000 reads so far
2011-05-20 02:10:57,337 - INFO - Processed 33000000 reads so far
2011-05-20 02:11:08,293 - INFO - Processed 33100000 reads so far
2011-05-20 02:11:35,539 - INFO - Processed 33200000 reads so far
2011-05-20 02:11:54,951 - INFO - Processed 33300000 reads so far
2011-05-20 02:12:08,269 - INFO - Processed 33400000 reads so far
2011-05-20 02:12:17,429 - INFO - Processed 33500000 reads so far
2011-05-20 02:12:27,544 - INFO - Processed 33600000 reads so far
2011-05-20 02:12:37,794 - INFO - Processed 33700000 reads so far
2011-05-20 02:12:43,754 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:62990158-83010158
2011-05-20 02:12:58,944 - INFO - Processed 33800000 reads so far
2011-05-20 02:13:27,811 - INFO - Processed 33900000 reads so far
2011-05-20 02:13:37,510 - INFO - Processed 34000000 reads so far
2011-05-20 02:13:50,587 - INFO - Processed 34100000 reads so far
2011-05-20 02:13:58,623 - INFO - Processed 34200000 reads so far
2011-05-20 02:14:14,386 - INFO - Processed 34300000 reads so far
2011-05-20 02:14:26,577 - INFO - Processed 34400000 reads so far
2011-05-20 02:14:36,884 - INFO - Processed 34500000 reads so far
2011-05-20 02:14:47,990 - INFO - Processed 34600000 reads so far
2011-05-20 02:15:04,017 - INFO - Processed 34700000 reads so far
2011-05-20 02:15:13,373 - INFO - Processed 34800000 reads so far
2011-05-20 02:15:44,879 - INFO - Processed 34900000 reads so far
2011-05-20 02:15:50,894 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:82990188-103010188
2011-05-20 02:15:55,713 - INFO - Processed 35000000 reads so far
2011-05-20 02:16:05,464 - INFO - Processed 35100000 reads so far
2011-05-20 02:16:13,652 - INFO - Processed 35200000 reads so far
2011-05-20 02:16:22,822 - INFO - Processed 35300000 reads so far
2011-05-20 02:16:34,922 - INFO - Processed 35400000 reads so far
2011-05-20 02:16:44,604 - INFO - Processed 35500000 reads so far
2011-05-20 02:16:55,454 - INFO - Processed 35600000 reads so far
2011-05-20 02:17:05,295 - INFO - Processed 35700000 reads so far
2011-05-20 02:17:15,867 - INFO - Processed 35800000 reads so far
2011-05-20 02:17:25,548 - INFO - Processed 35900000 reads so far
2011-05-20 02:17:36,127 - INFO - Processed 36000000 reads so far
2011-05-20 02:17:47,638 - INFO - Processed 36100000 reads so far
2011-05-20 02:17:54,068 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:102990230-123010230
2011-05-20 02:17:59,235 - INFO - Processed 36200000 reads so far
2011-05-20 02:18:09,159 - INFO - Processed 36300000 reads so far
2011-05-20 02:18:21,378 - INFO - Processed 36400000 reads so far
2011-05-20 02:18:31,916 - INFO - Processed 36500000 reads so far
2011-05-20 02:18:43,749 - INFO - Processed 36600000 reads so far
2011-05-20 02:18:55,336 - INFO - Processed 36700000 reads so far
2011-05-20 02:19:06,489 - INFO - Processed 36800000 reads so far
2011-05-20 02:19:17,645 - INFO - Processed 36900000 reads so far
2011-05-20 02:19:29,566 - INFO - Processed 37000000 reads so far
2011-05-20 02:19:40,213 - INFO - Processed 37100000 reads so far
2011-05-20 02:19:50,373 - INFO - Processed 37200000 reads so far
2011-05-20 02:20:02,738 - INFO - Processed 37300000 reads so far
2011-05-20 02:20:10,533 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:122990238-143010238
2011-05-20 02:20:13,207 - INFO - Processed 37400000 reads so far
2011-05-20 02:20:23,348 - INFO - Processed 37500000 reads so far
2011-05-20 02:20:24,362 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:2990002-23010002
2011-05-20 02:20:32,285 - INFO - Processed 37600000 reads so far
2011-05-20 02:20:43,106 - INFO - Processed 37700000 reads so far
2011-05-20 02:20:52,840 - INFO - Processed 37800000 reads so far
2011-05-20 02:21:02,558 - INFO - Processed 37900000 reads so far
2011-05-20 02:21:13,237 - INFO - Processed 38000000 reads so far
2011-05-20 02:21:24,289 - INFO - Processed 38100000 reads so far
2011-05-20 02:21:34,344 - INFO - Processed 38200000 reads so far
2011-05-20 02:21:47,233 - INFO - Processed 38300000 reads so far
2011-05-20 02:21:55,618 - INFO - Processed 38400000 reads so far
2011-05-20 02:22:03,966 - INFO - Processed 38500000 reads so far
2011-05-20 02:22:11,391 - INFO - Processed 38600000 reads so far
2011-05-20 02:22:20,655 - INFO - Processed 38700000 reads so far
2011-05-20 02:22:23,945 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:22990029-43010029
2011-05-20 02:22:28,699 - INFO - Processed 38800000 reads so far
2011-05-20 02:22:36,721 - INFO - Processed 38900000 reads so far
2011-05-20 02:22:44,902 - INFO - Processed 39000000 reads so far
2011-05-20 02:22:53,203 - INFO - Processed 39100000 reads so far
2011-05-20 02:23:01,906 - INFO - Processed 39200000 reads so far
2011-05-20 02:23:11,084 - INFO - Processed 39300000 reads so far
2011-05-20 02:23:19,253 - INFO - Processed 39400000 reads so far
2011-05-20 02:23:27,360 - INFO - Processed 39500000 reads so far
2011-05-20 02:23:36,513 - INFO - Processed 39600000 reads so far
2011-05-20 02:23:45,679 - INFO - Processed 39700000 reads so far
2011-05-20 02:23:52,704 - INFO - Processed 39800000 reads so far
2011-05-20 02:24:01,804 - INFO - Processed 39900000 reads so far
2011-05-20 02:24:11,255 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:42990033-63010033
2011-05-20 02:24:11,363 - INFO - Processed 40000000 reads so far
2011-05-20 02:24:21,886 - INFO - Processed 40100000 reads so far
2011-05-20 02:24:31,609 - INFO - Processed 40200000 reads so far
2011-05-20 02:24:41,931 - INFO - Processed 40300000 reads so far
2011-05-20 02:24:52,385 - INFO - Processed 40400000 reads so far
2011-05-20 02:25:03,331 - INFO - Processed 40500000 reads so far
2011-05-20 02:25:15,611 - INFO - Processed 40600000 reads so far
2011-05-20 02:25:25,974 - INFO - Processed 40700000 reads so far
2011-05-20 02:25:37,159 - INFO - Processed 40800000 reads so far
2011-05-20 02:25:47,594 - INFO - Processed 40900000 reads so far
2011-05-20 02:25:59,209 - INFO - Processed 41000000 reads so far
2011-05-20 02:26:10,311 - INFO - Processed 41100000 reads so far
2011-05-20 02:26:22,527 - INFO - Processed 41200000 reads so far
2011-05-20 02:26:27,483 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:62990043-83010043
2011-05-20 02:26:33,540 - INFO - Processed 41300000 reads so far
2011-05-20 02:26:43,746 - INFO - Processed 41400000 reads so far
2011-05-20 02:26:56,310 - INFO - Processed 41500000 reads so far
2011-05-20 02:27:07,752 - INFO - Processed 41600000 reads so far
2011-05-20 02:27:18,950 - INFO - Processed 41700000 reads so far
2011-05-20 02:27:31,465 - INFO - Processed 41800000 reads so far
2011-05-20 02:27:42,493 - INFO - Processed 41900000 reads so far
2011-05-20 02:27:54,574 - INFO - Processed 42000000 reads so far
2011-05-20 02:28:05,151 - INFO - Processed 42100000 reads so far
2011-05-20 02:28:16,439 - INFO - Processed 42200000 reads so far
2011-05-20 02:28:27,565 - INFO - Processed 42300000 reads so far
2011-05-20 02:28:38,514 - INFO - Processed 42400000 reads so far
2011-05-20 02:28:47,527 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:82990057-103010057
2011-05-20 02:28:48,100 - INFO - Processed 42500000 reads so far
2011-05-20 02:28:55,883 - INFO - Processed 42600000 reads so far
2011-05-20 02:29:03,152 - INFO - Processed 42700000 reads so far
2011-05-20 02:29:13,208 - INFO - Processed 42800000 reads so far
2011-05-20 02:29:22,539 - INFO - Processed 42900000 reads so far
2011-05-20 02:29:30,901 - INFO - Processed 43000000 reads so far
2011-05-20 02:29:37,575 - INFO - Processed 43100000 reads so far
2011-05-20 02:29:44,240 - INFO - Processed 43200000 reads so far
2011-05-20 02:29:51,123 - INFO - Processed 43300000 reads so far
2011-05-20 02:30:00,822 - INFO - Processed 43400000 reads so far
2011-05-20 02:30:09,633 - INFO - Processed 43500000 reads so far
2011-05-20 02:30:17,322 - INFO - Processed 43600000 reads so far
2011-05-20 02:30:23,982 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:102990075-123010075
2011-05-20 02:30:24,427 - INFO - Processed 43700000 reads so far
2011-05-20 02:30:25,975 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:2990011-23010011
2011-05-20 02:30:31,521 - INFO - Processed 43800000 reads so far
2011-05-20 02:30:39,612 - INFO - Processed 43900000 reads so far
2011-05-20 02:30:48,447 - INFO - Processed 44000000 reads so far
2011-05-20 02:30:56,141 - INFO - Processed 44100000 reads so far
2011-05-20 02:31:11,040 - INFO - Processed 44200000 reads so far
2011-05-20 02:31:20,105 - INFO - Processed 44300000 reads so far
2011-05-20 02:31:31,306 - INFO - Processed 44400000 reads so far
2011-05-20 02:31:42,140 - INFO - Processed 44500000 reads so far
2011-05-20 02:31:54,202 - INFO - Processed 44600000 reads so far
2011-05-20 02:32:05,477 - INFO - Processed 44700000 reads so far
2011-05-20 02:32:18,719 - INFO - Processed 44800000 reads so far
2011-05-20 02:32:29,807 - INFO - Processed 44900000 reads so far
2011-05-20 02:32:40,866 - INFO - Processed 45000000 reads so far
2011-05-20 02:32:43,092 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:22990029-43010029
2011-05-20 02:32:52,067 - INFO - Processed 45100000 reads so far
2011-05-20 02:33:04,540 - INFO - Processed 45200000 reads so far
2011-05-20 02:33:16,644 - INFO - Processed 45300000 reads so far
2011-05-20 02:33:27,561 - INFO - Processed 45400000 reads so far
2011-05-20 02:33:39,089 - INFO - Processed 45500000 reads so far
2011-05-20 02:33:50,218 - INFO - Processed 45600000 reads so far
2011-05-20 02:34:01,548 - INFO - Processed 45700000 reads so far
2011-05-20 02:34:14,626 - INFO - Processed 45800000 reads so far
2011-05-20 02:34:25,597 - INFO - Processed 45900000 reads so far
2011-05-20 02:34:37,230 - INFO - Processed 46000000 reads so far
2011-05-20 02:34:48,354 - INFO - Processed 46100000 reads so far
2011-05-20 02:35:00,408 - INFO - Processed 46200000 reads so far
2011-05-20 02:35:08,337 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:42990048-63010048
2011-05-20 02:35:11,473 - INFO - Processed 46300000 reads so far
2011-05-20 02:35:22,696 - INFO - Processed 46400000 reads so far
2011-05-20 02:35:33,444 - INFO - Processed 46500000 reads so far
2011-05-20 02:35:43,954 - INFO - Processed 46600000 reads so far
2011-05-20 02:35:53,451 - INFO - Processed 46700000 reads so far
2011-05-20 02:36:01,870 - INFO - Processed 46800000 reads so far
2011-05-20 02:36:11,712 - INFO - Processed 46900000 reads so far
2011-05-20 02:36:22,110 - INFO - Processed 47000000 reads so far
2011-05-20 02:36:32,367 - INFO - Processed 47100000 reads so far
2011-05-20 02:36:43,017 - INFO - Processed 47200000 reads so far
2011-05-20 02:36:57,937 - INFO - Processed 47300000 reads so far
2011-05-20 02:37:09,782 - INFO - Processed 47400000 reads so far
2011-05-20 02:37:19,753 - INFO - Processed 47500000 reads so far
2011-05-20 02:37:20,837 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:62990063-83010063
2011-05-20 02:37:30,654 - INFO - Processed 47600000 reads so far
2011-05-20 02:37:40,328 - INFO - Processed 47700000 reads so far
2011-05-20 02:37:51,080 - INFO - Processed 47800000 reads so far
2011-05-20 02:38:00,994 - INFO - Processed 47900000 reads so far
2011-05-20 02:38:10,961 - INFO - Processed 48000000 reads so far
2011-05-20 02:38:19,984 - INFO - Processed 48100000 reads so far
2011-05-20 02:38:29,340 - INFO - Processed 48200000 reads so far
2011-05-20 02:38:39,913 - INFO - Processed 48300000 reads so far
2011-05-20 02:38:49,314 - INFO - Processed 48400000 reads so far
2011-05-20 02:38:59,524 - INFO - Processed 48500000 reads so far
2011-05-20 02:39:08,881 - INFO - Processed 48600000 reads so far
2011-05-20 02:39:18,824 - INFO - Processed 48700000 reads so far
2011-05-20 02:39:21,474 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:82990065-103010065
2011-05-20 02:39:27,491 - INFO - Processed 48800000 reads so far
2011-05-20 02:39:36,672 - INFO - Processed 48900000 reads so far
2011-05-20 02:39:44,814 - INFO - Processed 49000000 reads so far
2011-05-20 02:39:53,684 - INFO - Processed 49100000 reads so far
2011-05-20 02:40:04,729 - INFO - Processed 49200000 reads so far
2011-05-20 02:40:15,469 - INFO - Processed 49300000 reads so far
2011-05-20 02:40:25,628 - INFO - Processed 49400000 reads so far
2011-05-20 02:40:36,187 - INFO - Processed 49500000 reads so far
2011-05-20 02:40:45,538 - INFO - Processed 49600000 reads so far
2011-05-20 02:40:53,256 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16_random:0-20010093
2011-05-20 02:40:53,298 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:2989976-23009976
2011-05-20 02:40:56,760 - INFO - Processed 49700000 reads so far
2011-05-20 02:41:07,019 - INFO - Processed 49800000 reads so far
2011-05-20 02:41:16,484 - INFO - Processed 49900000 reads so far
2011-05-20 02:41:27,584 - INFO - Processed 50000000 reads so far
2011-05-20 02:41:37,810 - INFO - Processed 50100000 reads so far
2011-05-20 02:41:49,078 - INFO - Processed 50200000 reads so far
2011-05-20 02:41:59,359 - INFO - Processed 50300000 reads so far
2011-05-20 02:42:09,362 - INFO - Processed 50400000 reads so far
2011-05-20 02:42:21,053 - INFO - Processed 50500000 reads so far
2011-05-20 02:42:30,496 - INFO - Processed 50600000 reads so far
2011-05-20 02:42:39,580 - INFO - Processed 50700000 reads so far
2011-05-20 02:42:49,644 - INFO - Processed 50800000 reads so far
2011-05-20 02:43:02,536 - INFO - Processed 50900000 reads so far
2011-05-20 02:43:09,703 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:22989980-43009980
2011-05-20 02:43:11,737 - INFO - Processed 51000000 reads so far
