2011-05-19 22:01:29,807 - INFO - Generating QC metrics for BAM File ['WTCHG_13406.bam']
2011-05-19 22:01:29,807 - INFO - Output will go to WTCHG_13406.qc.txt.tmp
2011-05-19 22:01:29,808 - INFO - Reading GC Map from file /data/Genomes/gcMap/Mouse37.gcMap.gz
2011-05-19 22:04:33,088 - INFO - Finished reading GC Map
2011-05-19 22:04:33,088 - INFO - Reading CDS from exon definition file /data/Genomes/annotation/Mouse37.refGene.txt.gz
2011-05-19 22:04:36,014 - INFO - Read 382138 exons (33804740 nucleotides) for 32 chromosomes
2011-05-19 22:04:36,015 - INFO - Computing coverage cut-off
2011-05-19 22:04:36,015 - INFO - Retrieving BAM file coverage info from samtools pileup
2011-05-19 22:04:40,603 - INFO - Processed 1000000 pile-up sites
2011-05-19 22:04:45,232 - INFO - Processed 2000000 pile-up sites
2011-05-19 22:04:49,834 - INFO - Processed 3000000 pile-up sites
2011-05-19 22:04:54,481 - INFO - Processed 4000000 pile-up sites
2011-05-19 22:04:59,299 - INFO - Processed 5000000 pile-up sites
2011-05-19 22:05:04,032 - INFO - Processed 6000000 pile-up sites
2011-05-19 22:05:09,418 - INFO - Processed 7000000 pile-up sites
2011-05-19 22:05:14,123 - INFO - Processed 8000000 pile-up sites
2011-05-19 22:05:18,867 - INFO - Processed 9000000 pile-up sites
2011-05-19 22:05:24,063 - INFO - Processed 10000000 pile-up sites
2011-05-19 22:05:28,651 - INFO - Processed 11000000 pile-up sites
2011-05-19 22:05:32,934 - INFO - Processed 12000000 pile-up sites
2011-05-19 22:05:37,695 - INFO - Processed 13000000 pile-up sites
2011-05-19 22:05:42,044 - INFO - Processed 14000000 pile-up sites
2011-05-19 22:05:45,902 - INFO - Processed 15000000 pile-up sites
2011-05-19 22:05:49,788 - INFO - Processed 16000000 pile-up sites
2011-05-19 22:05:54,229 - INFO - Processed 17000000 pile-up sites
2011-05-19 22:05:58,119 - INFO - Processed 18000000 pile-up sites
2011-05-19 22:06:01,949 - INFO - Processed 19000000 pile-up sites
2011-05-19 22:06:05,303 - INFO - Processed 20000000 pile-up sites
2011-05-19 22:06:09,440 - INFO - Processed 21000000 pile-up sites
2011-05-19 22:06:12,572 - INFO - Processed 22000000 pile-up sites
2011-05-19 22:06:15,012 - INFO - Processed 23000000 pile-up sites
2011-05-19 22:06:17,448 - INFO - Processed 24000000 pile-up sites
2011-05-19 22:06:19,867 - INFO - Processed 25000000 pile-up sites
2011-05-19 22:06:22,287 - INFO - Processed 26000000 pile-up sites
2011-05-19 22:06:28,517 - INFO - Processed 27000000 pile-up sites
2011-05-19 22:06:33,194 - INFO - Processed 28000000 pile-up sites
2011-05-19 22:06:37,867 - INFO - Processed 29000000 pile-up sites
2011-05-19 22:06:42,010 - INFO - Processed 30000000 pile-up sites
2011-05-19 22:06:45,761 - INFO - Processed 31000000 pile-up sites
2011-05-19 22:06:48,206 - INFO - Processed 32000000 pile-up sites
2011-05-19 22:06:48,463 - INFO - Finished processing pile-up on 32102686 sites (200000001 nucleotides)
2011-05-19 22:06:48,463 - INFO - Coverage cut-off value is 31
2011-05-19 22:06:48,463 - INFO - Loading data into QC data manager
2011-05-19 22:06:48,693 - INFO - Reading data from BAM file WTCHG_13406.bam. All reads in file will be read
2011-05-19 22:06:48,736 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:2990032-23010032
2011-05-19 22:06:59,637 - INFO - Processed 100000 reads so far
2011-05-19 22:07:08,672 - INFO - Processed 200000 reads so far
2011-05-19 22:07:17,442 - INFO - Processed 300000 reads so far
2011-05-19 22:07:27,321 - INFO - Processed 400000 reads so far
2011-05-19 22:07:37,693 - INFO - Processed 500000 reads so far
2011-05-19 22:07:47,704 - INFO - Processed 600000 reads so far
2011-05-19 22:07:58,813 - INFO - Processed 700000 reads so far
2011-05-19 22:08:10,150 - INFO - Processed 800000 reads so far
2011-05-19 22:08:21,209 - INFO - Processed 900000 reads so far
2011-05-19 22:08:32,426 - INFO - Processed 1000000 reads so far
2011-05-19 22:08:43,535 - INFO - Processed 1100000 reads so far
2011-05-19 22:08:54,647 - INFO - Processed 1200000 reads so far
2011-05-19 22:08:59,994 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:22990045-43010045
2011-05-19 22:09:06,110 - INFO - Processed 1300000 reads so far
2011-05-19 22:09:22,041 - INFO - Processed 1400000 reads so far
2011-05-19 22:09:31,068 - INFO - Processed 1500000 reads so far
2011-05-19 22:09:41,799 - INFO - Processed 1600000 reads so far
2011-05-19 22:09:49,616 - INFO - Processed 1700000 reads so far
2011-05-19 22:09:59,767 - INFO - Processed 1800000 reads so far
2011-05-19 22:10:07,359 - INFO - Processed 1900000 reads so far
2011-05-19 22:10:16,308 - INFO - Processed 2000000 reads so far
2011-05-19 22:10:24,788 - INFO - Processed 2100000 reads so far
2011-05-19 22:10:33,979 - INFO - Processed 2200000 reads so far
2011-05-19 22:10:43,219 - INFO - Processed 2300000 reads so far
2011-05-19 22:10:51,935 - INFO - Processed 2400000 reads so far
2011-05-19 22:10:56,458 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:42990058-63010058
2011-05-19 22:11:02,795 - INFO - Processed 2500000 reads so far
2011-05-19 22:11:13,334 - INFO - Processed 2600000 reads so far
2011-05-19 22:11:24,610 - INFO - Processed 2700000 reads so far
2011-05-19 22:11:35,974 - INFO - Processed 2800000 reads so far
