2011-05-20 06:56:12,538 - INFO - Generating QC metrics for BAM File ['WTCHG_12347.bam']
2011-05-20 06:56:12,538 - INFO - Output will go to WTCHG_12347.qc.txt.tmp
2011-05-20 06:56:12,538 - INFO - Reading GC Map from file /data/Genomes/gcMap/Mouse37.gcMap.gz
2011-05-20 06:59:23,544 - INFO - Finished reading GC Map
2011-05-20 06:59:23,544 - INFO - Reading CDS from exon definition file /data/Genomes/annotation/Mouse37.refGene.txt.gz
2011-05-20 06:59:26,487 - INFO - Read 382138 exons (33804740 nucleotides) for 32 chromosomes
2011-05-20 06:59:26,488 - INFO - Computing coverage cut-off
2011-05-20 06:59:26,488 - INFO - Retrieving BAM file coverage info from samtools pileup
2011-05-20 06:59:32,680 - INFO - Processed 1000000 pile-up sites
2011-05-20 06:59:36,269 - INFO - Processed 2000000 pile-up sites
2011-05-20 06:59:40,354 - INFO - Processed 3000000 pile-up sites
2011-05-20 06:59:44,779 - INFO - Processed 4000000 pile-up sites
2011-05-20 06:59:50,131 - INFO - Processed 5000000 pile-up sites
2011-05-20 06:59:54,451 - INFO - Processed 6000000 pile-up sites
2011-05-20 06:59:58,511 - INFO - Processed 7000000 pile-up sites
2011-05-20 07:00:02,579 - INFO - Processed 8000000 pile-up sites
2011-05-20 07:00:07,915 - INFO - Processed 9000000 pile-up sites
2011-05-20 07:00:12,553 - INFO - Processed 10000000 pile-up sites
2011-05-20 07:00:16,792 - INFO - Processed 11000000 pile-up sites
2011-05-20 07:00:21,129 - INFO - Processed 12000000 pile-up sites
2011-05-20 07:00:25,438 - INFO - Processed 13000000 pile-up sites
2011-05-20 07:00:29,792 - INFO - Processed 14000000 pile-up sites
2011-05-20 07:00:33,775 - INFO - Processed 15000000 pile-up sites
2011-05-20 07:00:38,028 - INFO - Processed 16000000 pile-up sites
2011-05-20 07:00:41,915 - INFO - Processed 17000000 pile-up sites
2011-05-20 07:00:46,320 - INFO - Processed 18000000 pile-up sites
2011-05-20 07:00:51,027 - INFO - Processed 19000000 pile-up sites
2011-05-20 07:00:55,712 - INFO - Processed 20000000 pile-up sites
2011-05-20 07:01:00,128 - INFO - Processed 21000000 pile-up sites
2011-05-20 07:01:03,899 - INFO - Processed 22000000 pile-up sites
2011-05-20 07:01:08,032 - INFO - Processed 23000000 pile-up sites
2011-05-20 07:01:12,572 - INFO - Processed 24000000 pile-up sites
2011-05-20 07:01:16,773 - INFO - Processed 25000000 pile-up sites
2011-05-20 07:01:20,996 - INFO - Processed 26000000 pile-up sites
2011-05-20 07:01:24,556 - INFO - Processed 27000000 pile-up sites
2011-05-20 07:01:30,008 - INFO - Processed 28000000 pile-up sites
2011-05-20 07:01:33,931 - INFO - Processed 29000000 pile-up sites
2011-05-20 07:01:37,753 - INFO - Processed 30000000 pile-up sites
2011-05-20 07:01:42,200 - INFO - Processed 31000000 pile-up sites
2011-05-20 07:01:46,182 - INFO - Processed 32000000 pile-up sites
2011-05-20 07:01:48,812 - INFO - Finished processing pile-up on 32730629 sites (200000007 nucleotides)
2011-05-20 07:01:48,812 - INFO - Coverage cut-off value is 27
2011-05-20 07:01:48,812 - INFO - Loading data into QC data manager
2011-05-20 07:01:48,986 - WARNING - Found RG tag 'SM' (value: 314) duplicated in CO field (value: 039/11) -- ignoring CO value
2011-05-20 07:01:48,986 - WARNING - Found RG tag 'ID' (value: WTCHG_12347) duplicated in CO field (value: 039/11) -- ignoring CO value
2011-05-20 07:01:48,986 - WARNING - Found RG tag 'SM' (value: 314) duplicated in CO field (value: 039/11) -- ignoring CO value
2011-05-20 07:01:48,986 - WARNING - Found RG tag 'ID' (value: WTCHG_12347) duplicated in CO field (value: 039/11) -- ignoring CO value
2011-05-20 07:01:48,986 - WARNING - Found RG tag 'SM' (value: 314) duplicated in CO field (value: 039/11) -- ignoring CO value
2011-05-20 07:01:48,986 - WARNING - Found RG tag 'ID' (value: WTCHG_12347) duplicated in CO field (value: 039/11) -- ignoring CO value
2011-05-20 07:01:48,986 - WARNING - Found RG tag 'SM' (value: 314) duplicated in CO field (value: 039/11) -- ignoring CO value
2011-05-20 07:01:48,986 - WARNING - Found RG tag 'ID' (value: WTCHG_12347) duplicated in CO field (value: 039/11) -- ignoring CO value
2011-05-20 07:01:49,042 - WARNING - Found RG tag 'SM' (value: 314) duplicated in CO field (value: 039/11) -- ignoring CO value
2011-05-20 07:01:49,042 - WARNING - Found RG tag 'ID' (value: WTCHG_12347) duplicated in CO field (value: 039/11) -- ignoring CO value
2011-05-20 07:01:49,042 - WARNING - Found RG tag 'SM' (value: 314) duplicated in CO field (value: 039/11) -- ignoring CO value
2011-05-20 07:01:49,042 - WARNING - Found RG tag 'ID' (value: WTCHG_12347) duplicated in CO field (value: 039/11) -- ignoring CO value
2011-05-20 07:01:49,043 - WARNING - Found RG tag 'SM' (value: 314) duplicated in CO field (value: 039/11) -- ignoring CO value
2011-05-20 07:01:49,043 - WARNING - Found RG tag 'ID' (value: WTCHG_12347) duplicated in CO field (value: 039/11) -- ignoring CO value
2011-05-20 07:01:49,043 - WARNING - Found RG tag 'SM' (value: 314) duplicated in CO field (value: 039/11) -- ignoring CO value
2011-05-20 07:01:49,043 - WARNING - Found RG tag 'ID' (value: WTCHG_12347) duplicated in CO field (value: 039/11) -- ignoring CO value
2011-05-20 07:01:49,052 - INFO - Reading data from BAM file WTCHG_12347.bam. All reads in file will be read
2011-05-20 07:01:49,096 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:2990004-23010004
2011-05-20 07:01:58,715 - INFO - Processed 100000 reads so far
2011-05-20 07:02:09,280 - INFO - Processed 200000 reads so far
2011-05-20 07:02:19,830 - INFO - Processed 300000 reads so far
2011-05-20 07:02:29,877 - INFO - Processed 400000 reads so far
2011-05-20 07:02:38,340 - INFO - Processed 500000 reads so far
2011-05-20 07:02:47,573 - INFO - Processed 600000 reads so far
2011-05-20 07:02:55,693 - INFO - Processed 700000 reads so far
2011-05-20 07:03:02,930 - INFO - Processed 800000 reads so far
2011-05-20 07:03:11,856 - INFO - Processed 900000 reads so far
2011-05-20 07:03:19,595 - INFO - Processed 1000000 reads so far
2011-05-20 07:03:27,434 - INFO - Processed 1100000 reads so far
2011-05-20 07:03:35,088 - INFO - Processed 1200000 reads so far
2011-05-20 07:03:36,126 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:22990005-43010005
2011-05-20 07:03:43,619 - INFO - Processed 1300000 reads so far
2011-05-20 07:03:50,951 - INFO - Processed 1400000 reads so far
2011-05-20 07:03:57,834 - INFO - Processed 1500000 reads so far
2011-05-20 07:04:04,705 - INFO - Processed 1600000 reads so far
2011-05-20 07:04:12,344 - INFO - Processed 1700000 reads so far
2011-05-20 07:04:22,522 - INFO - Processed 1800000 reads so far
2011-05-20 07:04:32,633 - INFO - Processed 1900000 reads so far
2011-05-20 07:04:42,731 - INFO - Processed 2000000 reads so far
2011-05-20 07:04:53,375 - INFO - Processed 2100000 reads so far
2011-05-20 07:05:04,045 - INFO - Processed 2200000 reads so far
2011-05-20 07:05:15,012 - INFO - Processed 2300000 reads so far
2011-05-20 07:05:23,782 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:42990030-63010030
2011-05-20 07:05:25,785 - INFO - Processed 2400000 reads so far
2011-05-20 07:05:36,400 - INFO - Processed 2500000 reads so far
2011-05-20 07:05:47,691 - INFO - Processed 2600000 reads so far
2011-05-20 07:05:58,373 - INFO - Processed 2700000 reads so far
2011-05-20 07:06:08,994 - INFO - Processed 2800000 reads so far
2011-05-20 07:06:17,572 - INFO - Processed 2900000 reads so far
2011-05-20 07:06:28,821 - INFO - Processed 3000000 reads so far
2011-05-20 07:06:41,081 - INFO - Processed 3100000 reads so far
2011-05-20 07:06:52,078 - INFO - Processed 3200000 reads so far
2011-05-20 07:07:02,418 - INFO - Processed 3300000 reads so far
2011-05-20 07:07:14,002 - INFO - Processed 3400000 reads so far
2011-05-20 07:07:26,336 - INFO - Processed 3500000 reads so far
2011-05-20 07:07:33,448 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:62990047-83010047
2011-05-20 07:07:37,325 - INFO - Processed 3600000 reads so far
2011-05-20 07:07:47,907 - INFO - Processed 3700000 reads so far
2011-05-20 07:07:58,881 - INFO - Processed 3800000 reads so far
2011-05-20 07:08:08,701 - INFO - Processed 3900000 reads so far
2011-05-20 07:08:17,247 - INFO - Processed 4000000 reads so far
2011-05-20 07:08:25,132 - INFO - Processed 4100000 reads so far
2011-05-20 07:08:32,369 - INFO - Processed 4200000 reads so far
2011-05-20 07:08:39,990 - INFO - Processed 4300000 reads so far
2011-05-20 07:08:49,409 - INFO - Processed 4400000 reads so far
2011-05-20 07:09:00,581 - INFO - Processed 4500000 reads so far
2011-05-20 07:09:11,828 - INFO - Processed 4600000 reads so far
2011-05-20 07:09:23,130 - INFO - Processed 4700000 reads so far
2011-05-20 07:09:33,628 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:82990051-103010051
2011-05-20 07:09:35,015 - INFO - Processed 4800000 reads so far
2011-05-20 07:09:43,704 - INFO - Processed 4900000 reads so far
2011-05-20 07:09:52,111 - INFO - Processed 5000000 reads so far
2011-05-20 07:10:11,898 - INFO - Processed 5100000 reads so far
2011-05-20 07:10:27,195 - INFO - Processed 5200000 reads so far
2011-05-20 07:10:37,969 - INFO - Processed 5300000 reads so far
2011-05-20 07:11:02,789 - INFO - Processed 5400000 reads so far
2011-05-20 07:11:16,676 - INFO - Processed 5500000 reads so far
2011-05-20 07:11:27,669 - INFO - Processed 5600000 reads so far
2011-05-20 07:11:36,615 - INFO - Processed 5700000 reads so far
2011-05-20 07:11:51,085 - INFO - Processed 5800000 reads so far
2011-05-20 07:12:01,647 - INFO - Processed 5900000 reads so far
2011-05-20 07:12:13,650 - INFO - Processed 6000000 reads so far
2011-05-20 07:12:13,684 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:102990064-123010064
2011-05-20 07:12:24,597 - INFO - Processed 6100000 reads so far
2011-05-20 07:12:32,441 - INFO - Processed 6200000 reads so far
2011-05-20 07:12:50,398 - INFO - Processed 6300000 reads so far
2011-05-20 07:12:58,250 - INFO - Processed 6400000 reads so far
2011-05-20 07:13:06,837 - INFO - Processed 6500000 reads so far
2011-05-20 07:13:18,547 - INFO - Processed 6600000 reads so far
2011-05-20 07:13:26,634 - INFO - Processed 6700000 reads so far
2011-05-20 07:13:34,812 - INFO - Processed 6800000 reads so far
2011-05-20 07:13:46,998 - INFO - Processed 6900000 reads so far
2011-05-20 07:13:54,846 - INFO - Processed 7000000 reads so far
2011-05-20 07:14:02,159 - INFO - Processed 7100000 reads so far
2011-05-20 07:14:06,832 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:122990067-143010067
2011-05-20 07:14:09,999 - INFO - Processed 7200000 reads so far
2011-05-20 07:14:18,743 - INFO - Processed 7300000 reads so far
2011-05-20 07:14:27,657 - INFO - Processed 7400000 reads so far
2011-05-20 07:14:37,816 - INFO - Processed 7500000 reads so far
2011-05-20 07:14:44,498 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:2990003-23010003
2011-05-20 07:14:46,945 - INFO - Processed 7600000 reads so far
2011-05-20 07:14:54,558 - INFO - Processed 7700000 reads so far
2011-05-20 07:15:02,131 - INFO - Processed 7800000 reads so far
2011-05-20 07:15:10,503 - INFO - Processed 7900000 reads so far
2011-05-20 07:15:19,174 - INFO - Processed 8000000 reads so far
2011-05-20 07:15:27,730 - INFO - Processed 8100000 reads so far
2011-05-20 07:15:35,274 - INFO - Processed 8200000 reads so far
2011-05-20 07:15:43,915 - INFO - Processed 8300000 reads so far
2011-05-20 07:15:54,412 - INFO - Processed 8400000 reads so far
2011-05-20 07:16:03,240 - INFO - Processed 8500000 reads so far
2011-05-20 07:16:13,174 - INFO - Processed 8600000 reads so far
2011-05-20 07:16:21,612 - INFO - Processed 8700000 reads so far
2011-05-20 07:16:30,796 - INFO - Processed 8800000 reads so far
2011-05-20 07:16:40,651 - INFO - Processed 8900000 reads so far
2011-05-20 07:16:46,319 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:22990077-43010077
2011-05-20 07:16:47,845 - INFO - Processed 9000000 reads so far
2011-05-20 07:16:57,100 - INFO - Processed 9100000 reads so far
2011-05-20 07:17:04,857 - INFO - Processed 9200000 reads so far
2011-05-20 07:17:15,007 - INFO - Processed 9300000 reads so far
2011-05-20 07:17:25,806 - INFO - Processed 9400000 reads so far
2011-05-20 07:17:33,450 - INFO - Processed 9500000 reads so far
2011-05-20 07:17:41,815 - INFO - Processed 9600000 reads so far
2011-05-20 07:17:49,920 - INFO - Processed 9700000 reads so far
2011-05-20 07:17:58,865 - INFO - Processed 9800000 reads so far
2011-05-20 07:18:06,470 - INFO - Processed 9900000 reads so far
2011-05-20 07:18:16,118 - INFO - Processed 10000000 reads so far
2011-05-20 07:18:23,905 - INFO - Processed 10100000 reads so far
2011-05-20 07:18:27,461 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:42990079-63010079
2011-05-20 07:18:31,467 - INFO - Processed 10200000 reads so far
2011-05-20 07:18:41,642 - INFO - Processed 10300000 reads so far
2011-05-20 07:18:49,114 - INFO - Processed 10400000 reads so far
2011-05-20 07:18:59,601 - INFO - Processed 10500000 reads so far
2011-05-20 07:19:13,823 - INFO - Processed 10600000 reads so far
2011-05-20 07:19:22,409 - INFO - Processed 10700000 reads so far
2011-05-20 07:19:30,370 - INFO - Processed 10800000 reads so far
2011-05-20 07:19:38,360 - INFO - Processed 10900000 reads so far
2011-05-20 07:19:49,173 - INFO - Processed 11000000 reads so far
2011-05-20 07:19:56,958 - INFO - Processed 11100000 reads so far
2011-05-20 07:20:06,314 - INFO - Processed 11200000 reads so far
2011-05-20 07:20:16,414 - INFO - Processed 11300000 reads so far
2011-05-20 07:20:24,194 - INFO - Processed 11400000 reads so far
2011-05-20 07:20:27,282 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:62990088-83010088
2011-05-20 07:20:32,408 - INFO - Processed 11500000 reads so far
2011-05-20 07:20:40,703 - INFO - Processed 11600000 reads so far
2011-05-20 07:20:51,447 - INFO - Processed 11700000 reads so far
2011-05-20 07:21:00,244 - INFO - Processed 11800000 reads so far
2011-05-20 07:21:11,197 - INFO - Processed 11900000 reads so far
2011-05-20 07:21:21,861 - INFO - Processed 12000000 reads so far
2011-05-20 07:21:32,693 - INFO - Processed 12100000 reads so far
2011-05-20 07:21:44,932 - INFO - Processed 12200000 reads so far
2011-05-20 07:21:57,280 - INFO - Processed 12300000 reads so far
2011-05-20 07:22:12,031 - INFO - Processed 12400000 reads so far
2011-05-20 07:22:23,957 - INFO - Processed 12500000 reads so far
2011-05-20 07:22:35,513 - INFO - Processed 12600000 reads so far
2011-05-20 07:22:45,844 - INFO - Processed 12700000 reads so far
2011-05-20 07:22:47,002 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:82990101-103010101
2011-05-20 07:22:56,591 - INFO - Processed 12800000 reads so far
2011-05-20 07:23:07,398 - INFO - Processed 12900000 reads so far
2011-05-20 07:23:20,722 - INFO - Processed 13000000 reads so far
2011-05-20 07:23:32,712 - INFO - Processed 13100000 reads so far
2011-05-20 07:23:43,656 - INFO - Processed 13200000 reads so far
2011-05-20 07:23:54,935 - INFO - Processed 13300000 reads so far
2011-05-20 07:24:05,954 - INFO - Processed 13400000 reads so far
2011-05-20 07:24:18,700 - INFO - Processed 13500000 reads so far
2011-05-20 07:24:30,038 - INFO - Processed 13600000 reads so far
2011-05-20 07:24:41,297 - INFO - Processed 13700000 reads so far
2011-05-20 07:24:53,864 - INFO - Processed 13800000 reads so far
2011-05-20 07:25:06,368 - INFO - Processed 13900000 reads so far
2011-05-20 07:25:11,196 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:102990117-123010117
2011-05-20 07:25:15,742 - INFO - Processed 14000000 reads so far
2011-05-20 07:25:23,230 - INFO - Processed 14100000 reads so far
2011-05-20 07:25:31,297 - INFO - Processed 14200000 reads so far
2011-05-20 07:25:40,277 - INFO - Processed 14300000 reads so far
2011-05-20 07:25:46,995 - INFO - Processed 14400000 reads so far
2011-05-20 07:25:55,455 - INFO - Processed 14500000 reads so far
2011-05-20 07:26:03,066 - INFO - Processed 14600000 reads so far
2011-05-20 07:26:11,685 - INFO - Processed 14700000 reads so far
2011-05-20 07:26:22,174 - INFO - Processed 14800000 reads so far
2011-05-20 07:26:30,391 - INFO - Processed 14900000 reads so far
2011-05-20 07:26:37,579 - INFO - Processed 15000000 reads so far
2011-05-20 07:26:46,089 - INFO - Processed 15100000 reads so far
2011-05-20 07:26:53,966 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:2990011-23010011
2011-05-20 07:26:55,423 - INFO - Processed 15200000 reads so far
2011-05-20 07:27:01,852 - INFO - Processed 15300000 reads so far
2011-05-20 07:27:08,251 - INFO - Processed 15400000 reads so far
2011-05-20 07:27:16,213 - INFO - Processed 15500000 reads so far
2011-05-20 07:27:23,961 - INFO - Processed 15600000 reads so far
2011-05-20 07:27:32,254 - INFO - Processed 15700000 reads so far
2011-05-20 07:27:39,336 - INFO - Processed 15800000 reads so far
2011-05-20 07:27:49,264 - INFO - Processed 15900000 reads so far
2011-05-20 07:27:57,853 - INFO - Processed 16000000 reads so far
2011-05-20 07:28:08,820 - INFO - Processed 16100000 reads so far
2011-05-20 07:28:17,142 - INFO - Processed 16200000 reads so far
2011-05-20 07:28:24,929 - INFO - Processed 16300000 reads so far
2011-05-20 07:28:32,582 - INFO - Processed 16400000 reads so far
2011-05-20 07:28:39,576 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:22990186-43010186