2011-05-20 02:43:22,957 - INFO - Processed 51100000 reads so far
2011-05-20 02:43:34,022 - INFO - Processed 51200000 reads so far
2011-05-20 02:43:45,355 - INFO - Processed 51300000 reads so far
2011-05-20 02:43:57,722 - INFO - Processed 51400000 reads so far
2011-05-20 02:44:08,960 - INFO - Processed 51500000 reads so far
2011-05-20 02:44:19,979 - INFO - Processed 51600000 reads so far
2011-05-20 02:44:31,681 - INFO - Processed 51700000 reads so far
2011-05-20 02:44:42,887 - INFO - Processed 51800000 reads so far
2011-05-20 02:44:53,832 - INFO - Processed 51900000 reads so far
2011-05-20 02:45:06,479 - INFO - Processed 52000000 reads so far
2011-05-20 02:45:17,168 - INFO - Processed 52100000 reads so far
2011-05-20 02:45:27,915 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:42990024-63010024
2011-05-20 02:45:28,046 - INFO - Processed 52200000 reads so far
2011-05-20 02:45:39,276 - INFO - Processed 52300000 reads so far
2011-05-20 02:45:50,339 - INFO - Processed 52400000 reads so far
2011-05-20 02:46:03,114 - INFO - Processed 52500000 reads so far
2011-05-20 02:46:13,800 - INFO - Processed 52600000 reads so far
2011-05-20 02:46:25,767 - INFO - Processed 52700000 reads so far
2011-05-20 02:46:36,956 - INFO - Processed 52800000 reads so far
2011-05-20 02:46:51,458 - INFO - Processed 52900000 reads so far
2011-05-20 02:47:02,547 - INFO - Processed 53000000 reads so far
2011-05-20 02:47:48,634 - INFO - Processed 53100000 reads so far
2011-05-20 02:48:02,121 - INFO - Processed 53200000 reads so far
2011-05-20 02:48:13,075 - INFO - Processed 53300000 reads so far
2011-05-20 02:48:23,461 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:62990031-83010031
2011-05-20 02:48:24,850 - INFO - Processed 53400000 reads so far
2011-05-20 02:48:35,536 - INFO - Processed 53500000 reads so far
2011-05-20 02:48:46,745 - INFO - Processed 53600000 reads so far
2011-05-20 02:48:56,718 - INFO - Processed 53700000 reads so far
2011-05-20 02:49:05,751 - INFO - Processed 53800000 reads so far
2011-05-20 02:49:17,159 - INFO - Processed 53900000 reads so far
2011-05-20 02:49:28,129 - INFO - Processed 54000000 reads so far
2011-05-20 02:49:39,184 - INFO - Processed 54100000 reads so far
2011-05-20 02:49:50,510 - INFO - Processed 54200000 reads so far
2011-05-20 02:49:59,749 - INFO - Processed 54300000 reads so far
2011-05-20 02:50:10,306 - INFO - Processed 54400000 reads so far
2011-05-20 02:50:22,749 - INFO - Processed 54500000 reads so far
2011-05-20 02:50:33,653 - INFO - Processed 54600000 reads so far
2011-05-20 02:50:38,009 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:82990189-103010189
2011-05-20 02:50:44,844 - INFO - Processed 54700000 reads so far
2011-05-20 02:50:56,142 - INFO - Processed 54800000 reads so far
2011-05-20 02:51:07,793 - INFO - Processed 54900000 reads so far
2011-05-20 02:51:19,174 - INFO - Processed 55000000 reads so far
2011-05-20 02:51:30,204 - INFO - Processed 55100000 reads so far
2011-05-20 02:51:40,973 - INFO - Processed 55200000 reads so far
2011-05-20 02:51:51,956 - INFO - Processed 55300000 reads so far
2011-05-20 02:52:01,460 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17_random:0-20010052
2011-05-20 02:52:02,831 - INFO - Processed 55400000 reads so far
2011-05-20 02:52:03,673 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:2989997-23009997
2011-05-20 02:52:13,180 - INFO - Processed 55500000 reads so far
2011-05-20 02:52:24,106 - INFO - Processed 55600000 reads so far
2011-05-20 02:52:35,006 - INFO - Processed 55700000 reads so far
2011-05-20 02:52:45,840 - INFO - Processed 55800000 reads so far
2011-05-20 02:52:56,759 - INFO - Processed 55900000 reads so far
2011-05-20 02:53:07,125 - INFO - Processed 56000000 reads so far
2011-05-20 02:53:15,159 - INFO - Processed 56100000 reads so far
2011-05-20 02:53:25,940 - INFO - Processed 56200000 reads so far
2011-05-20 02:53:36,688 - INFO - Processed 56300000 reads so far
2011-05-20 02:53:47,162 - INFO - Processed 56400000 reads so far
2011-05-20 02:53:56,103 - INFO - Processed 56500000 reads so far
2011-05-20 02:54:07,156 - INFO - Processed 56600000 reads so far
2011-05-20 02:54:15,117 - INFO - Processed 56700000 reads so far
2011-05-20 02:54:17,506 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:22990003-43010003
2011-05-20 02:54:24,759 - INFO - Processed 56800000 reads so far
2011-05-20 02:54:35,881 - INFO - Processed 56900000 reads so far
2011-05-20 02:54:44,887 - INFO - Processed 57000000 reads so far
2011-05-20 02:54:52,959 - INFO - Processed 57100000 reads so far
2011-05-20 02:55:02,349 - INFO - Processed 57200000 reads so far
2011-05-20 02:55:10,378 - INFO - Processed 57300000 reads so far
2011-05-20 02:55:17,374 - INFO - Processed 57400000 reads so far
2011-05-20 02:55:45,455 - INFO - Processed 57500000 reads so far
2011-05-20 02:55:55,085 - INFO - Processed 57600000 reads so far
2011-05-20 02:56:06,332 - INFO - Processed 57700000 reads so far
2011-05-20 02:56:17,637 - INFO - Processed 57800000 reads so far
2011-05-20 02:56:28,492 - INFO - Processed 57900000 reads so far
2011-05-20 02:56:38,846 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:42990012-63010012
2011-05-20 02:56:39,290 - INFO - Processed 58000000 reads so far
2011-05-20 02:56:50,129 - INFO - Processed 58100000 reads so far
2011-05-20 02:57:01,298 - INFO - Processed 58200000 reads so far
2011-05-20 02:57:10,740 - INFO - Processed 58300000 reads so far
2011-05-20 02:57:19,492 - INFO - Processed 58400000 reads so far
2011-05-20 02:57:28,806 - INFO - Processed 58500000 reads so far
2011-05-20 02:57:36,702 - INFO - Processed 58600000 reads so far
2011-05-20 02:57:46,844 - INFO - Processed 58700000 reads so far
2011-05-20 02:57:55,827 - INFO - Processed 58800000 reads so far
2011-05-20 02:58:04,945 - INFO - Processed 58900000 reads so far
2011-05-20 02:58:13,412 - INFO - Processed 59000000 reads so far
2011-05-20 02:58:21,880 - INFO - Processed 59100000 reads so far
2011-05-20 02:58:31,789 - INFO - Processed 59200000 reads so far
2011-05-20 02:58:35,888 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:62990050-83010050
2011-05-20 02:58:40,137 - INFO - Processed 59300000 reads so far
2011-05-20 02:58:48,531 - INFO - Processed 59400000 reads so far
2011-05-20 02:58:58,912 - INFO - Processed 59500000 reads so far
2011-05-20 02:59:07,674 - INFO - Processed 59600000 reads so far
2011-05-20 02:59:16,640 - INFO - Processed 59700000 reads so far
2011-05-20 02:59:25,497 - INFO - Processed 59800000 reads so far
2011-05-20 02:59:35,138 - INFO - Processed 59900000 reads so far
2011-05-20 02:59:44,340 - INFO - Processed 60000000 reads so far
2011-05-20 02:59:54,184 - INFO - Processed 60100000 reads so far
2011-05-20 03:00:04,083 - INFO - Processed 60200000 reads so far
2011-05-20 03:00:12,603 - INFO - Processed 60300000 reads so far
2011-05-20 03:00:21,615 - INFO - Processed 60400000 reads so far
2011-05-20 03:00:29,280 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:82990051-103010051
2011-05-20 03:00:31,385 - INFO - Processed 60500000 reads so far
2011-05-20 03:00:41,016 - INFO - Processed 60600000 reads so far
2011-05-20 03:00:49,300 - INFO - Processed 60700000 reads so far
2011-05-20 03:00:58,114 - INFO - Processed 60800000 reads so far
2011-05-20 03:01:06,458 - INFO - Processed 60900000 reads so far
2011-05-20 03:01:12,284 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:2990005-23010005
2011-05-20 03:01:15,430 - INFO - Processed 61000000 reads so far
2011-05-20 03:01:24,925 - INFO - Processed 61100000 reads so far
2011-05-20 03:01:38,901 - INFO - Processed 61200000 reads so far
2011-05-20 03:01:49,998 - INFO - Processed 61300000 reads so far
2011-05-20 03:01:58,863 - INFO - Processed 61400000 reads so far
2011-05-20 03:02:07,322 - INFO - Processed 61500000 reads so far
2011-05-20 03:02:15,682 - INFO - Processed 61600000 reads so far
2011-05-20 03:02:24,308 - INFO - Processed 61700000 reads so far
2011-05-20 03:02:33,315 - INFO - Processed 61800000 reads so far
2011-05-20 03:02:42,220 - INFO - Processed 61900000 reads so far
2011-05-20 03:02:50,002 - INFO - Processed 62000000 reads so far
2011-05-20 03:02:58,877 - INFO - Processed 62100000 reads so far
2011-05-20 03:03:04,130 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:22990026-43010026
2011-05-20 03:03:07,596 - INFO - Processed 62200000 reads so far
2011-05-20 03:03:16,211 - INFO - Processed 62300000 reads so far
2011-05-20 03:03:24,349 - INFO - Processed 62400000 reads so far
2011-05-20 03:03:32,738 - INFO - Processed 62500000 reads so far
2011-05-20 03:03:41,359 - INFO - Processed 62600000 reads so far
2011-05-20 03:03:51,751 - INFO - Processed 62700000 reads so far
2011-05-20 03:04:01,193 - INFO - Processed 62800000 reads so far
2011-05-20 03:04:10,040 - INFO - Processed 62900000 reads so far
2011-05-20 03:04:19,483 - INFO - Processed 63000000 reads so far
2011-05-20 03:04:30,134 - INFO - Processed 63100000 reads so far
2011-05-20 03:04:38,857 - INFO - Processed 63200000 reads so far
2011-05-20 03:04:47,843 - INFO - Processed 63300000 reads so far
2011-05-20 03:04:56,237 - INFO - Processed 63400000 reads so far
2011-05-20 03:04:56,267 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:42990042-63010042
2011-05-20 03:05:05,477 - INFO - Processed 63500000 reads so far
2011-05-20 03:05:14,789 - INFO - Processed 63600000 reads so far
2011-05-20 03:05:23,746 - INFO - Processed 63700000 reads so far
2011-05-20 03:05:32,664 - INFO - Processed 63800000 reads so far
2011-05-20 03:05:43,525 - INFO - Processed 63900000 reads so far
2011-05-20 03:05:53,747 - INFO - Processed 64000000 reads so far
2011-05-20 03:06:04,021 - INFO - Processed 64100000 reads so far
2011-05-20 03:06:14,119 - INFO - Processed 64200000 reads so far
2011-05-20 03:06:24,544 - INFO - Processed 64300000 reads so far
2011-05-20 03:06:35,069 - INFO - Processed 64400000 reads so far
2011-05-20 03:06:44,698 - INFO - Processed 64500000 reads so far
2011-05-20 03:06:48,070 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:2989972-23009972
2011-05-20 03:06:54,076 - INFO - Processed 64600000 reads so far
2011-05-20 03:07:03,984 - INFO - Processed 64700000 reads so far
2011-05-20 03:07:12,054 - INFO - Processed 64800000 reads so far
2011-05-20 03:07:19,749 - INFO - Processed 64900000 reads so far
2011-05-20 03:07:28,161 - INFO - Processed 65000000 reads so far
2011-05-20 03:07:36,360 - INFO - Processed 65100000 reads so far
2011-05-20 03:07:45,515 - INFO - Processed 65200000 reads so far
2011-05-20 03:07:54,377 - INFO - Processed 65300000 reads so far
2011-05-20 03:08:02,702 - INFO - Processed 65400000 reads so far
2011-05-20 03:08:11,641 - INFO - Processed 65500000 reads so far
2011-05-20 03:08:20,083 - INFO - Processed 65600000 reads so far
2011-05-20 03:08:30,537 - INFO - Processed 65700000 reads so far
2011-05-20 03:08:37,973 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:22990017-43010017
2011-05-20 03:08:38,911 - INFO - Processed 65800000 reads so far
2011-05-20 03:08:49,055 - INFO - Processed 65900000 reads so far
2011-05-20 03:08:56,774 - INFO - Processed 66000000 reads so far
2011-05-20 03:09:05,752 - INFO - Processed 66100000 reads so far
2011-05-20 03:09:15,112 - INFO - Processed 66200000 reads so far
2011-05-20 03:09:24,563 - INFO - Processed 66300000 reads so far
2011-05-20 03:09:32,912 - INFO - Processed 66400000 reads so far
2011-05-20 03:09:41,332 - INFO - Processed 66500000 reads so far
2011-05-20 03:09:49,162 - INFO - Processed 66600000 reads so far
2011-05-20 03:09:57,974 - INFO - Processed 66700000 reads so far
2011-05-20 03:10:07,402 - INFO - Processed 66800000 reads so far
2011-05-20 03:10:16,370 - INFO - Processed 66900000 reads so far
2011-05-20 03:10:25,215 - INFO - Processed 67000000 reads so far
2011-05-20 03:10:29,863 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:42990024-63010024
2011-05-20 03:10:35,277 - INFO - Processed 67100000 reads so far
2011-05-20 03:10:43,725 - INFO - Processed 67200000 reads so far
2011-05-20 03:10:53,178 - INFO - Processed 67300000 reads so far
2011-05-20 03:11:03,627 - INFO - Processed 67400000 reads so far
2011-05-20 03:11:11,624 - INFO - Processed 67500000 reads so far
2011-05-20 03:11:20,066 - INFO - Processed 67600000 reads so far
2011-05-20 03:11:29,353 - INFO - Processed 67700000 reads so far
2011-05-20 03:11:38,402 - INFO - Processed 67800000 reads so far
2011-05-20 03:11:47,688 - INFO - Processed 67900000 reads so far
2011-05-20 03:11:56,842 - INFO - Processed 68000000 reads so far
2011-05-20 03:12:07,391 - INFO - Processed 68100000 reads so far
2011-05-20 03:12:15,809 - INFO - Processed 68200000 reads so far
2011-05-20 03:12:23,750 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:62990037-83010037
2011-05-20 03:12:24,296 - INFO - Processed 68300000 reads so far
2011-05-20 03:12:32,526 - INFO - Processed 68400000 reads so far
2011-05-20 03:12:41,388 - INFO - Processed 68500000 reads so far
2011-05-20 03:12:51,739 - INFO - Processed 68600000 reads so far
2011-05-20 03:13:00,035 - INFO - Processed 68700000 reads so far
2011-05-20 03:13:08,774 - INFO - Processed 68800000 reads so far
2011-05-20 03:13:18,596 - INFO - Processed 68900000 reads so far
2011-05-20 03:13:27,287 - INFO - Processed 69000000 reads so far
2011-05-20 03:13:35,532 - INFO - Processed 69100000 reads so far
2011-05-20 03:13:43,929 - INFO - Processed 69200000 reads so far
2011-05-20 03:13:52,137 - INFO - Processed 69300000 reads so far
2011-05-20 03:14:01,146 - INFO - Processed 69400000 reads so far