2011-05-19 22:11:48,935 - INFO - Processed 2900000 reads so far
2011-05-19 22:12:00,501 - INFO - Processed 3000000 reads so far
2011-05-19 22:12:11,748 - INFO - Processed 3100000 reads so far
2011-05-19 22:12:25,047 - INFO - Processed 3200000 reads so far
2011-05-19 22:12:36,638 - INFO - Processed 3300000 reads so far
2011-05-19 22:12:45,189 - INFO - Processed 3400000 reads so far
2011-05-19 22:12:54,212 - INFO - Processed 3500000 reads so far
2011-05-19 22:13:05,454 - INFO - Processed 3600000 reads so far
2011-05-19 22:13:14,417 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:62990132-83010132
2011-05-19 22:13:21,380 - INFO - Processed 3700000 reads so far
2011-05-19 22:13:32,628 - INFO - Processed 3800000 reads so far
2011-05-19 22:13:43,886 - INFO - Processed 3900000 reads so far
2011-05-19 22:13:55,648 - INFO - Processed 4000000 reads so far
2011-05-19 22:14:06,876 - INFO - Processed 4100000 reads so far
2011-05-19 22:14:18,125 - INFO - Processed 4200000 reads so far
2011-05-19 22:14:29,442 - INFO - Processed 4300000 reads so far
2011-05-19 22:14:40,767 - INFO - Processed 4400000 reads so far
2011-05-19 22:14:52,220 - INFO - Processed 4500000 reads so far
2011-05-19 22:15:02,033 - INFO - Processed 4600000 reads so far
2011-05-19 22:15:14,233 - INFO - Processed 4700000 reads so far
2011-05-19 22:15:22,702 - INFO - Processed 4800000 reads so far
2011-05-19 22:15:30,358 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:82990138-103010138
2011-05-19 22:15:31,164 - INFO - Processed 4900000 reads so far
2011-05-19 22:15:38,747 - INFO - Processed 5000000 reads so far
2011-05-19 22:15:48,687 - INFO - Processed 5100000 reads so far
2011-05-19 22:15:56,931 - INFO - Processed 5200000 reads so far
2011-05-19 22:16:04,780 - INFO - Processed 5300000 reads so far
2011-05-19 22:16:13,405 - INFO - Processed 5400000 reads so far
2011-05-19 22:16:22,663 - INFO - Processed 5500000 reads so far
2011-05-19 22:16:32,705 - INFO - Processed 5600000 reads so far
2011-05-19 22:16:44,711 - INFO - Processed 5700000 reads so far
2011-05-19 22:16:55,620 - INFO - Processed 5800000 reads so far
2011-05-19 22:17:04,072 - INFO - Processed 5900000 reads so far
2011-05-19 22:17:12,213 - INFO - Processed 6000000 reads so far
2011-05-19 22:17:23,078 - INFO - Processed 6100000 reads so far
2011-05-19 22:17:25,186 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:102990161-123010161
2011-05-19 22:17:36,249 - INFO - Processed 6200000 reads so far
2011-05-19 22:17:47,791 - INFO - Processed 6300000 reads so far
2011-05-19 22:17:59,271 - INFO - Processed 6400000 reads so far
2011-05-19 22:18:11,917 - INFO - Processed 6500000 reads so far
2011-05-19 22:18:23,667 - INFO - Processed 6600000 reads so far
2011-05-19 22:18:35,371 - INFO - Processed 6700000 reads so far
2011-05-19 22:18:49,038 - INFO - Processed 6800000 reads so far
2011-05-19 22:19:01,922 - INFO - Processed 6900000 reads so far
2011-05-19 22:19:15,190 - INFO - Processed 7000000 reads so far
2011-05-19 22:19:26,392 - INFO - Processed 7100000 reads so far
2011-05-19 22:19:38,585 - INFO - Processed 7200000 reads so far
2011-05-19 22:19:48,600 - INFO - Processed 7300000 reads so far
2011-05-19 22:19:49,332 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:122990174-143010174
2011-05-19 22:20:00,114 - INFO - Processed 7400000 reads so far
2011-05-19 22:20:11,422 - INFO - Processed 7500000 reads so far
2011-05-19 22:20:23,261 - INFO - Processed 7600000 reads so far
2011-05-19 22:20:32,533 - INFO - Processed 7700000 reads so far
2011-05-19 22:20:35,633 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:2990003-23010003
2011-05-19 22:20:43,321 - INFO - Processed 7800000 reads so far
2011-05-19 22:20:51,588 - INFO - Processed 7900000 reads so far
2011-05-19 22:20:59,824 - INFO - Processed 8000000 reads so far
2011-05-19 22:21:09,598 - INFO - Processed 8100000 reads so far
2011-05-19 22:21:20,142 - INFO - Processed 8200000 reads so far
2011-05-19 22:21:29,388 - INFO - Processed 8300000 reads so far
2011-05-19 22:21:37,176 - INFO - Processed 8400000 reads so far
2011-05-19 22:21:48,125 - INFO - Processed 8500000 reads so far
2011-05-19 22:21:56,738 - INFO - Processed 8600000 reads so far
2011-05-19 22:22:05,626 - INFO - Processed 8700000 reads so far
2011-05-19 22:22:14,936 - INFO - Processed 8800000 reads so far
2011-05-19 22:22:23,908 - INFO - Processed 8900000 reads so far
2011-05-19 22:22:31,283 - INFO - Processed 9000000 reads so far
2011-05-19 22:22:42,580 - INFO - Processed 9100000 reads so far
2011-05-19 22:22:51,435 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:22990007-43010007
2011-05-19 22:22:54,046 - INFO - Processed 9200000 reads so far
2011-05-19 22:23:04,825 - INFO - Processed 9300000 reads so far
2011-05-19 22:23:16,949 - INFO - Processed 9400000 reads so far
2011-05-19 22:23:27,840 - INFO - Processed 9500000 reads so far
2011-05-19 22:23:38,691 - INFO - Processed 9600000 reads so far
2011-05-19 22:23:48,577 - INFO - Processed 9700000 reads so far
2011-05-19 22:24:05,075 - INFO - Processed 9800000 reads so far
2011-05-19 22:24:14,776 - INFO - Processed 9900000 reads so far
2011-05-19 22:24:23,828 - INFO - Processed 10000000 reads so far
2011-05-19 22:24:32,284 - INFO - Processed 10100000 reads so far