2011-05-20 07:28:40,263 - INFO - Processed 16500000 reads so far
2011-05-20 07:28:48,388 - INFO - Processed 16600000 reads so far
2011-05-20 07:28:55,740 - INFO - Processed 16700000 reads so far
2011-05-20 07:29:05,953 - INFO - Processed 16800000 reads so far
2011-05-20 07:29:14,594 - INFO - Processed 16900000 reads so far
2011-05-20 07:29:23,108 - INFO - Processed 17000000 reads so far
2011-05-20 07:29:29,690 - INFO - Processed 17100000 reads so far
2011-05-20 07:29:36,397 - INFO - Processed 17200000 reads so far
2011-05-20 07:29:45,680 - INFO - Processed 17300000 reads so far
2011-05-20 07:29:53,848 - INFO - Processed 17400000 reads so far
2011-05-20 07:30:00,974 - INFO - Processed 17500000 reads so far
2011-05-20 07:30:09,955 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:42990189-63010189
2011-05-20 07:30:10,024 - INFO - Processed 17600000 reads so far
2011-05-20 07:30:20,326 - INFO - Processed 17700000 reads so far
2011-05-20 07:30:28,368 - INFO - Processed 17800000 reads so far
2011-05-20 07:30:37,257 - INFO - Processed 17900000 reads so far
2011-05-20 07:30:45,424 - INFO - Processed 18000000 reads so far
2011-05-20 07:30:54,696 - INFO - Processed 18100000 reads so far
2011-05-20 07:31:02,719 - INFO - Processed 18200000 reads so far
2011-05-20 07:31:10,373 - INFO - Processed 18300000 reads so far
2011-05-20 07:31:21,877 - INFO - Processed 18400000 reads so far
2011-05-20 07:31:37,131 - INFO - Processed 18500000 reads so far
2011-05-20 07:31:46,178 - INFO - Processed 18600000 reads so far
2011-05-20 07:31:53,488 - INFO - Processed 18700000 reads so far
2011-05-20 07:31:55,212 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:62990244-83010244
2011-05-20 07:32:00,413 - INFO - Processed 18800000 reads so far
2011-05-20 07:32:10,384 - INFO - Processed 18900000 reads so far
2011-05-20 07:32:19,561 - INFO - Processed 19000000 reads so far
2011-05-20 07:32:27,241 - INFO - Processed 19100000 reads so far
2011-05-20 07:32:34,347 - INFO - Processed 19200000 reads so far
2011-05-20 07:32:41,669 - INFO - Processed 19300000 reads so far
2011-05-20 07:32:49,597 - INFO - Processed 19400000 reads so far
2011-05-20 07:32:57,172 - INFO - Processed 19500000 reads so far
2011-05-20 07:33:04,324 - INFO - Processed 19600000 reads so far
2011-05-20 07:33:11,360 - INFO - Processed 19700000 reads so far
2011-05-20 07:33:18,341 - INFO - Processed 19800000 reads so far
2011-05-20 07:33:28,617 - INFO - Processed 19900000 reads so far
2011-05-20 07:33:28,749 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:82990245-103010245
2011-05-20 07:33:37,616 - INFO - Processed 20000000 reads so far
2011-05-20 07:33:45,426 - INFO - Processed 20100000 reads so far
2011-05-20 07:33:53,311 - INFO - Processed 20200000 reads so far
2011-05-20 07:34:01,920 - INFO - Processed 20300000 reads so far
2011-05-20 07:34:11,625 - INFO - Processed 20400000 reads so far
2011-05-20 07:34:19,153 - INFO - Processed 20500000 reads so far
2011-05-20 07:34:27,467 - INFO - Processed 20600000 reads so far
2011-05-20 07:34:38,508 - INFO - Processed 20700000 reads so far
2011-05-20 07:34:47,718 - INFO - Processed 20800000 reads so far
2011-05-20 07:34:55,505 - INFO - Processed 20900000 reads so far
2011-05-20 07:35:06,886 - INFO - Processed 21000000 reads so far
2011-05-20 07:35:21,238 - INFO - Processed 21100000 reads so far
2011-05-20 07:35:25,356 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:102990277-123010277
2011-05-20 07:35:35,304 - INFO - Processed 21200000 reads so far
2011-05-20 07:35:47,387 - INFO - Processed 21300000 reads so far
2011-05-20 07:35:55,809 - INFO - Processed 21400000 reads so far
2011-05-20 07:36:02,444 - INFO - Processed 21500000 reads so far
2011-05-20 07:36:11,249 - INFO - Processed 21600000 reads so far
2011-05-20 07:36:20,532 - INFO - Processed 21700000 reads so far
2011-05-20 07:36:29,860 - INFO - Processed 21800000 reads so far
2011-05-20 07:36:37,924 - INFO - Processed 21900000 reads so far
2011-05-20 07:36:45,344 - INFO - Processed 22000000 reads so far
2011-05-20 07:36:52,276 - INFO - Processed 22100000 reads so far
2011-05-20 07:36:59,317 - INFO - Processed 22200000 reads so far
2011-05-20 07:37:06,017 - INFO - Processed 22300000 reads so far
2011-05-20 07:37:08,465 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:2990066-23010066
2011-05-20 07:37:13,045 - INFO - Processed 22400000 reads so far
2011-05-20 07:37:21,468 - INFO - Processed 22500000 reads so far
2011-05-20 07:37:30,973 - INFO - Processed 22600000 reads so far
2011-05-20 07:37:37,666 - INFO - Processed 22700000 reads so far
2011-05-20 07:37:44,498 - INFO - Processed 22800000 reads so far
2011-05-20 07:37:52,145 - INFO - Processed 22900000 reads so far
2011-05-20 07:38:00,813 - INFO - Processed 23000000 reads so far
2011-05-20 07:38:08,150 - INFO - Processed 23100000 reads so far
2011-05-20 07:38:15,529 - INFO - Processed 23200000 reads so far
2011-05-20 07:38:24,997 - INFO - Processed 23300000 reads so far
2011-05-20 07:38:34,395 - INFO - Processed 23400000 reads so far
2011-05-20 07:38:43,211 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:22990077-43010077
2011-05-20 07:38:44,257 - INFO - Processed 23500000 reads so far
2011-05-20 07:38:52,190 - INFO - Processed 23600000 reads so far
2011-05-20 07:39:01,449 - INFO - Processed 23700000 reads so far
2011-05-20 07:39:15,962 - INFO - Processed 23800000 reads so far
2011-05-20 07:39:27,406 - INFO - Processed 23900000 reads so far
2011-05-20 07:39:37,958 - INFO - Processed 24000000 reads so far
2011-05-20 07:39:50,186 - INFO - Processed 24100000 reads so far
2011-05-20 07:40:02,258 - INFO - Processed 24200000 reads so far
2011-05-20 07:40:14,205 - INFO - Processed 24300000 reads so far
2011-05-20 07:40:24,970 - INFO - Processed 24400000 reads so far
2011-05-20 07:40:36,301 - INFO - Processed 24500000 reads so far
2011-05-20 07:40:48,439 - INFO - Processed 24600000 reads so far
2011-05-20 07:41:01,203 - INFO - Processed 24700000 reads so far
2011-05-20 07:41:03,672 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:42990081-63010081
2011-05-20 07:41:10,825 - INFO - Processed 24800000 reads so far
2011-05-20 07:41:18,826 - INFO - Processed 24900000 reads so far
2011-05-20 07:41:28,516 - INFO - Processed 25000000 reads so far
2011-05-20 07:41:36,798 - INFO - Processed 25100000 reads so far
2011-05-20 07:41:46,707 - INFO - Processed 25200000 reads so far
2011-05-20 07:41:56,315 - INFO - Processed 25300000 reads so far
2011-05-20 07:42:05,484 - INFO - Processed 25400000 reads so far
2011-05-20 07:42:14,090 - INFO - Processed 25500000 reads so far
2011-05-20 07:42:23,898 - INFO - Processed 25600000 reads so far
2011-05-20 07:42:32,585 - INFO - Processed 25700000 reads so far
2011-05-20 07:42:40,410 - INFO - Processed 25800000 reads so far
2011-05-20 07:42:48,155 - INFO - Processed 25900000 reads so far
2011-05-20 07:42:58,222 - INFO - Processed 26000000 reads so far
2011-05-20 07:42:59,853 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:62990096-83010096
2011-05-20 07:43:06,901 - INFO - Processed 26100000 reads so far
2011-05-20 07:43:16,560 - INFO - Processed 26200000 reads so far
2011-05-20 07:43:24,939 - INFO - Processed 26300000 reads so far
2011-05-20 07:43:34,741 - INFO - Processed 26400000 reads so far
2011-05-20 07:43:43,324 - INFO - Processed 26500000 reads so far
2011-05-20 07:43:52,698 - INFO - Processed 26600000 reads so far
2011-05-20 07:44:00,785 - INFO - Processed 26700000 reads so far
2011-05-20 07:44:10,835 - INFO - Processed 26800000 reads so far
2011-05-20 07:44:19,458 - INFO - Processed 26900000 reads so far
2011-05-20 07:44:28,908 - INFO - Processed 27000000 reads so far
2011-05-20 07:44:36,822 - INFO - Processed 27100000 reads so far
2011-05-20 07:44:44,755 - INFO - Processed 27200000 reads so far
2011-05-20 07:44:47,089 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:82990115-103010115
2011-05-20 07:44:54,931 - INFO - Processed 27300000 reads so far
2011-05-20 07:45:04,364 - INFO - Processed 27400000 reads so far
2011-05-20 07:45:13,098 - INFO - Processed 27500000 reads so far
2011-05-20 07:45:21,422 - INFO - Processed 27600000 reads so far
2011-05-20 07:45:29,209 - INFO - Processed 27700000 reads so far
2011-05-20 07:45:37,765 - INFO - Processed 27800000 reads so far
2011-05-20 07:45:46,032 - INFO - Processed 27900000 reads so far
2011-05-20 07:45:57,508 - INFO - Processed 28000000 reads so far
2011-05-20 07:46:08,616 - INFO - Processed 28100000 reads so far
2011-05-20 07:46:22,784 - INFO - Processed 28200000 reads so far
2011-05-20 07:46:35,972 - INFO - Processed 28300000 reads so far
2011-05-20 07:46:42,969 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:102990173-123010173
2011-05-20 07:46:47,137 - INFO - Processed 28400000 reads so far
2011-05-20 07:46:57,517 - INFO - Processed 28500000 reads so far
2011-05-20 07:47:07,210 - INFO - Processed 28600000 reads so far
2011-05-20 07:47:15,308 - INFO - Processed 28700000 reads so far
2011-05-20 07:47:24,372 - INFO - Processed 28800000 reads so far
2011-05-20 07:47:34,717 - INFO - Processed 28900000 reads so far
2011-05-20 07:47:42,936 - INFO - Processed 29000000 reads so far
2011-05-20 07:47:52,363 - INFO - Processed 29100000 reads so far
2011-05-20 07:48:02,454 - INFO - Processed 29200000 reads so far
2011-05-20 07:48:14,628 - INFO - Processed 29300000 reads so far
2011-05-20 07:48:21,085 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13_random:0-20010000
2011-05-20 07:48:22,245 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:2990005-23010005
2011-05-20 07:48:23,404 - INFO - Processed 29400000 reads so far
2011-05-20 07:48:33,669 - INFO - Processed 29500000 reads so far
2011-05-20 07:48:42,982 - INFO - Processed 29600000 reads so far
2011-05-20 07:48:52,436 - INFO - Processed 29700000 reads so far
2011-05-20 07:49:02,699 - INFO - Processed 29800000 reads so far
2011-05-20 07:49:12,140 - INFO - Processed 29900000 reads so far
2011-05-20 07:49:23,121 - INFO - Processed 30000000 reads so far
2011-05-20 07:49:32,820 - INFO - Processed 30100000 reads so far
2011-05-20 07:49:41,240 - INFO - Processed 30200000 reads so far
2011-05-20 07:49:50,213 - INFO - Processed 30300000 reads so far
2011-05-20 07:49:59,630 - INFO - Processed 30400000 reads so far
2011-05-20 07:50:09,296 - INFO - Processed 30500000 reads so far
2011-05-20 07:50:17,461 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:22990012-43010012
2011-05-20 07:50:20,338 - INFO - Processed 30600000 reads so far
2011-05-20 07:50:30,145 - INFO - Processed 30700000 reads so far
2011-05-20 07:50:39,260 - INFO - Processed 30800000 reads so far
2011-05-20 07:50:49,358 - INFO - Processed 30900000 reads so far
2011-05-20 07:50:59,625 - INFO - Processed 31000000 reads so far
2011-05-20 07:51:10,921 - INFO - Processed 31100000 reads so far
2011-05-20 07:51:18,979 - INFO - Processed 31200000 reads so far
2011-05-20 07:51:27,557 - INFO - Processed 31300000 reads so far
2011-05-20 07:51:36,647 - INFO - Processed 31400000 reads so far
2011-05-20 07:51:44,700 - INFO - Processed 31500000 reads so far
2011-05-20 07:51:52,535 - INFO - Processed 31600000 reads so far
2011-05-20 07:52:00,682 - INFO - Processed 31700000 reads so far
2011-05-20 07:52:09,586 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:42990140-63010140
2011-05-20 07:52:09,762 - INFO - Processed 31800000 reads so far
2011-05-20 07:52:19,700 - INFO - Processed 31900000 reads so far
2011-05-20 07:52:29,848 - INFO - Processed 32000000 reads so far
2011-05-20 07:52:41,713 - INFO - Processed 32100000 reads so far
2011-05-20 07:52:49,460 - INFO - Processed 32200000 reads so far
2011-05-20 07:52:56,153 - INFO - Processed 32300000 reads so far
2011-05-20 07:53:04,933 - INFO - Processed 32400000 reads so far
2011-05-20 07:53:13,060 - INFO - Processed 32500000 reads so far
2011-05-20 07:53:21,274 - INFO - Processed 32600000 reads so far
2011-05-20 07:53:28,872 - INFO - Processed 32700000 reads so far
2011-05-20 07:53:36,500 - INFO - Processed 32800000 reads so far
2011-05-20 07:53:46,857 - INFO - Processed 32900000 reads so far
2011-05-20 07:53:57,130 - INFO - Processed 33000000 reads so far
2011-05-20 07:54:04,727 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:62990144-83010144
2011-05-20 07:54:06,870 - INFO - Processed 33100000 reads so far
2011-05-20 07:54:15,884 - INFO - Processed 33200000 reads so far
2011-05-20 07:54:24,474 - INFO - Processed 33300000 reads so far
2011-05-20 07:54:32,670 - INFO - Processed 33400000 reads so far
2011-05-20 07:54:41,491 - INFO - Processed 33500000 reads so far
2011-05-20 07:54:50,854 - INFO - Processed 33600000 reads so far
2011-05-20 07:55:01,573 - INFO - Processed 33700000 reads so far
2011-05-20 07:55:11,980 - INFO - Processed 33800000 reads so far
2011-05-20 07:55:22,800 - INFO - Processed 33900000 reads so far
2011-05-20 07:55:35,573 - INFO - Processed 34000000 reads so far
2011-05-20 07:55:46,939 - INFO - Processed 34100000 reads so far
2011-05-20 07:55:57,681 - INFO - Processed 34200000 reads so far
2011-05-20 07:56:08,875 - INFO - Processed 34300000 reads so far
2011-05-20 07:56:12,474 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:82990161-103010161
2011-05-20 07:56:19,490 - INFO - Processed 34400000 reads so far
2011-05-20 07:56:30,031 - INFO - Processed 34500000 reads so far
2011-05-20 07:56:42,027 - INFO - Processed 34600000 reads so far
2011-05-20 07:56:51,178 - INFO - Processed 34700000 reads so far
2011-05-20 07:57:00,909 - INFO - Processed 34800000 reads so far
2011-05-20 07:57:09,201 - INFO - Processed 34900000 reads so far
2011-05-20 07:57:18,292 - INFO - Processed 35000000 reads so far
2011-05-20 07:57:25,998 - INFO - Processed 35100000 reads so far
2011-05-20 07:57:36,840 - INFO - Processed 35200000 reads so far
2011-05-20 07:57:46,518 - INFO - Processed 35300000 reads so far
2011-05-20 07:57:52,641 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:102990168-123010168
2011-05-20 07:57:54,666 - INFO - Processed 35400000 reads so far
2011-05-20 07:58:01,954 - INFO - Processed 35500000 reads so far
2011-05-20 07:58:10,552 - INFO - Processed 35600000 reads so far
2011-05-20 07:58:18,583 - INFO - Processed 35700000 reads so far
2011-05-20 07:58:28,127 - INFO - Processed 35800000 reads so far
2011-05-20 07:58:38,974 - INFO - Processed 35900000 reads so far
2011-05-20 07:58:47,875 - INFO - Processed 36000000 reads so far
2011-05-20 07:58:54,637 - INFO - Processed 36100000 reads so far
2011-05-20 07:59:04,145 - INFO - Processed 36200000 reads so far
2011-05-20 07:59:13,003 - INFO - Processed 36300000 reads so far
2011-05-20 07:59:24,867 - INFO - Processed 36400000 reads so far
2011-05-20 07:59:31,789 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:122990175-143010175
2011-05-20 07:59:31,857 - INFO - Processed 36500000 reads so far
2011-05-20 07:59:38,575 - INFO - Processed 36600000 reads so far
2011-05-20 07:59:40,104 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:2990015-23010015
2011-05-20 07:59:46,304 - INFO - Processed 36700000 reads so far
2011-05-20 07:59:53,013 - INFO - Processed 36800000 reads so far
2011-05-20 08:00:00,558 - INFO - Processed 36900000 reads so far
2011-05-20 08:00:07,907 - INFO - Processed 37000000 reads so far
2011-05-20 08:00:15,280 - INFO - Processed 37100000 reads so far
2011-05-20 08:00:24,336 - INFO - Processed 37200000 reads so far
2011-05-20 08:00:31,587 - INFO - Processed 37300000 reads so far
2011-05-20 08:00:39,646 - INFO - Processed 37400000 reads so far
2011-05-20 08:00:49,622 - INFO - Processed 37500000 reads so far
2011-05-20 08:01:00,297 - INFO - Processed 37600000 reads so far
2011-05-20 08:01:07,671 - INFO - Processed 37700000 reads so far
2011-05-20 08:01:10,450 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:22990029-43010029
2011-05-20 08:01:15,748 - INFO - Processed 37800000 reads so far
2011-05-20 08:01:24,801 - INFO - Processed 37900000 reads so far
2011-05-20 08:01:35,740 - INFO - Processed 38000000 reads so far
2011-05-20 08:01:46,996 - INFO - Processed 38100000 reads so far
2011-05-20 08:01:58,122 - INFO - Processed 38200000 reads so far
2011-05-20 08:02:09,011 - INFO - Processed 38300000 reads so far
2011-05-20 08:02:17,560 - INFO - Processed 38400000 reads so far
2011-05-20 08:02:24,338 - INFO - Processed 38500000 reads so far
2011-05-20 08:02:35,156 - INFO - Processed 38600000 reads so far
2011-05-20 08:02:48,910 - INFO - Processed 38700000 reads so far
2011-05-20 08:02:58,810 - INFO - Processed 38800000 reads so far
2011-05-20 08:03:06,671 - INFO - Processed 38900000 reads so far
2011-05-20 08:03:08,960 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:42990067-63010067
2011-05-20 08:03:15,457 - INFO - Processed 39000000 reads so far
2011-05-20 08:03:26,292 - INFO - Processed 39100000 reads so far
2011-05-20 08:03:34,007 - INFO - Processed 39200000 reads so far
2011-05-20 08:03:44,684 - INFO - Processed 39300000 reads so far
2011-05-20 08:03:55,848 - INFO - Processed 39400000 reads so far
2011-05-20 08:04:08,418 - INFO - Processed 39500000 reads so far
2011-05-20 08:04:18,049 - INFO - Processed 39600000 reads so far