2011-05-20 03:14:09,926 - INFO - Processed 69500000 reads so far
2011-05-20 03:14:14,212 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:82990038-103010038
2011-05-20 03:14:19,312 - INFO - Processed 69600000 reads so far
2011-05-20 03:14:30,384 - INFO - Processed 69700000 reads so far
2011-05-20 03:14:41,121 - INFO - Processed 69800000 reads so far
2011-05-20 03:14:52,001 - INFO - Processed 69900000 reads so far
2011-05-20 03:15:01,328 - INFO - Processed 70000000 reads so far
2011-05-20 03:15:10,752 - INFO - Processed 70100000 reads so far
2011-05-20 03:15:19,877 - INFO - Processed 70200000 reads so far
2011-05-20 03:15:28,146 - INFO - Processed 70300000 reads so far
2011-05-20 03:15:39,118 - INFO - Processed 70400000 reads so far
2011-05-20 03:15:47,105 - INFO - Processed 70500000 reads so far
2011-05-20 03:15:55,217 - INFO - Processed 70600000 reads so far
2011-05-20 03:16:05,016 - INFO - Processed 70700000 reads so far
2011-05-20 03:16:13,339 - INFO - Processed 70800000 reads so far
2011-05-20 03:16:14,794 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:102990063-123010063
2011-05-20 03:16:22,979 - INFO - Processed 70900000 reads so far
2011-05-20 03:16:32,815 - INFO - Processed 71000000 reads so far
2011-05-20 03:16:41,795 - INFO - Processed 71100000 reads so far
2011-05-20 03:16:50,890 - INFO - Processed 71200000 reads so far
2011-05-20 03:17:00,407 - INFO - Processed 71300000 reads so far
2011-05-20 03:17:08,519 - INFO - Processed 71400000 reads so far
2011-05-20 03:17:17,211 - INFO - Processed 71500000 reads so far
2011-05-20 03:17:25,126 - INFO - Processed 71600000 reads so far
2011-05-20 03:17:33,883 - INFO - Processed 71700000 reads so far
2011-05-20 03:17:42,202 - INFO - Processed 71800000 reads so far
2011-05-20 03:17:55,664 - INFO - Processed 71900000 reads so far
2011-05-20 03:18:05,353 - INFO - Processed 72000000 reads so far
2011-05-20 03:18:11,393 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:122990072-143010072
2011-05-20 03:18:16,149 - INFO - Processed 72100000 reads so far
2011-05-20 03:18:26,165 - INFO - Processed 72200000 reads so far
2011-05-20 03:18:36,037 - INFO - Processed 72300000 reads so far
2011-05-20 03:18:46,092 - INFO - Processed 72400000 reads so far
2011-05-20 03:18:56,597 - INFO - Processed 72500000 reads so far
2011-05-20 03:19:08,467 - INFO - Processed 72600000 reads so far
2011-05-20 03:19:18,635 - INFO - Processed 72700000 reads so far
2011-05-20 03:19:28,041 - INFO - Processed 72800000 reads so far
2011-05-20 03:19:37,842 - INFO - Processed 72900000 reads so far
2011-05-20 03:19:49,166 - INFO - Processed 73000000 reads so far
2011-05-20 03:19:59,921 - INFO - Processed 73100000 reads so far
2011-05-20 03:20:08,601 - INFO - Processed 73200000 reads so far
2011-05-20 03:20:17,483 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:142990078-163010078
2011-05-20 03:20:17,599 - INFO - Processed 73300000 reads so far
2011-05-20 03:20:26,468 - INFO - Processed 73400000 reads so far
2011-05-20 03:20:36,862 - INFO - Processed 73500000 reads so far
2011-05-20 03:20:46,125 - INFO - Processed 73600000 reads so far
2011-05-20 03:20:55,886 - INFO - Processed 73700000 reads so far
2011-05-20 03:21:04,105 - INFO - Processed 73800000 reads so far
2011-05-20 03:21:13,592 - INFO - Processed 73900000 reads so far
2011-05-20 03:21:22,209 - INFO - Processed 74000000 reads so far
2011-05-20 03:21:30,990 - INFO - Processed 74100000 reads so far
2011-05-20 03:21:39,398 - INFO - Processed 74200000 reads so far
2011-05-20 03:21:47,463 - INFO - Processed 74300000 reads so far
2011-05-20 03:21:55,869 - INFO - Processed 74400000 reads so far
2011-05-20 03:22:05,333 - INFO - Processed 74500000 reads so far
2011-05-20 03:22:06,920 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:162990079-183010079
2011-05-20 03:22:15,372 - INFO - Processed 74600000 reads so far
2011-05-20 03:22:23,514 - INFO - Processed 74700000 reads so far
2011-05-20 03:22:32,591 - INFO - Processed 74800000 reads so far
2011-05-20 03:22:42,767 - INFO - Processed 74900000 reads so far
2011-05-20 03:22:50,808 - INFO - Processed 75000000 reads so far
2011-05-20 03:22:59,800 - INFO - Processed 75100000 reads so far
2011-05-20 03:23:08,866 - INFO - Processed 75200000 reads so far
2011-05-20 03:23:18,087 - INFO - Processed 75300000 reads so far
2011-05-20 03:23:27,147 - INFO - Processed 75400000 reads so far
2011-05-20 03:23:35,423 - INFO - Processed 75500000 reads so far
2011-05-20 03:23:45,117 - INFO - Processed 75600000 reads so far
2011-05-20 03:23:54,215 - INFO - Processed 75700000 reads so far
2011-05-20 03:24:04,946 - INFO - Processed 75800000 reads so far
2011-05-20 03:24:05,937 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:182990092-203010092
2011-05-20 03:24:13,699 - INFO - Processed 75900000 reads so far
2011-05-20 03:24:22,370 - INFO - Processed 76000000 reads so far
2011-05-20 03:24:31,065 - INFO - Processed 76100000 reads so far
2011-05-20 03:24:39,892 - INFO - Processed 76200000 reads so far
2011-05-20 03:24:48,255 - INFO - Processed 76300000 reads so far
2011-05-20 03:24:56,495 - INFO - Processed 76400000 reads so far
2011-05-20 03:25:04,533 - INFO - Processed 76500000 reads so far
2011-05-20 03:25:13,630 - INFO - Processed 76600000 reads so far
2011-05-20 03:25:20,267 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1_random:0-20010000
2011-05-20 03:25:21,510 - INFO - Processed 76700000 reads so far
2011-05-20 03:25:31,529 - INFO - Processed 76800000 reads so far
2011-05-20 03:25:34,301 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:2990020-23010020
2011-05-20 03:25:39,554 - INFO - Processed 76900000 reads so far
2011-05-20 03:25:48,885 - INFO - Processed 77000000 reads so far
2011-05-20 03:25:57,196 - INFO - Processed 77100000 reads so far
2011-05-20 03:26:05,520 - INFO - Processed 77200000 reads so far
2011-05-20 03:26:13,357 - INFO - Processed 77300000 reads so far
2011-05-20 03:26:22,510 - INFO - Processed 77400000 reads so far
2011-05-20 03:26:30,791 - INFO - Processed 77500000 reads so far
2011-05-20 03:26:38,943 - INFO - Processed 77600000 reads so far
2011-05-20 03:26:47,206 - INFO - Processed 77700000 reads so far
2011-05-20 03:26:56,097 - INFO - Processed 77800000 reads so far
2011-05-20 03:27:04,519 - INFO - Processed 77900000 reads so far
2011-05-20 03:27:12,621 - INFO - Processed 78000000 reads so far
2011-05-20 03:27:20,785 - INFO - Processed 78100000 reads so far
2011-05-20 03:27:22,487 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:22990078-43010078
2011-05-20 03:27:29,446 - INFO - Processed 78200000 reads so far
2011-05-20 03:27:37,960 - INFO - Processed 78300000 reads so far
2011-05-20 03:27:46,815 - INFO - Processed 78400000 reads so far
2011-05-20 03:27:55,621 - INFO - Processed 78500000 reads so far
2011-05-20 03:28:05,274 - INFO - Processed 78600000 reads so far
2011-05-20 03:28:14,009 - INFO - Processed 78700000 reads so far
2011-05-20 03:28:22,531 - INFO - Processed 78800000 reads so far
2011-05-20 03:28:32,354 - INFO - Processed 78900000 reads so far
2011-05-20 03:28:43,296 - INFO - Processed 79000000 reads so far
2011-05-20 03:28:52,698 - INFO - Processed 79100000 reads so far
2011-05-20 03:29:01,117 - INFO - Processed 79200000 reads so far
2011-05-20 03:29:09,857 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:42990127-63010127
2011-05-20 03:29:10,035 - INFO - Processed 79300000 reads so far
2011-05-20 03:29:22,223 - INFO - Processed 79400000 reads so far
2011-05-20 03:29:30,853 - INFO - Processed 79500000 reads so far
2011-05-20 03:29:39,673 - INFO - Processed 79600000 reads so far
2011-05-20 03:29:48,118 - INFO - Processed 79700000 reads so far
2011-05-20 03:29:57,025 - INFO - Processed 79800000 reads so far
2011-05-20 03:30:05,866 - INFO - Processed 79900000 reads so far
2011-05-20 03:30:14,178 - INFO - Processed 80000000 reads so far
2011-05-20 03:30:22,910 - INFO - Processed 80100000 reads so far
2011-05-20 03:30:33,834 - INFO - Processed 80200000 reads so far
2011-05-20 03:30:42,366 - INFO - Processed 80300000 reads so far
2011-05-20 03:30:50,873 - INFO - Processed 80400000 reads so far
2011-05-20 03:31:00,071 - INFO - Processed 80500000 reads so far
2011-05-20 03:31:03,526 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:62990145-83010145
2011-05-20 03:31:08,711 - INFO - Processed 80600000 reads so far
2011-05-20 03:31:17,829 - INFO - Processed 80700000 reads so far
2011-05-20 03:31:27,288 - INFO - Processed 80800000 reads so far
2011-05-20 03:31:38,002 - INFO - Processed 80900000 reads so far
2011-05-20 03:31:48,580 - INFO - Processed 81000000 reads so far
2011-05-20 03:32:00,698 - INFO - Processed 81100000 reads so far
2011-05-20 03:32:11,605 - INFO - Processed 81200000 reads so far
2011-05-20 03:32:22,275 - INFO - Processed 81300000 reads so far
2011-05-20 03:32:34,429 - INFO - Processed 81400000 reads so far
2011-05-20 03:32:45,163 - INFO - Processed 81500000 reads so far
2011-05-20 03:32:57,564 - INFO - Processed 81600000 reads so far
2011-05-20 03:33:05,208 - INFO - Processed 81700000 reads so far
2011-05-20 03:33:10,927 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:82990149-103010149
2011-05-20 03:33:12,264 - INFO - Processed 81800000 reads so far
2011-05-20 03:33:20,382 - INFO - Processed 81900000 reads so far
2011-05-20 03:33:28,722 - INFO - Processed 82000000 reads so far
2011-05-20 03:33:35,726 - INFO - Processed 82100000 reads so far
2011-05-20 03:33:44,672 - INFO - Processed 82200000 reads so far
2011-05-20 03:33:54,907 - INFO - Processed 82300000 reads so far
2011-05-20 03:34:03,812 - INFO - Processed 82400000 reads so far
2011-05-20 03:34:10,517 - INFO - Processed 82500000 reads so far
2011-05-20 03:34:20,024 - INFO - Processed 82600000 reads so far
2011-05-20 03:34:28,671 - INFO - Processed 82700000 reads so far
2011-05-20 03:34:35,143 - INFO - Processed 82800000 reads so far
2011-05-20 03:34:42,723 - INFO - Processed 82900000 reads so far
2011-05-20 03:34:49,910 - INFO - Processed 83000000 reads so far
2011-05-20 03:34:56,514 - INFO - Processed 83100000 reads so far
2011-05-20 03:35:03,631 - INFO - Processed 83200000 reads so far
2011-05-20 03:35:11,837 - INFO - Processed 83300000 reads so far
2011-05-20 03:35:20,450 - INFO - Processed 83400000 reads so far
2011-05-20 03:35:28,397 - INFO - Processed 83500000 reads so far
2011-05-20 03:35:35,807 - INFO - Processed 83600000 reads so far
2011-05-20 03:35:45,606 - INFO - Processed 83700000 reads so far
2011-05-20 03:35:52,659 - INFO - Processed 83800000 reads so far
2011-05-20 03:35:58,600 - INFO - Processed 83900000 reads so far
2011-05-20 03:36:08,075 - INFO - Processed 84000000 reads so far
2011-05-20 03:36:16,417 - INFO - Processed 84100000 reads so far
2011-05-20 03:36:23,825 - INFO - Processed 84200000 reads so far
2011-05-20 03:36:30,528 - INFO - Processed 84300000 reads so far
2011-05-20 03:36:39,427 - INFO - Processed 84400000 reads so far
2011-05-20 03:36:46,221 - INFO - Processed 84500000 reads so far
2011-05-20 03:36:52,737 - INFO - Processed 84600000 reads so far
2011-05-20 03:37:01,817 - INFO - Processed 84700000 reads so far
2011-05-20 03:37:09,239 - INFO - Processed 84800000 reads so far
2011-05-20 03:37:16,318 - INFO - Processed 84900000 reads so far
2011-05-20 03:37:23,348 - INFO - Processed 85000000 reads so far
2011-05-20 03:37:29,555 - INFO - Processed 85100000 reads so far
2011-05-20 03:37:36,793 - INFO - Processed 85200000 reads so far
2011-05-20 03:37:44,624 - INFO - Processed 85300000 reads so far
2011-05-20 03:37:51,444 - INFO - Processed 85400000 reads so far
2011-05-20 03:37:59,291 - INFO - Processed 85500000 reads so far
2011-05-20 03:38:07,706 - INFO - Processed 85600000 reads so far
2011-05-20 03:38:14,348 - INFO - Processed 85700000 reads so far
2011-05-20 03:38:21,411 - INFO - Processed 85800000 reads so far
2011-05-20 03:38:29,498 - INFO - Processed 85900000 reads so far
2011-05-20 03:38:36,986 - INFO - Processed 86000000 reads so far
2011-05-20 03:38:44,921 - INFO - Processed 86100000 reads so far
2011-05-20 03:38:51,853 - INFO - Processed 86200000 reads so far
2011-05-20 03:38:58,200 - INFO - Processed 86300000 reads so far
2011-05-20 03:39:05,996 - INFO - Processed 86400000 reads so far
2011-05-20 03:39:12,714 - INFO - Processed 86500000 reads so far
2011-05-20 03:39:21,850 - INFO - Processed 86600000 reads so far
2011-05-20 03:39:28,531 - INFO - Processed 86700000 reads so far
2011-05-20 03:39:35,037 - INFO - Processed 86800000 reads so far
2011-05-20 03:39:43,198 - INFO - Processed 86900000 reads so far
2011-05-20 03:39:51,401 - INFO - Processed 87000000 reads so far
2011-05-20 03:39:58,116 - INFO - Processed 87100000 reads so far
2011-05-20 03:40:04,640 - INFO - Processed 87200000 reads so far
2011-05-20 03:40:10,994 - INFO - Processed 87300000 reads so far
2011-05-20 03:40:17,885 - INFO - Processed 87400000 reads so far
2011-05-20 03:40:26,850 - INFO - Processed 87500000 reads so far
2011-05-20 03:40:34,199 - INFO - Processed 87600000 reads so far
2011-05-20 03:40:42,263 - INFO - Processed 87700000 reads so far
2011-05-20 03:40:50,394 - INFO - Processed 87800000 reads so far
2011-05-20 03:40:57,881 - INFO - Processed 87900000 reads so far
2011-05-20 03:41:05,803 - INFO - Processed 88000000 reads so far
2011-05-20 03:41:12,819 - INFO - Processed 88100000 reads so far
2011-05-20 03:41:20,727 - INFO - Processed 88200000 reads so far
2011-05-20 03:41:28,082 - INFO - Processed 88300000 reads so far
2011-05-20 03:41:36,571 - INFO - Processed 88400000 reads so far