2011-05-19 22:24:41,945 - INFO - Processed 10200000 reads so far
2011-05-19 22:24:50,336 - INFO - Processed 10300000 reads so far
2011-05-19 22:24:57,296 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:42990030-63010030
2011-05-19 22:25:00,503 - INFO - Processed 10400000 reads so far
2011-05-19 22:25:11,591 - INFO - Processed 10500000 reads so far
2011-05-19 22:25:22,579 - INFO - Processed 10600000 reads so far
2011-05-19 22:25:34,039 - INFO - Processed 10700000 reads so far
2011-05-19 22:25:46,258 - INFO - Processed 10800000 reads so far
2011-05-19 22:25:59,661 - INFO - Processed 10900000 reads so far
2011-05-19 22:26:11,264 - INFO - Processed 11000000 reads so far
2011-05-19 22:26:22,709 - INFO - Processed 11100000 reads so far
2011-05-19 22:26:34,047 - INFO - Processed 11200000 reads so far
2011-05-19 22:26:45,341 - INFO - Processed 11300000 reads so far
2011-05-19 22:26:54,325 - INFO - Processed 11400000 reads so far
2011-05-19 22:27:02,516 - INFO - Processed 11500000 reads so far
2011-05-19 22:27:13,838 - INFO - Processed 11600000 reads so far
2011-05-19 22:27:19,473 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:62990032-83010032
2011-05-19 22:27:22,014 - INFO - Processed 11700000 reads so far
2011-05-19 22:27:31,021 - INFO - Processed 11800000 reads so far
2011-05-19 22:27:42,578 - INFO - Processed 11900000 reads so far
2011-05-19 22:27:52,559 - INFO - Processed 12000000 reads so far
2011-05-19 22:28:01,114 - INFO - Processed 12100000 reads so far
2011-05-19 22:28:11,155 - INFO - Processed 12200000 reads so far
2011-05-19 22:28:20,300 - INFO - Processed 12300000 reads so far
2011-05-19 22:28:29,731 - INFO - Processed 12400000 reads so far
2011-05-19 22:28:38,098 - INFO - Processed 12500000 reads so far
2011-05-19 22:28:47,510 - INFO - Processed 12600000 reads so far
2011-05-19 22:29:00,784 - INFO - Processed 12700000 reads so far
2011-05-19 22:29:12,626 - INFO - Processed 12800000 reads so far
2011-05-19 22:29:23,955 - INFO - Processed 12900000 reads so far
2011-05-19 22:29:30,126 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:82990038-103010038
2011-05-19 22:29:38,120 - INFO - Processed 13000000 reads so far
2011-05-19 22:29:49,266 - INFO - Processed 13100000 reads so far
2011-05-19 22:30:00,940 - INFO - Processed 13200000 reads so far
2011-05-19 22:30:12,030 - INFO - Processed 13300000 reads so far
2011-05-19 22:30:20,585 - INFO - Processed 13400000 reads so far
2011-05-19 22:30:30,047 - INFO - Processed 13500000 reads so far
2011-05-19 22:30:38,021 - INFO - Processed 13600000 reads so far
2011-05-19 22:30:48,241 - INFO - Processed 13700000 reads so far
2011-05-19 22:31:00,163 - INFO - Processed 13800000 reads so far
2011-05-19 22:31:17,158 - INFO - Processed 13900000 reads so far
2011-05-19 22:31:29,339 - INFO - Processed 14000000 reads so far
2011-05-19 22:31:41,981 - INFO - Processed 14100000 reads so far
2011-05-19 22:31:52,441 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:102990050-123010050
2011-05-19 22:31:53,856 - INFO - Processed 14200000 reads so far
2011-05-19 22:32:04,057 - INFO - Processed 14300000 reads so far
2011-05-19 22:32:13,456 - INFO - Processed 14400000 reads so far
2011-05-19 22:32:22,580 - INFO - Processed 14500000 reads so far
2011-05-19 22:32:33,985 - INFO - Processed 14600000 reads so far
2011-05-19 22:32:42,431 - INFO - Processed 14700000 reads so far
2011-05-19 22:32:51,162 - INFO - Processed 14800000 reads so far
2011-05-19 22:33:00,720 - INFO - Processed 14900000 reads so far
2011-05-19 22:33:09,718 - INFO - Processed 15000000 reads so far
2011-05-19 22:33:19,087 - INFO - Processed 15100000 reads so far
2011-05-19 22:33:28,675 - INFO - Processed 15200000 reads so far
2011-05-19 22:33:38,013 - INFO - Processed 15300000 reads so far
2011-05-19 22:33:50,311 - INFO - Processed 15400000 reads so far
2011-05-19 22:33:52,350 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:2990037-23010037
2011-05-19 22:34:00,747 - INFO - Processed 15500000 reads so far
2011-05-19 22:34:11,125 - INFO - Processed 15600000 reads so far
2011-05-19 22:34:22,685 - INFO - Processed 15700000 reads so far
2011-05-19 22:34:34,169 - INFO - Processed 15800000 reads so far
2011-05-19 22:34:45,931 - INFO - Processed 15900000 reads so far
2011-05-19 22:34:57,908 - INFO - Processed 16000000 reads so far
2011-05-19 22:35:09,220 - INFO - Processed 16100000 reads so far
2011-05-19 22:35:21,359 - INFO - Processed 16200000 reads so far
2011-05-19 22:35:34,621 - INFO - Processed 16300000 reads so far
2011-05-19 22:35:42,665 - INFO - Processed 16400000 reads so far
2011-05-19 22:35:52,789 - INFO - Processed 16500000 reads so far
2011-05-19 22:36:05,104 - INFO - Processed 16600000 reads so far
2011-05-19 22:36:13,910 - INFO - Processed 16700000 reads so far
2011-05-19 22:36:26,317 - INFO - Processed 16800000 reads so far
2011-05-19 22:36:28,695 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:22990042-43010042
2011-05-19 22:36:39,134 - INFO - Processed 16900000 reads so far
2011-05-19 22:36:51,077 - INFO - Processed 17000000 reads so far
2011-05-19 22:37:04,376 - INFO - Processed 17100000 reads so far
2011-05-19 22:37:15,696 - INFO - Processed 17200000 reads so far