2011-05-20 08:04:28,180 - INFO - Processed 39700000 reads so far
2011-05-20 08:04:41,031 - INFO - Processed 39800000 reads so far
2011-05-20 08:04:51,754 - INFO - Processed 39900000 reads so far
2011-05-20 08:05:01,574 - INFO - Processed 40000000 reads so far
2011-05-20 08:05:11,689 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:62990071-83010071
2011-05-20 08:05:14,044 - INFO - Processed 40100000 reads so far
2011-05-20 08:05:27,390 - INFO - Processed 40200000 reads so far
2011-05-20 08:05:37,767 - INFO - Processed 40300000 reads so far
2011-05-20 08:05:47,963 - INFO - Processed 40400000 reads so far
2011-05-20 08:05:58,541 - INFO - Processed 40500000 reads so far
2011-05-20 08:06:09,477 - INFO - Processed 40600000 reads so far
2011-05-20 08:06:20,391 - INFO - Processed 40700000 reads so far
2011-05-20 08:06:31,069 - INFO - Processed 40800000 reads so far
2011-05-20 08:06:41,584 - INFO - Processed 40900000 reads so far
2011-05-20 08:06:50,087 - INFO - Processed 41000000 reads so far
2011-05-20 08:06:57,993 - INFO - Processed 41100000 reads so far
2011-05-20 08:07:08,447 - INFO - Processed 41200000 reads so far
2011-05-20 08:07:16,599 - INFO - Processed 41300000 reads so far
2011-05-20 08:07:24,330 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:82990101-103010101
2011-05-20 08:07:25,164 - INFO - Processed 41400000 reads so far
2011-05-20 08:07:36,355 - INFO - Processed 41500000 reads so far
2011-05-20 08:07:47,138 - INFO - Processed 41600000 reads so far
2011-05-20 08:07:57,979 - INFO - Processed 41700000 reads so far
2011-05-20 08:08:07,314 - INFO - Processed 41800000 reads so far
2011-05-20 08:08:15,848 - INFO - Processed 41900000 reads so far
2011-05-20 08:08:24,571 - INFO - Processed 42000000 reads so far
2011-05-20 08:08:34,948 - INFO - Processed 42100000 reads so far
2011-05-20 08:08:44,443 - INFO - Processed 42200000 reads so far
2011-05-20 08:08:52,858 - INFO - Processed 42300000 reads so far
2011-05-20 08:09:03,060 - INFO - Processed 42400000 reads so far
2011-05-20 08:09:13,176 - INFO - Processed 42500000 reads so far
2011-05-20 08:09:23,153 - INFO - Processed 42600000 reads so far
2011-05-20 08:09:37,439 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:102990118-123010118
2011-05-20 08:09:39,376 - INFO - Processed 42700000 reads so far
2011-05-20 08:09:40,595 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:2990017-23010017
2011-05-20 08:09:48,230 - INFO - Processed 42800000 reads so far
2011-05-20 08:10:01,762 - INFO - Processed 42900000 reads so far
2011-05-20 08:10:13,052 - INFO - Processed 43000000 reads so far
2011-05-20 08:10:23,018 - INFO - Processed 43100000 reads so far
2011-05-20 08:10:32,654 - INFO - Processed 43200000 reads so far
2011-05-20 08:10:41,891 - INFO - Processed 43300000 reads so far
2011-05-20 08:10:51,092 - INFO - Processed 43400000 reads so far
2011-05-20 08:11:04,495 - INFO - Processed 43500000 reads so far
2011-05-20 08:11:13,638 - INFO - Processed 43600000 reads so far
2011-05-20 08:11:22,058 - INFO - Processed 43700000 reads so far
2011-05-20 08:11:32,803 - INFO - Processed 43800000 reads so far
2011-05-20 08:11:41,430 - INFO - Processed 43900000 reads so far
2011-05-20 08:11:50,567 - INFO - Processed 44000000 reads so far
2011-05-20 08:11:53,800 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:22990020-43010020
2011-05-20 08:11:59,317 - INFO - Processed 44100000 reads so far
2011-05-20 08:12:07,697 - INFO - Processed 44200000 reads so far
2011-05-20 08:12:15,978 - INFO - Processed 44300000 reads so far
2011-05-20 08:12:24,408 - INFO - Processed 44400000 reads so far
2011-05-20 08:12:32,690 - INFO - Processed 44500000 reads so far
2011-05-20 08:12:40,837 - INFO - Processed 44600000 reads so far
2011-05-20 08:12:49,123 - INFO - Processed 44700000 reads so far
2011-05-20 08:12:57,282 - INFO - Processed 44800000 reads so far
2011-05-20 08:13:06,072 - INFO - Processed 44900000 reads so far
2011-05-20 08:13:15,620 - INFO - Processed 45000000 reads so far
2011-05-20 08:13:24,128 - INFO - Processed 45100000 reads so far
2011-05-20 08:13:32,931 - INFO - Processed 45200000 reads so far
2011-05-20 08:13:37,694 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:42990024-63010024
2011-05-20 08:13:42,489 - INFO - Processed 45300000 reads so far
2011-05-20 08:13:50,847 - INFO - Processed 45400000 reads so far
2011-05-20 08:13:59,498 - INFO - Processed 45500000 reads so far
2011-05-20 08:14:07,605 - INFO - Processed 45600000 reads so far
2011-05-20 08:14:16,227 - INFO - Processed 45700000 reads so far
2011-05-20 08:14:25,959 - INFO - Processed 45800000 reads so far
2011-05-20 08:14:34,300 - INFO - Processed 45900000 reads so far
2011-05-20 08:14:42,493 - INFO - Processed 46000000 reads so far
2011-05-20 08:14:50,857 - INFO - Processed 46100000 reads so far
2011-05-20 08:14:59,644 - INFO - Processed 46200000 reads so far
2011-05-20 08:15:09,495 - INFO - Processed 46300000 reads so far
2011-05-20 08:15:15,864 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:62990029-83010029
2011-05-20 08:15:18,202 - INFO - Processed 46400000 reads so far
2011-05-20 08:15:28,373 - INFO - Processed 46500000 reads so far
2011-05-20 08:15:36,632 - INFO - Processed 46600000 reads so far
2011-05-20 08:15:45,957 - INFO - Processed 46700000 reads so far
2011-05-20 08:15:54,752 - INFO - Processed 46800000 reads so far
2011-05-20 08:16:03,435 - INFO - Processed 46900000 reads so far
2011-05-20 08:16:12,447 - INFO - Processed 47000000 reads so far
2011-05-20 08:16:21,145 - INFO - Processed 47100000 reads so far
2011-05-20 08:16:33,755 - INFO - Processed 47200000 reads so far
2011-05-20 08:16:43,988 - INFO - Processed 47300000 reads so far
2011-05-20 08:16:54,561 - INFO - Processed 47400000 reads so far
2011-05-20 08:16:58,386 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:82990060-103010060
2011-05-20 08:17:05,430 - INFO - Processed 47500000 reads so far
2011-05-20 08:17:17,883 - INFO - Processed 47600000 reads so far
2011-05-20 08:17:26,846 - INFO - Processed 47700000 reads so far
2011-05-20 08:17:36,423 - INFO - Processed 47800000 reads so far
2011-05-20 08:17:44,755 - INFO - Processed 47900000 reads so far
2011-05-20 08:17:53,409 - INFO - Processed 48000000 reads so far
2011-05-20 08:18:01,729 - INFO - Processed 48100000 reads so far
2011-05-20 08:18:10,638 - INFO - Processed 48200000 reads so far
2011-05-20 08:18:19,441 - INFO - Processed 48300000 reads so far
2011-05-20 08:18:27,739 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16_random:0-20010115
2011-05-20 08:18:27,762 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:2989978-23009978
2011-05-20 08:18:28,550 - INFO - Processed 48400000 reads so far
2011-05-20 08:18:39,511 - INFO - Processed 48500000 reads so far
2011-05-20 08:18:48,802 - INFO - Processed 48600000 reads so far
2011-05-20 08:18:58,018 - INFO - Processed 48700000 reads so far
2011-05-20 08:19:07,510 - INFO - Processed 48800000 reads so far
2011-05-20 08:19:15,522 - INFO - Processed 48900000 reads so far
2011-05-20 08:19:24,444 - INFO - Processed 49000000 reads so far
2011-05-20 08:19:34,036 - INFO - Processed 49100000 reads so far
2011-05-20 08:19:41,499 - INFO - Processed 49200000 reads so far
2011-05-20 08:19:48,884 - INFO - Processed 49300000 reads so far
2011-05-20 08:19:57,983 - INFO - Processed 49400000 reads so far
2011-05-20 08:20:06,636 - INFO - Processed 49500000 reads so far
2011-05-20 08:20:14,147 - INFO - Processed 49600000 reads so far
2011-05-20 08:20:24,209 - INFO - Processed 49700000 reads so far
2011-05-20 08:20:30,043 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:22990075-43010075
2011-05-20 08:20:32,714 - INFO - Processed 49800000 reads so far
2011-05-20 08:20:41,161 - INFO - Processed 49900000 reads so far
2011-05-20 08:20:50,979 - INFO - Processed 50000000 reads so far
2011-05-20 08:21:00,109 - INFO - Processed 50100000 reads so far
2011-05-20 08:21:08,609 - INFO - Processed 50200000 reads so far
2011-05-20 08:21:17,541 - INFO - Processed 50300000 reads so far
2011-05-20 08:21:25,743 - INFO - Processed 50400000 reads so far
2011-05-20 08:21:34,899 - INFO - Processed 50500000 reads so far
2011-05-20 08:21:44,019 - INFO - Processed 50600000 reads so far
2011-05-20 08:21:53,416 - INFO - Processed 50700000 reads so far
2011-05-20 08:22:03,056 - INFO - Processed 50800000 reads so far
2011-05-20 08:22:11,545 - INFO - Processed 50900000 reads so far
2011-05-20 08:22:19,331 - INFO - Processed 51000000 reads so far
2011-05-20 08:22:28,473 - INFO - Processed 51100000 reads so far
2011-05-20 08:22:29,532 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:42990081-63010081
2011-05-20 08:22:36,935 - INFO - Processed 51200000 reads so far
2011-05-20 08:22:45,334 - INFO - Processed 51300000 reads so far
2011-05-20 08:22:53,836 - INFO - Processed 51400000 reads so far
2011-05-20 08:23:02,602 - INFO - Processed 51500000 reads so far
2011-05-20 08:23:12,108 - INFO - Processed 51600000 reads so far
2011-05-20 08:23:23,436 - INFO - Processed 51700000 reads so far
2011-05-20 08:23:31,929 - INFO - Processed 51800000 reads so far
2011-05-20 08:23:40,563 - INFO - Processed 51900000 reads so far
2011-05-20 08:23:48,998 - INFO - Processed 52000000 reads so far
2011-05-20 08:23:57,482 - INFO - Processed 52100000 reads so far
2011-05-20 08:24:06,457 - INFO - Processed 52200000 reads so far
2011-05-20 08:24:14,147 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:62990092-83010092
2011-05-20 08:24:14,403 - INFO - Processed 52300000 reads so far
2011-05-20 08:24:23,690 - INFO - Processed 52400000 reads so far
2011-05-20 08:24:32,427 - INFO - Processed 52500000 reads so far
2011-05-20 08:24:42,272 - INFO - Processed 52600000 reads so far
2011-05-20 08:24:51,134 - INFO - Processed 52700000 reads so far
2011-05-20 08:25:00,612 - INFO - Processed 52800000 reads so far
2011-05-20 08:25:11,508 - INFO - Processed 52900000 reads so far
2011-05-20 08:25:19,999 - INFO - Processed 53000000 reads so far
2011-05-20 08:25:28,486 - INFO - Processed 53100000 reads so far
2011-05-20 08:25:37,703 - INFO - Processed 53200000 reads so far
2011-05-20 08:25:46,595 - INFO - Processed 53300000 reads so far
2011-05-20 08:25:55,767 - INFO - Processed 53400000 reads so far
2011-05-20 08:26:04,730 - INFO - Processed 53500000 reads so far
2011-05-20 08:26:04,916 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:82990167-103010167
2011-05-20 08:26:12,829 - INFO - Processed 53600000 reads so far
2011-05-20 08:26:22,198 - INFO - Processed 53700000 reads so far
2011-05-20 08:26:30,697 - INFO - Processed 53800000 reads so far
2011-05-20 08:26:39,890 - INFO - Processed 53900000 reads so far
2011-05-20 08:26:48,531 - INFO - Processed 54000000 reads so far
2011-05-20 08:26:57,078 - INFO - Processed 54100000 reads so far
2011-05-20 08:27:05,652 - INFO - Processed 54200000 reads so far
2011-05-20 08:27:07,996 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17_random:0-20010045
2011-05-20 08:27:09,530 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:2990010-23010010
2011-05-20 08:27:13,270 - INFO - Processed 54300000 reads so far
2011-05-20 08:27:22,976 - INFO - Processed 54400000 reads so far
2011-05-20 08:27:31,171 - INFO - Processed 54500000 reads so far
2011-05-20 08:27:39,476 - INFO - Processed 54600000 reads so far
2011-05-20 08:27:47,609 - INFO - Processed 54700000 reads so far
2011-05-20 08:27:57,989 - INFO - Processed 54800000 reads so far
2011-05-20 08:28:08,109 - INFO - Processed 54900000 reads so far
2011-05-20 08:28:16,994 - INFO - Processed 55000000 reads so far
2011-05-20 08:28:24,854 - INFO - Processed 55100000 reads so far
2011-05-20 08:28:33,296 - INFO - Processed 55200000 reads so far
2011-05-20 08:28:42,725 - INFO - Processed 55300000 reads so far
2011-05-20 08:28:50,381 - INFO - Processed 55400000 reads so far
2011-05-20 08:28:57,118 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:22990013-43010013
2011-05-20 08:28:58,204 - INFO - Processed 55500000 reads so far
2011-05-20 08:29:06,053 - INFO - Processed 55600000 reads so far
2011-05-20 08:29:13,971 - INFO - Processed 55700000 reads so far
2011-05-20 08:29:22,435 - INFO - Processed 55800000 reads so far
2011-05-20 08:29:29,185 - INFO - Processed 55900000 reads so far
2011-05-20 08:29:38,684 - INFO - Processed 56000000 reads so far
2011-05-20 08:29:46,056 - INFO - Processed 56100000 reads so far
2011-05-20 08:29:54,271 - INFO - Processed 56200000 reads so far
2011-05-20 08:30:02,729 - INFO - Processed 56300000 reads so far
2011-05-20 08:30:10,048 - INFO - Processed 56400000 reads so far
2011-05-20 08:30:17,719 - INFO - Processed 56500000 reads so far
2011-05-20 08:30:24,950 - INFO - Processed 56600000 reads so far
2011-05-20 08:30:33,098 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:42990039-63010039
2011-05-20 08:30:33,257 - INFO - Processed 56700000 reads so far
2011-05-20 08:30:42,296 - INFO - Processed 56800000 reads so far
2011-05-20 08:30:55,230 - INFO - Processed 56900000 reads so far
2011-05-20 08:31:06,292 - INFO - Processed 57000000 reads so far
2011-05-20 08:31:17,426 - INFO - Processed 57100000 reads so far
2011-05-20 08:31:31,222 - INFO - Processed 57200000 reads so far
2011-05-20 08:31:40,143 - INFO - Processed 57300000 reads so far
2011-05-20 08:31:49,486 - INFO - Processed 57400000 reads so far
2011-05-20 08:31:59,421 - INFO - Processed 57500000 reads so far
2011-05-20 08:32:07,690 - INFO - Processed 57600000 reads so far
2011-05-20 08:32:16,907 - INFO - Processed 57700000 reads so far
2011-05-20 08:32:25,441 - INFO - Processed 57800000 reads so far
2011-05-20 08:32:33,314 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:62990047-83010047
2011-05-20 08:32:36,564 - INFO - Processed 57900000 reads so far
2011-05-20 08:32:46,151 - INFO - Processed 58000000 reads so far
2011-05-20 08:32:55,202 - INFO - Processed 58100000 reads so far
2011-05-20 08:33:02,742 - INFO - Processed 58200000 reads so far
2011-05-20 08:33:14,038 - INFO - Processed 58300000 reads so far
2011-05-20 08:33:22,091 - INFO - Processed 58400000 reads so far
2011-05-20 08:33:31,310 - INFO - Processed 58500000 reads so far
2011-05-20 08:33:40,028 - INFO - Processed 58600000 reads so far
2011-05-20 08:33:48,814 - INFO - Processed 58700000 reads so far
2011-05-20 08:33:57,601 - INFO - Processed 58800000 reads so far
2011-05-20 08:34:06,631 - INFO - Processed 58900000 reads so far
2011-05-20 08:34:15,166 - INFO - Processed 59000000 reads so far
2011-05-20 08:34:23,546 - INFO - Processed 59100000 reads so far
2011-05-20 08:34:25,664 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:82990055-103010055
2011-05-20 08:34:32,676 - INFO - Processed 59200000 reads so far
2011-05-20 08:34:40,818 - INFO - Processed 59300000 reads so far
2011-05-20 08:34:49,849 - INFO - Processed 59400000 reads so far
2011-05-20 08:34:58,799 - INFO - Processed 59500000 reads so far
2011-05-20 08:35:05,446 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:2990039-23010039
2011-05-20 08:35:08,252 - INFO - Processed 59600000 reads so far
2011-05-20 08:35:17,523 - INFO - Processed 59700000 reads so far
2011-05-20 08:35:27,303 - INFO - Processed 59800000 reads so far
2011-05-20 08:35:37,074 - INFO - Processed 59900000 reads so far
2011-05-20 08:35:46,076 - INFO - Processed 60000000 reads so far
2011-05-20 08:35:56,111 - INFO - Processed 60100000 reads so far
2011-05-20 08:36:05,739 - INFO - Processed 60200000 reads so far
2011-05-20 08:36:14,828 - INFO - Processed 60300000 reads so far
2011-05-20 08:36:23,569 - INFO - Processed 60400000 reads so far
2011-05-20 08:36:33,775 - INFO - Processed 60500000 reads so far
2011-05-20 08:36:42,600 - INFO - Processed 60600000 reads so far
2011-05-20 08:36:53,611 - INFO - Processed 60700000 reads so far
2011-05-20 08:37:01,376 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:22990042-43010042
2011-05-20 08:37:04,497 - INFO - Processed 60800000 reads so far
2011-05-20 08:37:15,508 - INFO - Processed 60900000 reads so far
2011-05-20 08:37:26,100 - INFO - Processed 61000000 reads so far
2011-05-20 08:37:36,650 - INFO - Processed 61100000 reads so far
2011-05-20 08:37:47,306 - INFO - Processed 61200000 reads so far
2011-05-20 08:37:58,614 - INFO - Processed 61300000 reads so far
2011-05-20 08:38:09,400 - INFO - Processed 61400000 reads so far
2011-05-20 08:38:23,042 - INFO - Processed 61500000 reads so far
2011-05-20 08:38:34,060 - INFO - Processed 61600000 reads so far
2011-05-20 08:38:44,852 - INFO - Processed 61700000 reads so far
2011-05-20 08:38:56,948 - INFO - Processed 61800000 reads so far
2011-05-20 08:39:08,349 - INFO - Processed 61900000 reads so far
2011-05-20 08:39:17,367 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:42990060-63010060
2011-05-20 08:39:19,274 - INFO - Processed 62000000 reads so far
2011-05-20 08:39:32,900 - INFO - Processed 62100000 reads so far
2011-05-20 08:39:44,039 - INFO - Processed 62200000 reads so far
2011-05-20 08:39:53,802 - INFO - Processed 62300000 reads so far
2011-05-20 08:40:03,953 - INFO - Processed 62400000 reads so far
2011-05-20 08:40:15,561 - INFO - Processed 62500000 reads so far
2011-05-20 08:40:28,099 - INFO - Processed 62600000 reads so far