2011-05-20 03:41:44,832 - INFO - Processed 88500000 reads so far
2011-05-20 03:41:52,579 - INFO - Processed 88600000 reads so far
2011-05-20 03:42:00,488 - INFO - Processed 88700000 reads so far
2011-05-20 03:42:12,032 - INFO - Processed 88800000 reads so far
2011-05-20 03:42:22,217 - INFO - Processed 88900000 reads so far
2011-05-20 03:42:30,520 - INFO - Processed 89000000 reads so far
2011-05-20 03:42:38,708 - INFO - Processed 89100000 reads so far
2011-05-20 03:42:46,838 - INFO - Processed 89200000 reads so far
2011-05-20 03:42:54,373 - INFO - Processed 89300000 reads so far
2011-05-20 03:43:03,025 - INFO - Processed 89400000 reads so far
2011-05-20 03:43:13,872 - INFO - Processed 89500000 reads so far
2011-05-20 03:43:21,521 - INFO - Processed 89600000 reads so far
2011-05-20 03:43:29,483 - INFO - Processed 89700000 reads so far
2011-05-20 03:43:36,744 - INFO - Processed 89800000 reads so far
2011-05-20 03:43:45,791 - INFO - Processed 89900000 reads so far
2011-05-20 03:43:54,973 - INFO - Processed 90000000 reads so far
2011-05-20 03:44:01,984 - INFO - Processed 90100000 reads so far
2011-05-20 03:44:07,902 - INFO - Processed 90200000 reads so far
2011-05-20 03:44:15,442 - INFO - Processed 90300000 reads so far
2011-05-20 03:44:24,625 - INFO - Processed 90400000 reads so far
2011-05-20 03:44:34,887 - INFO - Processed 90500000 reads so far
2011-05-20 03:44:45,648 - INFO - Processed 90600000 reads so far
2011-05-20 03:44:54,784 - INFO - Processed 90700000 reads so far
2011-05-20 03:45:02,125 - INFO - Processed 90800000 reads so far
2011-05-20 03:45:11,931 - INFO - Processed 90900000 reads so far
2011-05-20 03:45:20,429 - INFO - Processed 91000000 reads so far
2011-05-20 03:45:29,329 - INFO - Processed 91100000 reads so far
2011-05-20 03:45:38,190 - INFO - Processed 91200000 reads so far
2011-05-20 03:45:46,830 - INFO - Processed 91300000 reads so far
2011-05-20 03:45:57,722 - INFO - Processed 91400000 reads so far
2011-05-20 03:46:07,228 - INFO - Processed 91500000 reads so far
2011-05-20 03:46:17,011 - INFO - Processed 91600000 reads so far
2011-05-20 03:46:28,299 - INFO - Processed 91700000 reads so far
2011-05-20 03:46:36,821 - INFO - Processed 91800000 reads so far
2011-05-20 03:46:44,737 - INFO - Processed 91900000 reads so far
2011-05-20 03:46:54,153 - INFO - Processed 92000000 reads so far
2011-05-20 03:47:03,590 - INFO - Processed 92100000 reads so far
2011-05-20 03:47:12,962 - INFO - Processed 92200000 reads so far
2011-05-20 03:47:22,664 - INFO - Processed 92300000 reads so far
2011-05-20 03:47:33,532 - INFO - Processed 92400000 reads so far
2011-05-20 03:47:43,055 - INFO - Processed 92500000 reads so far
2011-05-20 03:47:52,524 - INFO - Processed 92600000 reads so far
2011-05-20 03:48:02,143 - INFO - Processed 92700000 reads so far
2011-05-20 03:48:13,163 - INFO - Processed 92800000 reads so far
2011-05-20 03:48:22,637 - INFO - Processed 92900000 reads so far
2011-05-20 03:48:29,912 - INFO - Processed 93000000 reads so far
2011-05-20 03:48:39,366 - INFO - Processed 93100000 reads so far
2011-05-20 03:48:50,885 - INFO - Processed 93200000 reads so far
2011-05-20 03:49:02,006 - INFO - Processed 93300000 reads so far
2011-05-20 03:49:02,490 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:102990171-123010171
2011-05-20 03:49:13,520 - INFO - Processed 93400000 reads so far
2011-05-20 03:49:24,803 - INFO - Processed 93500000 reads so far
2011-05-20 03:49:35,871 - INFO - Processed 93600000 reads so far
2011-05-20 03:49:46,839 - INFO - Processed 93700000 reads so far
2011-05-20 03:49:59,269 - INFO - Processed 93800000 reads so far
2011-05-20 03:50:10,409 - INFO - Processed 93900000 reads so far
2011-05-20 03:50:20,037 - INFO - Processed 94000000 reads so far
2011-05-20 03:50:27,717 - INFO - Processed 94100000 reads so far
2011-05-20 03:50:38,155 - INFO - Processed 94200000 reads so far
2011-05-20 03:50:49,344 - INFO - Processed 94300000 reads so far
2011-05-20 03:51:00,642 - INFO - Processed 94400000 reads so far
2011-05-20 03:51:09,997 - INFO - Processed 94500000 reads so far
2011-05-20 03:51:13,808 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:122990174-143010174
2011-05-20 03:51:18,028 - INFO - Processed 94600000 reads so far
2011-05-20 03:51:28,208 - INFO - Processed 94700000 reads so far
2011-05-20 03:51:37,288 - INFO - Processed 94800000 reads so far
2011-05-20 03:51:48,253 - INFO - Processed 94900000 reads so far
2011-05-20 03:51:58,181 - INFO - Processed 95000000 reads so far
2011-05-20 03:52:06,627 - INFO - Processed 95100000 reads so far
2011-05-20 03:52:15,187 - INFO - Processed 95200000 reads so far
2011-05-20 03:52:23,117 - INFO - Processed 95300000 reads so far
2011-05-20 03:52:32,932 - INFO - Processed 95400000 reads so far
2011-05-20 03:52:43,149 - INFO - Processed 95500000 reads so far
2011-05-20 03:52:53,390 - INFO - Processed 95600000 reads so far
2011-05-20 03:53:03,609 - INFO - Processed 95700000 reads so far
2011-05-20 03:53:13,802 - INFO - Processed 95800000 reads so far
2011-05-20 03:53:15,592 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:142990179-163010179
2011-05-20 03:53:23,329 - INFO - Processed 95900000 reads so far
2011-05-20 03:53:34,756 - INFO - Processed 96000000 reads so far
2011-05-20 03:53:46,725 - INFO - Processed 96100000 reads so far
2011-05-20 03:53:56,594 - INFO - Processed 96200000 reads so far
2011-05-20 03:54:05,275 - INFO - Processed 96300000 reads so far
2011-05-20 03:54:15,068 - INFO - Processed 96400000 reads so far
2011-05-20 03:54:25,460 - INFO - Processed 96500000 reads so far
2011-05-20 03:54:34,923 - INFO - Processed 96600000 reads so far
2011-05-20 03:54:46,786 - INFO - Processed 96700000 reads so far
2011-05-20 03:54:57,913 - INFO - Processed 96800000 reads so far
2011-05-20 03:55:10,172 - INFO - Processed 96900000 reads so far
2011-05-20 03:55:21,486 - INFO - Processed 97000000 reads so far
2011-05-20 03:55:28,026 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:162990190-183010190
2011-05-20 03:55:32,542 - INFO - Processed 97100000 reads so far
2011-05-20 03:55:42,557 - INFO - Processed 97200000 reads so far
2011-05-20 03:55:53,964 - INFO - Processed 97300000 reads so far
2011-05-20 03:56:06,996 - INFO - Processed 97400000 reads so far
2011-05-20 03:56:16,153 - INFO - Processed 97500000 reads so far
2011-05-20 03:56:26,789 - INFO - Processed 97600000 reads so far
2011-05-20 03:56:36,627 - INFO - Processed 97700000 reads so far
2011-05-20 03:56:45,554 - INFO - Processed 97800000 reads so far
2011-05-20 03:56:54,064 - INFO - Processed 97900000 reads so far
2011-05-20 03:57:03,253 - INFO - Processed 98000000 reads so far
2011-05-20 03:57:12,793 - INFO - Processed 98100000 reads so far
2011-05-20 03:57:21,335 - INFO - Processed 98200000 reads so far
2011-05-20 03:57:25,022 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:2990000-23010000
2011-05-20 03:57:30,564 - INFO - Processed 98300000 reads so far
2011-05-20 03:57:39,752 - INFO - Processed 98400000 reads so far
2011-05-20 03:57:49,373 - INFO - Processed 98500000 reads so far
2011-05-20 03:57:58,767 - INFO - Processed 98600000 reads so far
2011-05-20 03:58:09,265 - INFO - Processed 98700000 reads so far
2011-05-20 03:58:20,388 - INFO - Processed 98800000 reads so far
2011-05-20 03:58:29,268 - INFO - Processed 98900000 reads so far
2011-05-20 03:58:55,077 - INFO - Processed 99000000 reads so far
2011-05-20 03:59:03,563 - INFO - Processed 99100000 reads so far
2011-05-20 03:59:12,226 - INFO - Processed 99200000 reads so far
2011-05-20 03:59:21,089 - INFO - Processed 99300000 reads so far
2011-05-20 03:59:28,503 - INFO - Processed 99400000 reads so far
2011-05-20 03:59:38,110 - INFO - Processed 99500000 reads so far
2011-05-20 03:59:38,444 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:22990006-43010006
2011-05-20 03:59:47,119 - INFO - Processed 99600000 reads so far
2011-05-20 03:59:59,625 - INFO - Processed 99700000 reads so far
2011-05-20 04:00:08,423 - INFO - Processed 99800000 reads so far
2011-05-20 04:00:16,846 - INFO - Processed 99900000 reads so far
2011-05-20 04:00:27,059 - INFO - Processed 100000000 reads so far
2011-05-20 04:00:40,271 - INFO - Processed 100100000 reads so far
2011-05-20 04:00:53,413 - INFO - Processed 100200000 reads so far
2011-05-20 04:01:06,067 - INFO - Processed 100300000 reads so far
2011-05-20 04:01:18,020 - INFO - Processed 100400000 reads so far
2011-05-20 04:01:32,921 - INFO - Processed 100500000 reads so far
2011-05-20 04:01:46,354 - INFO - Processed 100600000 reads so far
2011-05-20 04:01:58,090 - INFO - Processed 100700000 reads so far
2011-05-20 04:02:05,651 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:42990022-63010022
2011-05-20 04:02:09,797 - INFO - Processed 100800000 reads so far
2011-05-20 04:02:20,710 - INFO - Processed 100900000 reads so far
2011-05-20 04:02:30,822 - INFO - Processed 101000000 reads so far
2011-05-20 04:02:41,012 - INFO - Processed 101100000 reads so far
2011-05-20 04:02:53,680 - INFO - Processed 101200000 reads so far
2011-05-20 04:03:05,263 - INFO - Processed 101300000 reads so far
2011-05-20 04:03:15,291 - INFO - Processed 101400000 reads so far
2011-05-20 04:03:24,524 - INFO - Processed 101500000 reads so far
2011-05-20 04:03:33,557 - INFO - Processed 101600000 reads so far
2011-05-20 04:03:42,032 - INFO - Processed 101700000 reads so far
2011-05-20 04:03:50,635 - INFO - Processed 101800000 reads so far
2011-05-20 04:04:00,560 - INFO - Processed 101900000 reads so far
2011-05-20 04:04:08,660 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:62990026-83010026
2011-05-20 04:04:09,477 - INFO - Processed 102000000 reads so far
2011-05-20 04:04:18,248 - INFO - Processed 102100000 reads so far
2011-05-20 04:04:27,846 - INFO - Processed 102200000 reads so far
2011-05-20 04:04:38,022 - INFO - Processed 102300000 reads so far
2011-05-20 04:04:50,235 - INFO - Processed 102400000 reads so far
2011-05-20 04:04:58,506 - INFO - Processed 102500000 reads so far
2011-05-20 04:05:10,174 - INFO - Processed 102600000 reads so far
2011-05-20 04:05:20,512 - INFO - Processed 102700000 reads so far
2011-05-20 04:05:30,716 - INFO - Processed 102800000 reads so far
2011-05-20 04:05:39,892 - INFO - Processed 102900000 reads so far
2011-05-20 04:05:50,278 - INFO - Processed 103000000 reads so far
2011-05-20 04:06:00,947 - INFO - Processed 103100000 reads so far
2011-05-20 04:06:10,946 - INFO - Processed 103200000 reads so far
2011-05-20 04:06:13,663 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:82990033-103010033
2011-05-20 04:06:20,847 - INFO - Processed 103300000 reads so far
2011-05-20 04:06:30,075 - INFO - Processed 103400000 reads so far
2011-05-20 04:06:40,457 - INFO - Processed 103500000 reads so far
2011-05-20 04:06:51,336 - INFO - Processed 103600000 reads so far
2011-05-20 04:07:01,707 - INFO - Processed 103700000 reads so far
2011-05-20 04:07:11,766 - INFO - Processed 103800000 reads so far
2011-05-20 04:07:21,682 - INFO - Processed 103900000 reads so far
2011-05-20 04:07:31,924 - INFO - Processed 104000000 reads so far
2011-05-20 04:07:42,222 - INFO - Processed 104100000 reads so far
2011-05-20 04:07:52,138 - INFO - Processed 104200000 reads so far
2011-05-20 04:08:02,588 - INFO - Processed 104300000 reads so far
2011-05-20 04:08:12,768 - INFO - Processed 104400000 reads so far
2011-05-20 04:08:18,873 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:102990056-123010056
2011-05-20 04:08:22,421 - INFO - Processed 104500000 reads so far
2011-05-20 04:08:33,451 - INFO - Processed 104600000 reads so far
2011-05-20 04:08:46,506 - INFO - Processed 104700000 reads so far
2011-05-20 04:08:57,859 - INFO - Processed 104800000 reads so far
2011-05-20 04:09:07,909 - INFO - Processed 104900000 reads so far
2011-05-20 04:09:18,840 - INFO - Processed 105000000 reads so far
2011-05-20 04:09:30,686 - INFO - Processed 105100000 reads so far
2011-05-20 04:09:39,432 - INFO - Processed 105200000 reads so far
2011-05-20 04:09:49,352 - INFO - Processed 105300000 reads so far
2011-05-20 04:09:57,321 - INFO - Processed 105400000 reads so far
2011-05-20 04:10:04,401 - INFO - Processed 105500000 reads so far
2011-05-20 04:10:12,573 - INFO - Processed 105600000 reads so far
2011-05-20 04:10:20,458 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:122990085-143010085
2011-05-20 04:10:20,961 - INFO - Processed 105700000 reads so far
2011-05-20 04:10:32,176 - INFO - Processed 105800000 reads so far
2011-05-20 04:10:40,692 - INFO - Processed 105900000 reads so far
2011-05-20 04:10:48,049 - INFO - Processed 106000000 reads so far
2011-05-20 04:10:56,818 - INFO - Processed 106100000 reads so far
2011-05-20 04:11:06,919 - INFO - Processed 106200000 reads so far
2011-05-20 04:11:13,951 - INFO - Processed 106300000 reads so far
2011-05-20 04:11:23,404 - INFO - Processed 106400000 reads so far
2011-05-20 04:11:31,778 - INFO - Processed 106500000 reads so far
2011-05-20 04:11:39,784 - INFO - Processed 106600000 reads so far
2011-05-20 04:11:50,283 - INFO - Processed 106700000 reads so far
2011-05-20 04:11:58,307 - INFO - Processed 106800000 reads so far
2011-05-20 04:12:06,812 - INFO - Processed 106900000 reads so far
2011-05-20 04:12:10,868 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:142990103-163010103
2011-05-20 04:12:16,805 - INFO - Processed 107000000 reads so far
2011-05-20 04:12:28,772 - INFO - Processed 107100000 reads so far
2011-05-20 04:12:39,495 - INFO - Processed 107200000 reads so far
2011-05-20 04:12:51,829 - INFO - Processed 107300000 reads so far