2011-05-19 22:37:28,407 - INFO - Processed 17300000 reads so far
2011-05-19 22:37:39,958 - INFO - Processed 17400000 reads so far
2011-05-19 22:37:51,232 - INFO - Processed 17500000 reads so far
2011-05-19 22:37:59,810 - INFO - Processed 17600000 reads so far
2011-05-19 22:38:08,806 - INFO - Processed 17700000 reads so far
2011-05-19 22:38:22,374 - INFO - Processed 17800000 reads so far
2011-05-19 22:38:33,441 - INFO - Processed 17900000 reads so far
2011-05-19 22:38:41,864 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:42990053-63010053
2011-05-19 22:38:44,827 - INFO - Processed 18000000 reads so far
2011-05-19 22:38:58,099 - INFO - Processed 18100000 reads so far
2011-05-19 22:39:09,874 - INFO - Processed 18200000 reads so far
2011-05-19 22:39:20,795 - INFO - Processed 18300000 reads so far
2011-05-19 22:39:30,586 - INFO - Processed 18400000 reads so far
2011-05-19 22:39:41,104 - INFO - Processed 18500000 reads so far
2011-05-19 22:39:50,046 - INFO - Processed 18600000 reads so far
2011-05-19 22:40:00,516 - INFO - Processed 18700000 reads so far
2011-05-19 22:40:11,983 - INFO - Processed 18800000 reads so far
2011-05-19 22:40:22,938 - INFO - Processed 18900000 reads so far
2011-05-19 22:40:32,841 - INFO - Processed 19000000 reads so far
2011-05-19 22:40:42,728 - INFO - Processed 19100000 reads so far
2011-05-19 22:40:44,748 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:62990058-83010058
2011-05-19 22:40:53,967 - INFO - Processed 19200000 reads so far
2011-05-19 22:41:05,080 - INFO - Processed 19300000 reads so far
2011-05-19 22:41:15,599 - INFO - Processed 19400000 reads so far
2011-05-19 22:41:27,942 - INFO - Processed 19500000 reads so far
2011-05-19 22:41:36,710 - INFO - Processed 19600000 reads so far
2011-05-19 22:41:46,095 - INFO - Processed 19700000 reads so far
2011-05-19 22:41:56,314 - INFO - Processed 19800000 reads so far
2011-05-19 22:42:06,432 - INFO - Processed 19900000 reads so far
2011-05-19 22:42:16,328 - INFO - Processed 20000000 reads so far
2011-05-19 22:42:24,970 - INFO - Processed 20100000 reads so far
2011-05-19 22:42:34,890 - INFO - Processed 20200000 reads so far
2011-05-19 22:42:45,106 - INFO - Processed 20300000 reads so far
2011-05-19 22:42:47,799 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:82990075-103010075
2011-05-19 22:42:55,872 - INFO - Processed 20400000 reads so far
2011-05-19 22:43:06,418 - INFO - Processed 20500000 reads so far
2011-05-19 22:43:15,908 - INFO - Processed 20600000 reads so far
2011-05-19 22:43:26,915 - INFO - Processed 20700000 reads so far
2011-05-19 22:43:36,410 - INFO - Processed 20800000 reads so far
2011-05-19 22:43:45,711 - INFO - Processed 20900000 reads so far
2011-05-19 22:43:56,907 - INFO - Processed 21000000 reads so far
2011-05-19 22:44:07,195 - INFO - Processed 21100000 reads so far
2011-05-19 22:44:17,751 - INFO - Processed 21200000 reads so far
2011-05-19 22:44:27,751 - INFO - Processed 21300000 reads so far
2011-05-19 22:44:36,676 - INFO - Processed 21400000 reads so far
2011-05-19 22:44:45,822 - INFO - Processed 21500000 reads so far
2011-05-19 22:44:47,693 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:102990127-123010127
2011-05-19 22:44:55,762 - INFO - Processed 21600000 reads so far
2011-05-19 22:45:15,545 - INFO - Processed 21700000 reads so far
2011-05-19 22:45:25,285 - INFO - Processed 21800000 reads so far
2011-05-19 22:45:36,580 - INFO - Processed 21900000 reads so far
2011-05-19 22:45:45,892 - INFO - Processed 22000000 reads so far
2011-05-19 22:45:54,515 - INFO - Processed 22100000 reads so far
2011-05-19 22:46:04,123 - INFO - Processed 22200000 reads so far
2011-05-19 22:46:19,534 - INFO - Processed 22300000 reads so far
2011-05-19 22:46:30,819 - INFO - Processed 22400000 reads so far
2011-05-19 22:46:43,547 - INFO - Processed 22500000 reads so far
2011-05-19 22:46:54,480 - INFO - Processed 22600000 reads so far
2011-05-19 22:47:06,130 - INFO - Processed 22700000 reads so far
2011-05-19 22:47:10,300 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:2989998-23009998
2011-05-19 22:47:17,464 - INFO - Processed 22800000 reads so far
2011-05-19 22:47:29,045 - INFO - Processed 22900000 reads so far
2011-05-19 22:47:39,618 - INFO - Processed 23000000 reads so far
2011-05-19 22:47:51,216 - INFO - Processed 23100000 reads so far
2011-05-19 22:48:00,617 - INFO - Processed 23200000 reads so far
2011-05-19 22:48:13,050 - INFO - Processed 23300000 reads so far
2011-05-19 22:48:24,243 - INFO - Processed 23400000 reads so far
2011-05-19 22:48:33,761 - INFO - Processed 23500000 reads so far
2011-05-19 22:48:47,030 - INFO - Processed 23600000 reads so far
2011-05-19 22:48:58,415 - INFO - Processed 23700000 reads so far
2011-05-19 22:49:09,101 - INFO - Processed 23800000 reads so far
2011-05-19 22:49:20,693 - INFO - Processed 23900000 reads so far
2011-05-19 22:49:21,972 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:22990007-43010007
2011-05-19 22:49:34,172 - INFO - Processed 24000000 reads so far
2011-05-19 22:49:44,063 - INFO - Processed 24100000 reads so far
2011-05-19 22:49:54,899 - INFO - Processed 24200000 reads so far
2011-05-19 22:50:05,685 - INFO - Processed 24300000 reads so far