2011-05-20 08:40:39,268 - INFO - Processed 62700000 reads so far
2011-05-20 08:40:53,793 - INFO - Processed 62800000 reads so far
2011-05-20 08:41:05,241 - INFO - Processed 62900000 reads so far
2011-05-20 08:41:17,725 - INFO - Processed 63000000 reads so far
2011-05-20 08:41:28,354 - INFO - Processed 63100000 reads so far
2011-05-20 08:41:32,189 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:2989997-23009997
2011-05-20 08:41:39,323 - INFO - Processed 63200000 reads so far
2011-05-20 08:41:51,857 - INFO - Processed 63300000 reads so far
2011-05-20 08:42:02,698 - INFO - Processed 63400000 reads so far
2011-05-20 08:42:13,723 - INFO - Processed 63500000 reads so far
2011-05-20 08:42:25,473 - INFO - Processed 63600000 reads so far
2011-05-20 08:42:32,943 - INFO - Processed 63700000 reads so far
2011-05-20 08:42:41,073 - INFO - Processed 63800000 reads so far
2011-05-20 08:42:49,479 - INFO - Processed 63900000 reads so far
2011-05-20 08:42:57,315 - INFO - Processed 64000000 reads so far
2011-05-20 08:43:06,813 - INFO - Processed 64100000 reads so far
2011-05-20 08:43:16,496 - INFO - Processed 64200000 reads so far
2011-05-20 08:43:24,584 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:22990011-43010011
2011-05-20 08:43:25,321 - INFO - Processed 64300000 reads so far
2011-05-20 08:43:33,488 - INFO - Processed 64400000 reads so far
2011-05-20 08:43:42,464 - INFO - Processed 64500000 reads so far
2011-05-20 08:43:53,686 - INFO - Processed 64600000 reads so far
2011-05-20 08:44:02,412 - INFO - Processed 64700000 reads so far
2011-05-20 08:44:18,348 - INFO - Processed 64800000 reads so far
2011-05-20 08:44:29,078 - INFO - Processed 64900000 reads so far
2011-05-20 08:44:40,017 - INFO - Processed 65000000 reads so far
2011-05-20 08:44:49,236 - INFO - Processed 65100000 reads so far
2011-05-20 08:44:59,534 - INFO - Processed 65200000 reads so far
2011-05-20 08:45:10,079 - INFO - Processed 65300000 reads so far
2011-05-20 08:45:19,650 - INFO - Processed 65400000 reads so far
2011-05-20 08:45:28,574 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:42990024-63010024
2011-05-20 08:45:29,169 - INFO - Processed 65500000 reads so far
2011-05-20 08:45:37,145 - INFO - Processed 65600000 reads so far
2011-05-20 08:45:47,998 - INFO - Processed 65700000 reads so far
2011-05-20 08:45:57,607 - INFO - Processed 65800000 reads so far
2011-05-20 08:46:06,033 - INFO - Processed 65900000 reads so far
2011-05-20 08:46:15,237 - INFO - Processed 66000000 reads so far
2011-05-20 08:46:26,793 - INFO - Processed 66100000 reads so far
2011-05-20 08:46:39,273 - INFO - Processed 66200000 reads so far
2011-05-20 08:46:47,421 - INFO - Processed 66300000 reads so far
2011-05-20 08:46:56,000 - INFO - Processed 66400000 reads so far
2011-05-20 08:47:06,423 - INFO - Processed 66500000 reads so far
2011-05-20 08:47:14,793 - INFO - Processed 66600000 reads so far
2011-05-20 08:47:20,413 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:62990038-83010038
2011-05-20 08:47:23,796 - INFO - Processed 66700000 reads so far
2011-05-20 08:47:32,778 - INFO - Processed 66800000 reads so far
2011-05-20 08:47:41,687 - INFO - Processed 66900000 reads so far
2011-05-20 08:47:51,638 - INFO - Processed 67000000 reads so far
2011-05-20 08:48:03,607 - INFO - Processed 67100000 reads so far
2011-05-20 08:48:15,556 - INFO - Processed 67200000 reads so far
2011-05-20 08:48:27,280 - INFO - Processed 67300000 reads so far
2011-05-20 08:48:37,629 - INFO - Processed 67400000 reads so far
2011-05-20 08:48:47,390 - INFO - Processed 67500000 reads so far
2011-05-20 08:48:56,969 - INFO - Processed 67600000 reads so far
2011-05-20 08:49:09,177 - INFO - Processed 67700000 reads so far
2011-05-20 08:49:17,750 - INFO - Processed 67800000 reads so far
2011-05-20 08:49:21,340 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:82990050-103010050
2011-05-20 08:49:25,991 - INFO - Processed 67900000 reads so far
2011-05-20 08:49:34,594 - INFO - Processed 68000000 reads so far
2011-05-20 08:49:44,082 - INFO - Processed 68100000 reads so far
2011-05-20 08:49:54,863 - INFO - Processed 68200000 reads so far
2011-05-20 08:50:03,838 - INFO - Processed 68300000 reads so far
2011-05-20 08:50:13,008 - INFO - Processed 68400000 reads so far
2011-05-20 08:50:24,144 - INFO - Processed 68500000 reads so far
2011-05-20 08:50:36,988 - INFO - Processed 68600000 reads so far
2011-05-20 08:50:45,888 - INFO - Processed 68700000 reads so far
2011-05-20 08:50:54,262 - INFO - Processed 68800000 reads so far
2011-05-20 08:51:02,809 - INFO - Processed 68900000 reads so far
2011-05-20 08:51:11,476 - INFO - Processed 69000000 reads so far
2011-05-20 08:51:18,726 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:102990136-123010136
2011-05-20 08:51:22,276 - INFO - Processed 69100000 reads so far
2011-05-20 08:51:32,488 - INFO - Processed 69200000 reads so far
2011-05-20 08:51:42,703 - INFO - Processed 69300000 reads so far
2011-05-20 08:51:50,504 - INFO - Processed 69400000 reads so far
2011-05-20 08:52:00,356 - INFO - Processed 69500000 reads so far
2011-05-20 08:52:09,940 - INFO - Processed 69600000 reads so far
2011-05-20 08:52:18,027 - INFO - Processed 69700000 reads so far
2011-05-20 08:52:26,138 - INFO - Processed 69800000 reads so far
2011-05-20 08:52:35,576 - INFO - Processed 69900000 reads so far
2011-05-20 08:52:43,890 - INFO - Processed 70000000 reads so far
2011-05-20 08:52:52,397 - INFO - Processed 70100000 reads so far
2011-05-20 08:53:01,460 - INFO - Processed 70200000 reads so far
2011-05-20 08:53:02,142 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:122990144-143010144
2011-05-20 08:53:10,244 - INFO - Processed 70300000 reads so far
2011-05-20 08:53:18,706 - INFO - Processed 70400000 reads so far
2011-05-20 08:53:26,362 - INFO - Processed 70500000 reads so far
2011-05-20 08:53:34,460 - INFO - Processed 70600000 reads so far
2011-05-20 08:53:42,866 - INFO - Processed 70700000 reads so far
2011-05-20 08:53:53,505 - INFO - Processed 70800000 reads so far
2011-05-20 08:54:01,914 - INFO - Processed 70900000 reads so far
2011-05-20 08:54:11,116 - INFO - Processed 71000000 reads so far
2011-05-20 08:54:19,691 - INFO - Processed 71100000 reads so far
2011-05-20 08:54:28,340 - INFO - Processed 71200000 reads so far
2011-05-20 08:54:36,572 - INFO - Processed 71300000 reads so far
2011-05-20 08:54:44,700 - INFO - Processed 71400000 reads so far
2011-05-20 08:54:48,562 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:142990205-163010205
2011-05-20 08:54:54,061 - INFO - Processed 71500000 reads so far
2011-05-20 08:55:02,913 - INFO - Processed 71600000 reads so far
2011-05-20 08:55:11,822 - INFO - Processed 71700000 reads so far
2011-05-20 08:55:20,648 - INFO - Processed 71800000 reads so far
2011-05-20 08:55:29,634 - INFO - Processed 71900000 reads so far
2011-05-20 08:55:40,472 - INFO - Processed 72000000 reads so far
2011-05-20 08:55:51,246 - INFO - Processed 72100000 reads so far
2011-05-20 08:56:01,856 - INFO - Processed 72200000 reads so far
2011-05-20 08:56:13,539 - INFO - Processed 72300000 reads so far
2011-05-20 08:56:21,804 - INFO - Processed 72400000 reads so far
2011-05-20 08:56:30,578 - INFO - Processed 72500000 reads so far
2011-05-20 08:56:36,988 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:162990237-183010237
2011-05-20 08:56:38,999 - INFO - Processed 72600000 reads so far
2011-05-20 08:56:48,944 - INFO - Processed 72700000 reads so far
2011-05-20 08:56:59,437 - INFO - Processed 72800000 reads so far
2011-05-20 08:57:09,090 - INFO - Processed 72900000 reads so far
2011-05-20 08:57:17,269 - INFO - Processed 73000000 reads so far
2011-05-20 08:57:28,545 - INFO - Processed 73100000 reads so far
2011-05-20 08:57:37,783 - INFO - Processed 73200000 reads so far
2011-05-20 08:57:48,558 - INFO - Processed 73300000 reads so far
2011-05-20 08:57:57,063 - INFO - Processed 73400000 reads so far
2011-05-20 08:58:05,151 - INFO - Processed 73500000 reads so far
2011-05-20 08:58:14,245 - INFO - Processed 73600000 reads so far
2011-05-20 08:58:25,061 - INFO - Processed 73700000 reads so far
2011-05-20 08:58:35,785 - INFO - Processed 73800000 reads so far
2011-05-20 08:58:37,596 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:182990249-203010249
2011-05-20 08:58:47,995 - INFO - Processed 73900000 reads so far
2011-05-20 08:58:59,126 - INFO - Processed 74000000 reads so far
2011-05-20 08:59:10,272 - INFO - Processed 74100000 reads so far
2011-05-20 08:59:21,382 - INFO - Processed 74200000 reads so far
2011-05-20 08:59:33,144 - INFO - Processed 74300000 reads so far
2011-05-20 08:59:44,204 - INFO - Processed 74400000 reads so far
2011-05-20 08:59:55,064 - INFO - Processed 74500000 reads so far
2011-05-20 09:00:07,887 - INFO - Processed 74600000 reads so far
2011-05-20 09:00:19,083 - INFO - Processed 74700000 reads so far
2011-05-20 09:00:19,838 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1_random:0-20010000
2011-05-20 09:00:28,934 - INFO - Processed 74800000 reads so far
2011-05-20 09:00:31,544 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:2990000-23010000
2011-05-20 09:00:39,317 - INFO - Processed 74900000 reads so far
2011-05-20 09:00:49,969 - INFO - Processed 75000000 reads so far
2011-05-20 09:01:00,961 - INFO - Processed 75100000 reads so far
2011-05-20 09:01:10,507 - INFO - Processed 75200000 reads so far
2011-05-20 09:01:21,293 - INFO - Processed 75300000 reads so far
2011-05-20 09:01:32,521 - INFO - Processed 75400000 reads so far
2011-05-20 09:01:42,694 - INFO - Processed 75500000 reads so far
2011-05-20 09:01:54,470 - INFO - Processed 75600000 reads so far
2011-05-20 09:02:07,413 - INFO - Processed 75700000 reads so far
2011-05-20 09:02:18,919 - INFO - Processed 75800000 reads so far
2011-05-20 09:02:30,180 - INFO - Processed 75900000 reads so far
2011-05-20 09:02:40,428 - INFO - Processed 76000000 reads so far
2011-05-20 09:02:45,133 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:22990043-43010043
2011-05-20 09:02:51,390 - INFO - Processed 76100000 reads so far
2011-05-20 09:03:02,492 - INFO - Processed 76200000 reads so far
2011-05-20 09:03:12,450 - INFO - Processed 76300000 reads so far
2011-05-20 09:03:22,563 - INFO - Processed 76400000 reads so far
2011-05-20 09:03:30,828 - INFO - Processed 76500000 reads so far
2011-05-20 09:03:39,096 - INFO - Processed 76600000 reads so far
2011-05-20 09:03:47,740 - INFO - Processed 76700000 reads so far
2011-05-20 09:04:25,552 - INFO - Processed 76800000 reads so far
2011-05-20 09:04:34,017 - INFO - Processed 76900000 reads so far
2011-05-20 09:04:44,088 - INFO - Processed 77000000 reads so far
2011-05-20 09:04:54,712 - INFO - Processed 77100000 reads so far
2011-05-20 09:05:03,892 - INFO - Processed 77200000 reads so far
2011-05-20 09:05:11,642 - INFO - Processed 77300000 reads so far
2011-05-20 09:05:13,535 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:42990054-63010054
2011-05-20 09:05:24,548 - INFO - Processed 77400000 reads so far
2011-05-20 09:05:33,063 - INFO - Processed 77500000 reads so far
2011-05-20 09:05:41,099 - INFO - Processed 77600000 reads so far
2011-05-20 09:05:52,338 - INFO - Processed 77700000 reads so far
2011-05-20 09:06:04,532 - INFO - Processed 77800000 reads so far
2011-05-20 09:06:15,926 - INFO - Processed 77900000 reads so far
2011-05-20 09:06:28,702 - INFO - Processed 78000000 reads so far
2011-05-20 09:06:40,356 - INFO - Processed 78100000 reads so far
2011-05-20 09:06:52,044 - INFO - Processed 78200000 reads so far
2011-05-20 09:07:04,015 - INFO - Processed 78300000 reads so far
2011-05-20 09:07:14,075 - INFO - Processed 78400000 reads so far
2011-05-20 09:07:19,942 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:62990059-83010059
2011-05-20 09:07:24,977 - INFO - Processed 78500000 reads so far
2011-05-20 09:07:33,539 - INFO - Processed 78600000 reads so far
2011-05-20 09:07:44,899 - INFO - Processed 78700000 reads so far
2011-05-20 09:07:56,124 - INFO - Processed 78800000 reads so far
2011-05-20 09:08:06,995 - INFO - Processed 78900000 reads so far
2011-05-20 09:08:17,864 - INFO - Processed 79000000 reads so far
2011-05-20 09:08:28,800 - INFO - Processed 79100000 reads so far
2011-05-20 09:08:39,643 - INFO - Processed 79200000 reads so far
2011-05-20 09:08:50,606 - INFO - Processed 79300000 reads so far
2011-05-20 09:09:01,657 - INFO - Processed 79400000 reads so far
2011-05-20 09:09:11,139 - INFO - Processed 79500000 reads so far
2011-05-20 09:09:21,689 - INFO - Processed 79600000 reads so far
2011-05-20 09:09:25,039 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:82990071-103010071
2011-05-20 09:09:34,046 - INFO - Processed 79700000 reads so far
2011-05-20 09:09:42,656 - INFO - Processed 79800000 reads so far
2011-05-20 09:09:51,988 - INFO - Processed 79900000 reads so far
2011-05-20 09:10:00,816 - INFO - Processed 80000000 reads so far
2011-05-20 09:10:10,440 - INFO - Processed 80100000 reads so far
2011-05-20 09:10:19,090 - INFO - Processed 80200000 reads so far
2011-05-20 09:10:27,855 - INFO - Processed 80300000 reads so far
2011-05-20 09:10:34,610 - INFO - Processed 80400000 reads so far
2011-05-20 09:10:41,575 - INFO - Processed 80500000 reads so far
2011-05-20 09:10:47,815 - INFO - Processed 80600000 reads so far
2011-05-20 09:10:54,652 - INFO - Processed 80700000 reads so far
2011-05-20 09:11:04,846 - INFO - Processed 80800000 reads so far
2011-05-20 09:11:13,365 - INFO - Processed 80900000 reads so far
2011-05-20 09:11:22,877 - INFO - Processed 81000000 reads so far
2011-05-20 09:11:32,438 - INFO - Processed 81100000 reads so far
2011-05-20 09:11:42,585 - INFO - Processed 81200000 reads so far
2011-05-20 09:11:52,232 - INFO - Processed 81300000 reads so far
2011-05-20 09:12:01,202 - INFO - Processed 81400000 reads so far
2011-05-20 09:12:09,876 - INFO - Processed 81500000 reads so far
2011-05-20 09:12:18,603 - INFO - Processed 81600000 reads so far
2011-05-20 09:12:26,879 - INFO - Processed 81700000 reads so far
2011-05-20 09:12:35,905 - INFO - Processed 81800000 reads so far
2011-05-20 09:12:44,834 - INFO - Processed 81900000 reads so far
2011-05-20 09:12:53,683 - INFO - Processed 82000000 reads so far
2011-05-20 09:13:00,381 - INFO - Processed 82100000 reads so far
2011-05-20 09:13:07,363 - INFO - Processed 82200000 reads so far
2011-05-20 09:13:15,065 - INFO - Processed 82300000 reads so far
2011-05-20 09:13:24,308 - INFO - Processed 82400000 reads so far
2011-05-20 09:13:32,090 - INFO - Processed 82500000 reads so far
2011-05-20 09:13:38,612 - INFO - Processed 82600000 reads so far
2011-05-20 09:13:44,280 - INFO - Processed 82700000 reads so far
2011-05-20 09:13:50,017 - INFO - Processed 82800000 reads so far
2011-05-20 09:13:58,683 - INFO - Processed 82900000 reads so far
2011-05-20 09:14:09,282 - INFO - Processed 83000000 reads so far
2011-05-20 09:14:17,592 - INFO - Processed 83100000 reads so far
2011-05-20 09:14:25,233 - INFO - Processed 83200000 reads so far
2011-05-20 09:14:34,108 - INFO - Processed 83300000 reads so far
2011-05-20 09:14:43,112 - INFO - Processed 83400000 reads so far
2011-05-20 09:14:51,798 - INFO - Processed 83500000 reads so far
2011-05-20 09:14:58,555 - INFO - Processed 83600000 reads so far
2011-05-20 09:15:05,934 - INFO - Processed 83700000 reads so far
2011-05-20 09:15:13,610 - INFO - Processed 83800000 reads so far
2011-05-20 09:15:23,668 - INFO - Processed 83900000 reads so far
2011-05-20 09:15:30,550 - INFO - Processed 84000000 reads so far
2011-05-20 09:15:38,887 - INFO - Processed 84100000 reads so far
2011-05-20 09:15:47,222 - INFO - Processed 84200000 reads so far
2011-05-20 09:15:53,236 - INFO - Processed 84300000 reads so far
2011-05-20 09:15:59,845 - INFO - Processed 84400000 reads so far
2011-05-20 09:16:06,521 - INFO - Processed 84500000 reads so far
2011-05-20 09:16:15,437 - INFO - Processed 84600000 reads so far
2011-05-20 09:16:28,435 - INFO - Processed 84700000 reads so far
2011-05-20 09:16:37,077 - INFO - Processed 84800000 reads so far
2011-05-20 09:16:45,026 - INFO - Processed 84900000 reads so far
2011-05-20 09:16:54,117 - INFO - Processed 85000000 reads so far
2011-05-20 09:17:00,311 - INFO - Processed 85100000 reads so far
2011-05-20 09:17:08,774 - INFO - Processed 85200000 reads so far
2011-05-20 09:17:19,095 - INFO - Processed 85300000 reads so far
2011-05-20 09:17:27,475 - INFO - Processed 85400000 reads so far
2011-05-20 09:17:34,078 - INFO - Processed 85500000 reads so far
2011-05-20 09:17:43,260 - INFO - Processed 85600000 reads so far
2011-05-20 09:17:49,871 - INFO - Processed 85700000 reads so far
2011-05-20 09:17:57,041 - INFO - Processed 85800000 reads so far
2011-05-20 09:18:04,803 - INFO - Processed 85900000 reads so far
2011-05-20 09:18:10,795 - INFO - Processed 86000000 reads so far
2011-05-20 09:18:20,243 - INFO - Processed 86100000 reads so far
2011-05-20 09:18:25,669 - INFO - Processed 86200000 reads so far
2011-05-20 09:18:32,871 - INFO - Processed 86300000 reads so far
2011-05-20 09:18:41,399 - INFO - Processed 86400000 reads so far
2011-05-20 09:18:51,369 - INFO - Processed 86500000 reads so far
2011-05-20 09:18:59,118 - INFO - Processed 86600000 reads so far
2011-05-20 09:19:05,853 - INFO - Processed 86700000 reads so far