2011-05-20 04:13:03,538 - INFO - Processed 107400000 reads so far
2011-05-20 04:13:14,146 - INFO - Processed 107500000 reads so far
2011-05-20 04:13:24,977 - INFO - Processed 107600000 reads so far
2011-05-20 04:13:35,974 - INFO - Processed 107700000 reads so far
2011-05-20 04:13:46,646 - INFO - Processed 107800000 reads so far
2011-05-20 04:13:57,598 - INFO - Processed 107900000 reads so far
2011-05-20 04:14:11,017 - INFO - Processed 108000000 reads so far
2011-05-20 04:14:12,344 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3_random:0-20010011
2011-05-20 04:14:12,488 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:2989992-23009992
2011-05-20 04:14:22,178 - INFO - Processed 108100000 reads so far
2011-05-20 04:14:33,348 - INFO - Processed 108200000 reads so far
2011-05-20 04:14:44,063 - INFO - Processed 108300000 reads so far
2011-05-20 04:14:55,086 - INFO - Processed 108400000 reads so far
2011-05-20 04:15:05,530 - INFO - Processed 108500000 reads so far
2011-05-20 04:15:16,895 - INFO - Processed 108600000 reads so far
2011-05-20 04:15:27,691 - INFO - Processed 108700000 reads so far
2011-05-20 04:15:38,493 - INFO - Processed 108800000 reads so far
2011-05-20 04:15:50,276 - INFO - Processed 108900000 reads so far
2011-05-20 04:15:58,495 - INFO - Processed 109000000 reads so far
2011-05-20 04:16:08,028 - INFO - Processed 109100000 reads so far
2011-05-20 04:16:17,623 - INFO - Processed 109200000 reads so far
2011-05-20 04:16:31,231 - INFO - Processed 109300000 reads so far
2011-05-20 04:16:31,235 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:22989998-43009998
2011-05-20 04:16:45,095 - INFO - Processed 109400000 reads so far
2011-05-20 04:16:57,881 - INFO - Processed 109500000 reads so far
2011-05-20 04:17:07,934 - INFO - Processed 109600000 reads so far
2011-05-20 04:17:19,046 - INFO - Processed 109700000 reads so far
2011-05-20 04:17:30,453 - INFO - Processed 109800000 reads so far
2011-05-20 04:17:38,738 - INFO - Processed 109900000 reads so far
2011-05-20 04:17:49,787 - INFO - Processed 110000000 reads so far
2011-05-20 04:17:59,949 - INFO - Processed 110100000 reads so far
2011-05-20 04:18:11,591 - INFO - Processed 110200000 reads so far
2011-05-20 04:18:22,040 - INFO - Processed 110300000 reads so far
2011-05-20 04:18:30,179 - INFO - Processed 110400000 reads so far
2011-05-20 04:18:40,309 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:42990014-63010014
2011-05-20 04:18:40,811 - INFO - Processed 110500000 reads so far
2011-05-20 04:18:51,853 - INFO - Processed 110600000 reads so far
2011-05-20 04:19:03,007 - INFO - Processed 110700000 reads so far
2011-05-20 04:19:11,787 - INFO - Processed 110800000 reads so far
2011-05-20 04:19:22,387 - INFO - Processed 110900000 reads so far
2011-05-20 04:19:34,767 - INFO - Processed 111000000 reads so far
2011-05-20 04:19:44,065 - INFO - Processed 111100000 reads so far
2011-05-20 04:19:54,994 - INFO - Processed 111200000 reads so far
2011-05-20 04:20:06,575 - INFO - Processed 111300000 reads so far
2011-05-20 04:20:20,625 - INFO - Processed 111400000 reads so far
2011-05-20 04:20:34,069 - INFO - Processed 111500000 reads so far
2011-05-20 04:20:44,943 - INFO - Processed 111600000 reads so far
2011-05-20 04:20:57,918 - INFO - Processed 111700000 reads so far
2011-05-20 04:21:01,667 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:62990022-83010022
2011-05-20 04:21:09,323 - INFO - Processed 111800000 reads so far
2011-05-20 04:21:20,818 - INFO - Processed 111900000 reads so far
2011-05-20 04:21:32,595 - INFO - Processed 112000000 reads so far
2011-05-20 04:21:44,004 - INFO - Processed 112100000 reads so far
2011-05-20 04:21:55,278 - INFO - Processed 112200000 reads so far
2011-05-20 04:22:06,584 - INFO - Processed 112300000 reads so far
2011-05-20 04:22:17,514 - INFO - Processed 112400000 reads so far
2011-05-20 04:22:29,405 - INFO - Processed 112500000 reads so far
2011-05-20 04:22:40,458 - INFO - Processed 112600000 reads so far
2011-05-20 04:22:47,205 - INFO - Processed 112700000 reads so far
2011-05-20 04:22:58,249 - INFO - Processed 112800000 reads so far
2011-05-20 04:23:10,079 - INFO - Processed 112900000 reads so far
2011-05-20 04:23:21,280 - INFO - Processed 113000000 reads so far
2011-05-20 04:23:21,526 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:82990044-103010044
2011-05-20 04:23:32,427 - INFO - Processed 113100000 reads so far
2011-05-20 04:23:45,419 - INFO - Processed 113200000 reads so far
2011-05-20 04:23:56,439 - INFO - Processed 113300000 reads so far
2011-05-20 04:24:07,383 - INFO - Processed 113400000 reads so far
2011-05-20 04:24:20,066 - INFO - Processed 113500000 reads so far
2011-05-20 04:24:31,213 - INFO - Processed 113600000 reads so far
2011-05-20 04:24:42,242 - INFO - Processed 113700000 reads so far
2011-05-20 04:24:55,258 - INFO - Processed 113800000 reads so far
2011-05-20 04:25:06,736 - INFO - Processed 113900000 reads so far
2011-05-20 04:25:18,214 - INFO - Processed 114000000 reads so far
2011-05-20 04:25:30,067 - INFO - Processed 114100000 reads so far
2011-05-20 04:25:42,439 - INFO - Processed 114200000 reads so far
2011-05-20 04:25:53,300 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:102990078-123010078
2011-05-20 04:25:56,225 - INFO - Processed 114300000 reads so far
2011-05-20 04:26:07,617 - INFO - Processed 114400000 reads so far
2011-05-20 04:26:19,118 - INFO - Processed 114500000 reads so far
2011-05-20 04:26:32,233 - INFO - Processed 114600000 reads so far
2011-05-20 04:26:43,398 - INFO - Processed 114700000 reads so far
2011-05-20 04:26:54,363 - INFO - Processed 114800000 reads so far
2011-05-20 04:27:07,973 - INFO - Processed 114900000 reads so far
2011-05-20 04:27:19,301 - INFO - Processed 115000000 reads so far
2011-05-20 04:27:31,045 - INFO - Processed 115100000 reads so far
2011-05-20 04:27:43,981 - INFO - Processed 115200000 reads so far
2011-05-20 04:27:55,869 - INFO - Processed 115300000 reads so far
2011-05-20 04:28:05,641 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:122990275-143010275
2011-05-20 04:28:07,283 - INFO - Processed 115400000 reads so far
2011-05-20 04:28:19,245 - INFO - Processed 115500000 reads so far
2011-05-20 04:28:31,055 - INFO - Processed 115600000 reads so far
2011-05-20 04:28:44,961 - INFO - Processed 115700000 reads so far
2011-05-20 04:28:56,701 - INFO - Processed 115800000 reads so far
2011-05-20 04:29:09,069 - INFO - Processed 115900000 reads so far
2011-05-20 04:29:21,382 - INFO - Processed 116000000 reads so far
2011-05-20 04:29:32,796 - INFO - Processed 116100000 reads so far
2011-05-20 04:29:44,678 - INFO - Processed 116200000 reads so far
2011-05-20 04:29:56,224 - INFO - Processed 116300000 reads so far
2011-05-20 04:30:07,740 - INFO - Processed 116400000 reads so far
2011-05-20 04:30:18,921 - INFO - Processed 116500000 reads so far
2011-05-20 04:30:19,156 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:142990276-163010276
2011-05-20 04:30:32,607 - INFO - Processed 116600000 reads so far
2011-05-20 04:30:49,581 - INFO - Processed 116700000 reads so far
2011-05-20 04:30:59,969 - INFO - Processed 116800000 reads so far
2011-05-20 04:31:11,316 - INFO - Processed 116900000 reads so far
2011-05-20 04:31:22,837 - INFO - Processed 117000000 reads so far
2011-05-20 04:31:34,339 - INFO - Processed 117100000 reads so far
2011-05-20 04:31:47,041 - INFO - Processed 117200000 reads so far
2011-05-20 04:31:59,306 - INFO - Processed 117300000 reads so far
2011-05-20 04:32:03,160 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4_random:0-20010003
2011-05-20 04:32:04,085 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:2990011-23010011
2011-05-20 04:32:12,500 - INFO - Processed 117400000 reads so far
2011-05-20 04:32:23,576 - INFO - Processed 117500000 reads so far
2011-05-20 04:32:34,622 - INFO - Processed 117600000 reads so far
2011-05-20 04:32:45,633 - INFO - Processed 117700000 reads so far
2011-05-20 04:32:59,412 - INFO - Processed 117800000 reads so far
2011-05-20 04:33:11,063 - INFO - Processed 117900000 reads so far
2011-05-20 04:33:23,239 - INFO - Processed 118000000 reads so far
2011-05-20 04:33:35,267 - INFO - Processed 118100000 reads so far
2011-05-20 04:33:47,801 - INFO - Processed 118200000 reads so far
2011-05-20 04:33:58,840 - INFO - Processed 118300000 reads so far
2011-05-20 04:34:10,506 - INFO - Processed 118400000 reads so far
2011-05-20 04:34:22,640 - INFO - Processed 118500000 reads so far
2011-05-20 04:34:35,761 - INFO - Processed 118600000 reads so far
2011-05-20 04:34:38,147 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:22990032-43010032
2011-05-20 04:34:47,104 - INFO - Processed 118700000 reads so far
2011-05-20 04:34:57,840 - INFO - Processed 118800000 reads so far
2011-05-20 04:35:08,786 - INFO - Processed 118900000 reads so far
2011-05-20 04:35:20,155 - INFO - Processed 119000000 reads so far
2011-05-20 04:35:32,561 - INFO - Processed 119100000 reads so far
2011-05-20 04:35:44,218 - INFO - Processed 119200000 reads so far
2011-05-20 04:35:57,228 - INFO - Processed 119300000 reads so far
2011-05-20 04:36:08,651 - INFO - Processed 119400000 reads so far
2011-05-20 04:36:20,094 - INFO - Processed 119500000 reads so far
2011-05-20 04:36:31,625 - INFO - Processed 119600000 reads so far
2011-05-20 04:36:42,902 - INFO - Processed 119700000 reads so far
2011-05-20 04:36:54,000 - INFO - Processed 119800000 reads so far
2011-05-20 04:36:58,682 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:42990041-63010041
2011-05-20 04:37:14,808 - INFO - Processed 119900000 reads so far
2011-05-20 04:37:26,455 - INFO - Processed 120000000 reads so far
2011-05-20 04:37:37,440 - INFO - Processed 120100000 reads so far
2011-05-20 04:37:50,593 - INFO - Processed 120200000 reads so far
2011-05-20 04:38:01,458 - INFO - Processed 120300000 reads so far
2011-05-20 04:38:12,306 - INFO - Processed 120400000 reads so far
2011-05-20 04:38:25,354 - INFO - Processed 120500000 reads so far
2011-05-20 04:38:37,948 - INFO - Processed 120600000 reads so far
2011-05-20 04:38:49,088 - INFO - Processed 120700000 reads so far
2011-05-20 04:38:59,836 - INFO - Processed 120800000 reads so far
2011-05-20 04:39:10,270 - INFO - Processed 120900000 reads so far
2011-05-20 04:39:21,711 - INFO - Processed 121000000 reads so far
2011-05-20 04:39:27,142 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:62990044-83010044
2011-05-20 04:39:32,754 - INFO - Processed 121100000 reads so far
2011-05-20 04:39:43,947 - INFO - Processed 121200000 reads so far
2011-05-20 04:39:55,113 - INFO - Processed 121300000 reads so far
2011-05-20 04:40:05,305 - INFO - Processed 121400000 reads so far
2011-05-20 04:40:16,676 - INFO - Processed 121500000 reads so far
2011-05-20 04:40:27,666 - INFO - Processed 121600000 reads so far
2011-05-20 04:40:39,078 - INFO - Processed 121700000 reads so far
2011-05-20 04:40:47,517 - INFO - Processed 121800000 reads so far
2011-05-20 04:40:58,013 - INFO - Processed 121900000 reads so far
2011-05-20 04:41:07,397 - INFO - Processed 122000000 reads so far
2011-05-20 04:41:16,984 - INFO - Processed 122100000 reads so far
2011-05-20 04:41:26,169 - INFO - Processed 122200000 reads so far
2011-05-20 04:41:34,689 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:82990110-103010110
2011-05-20 04:41:37,373 - INFO - Processed 122300000 reads so far
2011-05-20 04:41:50,666 - INFO - Processed 122400000 reads so far
2011-05-20 04:42:01,998 - INFO - Processed 122500000 reads so far
2011-05-20 04:42:11,771 - INFO - Processed 122600000 reads so far
2011-05-20 04:42:23,110 - INFO - Processed 122700000 reads so far
2011-05-20 04:42:34,218 - INFO - Processed 122800000 reads so far
2011-05-20 04:42:46,624 - INFO - Processed 122900000 reads so far
2011-05-20 04:42:57,715 - INFO - Processed 123000000 reads so far
2011-05-20 04:43:09,354 - INFO - Processed 123100000 reads so far
2011-05-20 04:43:19,502 - INFO - Processed 123200000 reads so far
2011-05-20 04:43:28,532 - INFO - Processed 123300000 reads so far
2011-05-20 04:43:39,428 - INFO - Processed 123400000 reads so far
2011-05-20 04:43:45,476 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:102990140-123010140
2011-05-20 04:43:50,541 - INFO - Processed 123500000 reads so far
2011-05-20 04:44:01,721 - INFO - Processed 123600000 reads so far
2011-05-20 04:44:14,506 - INFO - Processed 123700000 reads so far
2011-05-20 04:44:25,279 - INFO - Processed 123800000 reads so far
2011-05-20 04:44:33,620 - INFO - Processed 123900000 reads so far
2011-05-20 04:44:41,766 - INFO - Processed 124000000 reads so far
2011-05-20 04:44:52,977 - INFO - Processed 124100000 reads so far
2011-05-20 04:45:04,742 - INFO - Processed 124200000 reads so far
2011-05-20 04:45:16,388 - INFO - Processed 124300000 reads so far
2011-05-20 04:45:27,642 - INFO - Processed 124400000 reads so far
2011-05-20 04:45:40,055 - INFO - Processed 124500000 reads so far
2011-05-20 04:45:53,170 - INFO - Processed 124600000 reads so far
2011-05-20 04:45:57,040 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:122990148-143010148
2011-05-20 04:46:04,864 - INFO - Processed 124700000 reads so far
2011-05-20 04:46:16,586 - INFO - Processed 124800000 reads so far
2011-05-20 04:46:32,683 - INFO - Processed 124900000 reads so far
2011-05-20 04:46:44,412 - INFO - Processed 125000000 reads so far
2011-05-20 04:46:55,641 - INFO - Processed 125100000 reads so far
2011-05-20 04:47:07,738 - INFO - Processed 125200000 reads so far
2011-05-20 04:47:19,351 - INFO - Processed 125300000 reads so far