2011-05-19 22:50:16,925 - INFO - Processed 24400000 reads so far
2011-05-19 22:50:29,501 - INFO - Processed 24500000 reads so far
2011-05-19 22:50:40,613 - INFO - Processed 24600000 reads so far
2011-05-19 22:50:49,215 - INFO - Processed 24700000 reads so far
2011-05-19 22:50:58,636 - INFO - Processed 24800000 reads so far
2011-05-19 22:51:08,337 - INFO - Processed 24900000 reads so far
2011-05-19 22:51:17,068 - INFO - Processed 25000000 reads so far
2011-05-19 22:51:25,328 - INFO - Processed 25100000 reads so far
2011-05-19 22:51:31,436 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:42990020-63010020
2011-05-19 22:51:35,847 - INFO - Processed 25200000 reads so far
2011-05-19 22:51:47,788 - INFO - Processed 25300000 reads so far
2011-05-19 22:51:58,146 - INFO - Processed 25400000 reads so far
2011-05-19 22:52:09,379 - INFO - Processed 25500000 reads so far
2011-05-19 22:52:17,174 - INFO - Processed 25600000 reads so far
2011-05-19 22:52:25,509 - INFO - Processed 25700000 reads so far
2011-05-19 22:52:35,925 - INFO - Processed 25800000 reads so far
2011-05-19 22:52:44,961 - INFO - Processed 25900000 reads so far
2011-05-19 22:52:59,173 - INFO - Processed 26000000 reads so far
2011-05-19 22:53:11,273 - INFO - Processed 26100000 reads so far
2011-05-19 22:53:22,459 - INFO - Processed 26200000 reads so far
2011-05-19 22:53:34,102 - INFO - Processed 26300000 reads so far
2011-05-19 22:53:45,420 - INFO - Processed 26400000 reads so far
2011-05-19 22:53:53,376 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:62990030-83010030
2011-05-19 22:53:56,891 - INFO - Processed 26500000 reads so far
2011-05-19 22:54:08,968 - INFO - Processed 26600000 reads so far
2011-05-19 22:54:19,949 - INFO - Processed 26700000 reads so far
2011-05-19 22:54:31,331 - INFO - Processed 26800000 reads so far
2011-05-19 22:54:43,551 - INFO - Processed 26900000 reads so far
2011-05-19 22:54:54,351 - INFO - Processed 27000000 reads so far
2011-05-19 22:55:05,204 - INFO - Processed 27100000 reads so far
2011-05-19 22:55:17,784 - INFO - Processed 27200000 reads so far
2011-05-19 22:55:29,734 - INFO - Processed 27300000 reads so far
2011-05-19 22:55:41,138 - INFO - Processed 27400000 reads so far
2011-05-19 22:55:51,412 - INFO - Processed 27500000 reads so far
2011-05-19 22:55:59,583 - INFO - Processed 27600000 reads so far
2011-05-19 22:56:08,992 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:82990046-103010046
2011-05-19 22:56:10,174 - INFO - Processed 27700000 reads so far
2011-05-19 22:56:21,511 - INFO - Processed 27800000 reads so far
2011-05-19 22:56:31,475 - INFO - Processed 27900000 reads so far
2011-05-19 22:56:40,099 - INFO - Processed 28000000 reads so far
2011-05-19 22:56:51,852 - INFO - Processed 28100000 reads so far
2011-05-19 22:57:04,232 - INFO - Processed 28200000 reads so far
2011-05-19 22:57:15,896 - INFO - Processed 28300000 reads so far
2011-05-19 22:57:27,848 - INFO - Processed 28400000 reads so far
2011-05-19 22:57:40,338 - INFO - Processed 28500000 reads so far
2011-05-19 22:57:49,888 - INFO - Processed 28600000 reads so far
2011-05-19 22:57:58,951 - INFO - Processed 28700000 reads so far
2011-05-19 22:58:09,226 - INFO - Processed 28800000 reads so far
2011-05-19 22:58:13,627 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:102990056-123010056
2011-05-19 22:58:18,695 - INFO - Processed 28900000 reads so far
2011-05-19 22:58:30,641 - INFO - Processed 29000000 reads so far
2011-05-19 22:58:42,569 - INFO - Processed 29100000 reads so far
2011-05-19 22:58:53,736 - INFO - Processed 29200000 reads so far
2011-05-19 22:59:05,252 - INFO - Processed 29300000 reads so far
2011-05-19 22:59:17,586 - INFO - Processed 29400000 reads so far
2011-05-19 22:59:28,898 - INFO - Processed 29500000 reads so far
2011-05-19 22:59:39,813 - INFO - Processed 29600000 reads so far
2011-05-19 22:59:49,505 - INFO - Processed 29700000 reads so far
2011-05-19 23:00:01,849 - INFO - Processed 29800000 reads so far
2011-05-19 23:00:10,464 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13_random:0-20010000
2011-05-19 23:00:10,803 - INFO - Processed 29900000 reads so far
2011-05-19 23:00:11,407 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:2990008-23010008
2011-05-19 23:00:19,914 - INFO - Processed 30000000 reads so far
2011-05-19 23:00:29,453 - INFO - Processed 30100000 reads so far
2011-05-19 23:00:38,079 - INFO - Processed 30200000 reads so far
2011-05-19 23:00:46,790 - INFO - Processed 30300000 reads so far
2011-05-19 23:00:57,354 - INFO - Processed 30400000 reads so far
2011-05-19 23:01:07,418 - INFO - Processed 30500000 reads so far
2011-05-19 23:01:17,288 - INFO - Processed 30600000 reads so far
2011-05-19 23:01:35,224 - INFO - Processed 30700000 reads so far
2011-05-19 23:01:48,782 - INFO - Processed 30800000 reads so far
2011-05-19 23:01:59,921 - INFO - Processed 30900000 reads so far
2011-05-19 23:02:11,163 - INFO - Processed 31000000 reads so far
2011-05-19 23:02:20,404 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:22990037-43010037
2011-05-19 23:02:21,395 - INFO - Processed 31100000 reads so far
2011-05-19 23:02:32,542 - INFO - Processed 31200000 reads so far
2011-05-19 23:02:43,558 - INFO - Processed 31300000 reads so far