2011-05-20 09:19:13,278 - INFO - Processed 86800000 reads so far
2011-05-20 09:19:21,421 - INFO - Processed 86900000 reads so far
2011-05-20 09:19:28,742 - INFO - Processed 87000000 reads so far
2011-05-20 09:19:36,442 - INFO - Processed 87100000 reads so far
2011-05-20 09:19:42,474 - INFO - Processed 87200000 reads so far
2011-05-20 09:19:51,105 - INFO - Processed 87300000 reads so far
2011-05-20 09:20:01,614 - INFO - Processed 87400000 reads so far
2011-05-20 09:20:07,796 - INFO - Processed 87500000 reads so far
2011-05-20 09:20:20,311 - INFO - Processed 87600000 reads so far
2011-05-20 09:20:26,876 - INFO - Processed 87700000 reads so far
2011-05-20 09:20:34,771 - INFO - Processed 87800000 reads so far
2011-05-20 09:20:43,038 - INFO - Processed 87900000 reads so far
2011-05-20 09:20:51,082 - INFO - Processed 88000000 reads so far
2011-05-20 09:21:00,133 - INFO - Processed 88100000 reads so far
2011-05-20 09:21:10,197 - INFO - Processed 88200000 reads so far
2011-05-20 09:21:16,313 - INFO - Processed 88300000 reads so far
2011-05-20 09:21:24,752 - INFO - Processed 88400000 reads so far
2011-05-20 09:21:31,463 - INFO - Processed 88500000 reads so far
2011-05-20 09:21:39,765 - INFO - Processed 88600000 reads so far
2011-05-20 09:21:47,867 - INFO - Processed 88700000 reads so far
2011-05-20 09:21:55,245 - INFO - Processed 88800000 reads so far
2011-05-20 09:22:02,094 - INFO - Processed 88900000 reads so far
2011-05-20 09:22:08,459 - INFO - Processed 89000000 reads so far
2011-05-20 09:22:18,352 - INFO - Processed 89100000 reads so far
2011-05-20 09:22:27,076 - INFO - Processed 89200000 reads so far
2011-05-20 09:22:34,961 - INFO - Processed 89300000 reads so far
2011-05-20 09:22:41,816 - INFO - Processed 89400000 reads so far
2011-05-20 09:22:49,734 - INFO - Processed 89500000 reads so far
2011-05-20 09:22:56,896 - INFO - Processed 89600000 reads so far
2011-05-20 09:23:03,970 - INFO - Processed 89700000 reads so far
2011-05-20 09:23:12,092 - INFO - Processed 89800000 reads so far
2011-05-20 09:23:21,292 - INFO - Processed 89900000 reads so far
2011-05-20 09:23:30,039 - INFO - Processed 90000000 reads so far
2011-05-20 09:23:38,001 - INFO - Processed 90100000 reads so far
2011-05-20 09:23:46,331 - INFO - Processed 90200000 reads so far
2011-05-20 09:23:55,119 - INFO - Processed 90300000 reads so far
2011-05-20 09:24:04,907 - INFO - Processed 90400000 reads so far
2011-05-20 09:24:14,336 - INFO - Processed 90500000 reads so far
2011-05-20 09:24:23,458 - INFO - Processed 90600000 reads so far
2011-05-20 09:24:31,992 - INFO - Processed 90700000 reads so far
2011-05-20 09:24:41,043 - INFO - Processed 90800000 reads so far
2011-05-20 09:24:46,996 - INFO - Processed 90900000 reads so far
2011-05-20 09:24:54,048 - INFO - Processed 91000000 reads so far
2011-05-20 09:25:00,896 - INFO - Processed 91100000 reads so far
2011-05-20 09:25:12,709 - INFO - Processed 91200000 reads so far
2011-05-20 09:25:21,500 - INFO - Processed 91300000 reads so far
2011-05-20 09:25:29,805 - INFO - Processed 91400000 reads so far
2011-05-20 09:25:37,984 - INFO - Processed 91500000 reads so far
2011-05-20 09:25:49,200 - INFO - Processed 91600000 reads so far
2011-05-20 09:26:01,562 - INFO - Processed 91700000 reads so far
2011-05-20 09:26:10,253 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:102990083-123010083
2011-05-20 09:26:12,121 - INFO - Processed 91800000 reads so far
2011-05-20 09:26:22,753 - INFO - Processed 91900000 reads so far
2011-05-20 09:26:34,815 - INFO - Processed 92000000 reads so far
2011-05-20 09:26:45,698 - INFO - Processed 92100000 reads so far
2011-05-20 09:26:55,399 - INFO - Processed 92200000 reads so far
2011-05-20 09:27:18,971 - INFO - Processed 92300000 reads so far
2011-05-20 09:27:47,296 - INFO - Processed 92400000 reads so far
2011-05-20 09:27:58,084 - INFO - Processed 92500000 reads so far
2011-05-20 09:28:09,350 - INFO - Processed 92600000 reads so far
2011-05-20 09:28:19,237 - INFO - Processed 92700000 reads so far
2011-05-20 09:28:27,984 - INFO - Processed 92800000 reads so far
2011-05-20 09:28:35,720 - INFO - Processed 92900000 reads so far
2011-05-20 09:28:41,938 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:122990139-143010139
2011-05-20 09:28:45,126 - INFO - Processed 93000000 reads so far
2011-05-20 09:28:54,357 - INFO - Processed 93100000 reads so far
2011-05-20 09:29:06,678 - INFO - Processed 93200000 reads so far
2011-05-20 09:29:21,795 - INFO - Processed 93300000 reads so far
2011-05-20 09:29:32,864 - INFO - Processed 93400000 reads so far
2011-05-20 09:29:44,171 - INFO - Processed 93500000 reads so far
2011-05-20 09:29:55,956 - INFO - Processed 93600000 reads so far
2011-05-20 09:30:06,944 - INFO - Processed 93700000 reads so far
2011-05-20 09:30:18,006 - INFO - Processed 93800000 reads so far
2011-05-20 09:30:31,060 - INFO - Processed 93900000 reads so far
2011-05-20 09:30:44,224 - INFO - Processed 94000000 reads so far
2011-05-20 09:30:56,232 - INFO - Processed 94100000 reads so far
2011-05-20 09:31:05,648 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:142990149-163010149
2011-05-20 09:31:07,301 - INFO - Processed 94200000 reads so far
2011-05-20 09:31:18,631 - INFO - Processed 94300000 reads so far
2011-05-20 09:31:33,037 - INFO - Processed 94400000 reads so far
2011-05-20 09:31:45,376 - INFO - Processed 94500000 reads so far
2011-05-20 09:31:57,221 - INFO - Processed 94600000 reads so far
2011-05-20 09:32:09,237 - INFO - Processed 94700000 reads so far
2011-05-20 09:32:20,705 - INFO - Processed 94800000 reads so far
2011-05-20 09:32:31,416 - INFO - Processed 94900000 reads so far
2011-05-20 09:32:40,026 - INFO - Processed 95000000 reads so far
2011-05-20 09:32:49,075 - INFO - Processed 95100000 reads so far
2011-05-20 09:32:57,313 - INFO - Processed 95200000 reads so far
2011-05-20 09:33:08,164 - INFO - Processed 95300000 reads so far
2011-05-20 09:33:17,777 - INFO - Processed 95400000 reads so far
2011-05-20 09:33:22,411 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:162990171-183010171
2011-05-20 09:33:26,864 - INFO - Processed 95500000 reads so far
2011-05-20 09:33:35,880 - INFO - Processed 95600000 reads so far
2011-05-20 09:33:44,945 - INFO - Processed 95700000 reads so far
2011-05-20 09:33:59,179 - INFO - Processed 95800000 reads so far
2011-05-20 09:34:08,272 - INFO - Processed 95900000 reads so far
2011-05-20 09:34:16,624 - INFO - Processed 96000000 reads so far
2011-05-20 09:34:24,027 - INFO - Processed 96100000 reads so far
2011-05-20 09:34:35,645 - INFO - Processed 96200000 reads so far
2011-05-20 09:34:45,567 - INFO - Processed 96300000 reads so far
2011-05-20 09:34:54,366 - INFO - Processed 96400000 reads so far
2011-05-20 09:35:02,908 - INFO - Processed 96500000 reads so far
2011-05-20 09:35:12,644 - INFO - Processed 96600000 reads so far
2011-05-20 09:35:16,351 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:2989995-23009995
2011-05-20 09:35:18,828 - INFO - Processed 96700000 reads so far
2011-05-20 09:35:26,129 - INFO - Processed 96800000 reads so far
2011-05-20 09:35:33,532 - INFO - Processed 96900000 reads so far
2011-05-20 09:35:44,026 - INFO - Processed 97000000 reads so far
2011-05-20 09:35:54,643 - INFO - Processed 97100000 reads so far
2011-05-20 09:36:02,416 - INFO - Processed 97200000 reads so far
2011-05-20 09:36:10,838 - INFO - Processed 97300000 reads so far
2011-05-20 09:36:18,578 - INFO - Processed 97400000 reads so far
2011-05-20 09:36:27,807 - INFO - Processed 97500000 reads so far
2011-05-20 09:36:36,963 - INFO - Processed 97600000 reads so far
2011-05-20 09:36:47,465 - INFO - Processed 97700000 reads so far
2011-05-20 09:36:58,881 - INFO - Processed 97800000 reads so far
2011-05-20 09:37:00,505 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:22990013-43010013
2011-05-20 09:37:09,248 - INFO - Processed 97900000 reads so far
2011-05-20 09:37:18,228 - INFO - Processed 98000000 reads so far
2011-05-20 09:37:27,671 - INFO - Processed 98100000 reads so far
2011-05-20 09:37:38,970 - INFO - Processed 98200000 reads so far
2011-05-20 09:37:46,582 - INFO - Processed 98300000 reads so far
2011-05-20 09:37:53,915 - INFO - Processed 98400000 reads so far
2011-05-20 09:38:03,119 - INFO - Processed 98500000 reads so far
2011-05-20 09:38:09,810 - INFO - Processed 98600000 reads so far
2011-05-20 09:38:18,878 - INFO - Processed 98700000 reads so far
2011-05-20 09:38:27,535 - INFO - Processed 98800000 reads so far
2011-05-20 09:38:36,092 - INFO - Processed 98900000 reads so far
2011-05-20 09:38:45,258 - INFO - Processed 99000000 reads so far
2011-05-20 09:38:45,417 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:42990040-63010040
2011-05-20 09:38:56,028 - INFO - Processed 99100000 reads so far
2011-05-20 09:39:08,344 - INFO - Processed 99200000 reads so far
2011-05-20 09:39:21,193 - INFO - Processed 99300000 reads so far
2011-05-20 09:39:32,302 - INFO - Processed 99400000 reads so far
2011-05-20 09:39:43,337 - INFO - Processed 99500000 reads so far
2011-05-20 09:39:55,642 - INFO - Processed 99600000 reads so far
2011-05-20 09:40:03,914 - INFO - Processed 99700000 reads so far
2011-05-20 09:40:10,794 - INFO - Processed 99800000 reads so far
2011-05-20 09:40:20,106 - INFO - Processed 99900000 reads so far
2011-05-20 09:40:29,611 - INFO - Processed 100000000 reads so far
2011-05-20 09:40:38,681 - INFO - Processed 100100000 reads so far
2011-05-20 09:40:41,068 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:62990046-83010046
2011-05-20 09:40:49,284 - INFO - Processed 100200000 reads so far
2011-05-20 09:40:58,495 - INFO - Processed 100300000 reads so far
2011-05-20 09:41:08,423 - INFO - Processed 100400000 reads so far
2011-05-20 09:41:17,091 - INFO - Processed 100500000 reads so far
2011-05-20 09:41:25,476 - INFO - Processed 100600000 reads so far
2011-05-20 09:41:33,923 - INFO - Processed 100700000 reads so far
2011-05-20 09:41:44,064 - INFO - Processed 100800000 reads so far
2011-05-20 09:41:53,733 - INFO - Processed 100900000 reads so far
2011-05-20 09:42:03,845 - INFO - Processed 101000000 reads so far
2011-05-20 09:42:13,118 - INFO - Processed 101100000 reads so far
2011-05-20 09:42:23,203 - INFO - Processed 101200000 reads so far
2011-05-20 09:42:28,085 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:82990063-103010063
2011-05-20 09:42:32,344 - INFO - Processed 101300000 reads so far
2011-05-20 09:42:43,925 - INFO - Processed 101400000 reads so far
2011-05-20 09:42:55,967 - INFO - Processed 101500000 reads so far
2011-05-20 09:43:07,008 - INFO - Processed 101600000 reads so far
2011-05-20 09:43:16,330 - INFO - Processed 101700000 reads so far
2011-05-20 09:43:27,083 - INFO - Processed 101800000 reads so far
2011-05-20 09:43:36,187 - INFO - Processed 101900000 reads so far
2011-05-20 09:43:45,414 - INFO - Processed 102000000 reads so far
2011-05-20 09:43:54,071 - INFO - Processed 102100000 reads so far
2011-05-20 09:44:02,393 - INFO - Processed 102200000 reads so far
2011-05-20 09:44:11,507 - INFO - Processed 102300000 reads so far
2011-05-20 09:44:20,544 - INFO - Processed 102400000 reads so far
2011-05-20 09:44:29,258 - INFO - Processed 102500000 reads so far
2011-05-20 09:44:29,973 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:102990112-123010112
2011-05-20 09:44:39,315 - INFO - Processed 102600000 reads so far
2011-05-20 09:44:47,892 - INFO - Processed 102700000 reads so far
2011-05-20 09:44:57,933 - INFO - Processed 102800000 reads so far
2011-05-20 09:45:07,791 - INFO - Processed 102900000 reads so far
2011-05-20 09:45:17,107 - INFO - Processed 103000000 reads so far
2011-05-20 09:45:27,782 - INFO - Processed 103100000 reads so far
2011-05-20 09:45:52,266 - INFO - Processed 103200000 reads so far
2011-05-20 09:46:03,439 - INFO - Processed 103300000 reads so far
2011-05-20 09:46:15,706 - INFO - Processed 103400000 reads so far
2011-05-20 09:46:27,876 - INFO - Processed 103500000 reads so far
2011-05-20 09:46:40,129 - INFO - Processed 103600000 reads so far
2011-05-20 09:46:48,550 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:122990117-143010117
2011-05-20 09:46:52,384 - INFO - Processed 103700000 reads so far
2011-05-20 09:47:03,722 - INFO - Processed 103800000 reads so far
2011-05-20 09:47:11,973 - INFO - Processed 103900000 reads so far
2011-05-20 09:47:18,745 - INFO - Processed 104000000 reads so far
2011-05-20 09:47:26,941 - INFO - Processed 104100000 reads so far
2011-05-20 09:47:33,885 - INFO - Processed 104200000 reads so far
2011-05-20 09:47:41,278 - INFO - Processed 104300000 reads so far
2011-05-20 09:47:48,654 - INFO - Processed 104400000 reads so far
2011-05-20 09:47:55,930 - INFO - Processed 104500000 reads so far
2011-05-20 09:48:03,230 - INFO - Processed 104600000 reads so far
2011-05-20 09:48:11,067 - INFO - Processed 104700000 reads so far
2011-05-20 09:48:18,897 - INFO - Processed 104800000 reads so far
2011-05-20 09:48:21,640 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:142990130-163010130
2011-05-20 09:48:26,611 - INFO - Processed 104900000 reads so far
2011-05-20 09:48:34,916 - INFO - Processed 105000000 reads so far
2011-05-20 09:48:44,332 - INFO - Processed 105100000 reads so far
2011-05-20 09:48:52,658 - INFO - Processed 105200000 reads so far
2011-05-20 09:49:00,951 - INFO - Processed 105300000 reads so far
2011-05-20 09:49:08,112 - INFO - Processed 105400000 reads so far
2011-05-20 09:49:14,974 - INFO - Processed 105500000 reads so far
2011-05-20 09:49:22,869 - INFO - Processed 105600000 reads so far
2011-05-20 09:49:30,019 - INFO - Processed 105700000 reads so far
2011-05-20 09:49:37,125 - INFO - Processed 105800000 reads so far
2011-05-20 09:49:39,719 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3_random:0-20010026
2011-05-20 09:49:39,819 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:2989989-23009989
2011-05-20 09:49:43,696 - INFO - Processed 105900000 reads so far
2011-05-20 09:49:50,553 - INFO - Processed 106000000 reads so far
2011-05-20 09:50:02,126 - INFO - Processed 106100000 reads so far
2011-05-20 09:50:09,782 - INFO - Processed 106200000 reads so far
2011-05-20 09:50:17,883 - INFO - Processed 106300000 reads so far
2011-05-20 09:50:26,012 - INFO - Processed 106400000 reads so far
2011-05-20 09:50:32,765 - INFO - Processed 106500000 reads so far
2011-05-20 09:50:41,388 - INFO - Processed 106600000 reads so far
2011-05-20 09:50:49,835 - INFO - Processed 106700000 reads so far
2011-05-20 09:50:58,974 - INFO - Processed 106800000 reads so far
2011-05-20 09:51:08,876 - INFO - Processed 106900000 reads so far
2011-05-20 09:51:18,789 - INFO - Processed 107000000 reads so far
2011-05-20 09:51:21,624 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:22990005-43010005
2011-05-20 09:51:28,205 - INFO - Processed 107100000 reads so far
2011-05-20 09:51:40,731 - INFO - Processed 107200000 reads so far
2011-05-20 09:51:50,107 - INFO - Processed 107300000 reads so far
2011-05-20 09:51:57,248 - INFO - Processed 107400000 reads so far
2011-05-20 09:52:05,766 - INFO - Processed 107500000 reads so far
2011-05-20 09:52:14,380 - INFO - Processed 107600000 reads so far
2011-05-20 09:52:25,651 - INFO - Processed 107700000 reads so far
2011-05-20 09:52:36,615 - INFO - Processed 107800000 reads so far
2011-05-20 09:52:47,038 - INFO - Processed 107900000 reads so far
2011-05-20 09:52:55,510 - INFO - Processed 108000000 reads so far
2011-05-20 09:53:05,302 - INFO - Processed 108100000 reads so far
2011-05-20 09:53:11,380 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:42990008-63010008
2011-05-20 09:53:17,241 - INFO - Processed 108200000 reads so far
2011-05-20 09:53:27,552 - INFO - Processed 108300000 reads so far
2011-05-20 09:53:38,779 - INFO - Processed 108400000 reads so far
2011-05-20 09:53:50,601 - INFO - Processed 108500000 reads so far
2011-05-20 09:54:00,627 - INFO - Processed 108600000 reads so far
2011-05-20 09:54:09,420 - INFO - Processed 108700000 reads so far
2011-05-20 09:54:18,721 - INFO - Processed 108800000 reads so far
2011-05-20 09:54:31,383 - INFO - Processed 108900000 reads so far
2011-05-20 09:54:41,584 - INFO - Processed 109000000 reads so far
2011-05-20 09:54:51,416 - INFO - Processed 109100000 reads so far
2011-05-20 09:55:03,113 - INFO - Processed 109200000 reads so far
2011-05-20 09:55:13,981 - INFO - Processed 109300000 reads so far
2011-05-20 09:55:22,977 - INFO - Processed 109400000 reads so far
2011-05-20 09:55:23,389 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:62990031-83010031
2011-05-20 09:55:32,811 - INFO - Processed 109500000 reads so far
2011-05-20 09:55:42,169 - INFO - Processed 109600000 reads so far
2011-05-20 09:55:50,891 - INFO - Processed 109700000 reads so far
2011-05-20 09:56:00,211 - INFO - Processed 109800000 reads so far
2011-05-20 09:56:10,430 - INFO - Processed 109900000 reads so far
2011-05-20 09:56:19,764 - INFO - Processed 110000000 reads so far
2011-05-20 09:56:29,832 - INFO - Processed 110100000 reads so far
2011-05-20 09:56:39,307 - INFO - Processed 110200000 reads so far
2011-05-20 09:56:51,806 - INFO - Processed 110300000 reads so far
2011-05-20 09:57:02,526 - INFO - Processed 110400000 reads so far