2011-05-20 04:47:32,456 - INFO - Processed 125400000 reads so far
2011-05-20 04:47:46,603 - INFO - Processed 125500000 reads so far
2011-05-20 04:47:57,901 - INFO - Processed 125600000 reads so far
2011-05-20 04:48:09,850 - INFO - Processed 125700000 reads so far
2011-05-20 04:48:20,992 - INFO - Processed 125800000 reads so far
2011-05-20 04:48:22,141 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:142990152-163010152
2011-05-20 04:48:32,884 - INFO - Processed 125900000 reads so far
2011-05-20 04:48:44,410 - INFO - Processed 126000000 reads so far
2011-05-20 04:48:56,537 - INFO - Processed 126100000 reads so far
2011-05-20 04:49:08,428 - INFO - Processed 126200000 reads so far
2011-05-20 04:49:19,614 - INFO - Processed 126300000 reads so far
2011-05-20 04:49:28,284 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5_random:0-20010002
2011-05-20 04:49:28,830 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:2989987-23009987
2011-05-20 04:49:30,699 - INFO - Processed 126400000 reads so far
2011-05-20 04:49:41,855 - INFO - Processed 126500000 reads so far
2011-05-20 04:49:53,089 - INFO - Processed 126600000 reads so far
2011-05-20 04:50:06,224 - INFO - Processed 126700000 reads so far
2011-05-20 04:50:17,738 - INFO - Processed 126800000 reads so far
2011-05-20 04:50:28,738 - INFO - Processed 126900000 reads so far
2011-05-20 04:50:40,645 - INFO - Processed 127000000 reads so far
2011-05-20 04:50:51,723 - INFO - Processed 127100000 reads so far
2011-05-20 04:51:02,858 - INFO - Processed 127200000 reads so far
2011-05-20 04:51:15,575 - INFO - Processed 127300000 reads so far
2011-05-20 04:51:26,720 - INFO - Processed 127400000 reads so far
2011-05-20 04:51:37,764 - INFO - Processed 127500000 reads so far
2011-05-20 04:51:48,610 - INFO - Processed 127600000 reads so far
2011-05-20 04:51:51,187 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:22990025-43010025
2011-05-20 04:51:57,755 - INFO - Processed 127700000 reads so far
2011-05-20 04:52:06,985 - INFO - Processed 127800000 reads so far
2011-05-20 04:52:17,447 - INFO - Processed 127900000 reads so far
2011-05-20 04:52:28,942 - INFO - Processed 128000000 reads so far
2011-05-20 04:52:39,838 - INFO - Processed 128100000 reads so far
2011-05-20 04:52:47,835 - INFO - Processed 128200000 reads so far
2011-05-20 04:52:59,387 - INFO - Processed 128300000 reads so far
2011-05-20 04:53:10,857 - INFO - Processed 128400000 reads so far
2011-05-20 04:53:19,277 - INFO - Processed 128500000 reads so far
2011-05-20 04:53:28,497 - INFO - Processed 128600000 reads so far
2011-05-20 04:53:38,794 - INFO - Processed 128700000 reads so far
2011-05-20 04:53:48,259 - INFO - Processed 128800000 reads so far
2011-05-20 04:53:56,647 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:42990034-63010034
2011-05-20 04:53:58,479 - INFO - Processed 128900000 reads so far
2011-05-20 04:54:08,781 - INFO - Processed 129000000 reads so far
2011-05-20 04:54:18,627 - INFO - Processed 129100000 reads so far
2011-05-20 04:54:28,875 - INFO - Processed 129200000 reads so far
2011-05-20 04:54:39,985 - INFO - Processed 129300000 reads so far
2011-05-20 04:54:49,877 - INFO - Processed 129400000 reads so far
2011-05-20 04:54:59,172 - INFO - Processed 129500000 reads so far
2011-05-20 04:55:08,430 - INFO - Processed 129600000 reads so far
2011-05-20 04:55:18,201 - INFO - Processed 129700000 reads so far
2011-05-20 04:55:27,576 - INFO - Processed 129800000 reads so far
2011-05-20 04:55:36,273 - INFO - Processed 129900000 reads so far
2011-05-20 04:55:44,473 - INFO - Processed 130000000 reads so far
2011-05-20 04:55:53,176 - INFO - Processed 130100000 reads so far
2011-05-20 04:55:58,429 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:62990058-83010058
2011-05-20 04:56:03,862 - INFO - Processed 130200000 reads so far
2011-05-20 04:56:13,969 - INFO - Processed 130300000 reads so far
2011-05-20 04:56:23,613 - INFO - Processed 130400000 reads so far
2011-05-20 04:56:30,305 - INFO - Processed 130500000 reads so far
2011-05-20 04:56:37,064 - INFO - Processed 130600000 reads so far
2011-05-20 04:56:44,952 - INFO - Processed 130700000 reads so far
2011-05-20 04:56:55,901 - INFO - Processed 130800000 reads so far
2011-05-20 04:57:06,786 - INFO - Processed 130900000 reads so far
2011-05-20 04:57:18,362 - INFO - Processed 131000000 reads so far
2011-05-20 04:57:28,487 - INFO - Processed 131100000 reads so far
2011-05-20 04:57:40,145 - INFO - Processed 131200000 reads so far
2011-05-20 04:57:52,562 - INFO - Processed 131300000 reads so far
2011-05-20 04:58:00,694 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:82990076-103010076
2011-05-20 04:58:04,730 - INFO - Processed 131400000 reads so far
2011-05-20 04:58:17,529 - INFO - Processed 131500000 reads so far
2011-05-20 04:58:31,225 - INFO - Processed 131600000 reads so far
2011-05-20 04:58:42,648 - INFO - Processed 131700000 reads so far
2011-05-20 04:58:53,702 - INFO - Processed 131800000 reads so far
2011-05-20 04:59:05,148 - INFO - Processed 131900000 reads so far
2011-05-20 04:59:16,684 - INFO - Processed 132000000 reads so far
2011-05-20 04:59:27,746 - INFO - Processed 132100000 reads so far
2011-05-20 04:59:39,478 - INFO - Processed 132200000 reads so far
2011-05-20 04:59:51,039 - INFO - Processed 132300000 reads so far
2011-05-20 05:00:02,165 - INFO - Processed 132400000 reads so far
2011-05-20 05:00:13,546 - INFO - Processed 132500000 reads so far
2011-05-20 05:00:24,514 - INFO - Processed 132600000 reads so far
2011-05-20 05:00:25,939 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:102990087-123010087
2011-05-20 05:00:35,204 - INFO - Processed 132700000 reads so far
2011-05-20 05:00:44,808 - INFO - Processed 132800000 reads so far
2011-05-20 05:00:54,181 - INFO - Processed 132900000 reads so far
2011-05-20 05:01:03,905 - INFO - Processed 133000000 reads so far
2011-05-20 05:01:13,615 - INFO - Processed 133100000 reads so far
2011-05-20 05:01:23,629 - INFO - Processed 133200000 reads so far
2011-05-20 05:01:36,891 - INFO - Processed 133300000 reads so far
2011-05-20 05:01:46,372 - INFO - Processed 133400000 reads so far
2011-05-20 05:01:57,307 - INFO - Processed 133500000 reads so far
2011-05-20 05:02:09,528 - INFO - Processed 133600000 reads so far
2011-05-20 05:02:21,580 - INFO - Processed 133700000 reads so far
2011-05-20 05:02:32,611 - INFO - Processed 133800000 reads so far
2011-05-20 05:02:44,554 - INFO - Processed 133900000 reads so far
2011-05-20 05:02:55,608 - INFO - Processed 134000000 reads so far
2011-05-20 05:03:07,858 - INFO - Processed 134100000 reads so far
2011-05-20 05:03:19,442 - INFO - Processed 134200000 reads so far
2011-05-20 05:03:30,410 - INFO - Processed 134300000 reads so far
2011-05-20 05:03:41,743 - INFO - Processed 134400000 reads so far
2011-05-20 05:03:51,196 - INFO - Processed 134500000 reads so far
2011-05-20 05:04:01,381 - INFO - Processed 134600000 reads so far
2011-05-20 05:04:11,835 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:122990133-143010133
2011-05-20 05:04:12,564 - INFO - Processed 134700000 reads so far
2011-05-20 05:04:20,791 - INFO - Processed 134800000 reads so far
2011-05-20 05:04:30,480 - INFO - Processed 134900000 reads so far
2011-05-20 05:04:42,328 - INFO - Processed 135000000 reads so far
2011-05-20 05:04:53,580 - INFO - Processed 135100000 reads so far
2011-05-20 05:05:03,618 - INFO - Processed 135200000 reads so far
2011-05-20 05:05:13,775 - INFO - Processed 135300000 reads so far
2011-05-20 05:05:24,071 - INFO - Processed 135400000 reads so far
2011-05-20 05:05:33,687 - INFO - Processed 135500000 reads so far
2011-05-20 05:05:44,061 - INFO - Processed 135600000 reads so far
2011-05-20 05:05:52,357 - INFO - Processed 135700000 reads so far
2011-05-20 05:06:00,704 - INFO - Processed 135800000 reads so far
2011-05-20 05:06:10,848 - INFO - Processed 135900000 reads so far
2011-05-20 05:06:13,666 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:142990212-163010212
2011-05-20 05:06:20,020 - INFO - Processed 136000000 reads so far
2011-05-20 05:06:30,365 - INFO - Processed 136100000 reads so far
2011-05-20 05:06:42,498 - INFO - Processed 136200000 reads so far
2011-05-20 05:06:51,607 - INFO - Processed 136300000 reads so far
2011-05-20 05:06:54,884 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:2990061-23010061
2011-05-20 05:07:00,767 - INFO - Processed 136400000 reads so far
2011-05-20 05:07:11,317 - INFO - Processed 136500000 reads so far
2011-05-20 05:07:21,521 - INFO - Processed 136600000 reads so far
2011-05-20 05:07:31,476 - INFO - Processed 136700000 reads so far
2011-05-20 05:07:42,025 - INFO - Processed 136800000 reads so far
2011-05-20 05:07:51,752 - INFO - Processed 136900000 reads so far
2011-05-20 05:08:01,171 - INFO - Processed 137000000 reads so far
2011-05-20 05:08:10,537 - INFO - Processed 137100000 reads so far
2011-05-20 05:08:21,098 - INFO - Processed 137200000 reads so far
2011-05-20 05:08:30,339 - INFO - Processed 137300000 reads so far
2011-05-20 05:08:40,266 - INFO - Processed 137400000 reads so far
2011-05-20 05:08:41,418 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:22990169-43010169
2011-05-20 05:08:51,655 - INFO - Processed 137500000 reads so far
2011-05-20 05:09:03,746 - INFO - Processed 137600000 reads so far
2011-05-20 05:09:15,993 - INFO - Processed 137700000 reads so far
2011-05-20 05:09:26,134 - INFO - Processed 137800000 reads so far
2011-05-20 05:09:35,886 - INFO - Processed 137900000 reads so far
2011-05-20 05:09:45,884 - INFO - Processed 138000000 reads so far
2011-05-20 05:09:57,088 - INFO - Processed 138100000 reads so far
2011-05-20 05:10:12,263 - INFO - Processed 138200000 reads so far
2011-05-20 05:10:23,648 - INFO - Processed 138300000 reads so far
2011-05-20 05:10:29,071 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:46346926-66366926
2011-05-20 05:10:35,082 - INFO - Processed 138400000 reads so far
2011-05-20 05:10:51,219 - INFO - Processed 138500000 reads so far
2011-05-20 05:11:03,261 - INFO - Processed 138600000 reads so far
2011-05-20 05:11:13,472 - INFO - Processed 138700000 reads so far
2011-05-20 05:11:27,649 - INFO - Processed 138800000 reads so far
2011-05-20 05:11:39,770 - INFO - Processed 138900000 reads so far
2011-05-20 05:11:48,979 - INFO - Processed 139000000 reads so far
2011-05-20 05:12:00,658 - INFO - Processed 139100000 reads so far
2011-05-20 05:12:12,451 - INFO - Processed 139200000 reads so far
2011-05-20 05:12:20,995 - INFO - Processed 139300000 reads so far
2011-05-20 05:12:30,578 - INFO - Processed 139400000 reads so far
2011-05-20 05:12:40,361 - INFO - Processed 139500000 reads so far
2011-05-20 05:12:47,090 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:66346968-86366968
2011-05-20 05:12:49,121 - INFO - Processed 139600000 reads so far
2011-05-20 05:12:56,901 - INFO - Processed 139700000 reads so far
2011-05-20 05:13:07,149 - INFO - Processed 139800000 reads so far
2011-05-20 05:13:17,325 - INFO - Processed 139900000 reads so far
2011-05-20 05:13:28,642 - INFO - Processed 140000000 reads so far
2011-05-20 05:13:39,766 - INFO - Processed 140100000 reads so far
2011-05-20 05:13:50,787 - INFO - Processed 140200000 reads so far
2011-05-20 05:14:01,636 - INFO - Processed 140300000 reads so far
2011-05-20 05:14:10,613 - INFO - Processed 140400000 reads so far
2011-05-20 05:14:20,160 - INFO - Processed 140500000 reads so far
2011-05-20 05:14:28,798 - INFO - Processed 140600000 reads so far
2011-05-20 05:14:39,577 - INFO - Processed 140700000 reads so far
2011-05-20 05:14:49,515 - INFO - Processed 140800000 reads so far
2011-05-20 05:14:55,261 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:86346983-106366983
2011-05-20 05:14:59,216 - INFO - Processed 140900000 reads so far
2011-05-20 05:15:09,458 - INFO - Processed 141000000 reads so far
2011-05-20 05:15:19,009 - INFO - Processed 141100000 reads so far
2011-05-20 05:15:27,607 - INFO - Processed 141200000 reads so far
2011-05-20 05:15:37,133 - INFO - Processed 141300000 reads so far
2011-05-20 05:15:47,109 - INFO - Processed 141400000 reads so far
2011-05-20 05:15:57,166 - INFO - Processed 141500000 reads so far
2011-05-20 05:16:07,587 - INFO - Processed 141600000 reads so far
2011-05-20 05:16:20,008 - INFO - Processed 141700000 reads so far
2011-05-20 05:16:31,768 - INFO - Processed 141800000 reads so far
2011-05-20 05:16:43,582 - INFO - Processed 141900000 reads so far
2011-05-20 05:16:54,717 - INFO - Processed 142000000 reads so far
2011-05-20 05:17:06,573 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:106347002-126367002
2011-05-20 05:17:07,392 - INFO - Processed 142100000 reads so far
2011-05-20 05:17:17,320 - INFO - Processed 142200000 reads so far
2011-05-20 05:17:26,425 - INFO - Processed 142300000 reads so far
2011-05-20 05:17:36,526 - INFO - Processed 142400000 reads so far
2011-05-20 05:17:46,965 - INFO - Processed 142500000 reads so far
2011-05-20 05:17:56,270 - INFO - Processed 142600000 reads so far
2011-05-20 05:18:06,268 - INFO - Processed 142700000 reads so far
2011-05-20 05:18:17,504 - INFO - Processed 142800000 reads so far
2011-05-20 05:18:27,571 - INFO - Processed 142900000 reads so far
2011-05-20 05:18:37,185 - INFO - Processed 143000000 reads so far
2011-05-20 05:18:46,921 - INFO - Processed 143100000 reads so far
2011-05-20 05:18:55,716 - INFO - Processed 143200000 reads so far
2011-05-20 05:19:06,441 - INFO - Processed 143300000 reads so far
2011-05-20 05:19:08,961 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:126347006-146367006