2011-05-19 23:02:56,607 - INFO - Processed 31400000 reads so far
2011-05-19 23:03:09,154 - INFO - Processed 31500000 reads so far
2011-05-19 23:03:21,939 - INFO - Processed 31600000 reads so far
2011-05-19 23:03:34,696 - INFO - Processed 31700000 reads so far
2011-05-19 23:03:46,950 - INFO - Processed 31800000 reads so far
2011-05-19 23:04:00,012 - INFO - Processed 31900000 reads so far
2011-05-19 23:04:14,034 - INFO - Processed 32000000 reads so far
2011-05-19 23:04:26,947 - INFO - Processed 32100000 reads so far
2011-05-19 23:04:40,378 - INFO - Processed 32200000 reads so far
2011-05-19 23:04:52,474 - INFO - Processed 32300000 reads so far
2011-05-19 23:04:56,131 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:42990119-63010119
2011-05-19 23:05:03,586 - INFO - Processed 32400000 reads so far
2011-05-19 23:05:14,482 - INFO - Processed 32500000 reads so far
2011-05-19 23:05:26,395 - INFO - Processed 32600000 reads so far
2011-05-19 23:05:38,610 - INFO - Processed 32700000 reads so far
2011-05-19 23:05:49,940 - INFO - Processed 32800000 reads so far
2011-05-19 23:06:03,000 - INFO - Processed 32900000 reads so far
2011-05-19 23:06:15,075 - INFO - Processed 33000000 reads so far
2011-05-19 23:06:29,928 - INFO - Processed 33100000 reads so far
2011-05-19 23:06:41,513 - INFO - Processed 33200000 reads so far
2011-05-19 23:06:53,064 - INFO - Processed 33300000 reads so far
2011-05-19 23:07:05,085 - INFO - Processed 33400000 reads so far
2011-05-19 23:07:16,570 - INFO - Processed 33500000 reads so far
2011-05-19 23:07:27,948 - INFO - Processed 33600000 reads so far
2011-05-19 23:07:28,576 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:62990122-83010122
2011-05-19 23:07:40,424 - INFO - Processed 33700000 reads so far
2011-05-19 23:07:51,707 - INFO - Processed 33800000 reads so far
2011-05-19 23:08:03,118 - INFO - Processed 33900000 reads so far
2011-05-19 23:08:18,512 - INFO - Processed 34000000 reads so far
2011-05-19 23:08:29,996 - INFO - Processed 34100000 reads so far
2011-05-19 23:08:41,377 - INFO - Processed 34200000 reads so far
2011-05-19 23:08:53,292 - INFO - Processed 34300000 reads so far
2011-05-19 23:09:04,717 - INFO - Processed 34400000 reads so far
2011-05-19 23:09:15,994 - INFO - Processed 34500000 reads so far
2011-05-19 23:09:27,981 - INFO - Processed 34600000 reads so far
2011-05-19 23:09:39,211 - INFO - Processed 34700000 reads so far
2011-05-19 23:09:52,922 - INFO - Processed 34800000 reads so far
2011-05-19 23:10:01,725 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:82990149-103010149
2011-05-19 23:10:05,789 - INFO - Processed 34900000 reads so far
2011-05-19 23:10:18,167 - INFO - Processed 35000000 reads so far
2011-05-19 23:10:29,453 - INFO - Processed 35100000 reads so far
2011-05-19 23:10:41,807 - INFO - Processed 35200000 reads so far
2011-05-19 23:10:53,572 - INFO - Processed 35300000 reads so far
2011-05-19 23:11:03,011 - INFO - Processed 35400000 reads so far
2011-05-19 23:11:12,849 - INFO - Processed 35500000 reads so far
2011-05-19 23:11:22,909 - INFO - Processed 35600000 reads so far
2011-05-19 23:11:33,319 - INFO - Processed 35700000 reads so far
2011-05-19 23:11:42,963 - INFO - Processed 35800000 reads so far
2011-05-19 23:11:53,941 - INFO - Processed 35900000 reads so far
2011-05-19 23:11:57,780 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:102990191-123010191
2011-05-19 23:12:03,675 - INFO - Processed 36000000 reads so far
2011-05-19 23:12:15,927 - INFO - Processed 36100000 reads so far
2011-05-19 23:12:26,557 - INFO - Processed 36200000 reads so far
2011-05-19 23:12:34,489 - INFO - Processed 36300000 reads so far
2011-05-19 23:12:47,435 - INFO - Processed 36400000 reads so far
2011-05-19 23:12:58,437 - INFO - Processed 36500000 reads so far
2011-05-19 23:13:09,705 - INFO - Processed 36600000 reads so far
2011-05-19 23:13:19,926 - INFO - Processed 36700000 reads so far
2011-05-19 23:13:31,163 - INFO - Processed 36800000 reads so far
2011-05-19 23:13:41,828 - INFO - Processed 36900000 reads so far
2011-05-19 23:13:51,449 - INFO - Processed 37000000 reads so far
2011-05-19 23:14:02,353 - INFO - Processed 37100000 reads so far
2011-05-19 23:14:03,745 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:122990207-143010207
2011-05-19 23:14:15,424 - INFO - Processed 37200000 reads so far
2011-05-19 23:14:19,474 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:2990004-23010004
2011-05-19 23:14:26,735 - INFO - Processed 37300000 reads so far
2011-05-19 23:14:36,766 - INFO - Processed 37400000 reads so far
2011-05-19 23:14:48,553 - INFO - Processed 37500000 reads so far
2011-05-19 23:14:59,430 - INFO - Processed 37600000 reads so far
2011-05-19 23:15:10,437 - INFO - Processed 37700000 reads so far
2011-05-19 23:15:22,039 - INFO - Processed 37800000 reads so far
2011-05-19 23:15:34,609 - INFO - Processed 37900000 reads so far
2011-05-19 23:15:46,679 - INFO - Processed 38000000 reads so far
2011-05-19 23:15:55,464 - INFO - Processed 38100000 reads so far
2011-05-19 23:16:04,448 - INFO - Processed 38200000 reads so far
2011-05-19 23:16:12,618 - INFO - Processed 38300000 reads so far
2011-05-19 23:16:28,024 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:22990007-43010007