2011-05-20 09:57:12,896 - INFO - Processed 110500000 reads so far
2011-05-20 09:57:18,949 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:82990075-103010075
2011-05-20 09:57:23,637 - INFO - Processed 110600000 reads so far
2011-05-20 09:57:35,532 - INFO - Processed 110700000 reads so far
2011-05-20 09:57:46,115 - INFO - Processed 110800000 reads so far
2011-05-20 09:57:58,610 - INFO - Processed 110900000 reads so far
2011-05-20 09:58:10,236 - INFO - Processed 111000000 reads so far
2011-05-20 09:58:22,252 - INFO - Processed 111100000 reads so far
2011-05-20 09:58:35,096 - INFO - Processed 111200000 reads so far
2011-05-20 09:58:47,776 - INFO - Processed 111300000 reads so far
2011-05-20 09:58:59,649 - INFO - Processed 111400000 reads so far
2011-05-20 09:59:11,642 - INFO - Processed 111500000 reads so far
2011-05-20 09:59:23,377 - INFO - Processed 111600000 reads so far
2011-05-20 09:59:33,845 - INFO - Processed 111700000 reads so far
2011-05-20 09:59:38,536 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:102990092-123010092
2011-05-20 09:59:44,375 - INFO - Processed 111800000 reads so far
2011-05-20 09:59:55,184 - INFO - Processed 111900000 reads so far
2011-05-20 10:00:05,167 - INFO - Processed 112000000 reads so far
2011-05-20 10:00:14,979 - INFO - Processed 112100000 reads so far
2011-05-20 10:00:24,308 - INFO - Processed 112200000 reads so far
2011-05-20 10:00:34,547 - INFO - Processed 112300000 reads so far
2011-05-20 10:00:47,152 - INFO - Processed 112400000 reads so far
2011-05-20 10:00:58,719 - INFO - Processed 112500000 reads so far
2011-05-20 10:01:08,050 - INFO - Processed 112600000 reads so far
2011-05-20 10:01:19,327 - INFO - Processed 112700000 reads so far
2011-05-20 10:01:30,193 - INFO - Processed 112800000 reads so far
2011-05-20 10:01:40,071 - INFO - Processed 112900000 reads so far
2011-05-20 10:01:41,134 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:122990097-143010097
2011-05-20 10:01:49,131 - INFO - Processed 113000000 reads so far
2011-05-20 10:01:59,128 - INFO - Processed 113100000 reads so far
2011-05-20 10:02:09,461 - INFO - Processed 113200000 reads so far
2011-05-20 10:02:20,257 - INFO - Processed 113300000 reads so far
2011-05-20 10:02:31,689 - INFO - Processed 113400000 reads so far
2011-05-20 10:02:41,926 - INFO - Processed 113500000 reads so far
2011-05-20 10:02:53,608 - INFO - Processed 113600000 reads so far
2011-05-20 10:03:06,591 - INFO - Processed 113700000 reads so far
2011-05-20 10:03:18,959 - INFO - Processed 113800000 reads so far
2011-05-20 10:03:30,202 - INFO - Processed 113900000 reads so far
2011-05-20 10:03:40,250 - INFO - Processed 114000000 reads so far
2011-05-20 10:03:51,725 - INFO - Processed 114100000 reads so far
2011-05-20 10:04:03,754 - INFO - Processed 114200000 reads so far
2011-05-20 10:04:05,881 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:142990127-163010127
2011-05-20 10:04:16,682 - INFO - Processed 114300000 reads so far
2011-05-20 10:04:28,689 - INFO - Processed 114400000 reads so far
2011-05-20 10:04:39,695 - INFO - Processed 114500000 reads so far
2011-05-20 10:04:51,216 - INFO - Processed 114600000 reads so far
2011-05-20 10:05:03,126 - INFO - Processed 114700000 reads so far
2011-05-20 10:05:14,383 - INFO - Processed 114800000 reads so far
2011-05-20 10:05:25,408 - INFO - Processed 114900000 reads so far
2011-05-20 10:05:37,284 - INFO - Processed 115000000 reads so far
2011-05-20 10:05:48,947 - INFO - Processed 115100000 reads so far
2011-05-20 10:05:54,742 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4_random:0-20010084
2011-05-20 10:05:55,528 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:2990021-23010021
2011-05-20 10:05:59,295 - INFO - Processed 115200000 reads so far
2011-05-20 10:06:09,305 - INFO - Processed 115300000 reads so far
2011-05-20 10:06:20,182 - INFO - Processed 115400000 reads so far
2011-05-20 10:06:28,530 - INFO - Processed 115500000 reads so far
2011-05-20 10:06:40,235 - INFO - Processed 115600000 reads so far
2011-05-20 10:06:49,432 - INFO - Processed 115700000 reads so far
2011-05-20 10:06:59,897 - INFO - Processed 115800000 reads so far
2011-05-20 10:07:12,207 - INFO - Processed 115900000 reads so far
2011-05-20 10:07:23,342 - INFO - Processed 116000000 reads so far
2011-05-20 10:07:34,337 - INFO - Processed 116100000 reads so far
2011-05-20 10:07:47,845 - INFO - Processed 116200000 reads so far
2011-05-20 10:08:00,032 - INFO - Processed 116300000 reads so far
2011-05-20 10:08:03,885 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:22990534-43010534
2011-05-20 10:08:11,464 - INFO - Processed 116400000 reads so far
2011-05-20 10:08:22,477 - INFO - Processed 116500000 reads so far
2011-05-20 10:08:33,179 - INFO - Processed 116600000 reads so far
2011-05-20 10:08:44,232 - INFO - Processed 116700000 reads so far
2011-05-20 10:08:56,953 - INFO - Processed 116800000 reads so far
2011-05-20 10:09:08,138 - INFO - Processed 116900000 reads so far
2011-05-20 10:09:20,670 - INFO - Processed 117000000 reads so far
2011-05-20 10:09:39,105 - INFO - Processed 117100000 reads so far
2011-05-20 10:09:49,876 - INFO - Processed 117200000 reads so far
2011-05-20 10:10:16,076 - INFO - Processed 117300000 reads so far
2011-05-20 10:10:27,121 - INFO - Processed 117400000 reads so far
2011-05-20 10:10:41,103 - INFO - Processed 117500000 reads so far
2011-05-20 10:11:09,277 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:42990545-63010545
2011-05-20 10:11:10,237 - INFO - Processed 117600000 reads so far
2011-05-20 10:11:23,726 - INFO - Processed 117700000 reads so far
2011-05-20 10:11:36,431 - INFO - Processed 117800000 reads so far
2011-05-20 10:11:49,783 - INFO - Processed 117900000 reads so far
2011-05-20 10:12:00,559 - INFO - Processed 118000000 reads so far
2011-05-20 10:12:10,038 - INFO - Processed 118100000 reads so far
2011-05-20 10:12:20,365 - INFO - Processed 118200000 reads so far
2011-05-20 10:12:28,605 - INFO - Processed 118300000 reads so far
2011-05-20 10:12:38,091 - INFO - Processed 118400000 reads so far
2011-05-20 10:12:46,106 - INFO - Processed 118500000 reads so far
2011-05-20 10:12:55,990 - INFO - Processed 118600000 reads so far
2011-05-20 10:13:06,101 - INFO - Processed 118700000 reads so far
2011-05-20 10:13:07,339 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:62990550-83010550
2011-05-20 10:13:20,544 - INFO - Processed 118800000 reads so far
2011-05-20 10:13:32,090 - INFO - Processed 118900000 reads so far
2011-05-20 10:13:44,227 - INFO - Processed 119000000 reads so far
2011-05-20 10:13:54,087 - INFO - Processed 119100000 reads so far
2011-05-20 10:14:02,334 - INFO - Processed 119200000 reads so far
2011-05-20 10:14:10,193 - INFO - Processed 119300000 reads so far
2011-05-20 10:14:18,737 - INFO - Processed 119400000 reads so far
2011-05-20 10:14:27,273 - INFO - Processed 119500000 reads so far
2011-05-20 10:14:36,580 - INFO - Processed 119600000 reads so far
2011-05-20 10:14:46,480 - INFO - Processed 119700000 reads so far
2011-05-20 10:14:54,917 - INFO - Processed 119800000 reads so far
2011-05-20 10:15:01,188 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:82990563-103010563
2011-05-20 10:15:04,681 - INFO - Processed 119900000 reads so far
2011-05-20 10:15:12,576 - INFO - Processed 120000000 reads so far
2011-05-20 10:15:20,706 - INFO - Processed 120100000 reads so far
2011-05-20 10:15:29,707 - INFO - Processed 120200000 reads so far
2011-05-20 10:15:38,297 - INFO - Processed 120300000 reads so far
2011-05-20 10:15:46,116 - INFO - Processed 120400000 reads so far
2011-05-20 10:15:54,186 - INFO - Processed 120500000 reads so far
2011-05-20 10:16:01,962 - INFO - Processed 120600000 reads so far
2011-05-20 10:16:11,067 - INFO - Processed 120700000 reads so far
2011-05-20 10:16:21,340 - INFO - Processed 120800000 reads so far
2011-05-20 10:16:30,316 - INFO - Processed 120900000 reads so far
2011-05-20 10:16:36,290 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:102990585-123010585
2011-05-20 10:16:39,625 - INFO - Processed 121000000 reads so far
2011-05-20 10:16:48,662 - INFO - Processed 121100000 reads so far
2011-05-20 10:16:56,968 - INFO - Processed 121200000 reads so far
2011-05-20 10:17:06,155 - INFO - Processed 121300000 reads so far
2011-05-20 10:17:16,673 - INFO - Processed 121400000 reads so far
2011-05-20 10:17:24,934 - INFO - Processed 121500000 reads so far
2011-05-20 10:17:33,247 - INFO - Processed 121600000 reads so far
2011-05-20 10:17:41,190 - INFO - Processed 121700000 reads so far
2011-05-20 10:17:50,688 - INFO - Processed 121800000 reads so far
2011-05-20 10:17:58,722 - INFO - Processed 121900000 reads so far
2011-05-20 10:18:07,114 - INFO - Processed 122000000 reads so far
2011-05-20 10:18:15,942 - INFO - Processed 122100000 reads so far
2011-05-20 10:18:28,279 - INFO - Processed 122200000 reads so far
2011-05-20 10:18:42,536 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:122990594-143010594
2011-05-20 10:18:46,778 - INFO - Processed 122300000 reads so far
2011-05-20 10:18:57,986 - INFO - Processed 122400000 reads so far
2011-05-20 10:19:08,995 - INFO - Processed 122500000 reads so far
2011-05-20 10:19:19,402 - INFO - Processed 122600000 reads so far
2011-05-20 10:19:31,492 - INFO - Processed 122700000 reads so far
2011-05-20 10:19:42,068 - INFO - Processed 122800000 reads so far
2011-05-20 10:19:51,817 - INFO - Processed 122900000 reads so far
2011-05-20 10:20:01,515 - INFO - Processed 123000000 reads so far
2011-05-20 10:20:11,823 - INFO - Processed 123100000 reads so far
2011-05-20 10:20:22,044 - INFO - Processed 123200000 reads so far
2011-05-20 10:20:30,786 - INFO - Processed 123300000 reads so far
2011-05-20 10:20:41,701 - INFO - Processed 123400000 reads so far
2011-05-20 10:20:52,880 - INFO - Processed 123500000 reads so far
2011-05-20 10:20:58,986 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:142990597-163010597
2011-05-20 10:21:02,048 - INFO - Processed 123600000 reads so far
2011-05-20 10:21:11,163 - INFO - Processed 123700000 reads so far
2011-05-20 10:21:21,911 - INFO - Processed 123800000 reads so far
2011-05-20 10:21:31,122 - INFO - Processed 123900000 reads so far
2011-05-20 10:21:41,732 - INFO - Processed 124000000 reads so far
2011-05-20 10:21:51,567 - INFO - Processed 124100000 reads so far
2011-05-20 10:21:56,398 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5_random:0-20010081
2011-05-20 10:21:56,744 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:2989974-23009974
2011-05-20 10:21:58,989 - INFO - Processed 124200000 reads so far
2011-05-20 10:22:05,796 - INFO - Processed 124300000 reads so far
2011-05-20 10:22:22,063 - INFO - Processed 124400000 reads so far
2011-05-20 10:22:33,130 - INFO - Processed 124500000 reads so far
2011-05-20 10:22:44,194 - INFO - Processed 124600000 reads so far
2011-05-20 10:22:55,737 - INFO - Processed 124700000 reads so far
2011-05-20 10:23:06,797 - INFO - Processed 124800000 reads so far
2011-05-20 10:23:17,838 - INFO - Processed 124900000 reads so far
2011-05-20 10:23:29,384 - INFO - Processed 125000000 reads so far
2011-05-20 10:23:40,627 - INFO - Processed 125100000 reads so far
2011-05-20 10:23:50,154 - INFO - Processed 125200000 reads so far
2011-05-20 10:23:59,109 - INFO - Processed 125300000 reads so far
2011-05-20 10:23:59,256 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:22989992-43009992
2011-05-20 10:24:06,875 - INFO - Processed 125400000 reads so far
2011-05-20 10:24:13,649 - INFO - Processed 125500000 reads so far
2011-05-20 10:24:20,486 - INFO - Processed 125600000 reads so far
2011-05-20 10:24:27,142 - INFO - Processed 125700000 reads so far
2011-05-20 10:24:33,816 - INFO - Processed 125800000 reads so far
2011-05-20 10:24:42,902 - INFO - Processed 125900000 reads so far
2011-05-20 10:24:51,405 - INFO - Processed 126000000 reads so far
2011-05-20 10:24:58,640 - INFO - Processed 126100000 reads so far
2011-05-20 10:25:08,598 - INFO - Processed 126200000 reads so far
2011-05-20 10:25:16,376 - INFO - Processed 126300000 reads so far
2011-05-20 10:25:25,679 - INFO - Processed 126400000 reads so far
2011-05-20 10:25:32,960 - INFO - Processed 126500000 reads so far
2011-05-20 10:25:34,287 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:42990024-63010024
2011-05-20 10:25:39,718 - INFO - Processed 126600000 reads so far
2011-05-20 10:25:49,534 - INFO - Processed 126700000 reads so far
2011-05-20 10:25:58,508 - INFO - Processed 126800000 reads so far
2011-05-20 10:26:09,666 - INFO - Processed 126900000 reads so far
2011-05-20 10:26:21,244 - INFO - Processed 127000000 reads so far
2011-05-20 10:26:33,433 - INFO - Processed 127100000 reads so far
2011-05-20 10:26:44,322 - INFO - Processed 127200000 reads so far
2011-05-20 10:26:56,546 - INFO - Processed 127300000 reads so far
2011-05-20 10:27:08,851 - INFO - Processed 127400000 reads so far
2011-05-20 10:27:20,584 - INFO - Processed 127500000 reads so far
2011-05-20 10:27:31,223 - INFO - Processed 127600000 reads so far
2011-05-20 10:27:42,861 - INFO - Processed 127700000 reads so far
2011-05-20 10:27:47,859 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:62990033-83010033
2011-05-20 10:27:54,091 - INFO - Processed 127800000 reads so far
2011-05-20 10:28:05,103 - INFO - Processed 127900000 reads so far
2011-05-20 10:28:17,355 - INFO - Processed 128000000 reads so far
2011-05-20 10:28:30,205 - INFO - Processed 128100000 reads so far
2011-05-20 10:28:41,068 - INFO - Processed 128200000 reads so far
2011-05-20 10:28:54,440 - INFO - Processed 128300000 reads so far
2011-05-20 10:29:08,127 - INFO - Processed 128400000 reads so far
2011-05-20 10:29:18,063 - INFO - Processed 128500000 reads so far
2011-05-20 10:29:28,237 - INFO - Processed 128600000 reads so far
2011-05-20 10:29:38,754 - INFO - Processed 128700000 reads so far
2011-05-20 10:29:50,281 - INFO - Processed 128800000 reads so far
2011-05-20 10:29:58,288 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:82990041-103010041
2011-05-20 10:30:00,697 - INFO - Processed 128900000 reads so far
2011-05-20 10:30:12,396 - INFO - Processed 129000000 reads so far
2011-05-20 10:30:22,159 - INFO - Processed 129100000 reads so far
2011-05-20 10:30:32,918 - INFO - Processed 129200000 reads so far
2011-05-20 10:30:43,566 - INFO - Processed 129300000 reads so far
2011-05-20 10:30:55,167 - INFO - Processed 129400000 reads so far
2011-05-20 10:31:05,281 - INFO - Processed 129500000 reads so far
2011-05-20 10:31:17,066 - INFO - Processed 129600000 reads so far
2011-05-20 10:31:29,329 - INFO - Processed 129700000 reads so far
2011-05-20 10:31:43,018 - INFO - Processed 129800000 reads so far
2011-05-20 10:31:58,290 - INFO - Processed 129900000 reads so far
2011-05-20 10:32:09,097 - INFO - Processed 130000000 reads so far
2011-05-20 10:32:20,310 - INFO - Processed 130100000 reads so far
2011-05-20 10:32:26,600 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:102990048-123010048
2011-05-20 10:32:31,082 - INFO - Processed 130200000 reads so far
2011-05-20 10:32:41,867 - INFO - Processed 130300000 reads so far
2011-05-20 10:32:52,234 - INFO - Processed 130400000 reads so far
2011-05-20 10:33:00,586 - INFO - Processed 130500000 reads so far
2011-05-20 10:33:08,943 - INFO - Processed 130600000 reads so far
2011-05-20 10:33:18,105 - INFO - Processed 130700000 reads so far
2011-05-20 10:33:28,089 - INFO - Processed 130800000 reads so far
2011-05-20 10:33:36,821 - INFO - Processed 130900000 reads so far
2011-05-20 10:33:44,522 - INFO - Processed 131000000 reads so far
2011-05-20 10:33:55,651 - INFO - Processed 131100000 reads so far
2011-05-20 10:34:04,901 - INFO - Processed 131200000 reads so far
2011-05-20 10:34:13,607 - INFO - Processed 131300000 reads so far
2011-05-20 10:34:22,779 - INFO - Processed 131400000 reads so far
2011-05-20 10:34:32,083 - INFO - Processed 131500000 reads so far
2011-05-20 10:34:43,727 - INFO - Processed 131600000 reads so far
2011-05-20 10:34:54,936 - INFO - Processed 131700000 reads so far
2011-05-20 10:35:07,122 - INFO - Processed 131800000 reads so far
2011-05-20 10:35:17,266 - INFO - Processed 131900000 reads so far
2011-05-20 10:35:28,269 - INFO - Processed 132000000 reads so far
2011-05-20 10:35:38,025 - INFO - Processed 132100000 reads so far
2011-05-20 10:35:50,140 - INFO - Processed 132200000 reads so far
2011-05-20 10:36:01,473 - INFO - Processed 132300000 reads so far
2011-05-20 10:36:12,287 - INFO - Processed 132400000 reads so far
2011-05-20 10:36:23,005 - INFO - Processed 132500000 reads so far
2011-05-20 10:36:33,491 - INFO - Processed 132600000 reads so far
2011-05-20 10:36:43,856 - INFO - Processed 132700000 reads so far
2011-05-20 10:36:44,960 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:122990049-143010049
2011-05-20 10:36:54,055 - INFO - Processed 132800000 reads so far
2011-05-20 10:37:03,798 - INFO - Processed 132900000 reads so far
2011-05-20 10:37:12,552 - INFO - Processed 133000000 reads so far
2011-05-20 10:37:23,015 - INFO - Processed 133100000 reads so far
2011-05-20 10:37:32,987 - INFO - Processed 133200000 reads so far
2011-05-20 10:37:44,158 - INFO - Processed 133300000 reads so far