2011-05-20 05:19:15,133 - INFO - Processed 143400000 reads so far
2011-05-20 05:19:24,223 - INFO - Processed 143500000 reads so far
2011-05-20 05:19:32,825 - INFO - Processed 143600000 reads so far
2011-05-20 05:19:40,672 - INFO - Processed 143700000 reads so far
2011-05-20 05:19:51,009 - INFO - Processed 143800000 reads so far
2011-05-20 05:20:00,408 - INFO - Processed 143900000 reads so far
2011-05-20 05:20:09,283 - INFO - Processed 144000000 reads so far
2011-05-20 05:20:20,514 - INFO - Processed 144100000 reads so far
2011-05-20 05:20:31,058 - INFO - Processed 144200000 reads so far
2011-05-20 05:20:40,919 - INFO - Processed 144300000 reads so far
2011-05-20 05:20:52,001 - INFO - Processed 144400000 reads so far
2011-05-20 05:21:03,019 - INFO - Processed 144500000 reads so far
2011-05-20 05:21:09,594 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:146347025-166367025
2011-05-20 05:21:11,735 - INFO - Processed 144600000 reads so far
2011-05-20 05:21:21,197 - INFO - Processed 144700000 reads so far
2011-05-20 05:21:32,075 - INFO - Processed 144800000 reads so far
2011-05-20 05:21:41,725 - INFO - Processed 144900000 reads so far
2011-05-20 05:21:45,416 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7_random:0-20010225
2011-05-20 05:21:46,768 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:2990027-23010027
2011-05-20 05:21:52,599 - INFO - Processed 145000000 reads so far
2011-05-20 05:22:02,337 - INFO - Processed 145100000 reads so far
2011-05-20 05:22:10,993 - INFO - Processed 145200000 reads so far
2011-05-20 05:22:19,970 - INFO - Processed 145300000 reads so far
2011-05-20 05:22:29,497 - INFO - Processed 145400000 reads so far
2011-05-20 05:22:40,554 - INFO - Processed 145500000 reads so far
2011-05-20 05:22:49,844 - INFO - Processed 145600000 reads so far
2011-05-20 05:22:59,684 - INFO - Processed 145700000 reads so far
2011-05-20 05:23:10,857 - INFO - Processed 145800000 reads so far
2011-05-20 05:23:22,507 - INFO - Processed 145900000 reads so far
2011-05-20 05:23:32,694 - INFO - Processed 146000000 reads so far
2011-05-20 05:23:42,174 - INFO - Processed 146100000 reads so far
2011-05-20 05:23:50,019 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:22990131-43010131
2011-05-20 05:23:50,509 - INFO - Processed 146200000 reads so far
2011-05-20 05:24:00,251 - INFO - Processed 146300000 reads so far
2011-05-20 05:24:11,523 - INFO - Processed 146400000 reads so far
2011-05-20 05:24:24,235 - INFO - Processed 146500000 reads so far
2011-05-20 05:24:34,227 - INFO - Processed 146600000 reads so far
2011-05-20 05:24:43,996 - INFO - Processed 146700000 reads so far
2011-05-20 05:24:54,069 - INFO - Processed 146800000 reads so far
2011-05-20 05:25:03,203 - INFO - Processed 146900000 reads so far
2011-05-20 05:25:14,779 - INFO - Processed 147000000 reads so far
2011-05-20 05:25:23,877 - INFO - Processed 147100000 reads so far
2011-05-20 05:25:32,368 - INFO - Processed 147200000 reads so far
2011-05-20 05:25:43,281 - INFO - Processed 147300000 reads so far
2011-05-20 05:25:53,483 - INFO - Processed 147400000 reads so far
2011-05-20 05:25:56,148 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:42990210-63010210
2011-05-20 05:26:03,077 - INFO - Processed 147500000 reads so far
2011-05-20 05:26:11,246 - INFO - Processed 147600000 reads so far
2011-05-20 05:26:20,850 - INFO - Processed 147700000 reads so far
2011-05-20 05:26:31,390 - INFO - Processed 147800000 reads so far
2011-05-20 05:26:40,888 - INFO - Processed 147900000 reads so far
2011-05-20 05:26:50,428 - INFO - Processed 148000000 reads so far
2011-05-20 05:27:01,422 - INFO - Processed 148100000 reads so far
2011-05-20 05:27:12,120 - INFO - Processed 148200000 reads so far
2011-05-20 05:27:21,221 - INFO - Processed 148300000 reads so far
2011-05-20 05:27:30,329 - INFO - Processed 148400000 reads so far
2011-05-20 05:27:39,949 - INFO - Processed 148500000 reads so far
2011-05-20 05:27:47,409 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:62990224-83010224
2011-05-20 05:27:51,769 - INFO - Processed 148600000 reads so far
2011-05-20 05:28:01,160 - INFO - Processed 148700000 reads so far
2011-05-20 05:28:10,762 - INFO - Processed 148800000 reads so far
2011-05-20 05:28:19,914 - INFO - Processed 148900000 reads so far
2011-05-20 05:28:30,800 - INFO - Processed 149000000 reads so far
2011-05-20 05:28:40,751 - INFO - Processed 149100000 reads so far
2011-05-20 05:28:51,126 - INFO - Processed 149200000 reads so far
2011-05-20 05:29:00,286 - INFO - Processed 149300000 reads so far
2011-05-20 05:29:09,102 - INFO - Processed 149400000 reads so far
2011-05-20 05:29:19,744 - INFO - Processed 149500000 reads so far
2011-05-20 05:29:29,917 - INFO - Processed 149600000 reads so far
2011-05-20 05:29:39,463 - INFO - Processed 149700000 reads so far
2011-05-20 05:29:48,469 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:82990239-103010239
2011-05-20 05:29:49,229 - INFO - Processed 149800000 reads so far
2011-05-20 05:29:59,150 - INFO - Processed 149900000 reads so far
2011-05-20 05:30:07,935 - INFO - Processed 150000000 reads so far
2011-05-20 05:30:17,300 - INFO - Processed 150100000 reads so far
2011-05-20 05:30:28,960 - INFO - Processed 150200000 reads so far
2011-05-20 05:30:38,015 - INFO - Processed 150300000 reads so far
2011-05-20 05:30:48,045 - INFO - Processed 150400000 reads so far
2011-05-20 05:30:56,874 - INFO - Processed 150500000 reads so far
2011-05-20 05:31:06,410 - INFO - Processed 150600000 reads so far
2011-05-20 05:31:16,810 - INFO - Processed 150700000 reads so far
2011-05-20 05:31:27,076 - INFO - Processed 150800000 reads so far
2011-05-20 05:31:36,735 - INFO - Processed 150900000 reads so far
2011-05-20 05:31:45,751 - INFO - Processed 151000000 reads so far
2011-05-20 05:31:47,921 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:102990247-123010247
2011-05-20 05:31:58,926 - INFO - Processed 151100000 reads so far
2011-05-20 05:32:09,020 - INFO - Processed 151200000 reads so far
2011-05-20 05:32:22,075 - INFO - Processed 151300000 reads so far
2011-05-20 05:32:31,534 - INFO - Processed 151400000 reads so far
2011-05-20 05:32:45,093 - INFO - Processed 151500000 reads so far
2011-05-20 05:32:55,300 - INFO - Processed 151600000 reads so far
2011-05-20 05:33:07,338 - INFO - Processed 151700000 reads so far
2011-05-20 05:33:16,103 - INFO - Processed 151800000 reads so far
2011-05-20 05:33:25,822 - INFO - Processed 151900000 reads so far
2011-05-20 05:33:35,546 - INFO - Processed 152000000 reads so far
2011-05-20 05:33:46,338 - INFO - Processed 152100000 reads so far
2011-05-20 05:33:56,820 - INFO - Processed 152200000 reads so far
2011-05-20 05:33:58,463 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:122990251-143010251
2011-05-20 05:34:07,965 - INFO - Processed 152300000 reads so far
2011-05-20 05:34:19,044 - INFO - Processed 152400000 reads so far
2011-05-20 05:34:29,694 - INFO - Processed 152500000 reads so far
2011-05-20 05:34:39,675 - INFO - Processed 152600000 reads so far
2011-05-20 05:34:49,142 - INFO - Processed 152700000 reads so far
2011-05-20 05:34:52,525 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8_random:0-20010002
2011-05-20 05:34:59,697 - INFO - Processed 152800000 reads so far
2011-05-20 05:35:02,775 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:2989957-23009957
2011-05-20 05:35:07,210 - INFO - Processed 152900000 reads so far
2011-05-20 05:35:15,015 - INFO - Processed 153000000 reads so far
2011-05-20 05:35:21,799 - INFO - Processed 153100000 reads so far
2011-05-20 05:35:30,336 - INFO - Processed 153200000 reads so far
2011-05-20 05:35:38,862 - INFO - Processed 153300000 reads so far
2011-05-20 05:35:47,796 - INFO - Processed 153400000 reads so far
2011-05-20 05:35:55,213 - INFO - Processed 153500000 reads so far
2011-05-20 05:36:03,827 - INFO - Processed 153600000 reads so far
2011-05-20 05:36:12,893 - INFO - Processed 153700000 reads so far
2011-05-20 05:36:21,545 - INFO - Processed 153800000 reads so far
2011-05-20 05:36:29,807 - INFO - Processed 153900000 reads so far
2011-05-20 05:36:37,490 - INFO - Processed 154000000 reads so far
2011-05-20 05:36:46,601 - INFO - Processed 154100000 reads so far
2011-05-20 05:36:54,817 - INFO - Processed 154200000 reads so far
2011-05-20 05:37:03,059 - INFO - Processed 154300000 reads so far
2011-05-20 05:37:10,302 - INFO - Processed 154400000 reads so far
2011-05-20 05:37:21,243 - INFO - Processed 154500000 reads so far
2011-05-20 05:37:30,100 - INFO - Processed 154600000 reads so far
2011-05-20 05:37:36,917 - INFO - Processed 154700000 reads so far
2011-05-20 05:37:44,382 - INFO - Processed 154800000 reads so far
2011-05-20 05:37:53,969 - INFO - Processed 154900000 reads so far
2011-05-20 05:38:01,572 - INFO - Processed 155000000 reads so far
2011-05-20 05:38:08,969 - INFO - Processed 155100000 reads so far
2011-05-20 05:38:18,286 - INFO - Processed 155200000 reads so far
2011-05-20 05:38:25,531 - INFO - Processed 155300000 reads so far
2011-05-20 05:38:35,171 - INFO - Processed 155400000 reads so far
2011-05-20 05:38:42,032 - INFO - Processed 155500000 reads so far
2011-05-20 05:38:49,269 - INFO - Processed 155600000 reads so far
2011-05-20 05:38:58,531 - INFO - Processed 155700000 reads so far
2011-05-20 05:39:07,475 - INFO - Processed 155800000 reads so far
2011-05-20 05:39:15,106 - INFO - Processed 155900000 reads so far
2011-05-20 05:39:21,850 - INFO - Processed 156000000 reads so far
2011-05-20 05:39:28,811 - INFO - Processed 156100000 reads so far
2011-05-20 05:39:38,572 - INFO - Processed 156200000 reads so far
2011-05-20 05:39:47,923 - INFO - Processed 156300000 reads so far
2011-05-20 05:39:57,324 - INFO - Processed 156400000 reads so far
2011-05-20 05:40:07,237 - INFO - Processed 156500000 reads so far
2011-05-20 05:40:16,504 - INFO - Processed 156600000 reads so far
2011-05-20 05:40:25,804 - INFO - Processed 156700000 reads so far
2011-05-20 05:40:34,620 - INFO - Processed 156800000 reads so far
2011-05-20 05:40:45,140 - INFO - Processed 156900000 reads so far
2011-05-20 05:40:53,011 - INFO - Processed 157000000 reads so far
2011-05-20 05:40:59,575 - INFO - Processed 157100000 reads so far
2011-05-20 05:41:05,568 - INFO - Processed 157200000 reads so far
2011-05-20 05:41:13,865 - INFO - Processed 157300000 reads so far
2011-05-20 05:41:22,578 - INFO - Processed 157400000 reads so far
2011-05-20 05:41:30,628 - INFO - Processed 157500000 reads so far
2011-05-20 05:41:40,303 - INFO - Processed 157600000 reads so far
2011-05-20 05:41:46,975 - INFO - Processed 157700000 reads so far
2011-05-20 05:41:56,361 - INFO - Processed 157800000 reads so far
2011-05-20 05:42:06,092 - INFO - Processed 157900000 reads so far
2011-05-20 05:42:16,213 - INFO - Processed 158000000 reads so far
2011-05-20 05:42:29,788 - INFO - Processed 158100000 reads so far
2011-05-20 05:42:36,487 - INFO - Processed 158200000 reads so far
2011-05-20 05:42:43,006 - INFO - Processed 158300000 reads so far
2011-05-20 05:42:51,242 - INFO - Processed 158400000 reads so far
2011-05-20 05:42:59,141 - INFO - Processed 158500000 reads so far
2011-05-20 05:43:08,577 - INFO - Processed 158600000 reads so far
2011-05-20 05:43:16,402 - INFO - Processed 158700000 reads so far
2011-05-20 05:43:23,130 - INFO - Processed 158800000 reads so far
2011-05-20 05:43:29,799 - INFO - Processed 158900000 reads so far
2011-05-20 05:43:36,639 - INFO - Processed 159000000 reads so far
2011-05-20 05:43:43,579 - INFO - Processed 159100000 reads so far
2011-05-20 05:43:53,105 - INFO - Processed 159200000 reads so far
2011-05-20 05:43:59,480 - INFO - Processed 159300000 reads so far
2011-05-20 05:44:07,002 - INFO - Processed 159400000 reads so far
2011-05-20 05:44:14,761 - INFO - Processed 159500000 reads so far
2011-05-20 05:44:22,001 - INFO - Processed 159600000 reads so far
2011-05-20 05:44:29,077 - INFO - Processed 159700000 reads so far
2011-05-20 05:44:37,291 - INFO - Processed 159800000 reads so far
2011-05-20 05:44:46,330 - INFO - Processed 159900000 reads so far
2011-05-20 05:44:53,340 - INFO - Processed 160000000 reads so far
2011-05-20 05:44:59,947 - INFO - Processed 160100000 reads so far
2011-05-20 05:45:06,528 - INFO - Processed 160200000 reads so far
2011-05-20 05:45:13,452 - INFO - Processed 160300000 reads so far
2011-05-20 05:45:21,333 - INFO - Processed 160400000 reads so far
2011-05-20 05:45:29,820 - INFO - Processed 160500000 reads so far
2011-05-20 05:45:39,384 - INFO - Processed 160600000 reads so far
2011-05-20 05:45:47,463 - INFO - Processed 160700000 reads so far
2011-05-20 05:45:56,793 - INFO - Processed 160800000 reads so far
2011-05-20 05:46:06,632 - INFO - Processed 160900000 reads so far
2011-05-20 05:46:18,954 - INFO - Processed 161000000 reads so far
2011-05-20 05:46:31,108 - INFO - Processed 161100000 reads so far
2011-05-20 05:46:40,656 - INFO - Processed 161200000 reads so far
2011-05-20 05:46:49,926 - INFO - Processed 161300000 reads so far
2011-05-20 05:47:00,115 - INFO - Processed 161400000 reads so far
2011-05-20 05:47:09,569 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:22989960-43009960
2011-05-20 05:47:10,182 - INFO - Processed 161500000 reads so far
2011-05-20 05:47:19,787 - INFO - Processed 161600000 reads so far
2011-05-20 05:47:29,034 - INFO - Processed 161700000 reads so far
2011-05-20 05:47:38,502 - INFO - Processed 161800000 reads so far
2011-05-20 05:47:47,373 - INFO - Processed 161900000 reads so far
2011-05-20 05:47:57,868 - INFO - Processed 162000000 reads so far