2011-05-19 23:16:28,639 - INFO - Processed 38400000 reads so far
2011-05-19 23:16:38,213 - INFO - Processed 38500000 reads so far
2011-05-19 23:16:49,568 - INFO - Processed 38600000 reads so far
2011-05-19 23:17:00,695 - INFO - Processed 38700000 reads so far
2011-05-19 23:17:10,522 - INFO - Processed 38800000 reads so far
2011-05-19 23:17:20,779 - INFO - Processed 38900000 reads so far
2011-05-19 23:17:28,315 - INFO - Processed 39000000 reads so far
2011-05-19 23:17:41,687 - INFO - Processed 39100000 reads so far
2011-05-19 23:17:51,448 - INFO - Processed 39200000 reads so far
2011-05-19 23:18:00,961 - INFO - Processed 39300000 reads so far
2011-05-19 23:18:10,775 - INFO - Processed 39400000 reads so far
2011-05-19 23:18:20,322 - INFO - Processed 39500000 reads so far
2011-05-19 23:18:29,135 - INFO - Processed 39600000 reads so far
2011-05-19 23:18:31,681 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:42990044-63010044
2011-05-19 23:18:45,948 - INFO - Processed 39700000 reads so far
2011-05-19 23:19:05,114 - INFO - Processed 39800000 reads so far
2011-05-19 23:19:17,033 - INFO - Processed 39900000 reads so far
2011-05-19 23:19:28,818 - INFO - Processed 40000000 reads so far
2011-05-19 23:19:39,974 - INFO - Processed 40100000 reads so far
2011-05-19 23:19:51,131 - INFO - Processed 40200000 reads so far
2011-05-19 23:20:04,357 - INFO - Processed 40300000 reads so far
2011-05-19 23:20:12,990 - INFO - Processed 40400000 reads so far
2011-05-19 23:20:24,382 - INFO - Processed 40500000 reads so far
2011-05-19 23:20:34,316 - INFO - Processed 40600000 reads so far
2011-05-19 23:20:42,590 - INFO - Processed 40700000 reads so far
2011-05-19 23:20:51,590 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:62990063-83010063
2011-05-19 23:20:52,449 - INFO - Processed 40800000 reads so far
2011-05-19 23:21:05,934 - INFO - Processed 40900000 reads so far
2011-05-19 23:21:18,493 - INFO - Processed 41000000 reads so far
2011-05-19 23:21:29,801 - INFO - Processed 41100000 reads so far
2011-05-19 23:21:41,384 - INFO - Processed 41200000 reads so far
2011-05-19 23:21:52,623 - INFO - Processed 41300000 reads so far
2011-05-19 23:22:00,790 - INFO - Processed 41400000 reads so far
2011-05-19 23:22:10,080 - INFO - Processed 41500000 reads so far
2011-05-19 23:22:19,259 - INFO - Processed 41600000 reads so far
2011-05-19 23:22:29,638 - INFO - Processed 41700000 reads so far
2011-05-19 23:22:39,386 - INFO - Processed 41800000 reads so far
2011-05-19 23:22:48,774 - INFO - Processed 41900000 reads so far
2011-05-19 23:22:58,708 - INFO - Processed 42000000 reads so far
2011-05-19 23:23:08,254 - INFO - Processed 42100000 reads so far
2011-05-19 23:23:10,339 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:82990071-103010071
2011-05-19 23:23:17,826 - INFO - Processed 42200000 reads so far
2011-05-19 23:23:26,670 - INFO - Processed 42300000 reads so far
2011-05-19 23:23:36,320 - INFO - Processed 42400000 reads so far
2011-05-19 23:23:45,925 - INFO - Processed 42500000 reads so far
2011-05-19 23:23:56,190 - INFO - Processed 42600000 reads so far
2011-05-19 23:24:06,293 - INFO - Processed 42700000 reads so far
2011-05-19 23:24:16,469 - INFO - Processed 42800000 reads so far
2011-05-19 23:24:25,906 - INFO - Processed 42900000 reads so far
2011-05-19 23:24:37,032 - INFO - Processed 43000000 reads so far
2011-05-19 23:24:48,479 - INFO - Processed 43100000 reads so far
2011-05-19 23:25:01,508 - INFO - Processed 43200000 reads so far
2011-05-19 23:25:12,229 - INFO - Processed 43300000 reads so far
2011-05-19 23:25:31,238 - INFO - Processed 43400000 reads so far
2011-05-19 23:25:35,142 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:102990101-123010101
2011-05-19 23:25:38,569 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:2990098-23010098
2011-05-19 23:25:43,599 - INFO - Processed 43500000 reads so far
2011-05-19 23:25:53,056 - INFO - Processed 43600000 reads so far
2011-05-19 23:26:01,792 - INFO - Processed 43700000 reads so far
2011-05-19 23:26:11,159 - INFO - Processed 43800000 reads so far
2011-05-19 23:26:21,462 - INFO - Processed 43900000 reads so far
2011-05-19 23:26:30,021 - INFO - Processed 44000000 reads so far
2011-05-19 23:26:38,943 - INFO - Processed 44100000 reads so far
2011-05-19 23:26:47,879 - INFO - Processed 44200000 reads so far
2011-05-19 23:26:57,263 - INFO - Processed 44300000 reads so far
2011-05-19 23:27:07,886 - INFO - Processed 44400000 reads so far
2011-05-19 23:27:18,346 - INFO - Processed 44500000 reads so far
2011-05-19 23:27:27,305 - INFO - Processed 44600000 reads so far
2011-05-19 23:27:36,423 - INFO - Processed 44700000 reads so far
2011-05-19 23:27:45,669 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:22990106-43010106
2011-05-19 23:27:46,891 - INFO - Processed 44800000 reads so far
2011-05-19 23:27:58,855 - INFO - Processed 44900000 reads so far
2011-05-19 23:28:09,888 - INFO - Processed 45000000 reads so far
2011-05-19 23:28:20,748 - INFO - Processed 45100000 reads so far
2011-05-19 23:28:32,207 - INFO - Processed 45200000 reads so far
2011-05-19 23:28:44,325 - INFO - Processed 45300000 reads so far
2011-05-19 23:28:55,772 - INFO - Processed 45400000 reads so far