2011-05-20 10:37:54,406 - INFO - Processed 133400000 reads so far
2011-05-20 10:38:04,572 - INFO - Processed 133500000 reads so far
2011-05-20 10:38:15,298 - INFO - Processed 133600000 reads so far
2011-05-20 10:38:23,562 - INFO - Processed 133700000 reads so far
2011-05-20 10:38:32,804 - INFO - Processed 133800000 reads so far
2011-05-20 10:38:41,507 - INFO - Processed 133900000 reads so far
2011-05-20 10:38:46,046 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:142990050-163010050
2011-05-20 10:38:51,668 - INFO - Processed 134000000 reads so far
2011-05-20 10:39:02,519 - INFO - Processed 134100000 reads so far
2011-05-20 10:39:10,868 - INFO - Processed 134200000 reads so far
2011-05-20 10:39:18,896 - INFO - Processed 134300000 reads so far
2011-05-20 10:39:22,955 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:2989999-23009999
2011-05-20 10:39:26,975 - INFO - Processed 134400000 reads so far
2011-05-20 10:39:37,938 - INFO - Processed 134500000 reads so far
2011-05-20 10:39:50,393 - INFO - Processed 134600000 reads so far
2011-05-20 10:39:59,212 - INFO - Processed 134700000 reads so far
2011-05-20 10:40:09,117 - INFO - Processed 134800000 reads so far
2011-05-20 10:40:23,080 - INFO - Processed 134900000 reads so far
2011-05-20 10:40:35,089 - INFO - Processed 135000000 reads so far
2011-05-20 10:40:46,262 - INFO - Processed 135100000 reads so far
2011-05-20 10:40:55,730 - INFO - Processed 135200000 reads so far
2011-05-20 10:41:07,252 - INFO - Processed 135300000 reads so far
2011-05-20 10:41:19,172 - INFO - Processed 135400000 reads so far
2011-05-20 10:41:27,215 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:22990043-43010043
2011-05-20 10:41:28,329 - INFO - Processed 135500000 reads so far
2011-05-20 10:41:37,521 - INFO - Processed 135600000 reads so far
2011-05-20 10:41:48,239 - INFO - Processed 135700000 reads so far
2011-05-20 10:42:00,653 - INFO - Processed 135800000 reads so far
2011-05-20 10:42:11,828 - INFO - Processed 135900000 reads so far
2011-05-20 10:42:23,121 - INFO - Processed 136000000 reads so far
2011-05-20 10:42:33,090 - INFO - Processed 136100000 reads so far
2011-05-20 10:42:41,838 - INFO - Processed 136200000 reads so far
2011-05-20 10:42:53,716 - INFO - Processed 136300000 reads so far
2011-05-20 10:43:03,453 - INFO - Processed 136400000 reads so far
2011-05-20 10:43:10,883 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:46347089-66367089
2011-05-20 10:43:12,613 - INFO - Processed 136500000 reads so far
2011-05-20 10:43:22,697 - INFO - Processed 136600000 reads so far
2011-05-20 10:43:31,487 - INFO - Processed 136700000 reads so far
2011-05-20 10:43:42,067 - INFO - Processed 136800000 reads so far
2011-05-20 10:43:52,963 - INFO - Processed 136900000 reads so far
2011-05-20 10:44:05,120 - INFO - Processed 137000000 reads so far
2011-05-20 10:44:14,487 - INFO - Processed 137100000 reads so far
2011-05-20 10:44:24,233 - INFO - Processed 137200000 reads so far
2011-05-20 10:44:32,493 - INFO - Processed 137300000 reads so far
2011-05-20 10:44:42,670 - INFO - Processed 137400000 reads so far
2011-05-20 10:44:56,138 - INFO - Processed 137500000 reads so far
2011-05-20 10:45:07,345 - INFO - Processed 137600000 reads so far
2011-05-20 10:45:19,118 - INFO - Processed 137700000 reads so far
2011-05-20 10:45:22,019 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:66347108-86367108
2011-05-20 10:45:29,918 - INFO - Processed 137800000 reads so far
2011-05-20 10:45:39,861 - INFO - Processed 137900000 reads so far
2011-05-20 10:45:49,989 - INFO - Processed 138000000 reads so far
2011-05-20 10:46:00,890 - INFO - Processed 138100000 reads so far
2011-05-20 10:46:11,553 - INFO - Processed 138200000 reads so far
2011-05-20 10:46:21,143 - INFO - Processed 138300000 reads so far
2011-05-20 10:46:29,857 - INFO - Processed 138400000 reads so far
2011-05-20 10:46:43,729 - INFO - Processed 138500000 reads so far
2011-05-20 10:46:53,865 - INFO - Processed 138600000 reads so far
2011-05-20 10:47:06,844 - INFO - Processed 138700000 reads so far
2011-05-20 10:47:16,807 - INFO - Processed 138800000 reads so far
2011-05-20 10:47:25,159 - INFO - Processed 138900000 reads so far
2011-05-20 10:47:33,149 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:86347111-106367111
2011-05-20 10:47:35,523 - INFO - Processed 139000000 reads so far
2011-05-20 10:47:46,418 - INFO - Processed 139100000 reads so far
2011-05-20 10:47:58,617 - INFO - Processed 139200000 reads so far
2011-05-20 10:48:10,356 - INFO - Processed 139300000 reads so far
2011-05-20 10:48:18,910 - INFO - Processed 139400000 reads so far
2011-05-20 10:48:28,162 - INFO - Processed 139500000 reads so far
2011-05-20 10:48:37,936 - INFO - Processed 139600000 reads so far
2011-05-20 10:48:46,015 - INFO - Processed 139700000 reads so far
2011-05-20 10:48:57,751 - INFO - Processed 139800000 reads so far
2011-05-20 10:49:12,216 - INFO - Processed 139900000 reads so far
2011-05-20 10:49:22,432 - INFO - Processed 140000000 reads so far
2011-05-20 10:49:32,637 - INFO - Processed 140100000 reads so far
2011-05-20 10:49:39,356 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:106347117-126367117
2011-05-20 10:49:42,028 - INFO - Processed 140200000 reads so far
2011-05-20 10:49:52,245 - INFO - Processed 140300000 reads so far
2011-05-20 10:50:01,861 - INFO - Processed 140400000 reads so far
2011-05-20 10:50:12,112 - INFO - Processed 140500000 reads so far
2011-05-20 10:50:23,337 - INFO - Processed 140600000 reads so far
2011-05-20 10:50:34,339 - INFO - Processed 140700000 reads so far
2011-05-20 10:50:41,723 - INFO - Processed 140800000 reads so far
2011-05-20 10:50:53,029 - INFO - Processed 140900000 reads so far
2011-05-20 10:51:02,366 - INFO - Processed 141000000 reads so far
2011-05-20 10:51:12,839 - INFO - Processed 141100000 reads so far
2011-05-20 10:51:21,079 - INFO - Processed 141200000 reads so far
2011-05-20 10:51:32,300 - INFO - Processed 141300000 reads so far
2011-05-20 10:51:43,522 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:126347157-146367157
2011-05-20 10:51:43,701 - INFO - Processed 141400000 reads so far
2011-05-20 10:51:54,596 - INFO - Processed 141500000 reads so far
2011-05-20 10:52:04,100 - INFO - Processed 141600000 reads so far
2011-05-20 10:52:14,673 - INFO - Processed 141700000 reads so far
2011-05-20 10:52:27,135 - INFO - Processed 141800000 reads so far
2011-05-20 10:52:37,568 - INFO - Processed 141900000 reads so far
2011-05-20 10:52:48,384 - INFO - Processed 142000000 reads so far
2011-05-20 10:52:57,717 - INFO - Processed 142100000 reads so far
2011-05-20 10:53:07,517 - INFO - Processed 142200000 reads so far
2011-05-20 10:53:16,177 - INFO - Processed 142300000 reads so far
2011-05-20 10:53:24,904 - INFO - Processed 142400000 reads so far
2011-05-20 10:53:34,443 - INFO - Processed 142500000 reads so far
2011-05-20 10:53:45,999 - INFO - Processed 142600000 reads so far
2011-05-20 10:53:53,401 - INFO - Processed 142700000 reads so far
2011-05-20 10:53:54,478 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:146347170-166367170
2011-05-20 10:54:04,857 - INFO - Processed 142800000 reads so far
2011-05-20 10:54:14,461 - INFO - Processed 142900000 reads so far
2011-05-20 10:54:26,567 - INFO - Processed 143000000 reads so far
2011-05-20 10:54:36,225 - INFO - Processed 143100000 reads so far
2011-05-20 10:54:42,220 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7_random:0-20010019
2011-05-20 10:54:43,533 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:2990025-23010025
2011-05-20 10:54:48,948 - INFO - Processed 143200000 reads so far
2011-05-20 10:54:59,097 - INFO - Processed 143300000 reads so far
2011-05-20 10:55:10,304 - INFO - Processed 143400000 reads so far
2011-05-20 10:55:19,909 - INFO - Processed 143500000 reads so far
2011-05-20 10:55:31,725 - INFO - Processed 143600000 reads so far
2011-05-20 10:55:43,444 - INFO - Processed 143700000 reads so far
2011-05-20 10:55:54,609 - INFO - Processed 143800000 reads so far
2011-05-20 10:56:05,755 - INFO - Processed 143900000 reads so far
2011-05-20 10:56:17,036 - INFO - Processed 144000000 reads so far
2011-05-20 10:56:28,825 - INFO - Processed 144100000 reads so far
2011-05-20 10:56:39,940 - INFO - Processed 144200000 reads so far
2011-05-20 10:56:50,652 - INFO - Processed 144300000 reads so far
2011-05-20 10:57:01,047 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:22990032-43010032
2011-05-20 10:57:01,342 - INFO - Processed 144400000 reads so far
2011-05-20 10:57:15,651 - INFO - Processed 144500000 reads so far
2011-05-20 10:57:26,937 - INFO - Processed 144600000 reads so far
2011-05-20 10:57:39,861 - INFO - Processed 144700000 reads so far
2011-05-20 10:57:51,115 - INFO - Processed 144800000 reads so far
2011-05-20 10:58:03,572 - INFO - Processed 144900000 reads so far
2011-05-20 10:58:14,921 - INFO - Processed 145000000 reads so far
2011-05-20 10:58:26,101 - INFO - Processed 145100000 reads so far
2011-05-20 10:58:37,411 - INFO - Processed 145200000 reads so far
2011-05-20 10:58:46,323 - INFO - Processed 145300000 reads so far
2011-05-20 10:58:55,500 - INFO - Processed 145400000 reads so far
2011-05-20 10:59:03,224 - INFO - Processed 145500000 reads so far
2011-05-20 10:59:07,930 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:42990043-63010043
2011-05-20 10:59:10,187 - INFO - Processed 145600000 reads so far
2011-05-20 10:59:20,684 - INFO - Processed 145700000 reads so far
2011-05-20 10:59:29,954 - INFO - Processed 145800000 reads so far
2011-05-20 10:59:41,031 - INFO - Processed 145900000 reads so far
2011-05-20 10:59:51,175 - INFO - Processed 146000000 reads so far
2011-05-20 11:00:02,079 - INFO - Processed 146100000 reads so far
2011-05-20 11:00:14,114 - INFO - Processed 146200000 reads so far
2011-05-20 11:00:26,406 - INFO - Processed 146300000 reads so far
2011-05-20 11:00:37,350 - INFO - Processed 146400000 reads so far
2011-05-20 11:00:48,996 - INFO - Processed 146500000 reads so far
2011-05-20 11:00:59,422 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:62990046-83010046
2011-05-20 11:01:00,428 - INFO - Processed 146600000 reads so far
2011-05-20 11:01:11,394 - INFO - Processed 146700000 reads so far
2011-05-20 11:01:19,648 - INFO - Processed 146800000 reads so far
2011-05-20 11:01:32,601 - INFO - Processed 146900000 reads so far
2011-05-20 11:01:44,279 - INFO - Processed 147000000 reads so far
2011-05-20 11:01:55,914 - INFO - Processed 147100000 reads so far
2011-05-20 11:02:04,119 - INFO - Processed 147200000 reads so far
2011-05-20 11:02:12,383 - INFO - Processed 147300000 reads so far
2011-05-20 11:02:22,977 - INFO - Processed 147400000 reads so far
2011-05-20 11:02:33,449 - INFO - Processed 147500000 reads so far
2011-05-20 11:02:45,371 - INFO - Processed 147600000 reads so far
2011-05-20 11:02:56,399 - INFO - Processed 147700000 reads so far
2011-05-20 11:03:05,644 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:82990147-103010147
2011-05-20 11:03:05,759 - INFO - Processed 147800000 reads so far
2011-05-20 11:03:17,701 - INFO - Processed 147900000 reads so far
2011-05-20 11:03:28,647 - INFO - Processed 148000000 reads so far
2011-05-20 11:03:39,556 - INFO - Processed 148100000 reads so far
2011-05-20 11:03:50,551 - INFO - Processed 148200000 reads so far
2011-05-20 11:04:00,035 - INFO - Processed 148300000 reads so far
2011-05-20 11:04:08,728 - INFO - Processed 148400000 reads so far
2011-05-20 11:04:18,382 - INFO - Processed 148500000 reads so far
2011-05-20 11:04:29,327 - INFO - Processed 148600000 reads so far
2011-05-20 11:04:41,848 - INFO - Processed 148700000 reads so far
2011-05-20 11:04:50,946 - INFO - Processed 148800000 reads so far
2011-05-20 11:05:00,962 - INFO - Processed 148900000 reads so far
2011-05-20 11:05:12,255 - INFO - Processed 149000000 reads so far
2011-05-20 11:05:14,498 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:102990150-123010150
2011-05-20 11:05:22,243 - INFO - Processed 149100000 reads so far
2011-05-20 11:05:30,373 - INFO - Processed 149200000 reads so far
2011-05-20 11:05:41,087 - INFO - Processed 149300000 reads so far
2011-05-20 11:05:52,791 - INFO - Processed 149400000 reads so far
2011-05-20 11:06:01,510 - INFO - Processed 149500000 reads so far
2011-05-20 11:06:09,946 - INFO - Processed 149600000 reads so far
2011-05-20 11:06:20,014 - INFO - Processed 149700000 reads so far
2011-05-20 11:06:30,386 - INFO - Processed 149800000 reads so far
2011-05-20 11:06:39,641 - INFO - Processed 149900000 reads so far
2011-05-20 11:06:48,694 - INFO - Processed 150000000 reads so far
2011-05-20 11:06:58,142 - INFO - Processed 150100000 reads so far
2011-05-20 11:07:08,346 - INFO - Processed 150200000 reads so far
2011-05-20 11:07:13,980 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:122990163-143010163
2011-05-20 11:07:16,447 - INFO - Processed 150300000 reads so far
2011-05-20 11:07:27,797 - INFO - Processed 150400000 reads so far
2011-05-20 11:07:37,461 - INFO - Processed 150500000 reads so far
2011-05-20 11:07:47,751 - INFO - Processed 150600000 reads so far
2011-05-20 11:07:56,145 - INFO - Processed 150700000 reads so far
2011-05-20 11:08:06,282 - INFO - Processed 150800000 reads so far
2011-05-20 11:08:13,745 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8_random:0-20010024
2011-05-20 11:08:15,907 - INFO - Processed 150900000 reads so far
2011-05-20 11:08:23,078 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:2989961-23009961
2011-05-20 11:08:23,566 - INFO - Processed 151000000 reads so far
2011-05-20 11:08:32,584 - INFO - Processed 151100000 reads so far
2011-05-20 11:08:39,102 - INFO - Processed 151200000 reads so far
2011-05-20 11:08:48,181 - INFO - Processed 151300000 reads so far
2011-05-20 11:08:55,848 - INFO - Processed 151400000 reads so far
2011-05-20 11:09:04,096 - INFO - Processed 151500000 reads so far
2011-05-20 11:09:11,888 - INFO - Processed 151600000 reads so far
2011-05-20 11:09:21,010 - INFO - Processed 151700000 reads so far
2011-05-20 11:09:27,377 - INFO - Processed 151800000 reads so far
2011-05-20 11:09:54,119 - INFO - Processed 151900000 reads so far
2011-05-20 11:10:03,022 - INFO - Processed 152000000 reads so far
2011-05-20 11:10:16,418 - INFO - Processed 152100000 reads so far
2011-05-20 11:10:35,809 - INFO - Processed 152200000 reads so far
2011-05-20 11:10:44,981 - INFO - Processed 152300000 reads so far
2011-05-20 11:11:08,428 - INFO - Processed 152400000 reads so far
2011-05-20 11:11:19,568 - INFO - Processed 152500000 reads so far
2011-05-20 11:11:38,273 - INFO - Processed 152600000 reads so far
2011-05-20 11:11:52,588 - INFO - Processed 152700000 reads so far
2011-05-20 11:12:01,698 - INFO - Processed 152800000 reads so far
2011-05-20 11:12:11,050 - INFO - Processed 152900000 reads so far
2011-05-20 11:12:19,739 - INFO - Processed 153000000 reads so far
2011-05-20 11:12:28,423 - INFO - Processed 153100000 reads so far
2011-05-20 11:12:37,295 - INFO - Processed 153200000 reads so far
2011-05-20 11:12:46,330 - INFO - Processed 153300000 reads so far
2011-05-20 11:12:54,794 - INFO - Processed 153400000 reads so far
2011-05-20 11:13:03,570 - INFO - Processed 153500000 reads so far
2011-05-20 11:13:11,341 - INFO - Processed 153600000 reads so far
2011-05-20 11:13:21,687 - INFO - Processed 153700000 reads so far
2011-05-20 11:13:30,366 - INFO - Processed 153800000 reads so far
2011-05-20 11:13:39,546 - INFO - Processed 153900000 reads so far
2011-05-20 11:13:48,520 - INFO - Processed 154000000 reads so far
2011-05-20 11:13:54,787 - INFO - Processed 154100000 reads so far
2011-05-20 11:14:00,882 - INFO - Processed 154200000 reads so far
2011-05-20 11:14:09,005 - INFO - Processed 154300000 reads so far
2011-05-20 11:14:18,760 - INFO - Processed 154400000 reads so far
2011-05-20 11:14:27,637 - INFO - Processed 154500000 reads so far
2011-05-20 11:14:37,713 - INFO - Processed 154600000 reads so far
2011-05-20 11:14:46,632 - INFO - Processed 154700000 reads so far
2011-05-20 11:14:53,275 - INFO - Processed 154800000 reads so far
2011-05-20 11:14:59,874 - INFO - Processed 154900000 reads so far
2011-05-20 11:15:08,810 - INFO - Processed 155000000 reads so far
2011-05-20 11:15:15,250 - INFO - Processed 155100000 reads so far
2011-05-20 11:15:21,462 - INFO - Processed 155200000 reads so far
2011-05-20 11:15:30,368 - INFO - Processed 155300000 reads so far
2011-05-20 11:15:37,123 - INFO - Processed 155400000 reads so far
2011-05-20 11:15:45,503 - INFO - Processed 155500000 reads so far
2011-05-20 11:15:53,939 - INFO - Processed 155600000 reads so far
2011-05-20 11:16:01,667 - INFO - Processed 155700000 reads so far
2011-05-20 11:16:08,209 - INFO - Processed 155800000 reads so far
2011-05-20 11:16:15,714 - INFO - Processed 155900000 reads so far
2011-05-20 11:16:24,440 - INFO - Processed 156000000 reads so far
2011-05-20 11:16:34,211 - INFO - Processed 156100000 reads so far
2011-05-20 11:16:41,344 - INFO - Processed 156200000 reads so far
2011-05-20 11:16:48,217 - INFO - Processed 156300000 reads so far
2011-05-20 11:16:57,836 - INFO - Processed 156400000 reads so far
2011-05-20 11:17:05,546 - INFO - Processed 156500000 reads so far
2011-05-20 11:17:12,507 - INFO - Processed 156600000 reads so far