2011-05-20 05:48:11,466 - INFO - Processed 162100000 reads so far
2011-05-20 05:48:21,099 - INFO - Processed 162200000 reads so far
2011-05-20 05:48:31,403 - INFO - Processed 162300000 reads so far
2011-05-20 05:48:38,231 - INFO - Processed 162400000 reads so far
2011-05-20 05:48:47,785 - INFO - Processed 162500000 reads so far
2011-05-20 05:48:57,421 - INFO - Processed 162600000 reads so far
2011-05-20 05:49:09,110 - INFO - Processed 162700000 reads so far
2011-05-20 05:49:20,045 - INFO - Processed 162800000 reads so far
2011-05-20 05:49:32,310 - INFO - Processed 162900000 reads so far
2011-05-20 05:49:35,668 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:42989965-63009965
2011-05-20 05:49:45,676 - INFO - Processed 163000000 reads so far
2011-05-20 05:49:56,538 - INFO - Processed 163100000 reads so far
2011-05-20 05:50:06,246 - INFO - Processed 163200000 reads so far
2011-05-20 05:50:17,595 - INFO - Processed 163300000 reads so far
2011-05-20 05:50:26,939 - INFO - Processed 163400000 reads so far
2011-05-20 05:50:36,907 - INFO - Processed 163500000 reads so far
2011-05-20 05:50:47,103 - INFO - Processed 163600000 reads so far
2011-05-20 05:50:56,686 - INFO - Processed 163700000 reads so far
2011-05-20 05:51:06,091 - INFO - Processed 163800000 reads so far
2011-05-20 05:51:14,588 - INFO - Processed 163900000 reads so far
2011-05-20 05:51:23,182 - INFO - Processed 164000000 reads so far
2011-05-20 05:51:36,861 - INFO - Processed 164100000 reads so far
2011-05-20 05:51:43,012 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:62989967-83009967
2011-05-20 05:51:47,702 - INFO - Processed 164200000 reads so far
2011-05-20 05:51:58,732 - INFO - Processed 164300000 reads so far
2011-05-20 05:52:09,706 - INFO - Processed 164400000 reads so far
2011-05-20 05:52:21,748 - INFO - Processed 164500000 reads so far
2011-05-20 05:52:30,474 - INFO - Processed 164600000 reads so far
2011-05-20 05:52:41,580 - INFO - Processed 164700000 reads so far
2011-05-20 05:52:51,845 - INFO - Processed 164800000 reads so far
2011-05-20 05:53:03,273 - INFO - Processed 164900000 reads so far
2011-05-20 05:53:14,878 - INFO - Processed 165000000 reads so far
2011-05-20 05:53:25,553 - INFO - Processed 165100000 reads so far
2011-05-20 05:53:34,427 - INFO - Processed 165200000 reads so far
2011-05-20 05:53:43,556 - INFO - Processed 165300000 reads so far
2011-05-20 05:53:54,255 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:82989979-103009979
2011-05-20 05:53:54,558 - INFO - Processed 165400000 reads so far
2011-05-20 05:54:05,593 - INFO - Processed 165500000 reads so far
2011-05-20 05:54:17,055 - INFO - Processed 165600000 reads so far
2011-05-20 05:54:28,162 - INFO - Processed 165700000 reads so far
2011-05-20 05:54:38,661 - INFO - Processed 165800000 reads so far
2011-05-20 05:54:51,331 - INFO - Processed 165900000 reads so far
2011-05-20 05:55:03,671 - INFO - Processed 166000000 reads so far
2011-05-20 05:55:12,207 - INFO - Processed 166100000 reads so far
2011-05-20 05:55:21,130 - INFO - Processed 166200000 reads so far
2011-05-20 05:55:30,302 - INFO - Processed 166300000 reads so far
2011-05-20 05:55:40,188 - INFO - Processed 166400000 reads so far
2011-05-20 05:55:50,210 - INFO - Processed 166500000 reads so far
2011-05-20 05:55:59,382 - INFO - Processed 166600000 reads so far
2011-05-20 05:56:04,074 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:102989989-123009989
2011-05-20 05:56:09,558 - INFO - Processed 166700000 reads so far
2011-05-20 05:56:19,220 - INFO - Processed 166800000 reads so far
2011-05-20 05:56:28,021 - INFO - Processed 166900000 reads so far
2011-05-20 05:56:41,859 - INFO - Processed 167000000 reads so far
2011-05-20 05:56:51,142 - INFO - Processed 167100000 reads so far
2011-05-20 05:56:59,477 - INFO - Processed 167200000 reads so far
2011-05-20 05:57:09,403 - INFO - Processed 167300000 reads so far
2011-05-20 05:57:20,035 - INFO - Processed 167400000 reads so far
2011-05-20 05:57:29,969 - INFO - Processed 167500000 reads so far
2011-05-20 05:57:39,250 - INFO - Processed 167600000 reads so far
2011-05-20 05:57:47,799 - INFO - Processed 167700000 reads so far
2011-05-20 05:57:56,542 - INFO - Processed 167800000 reads so far
2011-05-20 05:58:03,395 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:122990004-143010004
2011-05-20 05:58:06,370 - INFO - Processed 167900000 reads so far
2011-05-20 05:58:09,796 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9_random:0-20010005
2011-05-20 05:58:13,073 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrM:0-20010000
2011-05-20 05:58:15,620 - INFO - Processed 168000000 reads so far
2011-05-20 05:58:21,291 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrUn_random:0-20010219
2011-05-20 05:58:22,820 - INFO - Processed 168100000 reads so far
2011-05-20 05:58:32,856 - INFO - Processed 168200000 reads so far
2011-05-20 05:58:43,915 - INFO - Processed 168300000 reads so far
2011-05-20 05:58:54,130 - INFO - Processed 168400000 reads so far
2011-05-20 05:59:03,698 - INFO - Processed 168500000 reads so far
2011-05-20 05:59:05,238 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:2990068-23010068
2011-05-20 05:59:16,300 - INFO - Processed 168600000 reads so far
2011-05-20 05:59:28,002 - INFO - Processed 168700000 reads so far
2011-05-20 05:59:39,744 - INFO - Processed 168800000 reads so far
2011-05-20 05:59:51,899 - INFO - Processed 168900000 reads so far
2011-05-20 06:00:03,537 - INFO - Processed 169000000 reads so far
2011-05-20 06:00:17,350 - INFO - Processed 169100000 reads so far
2011-05-20 06:00:27,744 - INFO - Processed 169200000 reads so far
2011-05-20 06:00:31,101 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:22990082-43010082
2011-05-20 06:00:38,065 - INFO - Processed 169300000 reads so far
2011-05-20 06:00:47,216 - INFO - Processed 169400000 reads so far
2011-05-20 06:00:55,255 - INFO - Processed 169500000 reads so far
2011-05-20 06:01:03,515 - INFO - Processed 169600000 reads so far
2011-05-20 06:01:11,929 - INFO - Processed 169700000 reads so far
2011-05-20 06:01:20,172 - INFO - Processed 169800000 reads so far
2011-05-20 06:01:39,443 - INFO - Processed 169900000 reads so far
2011-05-20 06:01:41,056 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:42990086-63010086
2011-05-20 06:01:50,665 - INFO - Processed 170000000 reads so far
2011-05-20 06:01:59,516 - INFO - Processed 170100000 reads so far
2011-05-20 06:02:08,595 - INFO - Processed 170200000 reads so far
2011-05-20 06:02:18,442 - INFO - Processed 170300000 reads so far
2011-05-20 06:02:29,831 - INFO - Processed 170400000 reads so far
2011-05-20 06:02:41,004 - INFO - Processed 170500000 reads so far
2011-05-20 06:02:47,503 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:62990195-83010195
2011-05-20 06:02:50,360 - INFO - Processed 170600000 reads so far
2011-05-20 06:03:01,713 - INFO - Processed 170700000 reads so far
2011-05-20 06:03:10,946 - INFO - Processed 170800000 reads so far
2011-05-20 06:03:21,369 - INFO - Processed 170900000 reads so far
2011-05-20 06:03:33,141 - INFO - Processed 171000000 reads so far
2011-05-20 06:03:45,947 - INFO - Processed 171100000 reads so far
2011-05-20 06:03:55,685 - INFO - Processed 171200000 reads so far
2011-05-20 06:03:57,885 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:82990278-103010278
2011-05-20 06:04:06,201 - INFO - Processed 171300000 reads so far
2011-05-20 06:04:15,717 - INFO - Processed 171400000 reads so far
2011-05-20 06:04:25,514 - INFO - Processed 171500000 reads so far
2011-05-20 06:04:36,154 - INFO - Processed 171600000 reads so far
2011-05-20 06:04:46,494 - INFO - Processed 171700000 reads so far
2011-05-20 06:04:59,314 - INFO - Processed 171800000 reads so far
2011-05-20 06:05:07,820 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:102990343-123010343
2011-05-20 06:05:09,814 - INFO - Processed 171900000 reads so far
2011-05-20 06:05:19,509 - INFO - Processed 172000000 reads so far
2011-05-20 06:05:31,171 - INFO - Processed 172100000 reads so far
2011-05-20 06:05:40,494 - INFO - Processed 172200000 reads so far
2011-05-20 06:05:50,314 - INFO - Processed 172300000 reads so far
2011-05-20 06:05:58,596 - INFO - Processed 172400000 reads so far
2011-05-20 06:06:08,425 - INFO - Processed 172500000 reads so far
2011-05-20 06:06:18,774 - INFO - Processed 172600000 reads so far
2011-05-20 06:06:23,969 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:122990377-143010377
2011-05-20 06:06:28,557 - INFO - Processed 172700000 reads so far
2011-05-20 06:06:41,547 - INFO - Processed 172800000 reads so far
2011-05-20 06:06:50,357 - INFO - Processed 172900000 reads so far
2011-05-20 06:07:01,505 - INFO - Processed 173000000 reads so far
2011-05-20 06:07:11,428 - INFO - Processed 173100000 reads so far
2011-05-20 06:07:21,307 - INFO - Processed 173200000 reads so far
2011-05-20 06:07:28,314 - INFO - Processed 173300000 reads so far
2011-05-20 06:07:37,257 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:142990414-163010414
2011-05-20 06:07:39,412 - INFO - Processed 173400000 reads so far
2011-05-20 06:07:50,083 - INFO - Processed 173500000 reads so far
2011-05-20 06:07:59,921 - INFO - Processed 173600000 reads so far
2011-05-20 06:08:10,896 - INFO - Processed 173700000 reads so far
2011-05-20 06:08:21,275 - INFO - Processed 173800000 reads so far
2011-05-20 06:08:32,532 - INFO - Processed 173900000 reads so far
2011-05-20 06:08:44,236 - INFO - Processed 174000000 reads so far
2011-05-20 06:08:47,991 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:162990501-183010501
2011-05-20 06:08:56,241 - INFO - Processed 174100000 reads so far
2011-05-20 06:09:07,331 - INFO - Processed 174200000 reads so far
2011-05-20 06:09:09,884 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX_random:0-20010000
2011-05-20 06:09:13,251 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY:0-20010000
2011-05-20 06:09:17,275 - INFO - Processed 174300000 reads so far
2011-05-20 06:09:25,929 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:0-20010372
2011-05-20 06:09:28,871 - INFO - Processed 174400000 reads so far
2011-05-20 06:09:41,199 - INFO - Processed 174500000 reads so far
2011-05-20 06:09:53,331 - INFO - Processed 174600000 reads so far
2011-05-20 06:10:04,051 - INFO - Processed 174700000 reads so far
2011-05-20 06:10:15,229 - INFO - Processed 174800000 reads so far
2011-05-20 06:10:27,145 - INFO - Processed 174900000 reads so far
2011-05-20 06:10:43,931 - INFO - Processed 175000000 reads so far
2011-05-20 06:10:56,825 - INFO - Processed 175100000 reads so far
2011-05-20 06:11:08,699 - INFO - Processed 175200000 reads so far
2011-05-20 06:11:19,486 - INFO - Processed 175300000 reads so far
2011-05-20 06:11:31,333 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:19990570-40010570
2011-05-20 06:11:33,970 - INFO - Processed 175400000 reads so far
2011-05-20 06:11:47,341 - INFO - Processed 175500000 reads so far
2011-05-20 06:12:00,181 - INFO - Processed 175600000 reads so far
2011-05-20 06:12:14,881 - INFO - Processed 175700000 reads so far
2011-05-20 06:12:34,080 - INFO - Processed 175800000 reads so far
2011-05-20 06:12:45,583 - INFO - Processed 175900000 reads so far
2011-05-20 06:12:47,767 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:39990572-60010572
2011-05-20 06:12:59,947 - INFO - Processed 176000000 reads so far
2011-05-20 06:13:12,347 - INFO - Processed 176100000 reads so far
2011-05-20 06:13:33,036 - INFO - Processed 176200000 reads so far
2011-05-20 06:13:44,673 - INFO - Processed 176300000 reads so far
2011-05-20 06:13:55,864 - INFO - Processed 176400000 reads so far
2011-05-20 06:14:05,952 - INFO - Processed 176500000 reads so far
2011-05-20 06:14:16,813 - INFO - Processed 176600000 reads so far
2011-05-20 06:14:27,417 - INFO - Processed 176700000 reads so far
2011-05-20 06:14:32,578 - INFO - Processed 176800000 reads so far
2011-05-20 06:14:38,678 - INFO - Processed 176900000 reads so far
2011-05-20 06:14:44,162 - INFO - Processed 177000000 reads so far
2011-05-20 06:14:48,661 - INFO - Processed 177100000 reads so far
2011-05-20 06:14:53,440 - INFO - Processed 177200000 reads so far
2011-05-20 06:14:57,699 - INFO - Processed 177300000 reads so far
2011-05-20 06:15:02,091 - INFO - Processed 177400000 reads so far
2011-05-20 06:15:06,500 - INFO - Processed 177500000 reads so far
2011-05-20 06:15:13,155 - INFO - Processed 177600000 reads so far
2011-05-20 06:15:17,558 - INFO - Processed 177700000 reads so far
2011-05-20 06:15:21,977 - INFO - Processed 177800000 reads so far
2011-05-20 06:15:27,084 - INFO - Processed 177900000 reads so far
2011-05-20 06:15:31,859 - INFO - Processed 178000000 reads so far
2011-05-20 06:15:36,269 - INFO - Processed 178100000 reads so far
2011-05-20 06:15:40,674 - INFO - Processed 178200000 reads so far
2011-05-20 06:15:46,070 - INFO - Processed 178300000 reads so far
2011-05-20 06:15:50,479 - INFO - Processed 178400000 reads so far
2011-05-20 06:15:56,254 - INFO - Processed 178500000 reads so far
2011-05-20 06:16:01,861 - INFO - Processed 178600000 reads so far
2011-05-20 06:16:06,302 - INFO - Processed 178700000 reads so far
2011-05-20 06:16:10,709 - INFO - Processed 178800000 reads so far
2011-05-20 06:16:16,590 - INFO - Processed 178900000 reads so far
2011-05-20 06:16:23,023 - INFO - Processed 179000000 reads so far
2011-05-20 06:16:23,900 - INFO - Finished loading data. Outputting QC metrics
2011-05-20 06:16:51,016 - INFO - Finished outputting QC metrics
2011-05-20 06:16:51,148 - INFO - Finished generating QC metrics