2011-05-20 11:17:20,700 - INFO - Processed 156700000 reads so far
2011-05-20 11:17:30,623 - INFO - Processed 156800000 reads so far
2011-05-20 11:17:39,406 - INFO - Processed 156900000 reads so far
2011-05-20 11:17:48,201 - INFO - Processed 157000000 reads so far
2011-05-20 11:17:56,405 - INFO - Processed 157100000 reads so far
2011-05-20 11:18:06,362 - INFO - Processed 157200000 reads so far
2011-05-20 11:18:15,604 - INFO - Processed 157300000 reads so far
2011-05-20 11:18:24,842 - INFO - Processed 157400000 reads so far
2011-05-20 11:18:34,162 - INFO - Processed 157500000 reads so far
2011-05-20 11:19:28,840 - INFO - Processed 157600000 reads so far
2011-05-20 11:19:36,214 - INFO - Processed 157700000 reads so far
2011-05-20 11:19:44,283 - INFO - Processed 157800000 reads so far
2011-05-20 11:19:52,099 - INFO - Processed 157900000 reads so far
2011-05-20 11:20:01,267 - INFO - Processed 158000000 reads so far
2011-05-20 11:20:08,940 - INFO - Processed 158100000 reads so far
2011-05-20 11:20:16,193 - INFO - Processed 158200000 reads so far
2011-05-20 11:20:24,962 - INFO - Processed 158300000 reads so far
2011-05-20 11:20:35,598 - INFO - Processed 158400000 reads so far
2011-05-20 11:20:43,553 - INFO - Processed 158500000 reads so far
2011-05-20 11:20:55,024 - INFO - Processed 158600000 reads so far
2011-05-20 11:21:07,957 - INFO - Processed 158700000 reads so far
2011-05-20 11:21:19,168 - INFO - Processed 158800000 reads so far
2011-05-20 11:21:31,093 - INFO - Processed 158900000 reads so far
2011-05-20 11:21:43,367 - INFO - Processed 159000000 reads so far
2011-05-20 11:21:55,822 - INFO - Processed 159100000 reads so far
2011-05-20 11:22:06,922 - INFO - Processed 159200000 reads so far
2011-05-20 11:22:18,804 - INFO - Processed 159300000 reads so far
2011-05-20 11:22:31,062 - INFO - Processed 159400000 reads so far
2011-05-20 11:22:42,680 - INFO - Processed 159500000 reads so far
2011-05-20 11:22:52,913 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:22989986-43009986
2011-05-20 11:22:54,425 - INFO - Processed 159600000 reads so far
2011-05-20 11:23:04,691 - INFO - Processed 159700000 reads so far
2011-05-20 11:23:17,221 - INFO - Processed 159800000 reads so far
2011-05-20 11:23:28,363 - INFO - Processed 159900000 reads so far
2011-05-20 11:23:39,550 - INFO - Processed 160000000 reads so far
2011-05-20 11:23:50,690 - INFO - Processed 160100000 reads so far
2011-05-20 11:24:01,393 - INFO - Processed 160200000 reads so far
2011-05-20 11:24:11,263 - INFO - Processed 160300000 reads so far
2011-05-20 11:24:19,356 - INFO - Processed 160400000 reads so far
2011-05-20 11:24:32,277 - INFO - Processed 160500000 reads so far
2011-05-20 11:24:43,743 - INFO - Processed 160600000 reads so far
2011-05-20 11:24:55,066 - INFO - Processed 160700000 reads so far
2011-05-20 11:25:09,665 - INFO - Processed 160800000 reads so far
2011-05-20 11:25:20,905 - INFO - Processed 160900000 reads so far
2011-05-20 11:25:30,656 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:42989997-63009997
2011-05-20 11:25:41,293 - INFO - Processed 161000000 reads so far
2011-05-20 11:25:52,016 - INFO - Processed 161100000 reads so far
2011-05-20 11:26:04,741 - INFO - Processed 161200000 reads so far
2011-05-20 11:26:15,345 - INFO - Processed 161300000 reads so far
2011-05-20 11:26:25,539 - INFO - Processed 161400000 reads so far
2011-05-20 11:26:33,794 - INFO - Processed 161500000 reads so far
2011-05-20 11:26:42,440 - INFO - Processed 161600000 reads so far
2011-05-20 11:26:52,296 - INFO - Processed 161700000 reads so far
2011-05-20 11:27:01,789 - INFO - Processed 161800000 reads so far
2011-05-20 11:27:11,333 - INFO - Processed 161900000 reads so far
2011-05-20 11:27:22,028 - INFO - Processed 162000000 reads so far
2011-05-20 11:27:32,965 - INFO - Processed 162100000 reads so far
2011-05-20 11:27:41,686 - INFO - Processed 162200000 reads so far
2011-05-20 11:27:47,035 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:62990014-83010014
2011-05-20 11:27:52,099 - INFO - Processed 162300000 reads so far
2011-05-20 11:28:02,143 - INFO - Processed 162400000 reads so far
2011-05-20 11:28:12,394 - INFO - Processed 162500000 reads so far
2011-05-20 11:28:23,401 - INFO - Processed 162600000 reads so far
2011-05-20 11:28:33,036 - INFO - Processed 162700000 reads so far
2011-05-20 11:28:42,637 - INFO - Processed 162800000 reads so far
2011-05-20 11:28:50,772 - INFO - Processed 162900000 reads so far
2011-05-20 11:28:59,081 - INFO - Processed 163000000 reads so far
2011-05-20 11:29:09,788 - INFO - Processed 163100000 reads so far
2011-05-20 11:29:18,074 - INFO - Processed 163200000 reads so far
2011-05-20 11:29:28,291 - INFO - Processed 163300000 reads so far
2011-05-20 11:29:39,315 - INFO - Processed 163400000 reads so far
2011-05-20 11:29:45,224 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:82990024-103010024
2011-05-20 11:29:48,605 - INFO - Processed 163500000 reads so far
2011-05-20 11:30:01,125 - INFO - Processed 163600000 reads so far
2011-05-20 11:30:13,797 - INFO - Processed 163700000 reads so far
2011-05-20 11:30:24,599 - INFO - Processed 163800000 reads so far
2011-05-20 11:30:34,052 - INFO - Processed 163900000 reads so far
2011-05-20 11:30:45,826 - INFO - Processed 164000000 reads so far
2011-05-20 11:30:56,407 - INFO - Processed 164100000 reads so far
2011-05-20 11:31:06,768 - INFO - Processed 164200000 reads so far
2011-05-20 11:31:17,851 - INFO - Processed 164300000 reads so far
2011-05-20 11:31:30,699 - INFO - Processed 164400000 reads so far
2011-05-20 11:31:42,995 - INFO - Processed 164500000 reads so far
2011-05-20 11:31:54,724 - INFO - Processed 164600000 reads so far
2011-05-20 11:32:03,173 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:102990061-123010061
2011-05-20 11:32:04,872 - INFO - Processed 164700000 reads so far
2011-05-20 11:32:16,208 - INFO - Processed 164800000 reads so far
2011-05-20 11:32:24,846 - INFO - Processed 164900000 reads so far
2011-05-20 11:32:34,626 - INFO - Processed 165000000 reads so far
2011-05-20 11:32:42,916 - INFO - Processed 165100000 reads so far
2011-05-20 11:32:50,858 - INFO - Processed 165200000 reads so far
2011-05-20 11:33:00,311 - INFO - Processed 165300000 reads so far
2011-05-20 11:33:11,508 - INFO - Processed 165400000 reads so far
2011-05-20 11:33:20,500 - INFO - Processed 165500000 reads so far
2011-05-20 11:33:28,995 - INFO - Processed 165600000 reads so far
2011-05-20 11:33:40,849 - INFO - Processed 165700000 reads so far
2011-05-20 11:33:48,763 - INFO - Processed 165800000 reads so far
2011-05-20 11:33:59,020 - INFO - Processed 165900000 reads so far
2011-05-20 11:34:08,544 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:122990065-143010065
2011-05-20 11:34:24,747 - INFO - Processed 166000000 reads so far
2011-05-20 11:34:29,683 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9_random:0-20010011
2011-05-20 11:34:34,486 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrM:0-20010000
2011-05-20 11:34:35,847 - INFO - Processed 166100000 reads so far
2011-05-20 11:34:46,322 - INFO - Processed 166200000 reads so far
2011-05-20 11:34:51,275 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrUn_random:0-20010010
2011-05-20 11:34:55,497 - INFO - Processed 166300000 reads so far
2011-05-20 11:35:06,569 - INFO - Processed 166400000 reads so far
2011-05-20 11:35:16,001 - INFO - Processed 166500000 reads so far
2011-05-20 11:35:25,661 - INFO - Processed 166600000 reads so far
2011-05-20 11:35:34,977 - INFO - Processed 166700000 reads so far
2011-05-20 11:35:38,142 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:2990022-23010022
2011-05-20 11:35:44,774 - INFO - Processed 166800000 reads so far
2011-05-20 11:35:57,447 - INFO - Processed 166900000 reads so far
2011-05-20 11:36:10,517 - INFO - Processed 167000000 reads so far
2011-05-20 11:36:22,048 - INFO - Processed 167100000 reads so far
2011-05-20 11:36:33,567 - INFO - Processed 167200000 reads so far
2011-05-20 11:36:44,238 - INFO - Processed 167300000 reads so far
2011-05-20 11:36:55,199 - INFO - Processed 167400000 reads so far
2011-05-20 11:37:06,211 - INFO - Processed 167500000 reads so far
2011-05-20 11:37:18,010 - INFO - Processed 167600000 reads so far
2011-05-20 11:37:29,575 - INFO - Processed 167700000 reads so far
2011-05-20 11:37:42,028 - INFO - Processed 167800000 reads so far
2011-05-20 11:37:53,773 - INFO - Processed 167900000 reads so far
2011-05-20 11:38:05,045 - INFO - Processed 168000000 reads so far
2011-05-20 11:38:12,796 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:22990042-43010042
2011-05-20 11:38:17,035 - INFO - Processed 168100000 reads so far
2011-05-20 11:38:27,854 - INFO - Processed 168200000 reads so far
2011-05-20 11:38:37,873 - INFO - Processed 168300000 reads so far
2011-05-20 11:38:49,312 - INFO - Processed 168400000 reads so far
2011-05-20 11:38:59,268 - INFO - Processed 168500000 reads so far
2011-05-20 11:39:08,841 - INFO - Processed 168600000 reads so far
2011-05-20 11:39:20,029 - INFO - Processed 168700000 reads so far
2011-05-20 11:39:32,076 - INFO - Processed 168800000 reads so far
2011-05-20 11:39:43,813 - INFO - Processed 168900000 reads so far
2011-05-20 11:39:56,179 - INFO - Processed 169000000 reads so far
2011-05-20 11:40:07,767 - INFO - Processed 169100000 reads so far
2011-05-20 11:40:20,647 - INFO - Processed 169200000 reads so far
2011-05-20 11:40:33,420 - INFO - Processed 169300000 reads so far
2011-05-20 11:40:47,573 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:42990060-63010060
2011-05-20 11:40:51,213 - INFO - Processed 169400000 reads so far
2011-05-20 11:41:02,867 - INFO - Processed 169500000 reads so far
2011-05-20 11:41:14,908 - INFO - Processed 169600000 reads so far
2011-05-20 11:41:26,513 - INFO - Processed 169700000 reads so far
2011-05-20 11:41:37,509 - INFO - Processed 169800000 reads so far
2011-05-20 11:41:48,202 - INFO - Processed 169900000 reads so far
2011-05-20 11:41:59,366 - INFO - Processed 170000000 reads so far
2011-05-20 11:42:10,769 - INFO - Processed 170100000 reads so far
2011-05-20 11:42:22,143 - INFO - Processed 170200000 reads so far
2011-05-20 11:42:33,601 - INFO - Processed 170300000 reads so far
2011-05-20 11:42:45,014 - INFO - Processed 170400000 reads so far
2011-05-20 11:42:56,471 - INFO - Processed 170500000 reads so far
2011-05-20 11:43:00,699 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:62990063-83010063
2011-05-20 11:43:08,503 - INFO - Processed 170600000 reads so far
2011-05-20 11:43:19,934 - INFO - Processed 170700000 reads so far
2011-05-20 11:43:31,877 - INFO - Processed 170800000 reads so far
2011-05-20 11:43:43,464 - INFO - Processed 170900000 reads so far
2011-05-20 11:43:55,759 - INFO - Processed 171000000 reads so far
2011-05-20 11:44:07,710 - INFO - Processed 171100000 reads so far
2011-05-20 11:44:18,042 - INFO - Processed 171200000 reads so far
2011-05-20 11:44:28,769 - INFO - Processed 171300000 reads so far
2011-05-20 11:44:39,136 - INFO - Processed 171400000 reads so far
2011-05-20 11:44:51,700 - INFO - Processed 171500000 reads so far
2011-05-20 11:45:03,074 - INFO - Processed 171600000 reads so far
2011-05-20 11:45:12,389 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:82990074-103010074
2011-05-20 11:45:14,587 - INFO - Processed 171700000 reads so far
2011-05-20 11:45:27,117 - INFO - Processed 171800000 reads so far
2011-05-20 11:45:37,917 - INFO - Processed 171900000 reads so far
2011-05-20 11:45:48,751 - INFO - Processed 172000000 reads so far
2011-05-20 11:45:59,314 - INFO - Processed 172100000 reads so far
2011-05-20 11:46:10,134 - INFO - Processed 172200000 reads so far
2011-05-20 11:46:20,243 - INFO - Processed 172300000 reads so far
2011-05-20 11:46:34,233 - INFO - Processed 172400000 reads so far
2011-05-20 11:46:45,282 - INFO - Processed 172500000 reads so far
2011-05-20 11:46:54,575 - INFO - Processed 172600000 reads so far
2011-05-20 11:47:06,397 - INFO - Processed 172700000 reads so far
2011-05-20 11:47:17,457 - INFO - Processed 172800000 reads so far
2011-05-20 11:47:20,109 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:102990075-123010075
2011-05-20 11:47:28,533 - INFO - Processed 172900000 reads so far
2011-05-20 11:47:42,414 - INFO - Processed 173000000 reads so far
2011-05-20 11:47:53,981 - INFO - Processed 173100000 reads so far
2011-05-20 11:48:05,856 - INFO - Processed 173200000 reads so far
2011-05-20 11:48:19,409 - INFO - Processed 173300000 reads so far
2011-05-20 11:48:30,718 - INFO - Processed 173400000 reads so far
2011-05-20 11:48:42,002 - INFO - Processed 173500000 reads so far
2011-05-20 11:48:53,320 - INFO - Processed 173600000 reads so far
2011-05-20 11:49:05,797 - INFO - Processed 173700000 reads so far
2011-05-20 11:49:16,752 - INFO - Processed 173800000 reads so far
2011-05-20 11:49:26,329 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:122990142-143010142
2011-05-20 11:49:28,472 - INFO - Processed 173900000 reads so far
2011-05-20 11:49:39,777 - INFO - Processed 174000000 reads so far
2011-05-20 11:49:52,694 - INFO - Processed 174100000 reads so far
2011-05-20 11:50:03,503 - INFO - Processed 174200000 reads so far
2011-05-20 11:50:14,338 - INFO - Processed 174300000 reads so far
2011-05-20 11:50:25,245 - INFO - Processed 174400000 reads so far
2011-05-20 11:50:35,935 - INFO - Processed 174500000 reads so far
2011-05-20 11:50:47,718 - INFO - Processed 174600000 reads so far
2011-05-20 11:50:58,449 - INFO - Processed 174700000 reads so far
2011-05-20 11:51:09,579 - INFO - Processed 174800000 reads so far
2011-05-20 11:51:21,238 - INFO - Processed 174900000 reads so far
2011-05-20 11:51:33,369 - INFO - Processed 175000000 reads so far
2011-05-20 11:51:43,023 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:142990173-163010173
2011-05-20 11:51:44,330 - INFO - Processed 175100000 reads so far
2011-05-20 11:51:58,367 - INFO - Processed 175200000 reads so far
2011-05-20 11:52:10,799 - INFO - Processed 175300000 reads so far
2011-05-20 11:52:22,589 - INFO - Processed 175400000 reads so far
2011-05-20 11:52:34,912 - INFO - Processed 175500000 reads so far
2011-05-20 11:52:48,346 - INFO - Processed 175600000 reads so far
2011-05-20 11:53:01,968 - INFO - Processed 175700000 reads so far
2011-05-20 11:53:15,956 - INFO - Processed 175800000 reads so far
2011-05-20 11:53:27,053 - INFO - Processed 175900000 reads so far
2011-05-20 11:53:39,029 - INFO - Processed 176000000 reads so far
2011-05-20 11:53:51,639 - INFO - Processed 176100000 reads so far
2011-05-20 11:54:04,258 - INFO - Processed 176200000 reads so far
2011-05-20 11:54:04,522 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:162990175-183010175
2011-05-20 11:54:17,869 - INFO - Processed 176300000 reads so far
2011-05-20 11:54:29,960 - INFO - Processed 176400000 reads so far
2011-05-20 11:54:40,305 - INFO - Processed 176500000 reads so far
2011-05-20 11:54:43,521 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX_random:0-20010000
2011-05-20 11:54:51,173 - INFO - Processed 176600000 reads so far
2011-05-20 11:54:51,834 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY:0-20014829
2011-05-20 11:54:53,416 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:124513-20144513
2011-05-20 11:54:56,341 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:20188835-40208835
2011-05-20 11:54:58,358 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:40195576-60215576
2011-05-20 11:55:01,632 - INFO - Processed 176700000 reads so far
2011-05-20 11:55:06,602 - INFO - Processed 176800000 reads so far
2011-05-20 11:55:11,686 - INFO - Processed 176900000 reads so far
2011-05-20 11:55:16,589 - INFO - Processed 177000000 reads so far
2011-05-20 11:55:22,822 - INFO - Processed 177100000 reads so far
2011-05-20 11:55:28,332 - INFO - Processed 177200000 reads so far
2011-05-20 11:55:33,427 - INFO - Processed 177300000 reads so far
2011-05-20 11:55:39,021 - INFO - Processed 177400000 reads so far
2011-05-20 11:55:44,298 - INFO - Processed 177500000 reads so far
2011-05-20 11:55:49,629 - INFO - Processed 177600000 reads so far
2011-05-20 11:55:54,841 - INFO - Processed 177700000 reads so far
2011-05-20 11:56:00,803 - INFO - Processed 177800000 reads so far
2011-05-20 11:56:06,599 - INFO - Processed 177900000 reads so far
2011-05-20 11:56:13,545 - INFO - Processed 178000000 reads so far
2011-05-20 11:56:18,297 - INFO - Processed 178100000 reads so far
2011-05-20 11:56:23,919 - INFO - Processed 178200000 reads so far
2011-05-20 11:56:29,378 - INFO - Processed 178300000 reads so far
2011-05-20 11:56:34,572 - INFO - Processed 178400000 reads so far
2011-05-20 11:56:40,308 - INFO - Processed 178500000 reads so far
2011-05-20 11:56:46,820 - INFO - Processed 178600000 reads so far
2011-05-20 11:56:54,579 - INFO - Processed 178700000 reads so far
2011-05-20 11:57:00,137 - INFO - Processed 178800000 reads so far
2011-05-20 11:57:04,959 - INFO - Processed 178900000 reads so far
2011-05-20 11:57:08,005 - INFO - Finished loading data. Outputting QC metrics
2011-05-20 11:57:36,199 - INFO - Finished outputting QC metrics
2011-05-20 11:57:36,317 - INFO - Finished generating QC metrics