2011-05-19 23:29:07,037 - INFO - Processed 45500000 reads so far
2011-05-19 23:29:18,410 - INFO - Processed 45600000 reads so far
2011-05-19 23:29:30,152 - INFO - Processed 45700000 reads so far
2011-05-19 23:29:41,603 - INFO - Processed 45800000 reads so far
2011-05-19 23:29:52,810 - INFO - Processed 45900000 reads so far
2011-05-19 23:30:03,878 - INFO - Processed 46000000 reads so far
2011-05-19 23:30:05,703 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:42990138-63010138
2011-05-19 23:30:13,671 - INFO - Processed 46100000 reads so far
2011-05-19 23:30:24,892 - INFO - Processed 46200000 reads so far
2011-05-19 23:30:34,542 - INFO - Processed 46300000 reads so far
2011-05-19 23:30:45,632 - INFO - Processed 46400000 reads so far
2011-05-19 23:30:56,248 - INFO - Processed 46500000 reads so far
2011-05-19 23:31:06,942 - INFO - Processed 46600000 reads so far
2011-05-19 23:31:16,462 - INFO - Processed 46700000 reads so far
2011-05-19 23:31:26,351 - INFO - Processed 46800000 reads so far
2011-05-19 23:31:36,878 - INFO - Processed 46900000 reads so far
2011-05-19 23:31:51,957 - INFO - Processed 47000000 reads so far
2011-05-19 23:32:03,758 - INFO - Processed 47100000 reads so far
2011-05-19 23:32:14,699 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:62990143-83010143
2011-05-19 23:32:16,559 - INFO - Processed 47200000 reads so far
2011-05-19 23:32:27,115 - INFO - Processed 47300000 reads so far
2011-05-19 23:32:39,451 - INFO - Processed 47400000 reads so far
2011-05-19 23:32:49,983 - INFO - Processed 47500000 reads so far
2011-05-19 23:33:01,817 - INFO - Processed 47600000 reads so far
2011-05-19 23:33:12,832 - INFO - Processed 47700000 reads so far
2011-05-19 23:33:27,882 - INFO - Processed 47800000 reads so far
2011-05-19 23:33:40,529 - INFO - Processed 47900000 reads so far
2011-05-19 23:33:50,752 - INFO - Processed 48000000 reads so far
2011-05-19 23:34:01,632 - INFO - Processed 48100000 reads so far
2011-05-19 23:34:12,582 - INFO - Processed 48200000 reads so far
2011-05-19 23:34:20,751 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:82990144-103010144
2011-05-19 23:34:23,300 - INFO - Processed 48300000 reads so far
2011-05-19 23:34:35,069 - INFO - Processed 48400000 reads so far
2011-05-19 23:34:48,200 - INFO - Processed 48500000 reads so far
2011-05-19 23:34:59,722 - INFO - Processed 48600000 reads so far
2011-05-19 23:35:10,991 - INFO - Processed 48700000 reads so far
2011-05-19 23:35:20,110 - INFO - Processed 48800000 reads so far
2011-05-19 23:35:29,035 - INFO - Processed 48900000 reads so far
2011-05-19 23:35:41,366 - INFO - Processed 49000000 reads so far
2011-05-19 23:35:49,333 - INFO - Processed 49100000 reads so far
2011-05-19 23:35:58,639 - INFO - Processed 49200000 reads so far
2011-05-19 23:36:02,615 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16_random:0-20010080
2011-05-19 23:36:02,635 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:2989988-23009988
2011-05-19 23:36:06,835 - INFO - Processed 49300000 reads so far
2011-05-19 23:36:18,569 - INFO - Processed 49400000 reads so far
2011-05-19 23:36:30,885 - INFO - Processed 49500000 reads so far
2011-05-19 23:36:43,224 - INFO - Processed 49600000 reads so far
2011-05-19 23:36:55,850 - INFO - Processed 49700000 reads so far
2011-05-19 23:37:07,795 - INFO - Processed 49800000 reads so far
2011-05-19 23:37:18,945 - INFO - Processed 49900000 reads so far
2011-05-19 23:37:29,576 - INFO - Processed 50000000 reads so far
2011-05-19 23:37:40,655 - INFO - Processed 50100000 reads so far
2011-05-19 23:37:51,053 - INFO - Processed 50200000 reads so far
2011-05-19 23:38:01,175 - INFO - Processed 50300000 reads so far
2011-05-19 23:38:15,956 - INFO - Processed 50400000 reads so far
2011-05-19 23:38:24,314 - INFO - Processed 50500000 reads so far
2011-05-19 23:38:25,368 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:22989999-43009999
2011-05-19 23:38:36,319 - INFO - Processed 50600000 reads so far
2011-05-19 23:38:48,433 - INFO - Processed 50700000 reads so far
2011-05-19 23:39:23,434 - INFO - Processed 50800000 reads so far
2011-05-19 23:39:44,656 - INFO - Processed 50900000 reads so far
2011-05-19 23:39:55,201 - INFO - Processed 51000000 reads so far
2011-05-19 23:40:06,431 - INFO - Processed 51100000 reads so far
2011-05-19 23:40:16,253 - INFO - Processed 51200000 reads so far
2011-05-19 23:40:27,439 - INFO - Processed 51300000 reads so far
2011-05-19 23:40:38,510 - INFO - Processed 51400000 reads so far
2011-05-19 23:40:51,766 - INFO - Processed 51500000 reads so far
2011-05-19 23:41:04,342 - INFO - Processed 51600000 reads so far
2011-05-19 23:41:16,193 - INFO - Processed 51700000 reads so far
2011-05-19 23:41:28,447 - INFO - Processed 51800000 reads so far
2011-05-19 23:41:36,131 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:42990025-63010025
2011-05-19 23:41:39,972 - INFO - Processed 51900000 reads so far
2011-05-19 23:41:51,112 - INFO - Processed 52000000 reads so far
2011-05-19 23:42:02,877 - INFO - Processed 52100000 reads so far
2011-05-19 23:42:13,713 - INFO - Processed 52200000 reads so far
2011-05-19 23:42:24,376 - INFO - Processed 52300000 reads so far
2011-05-19 23:42:34,709 - INFO - Processed 52400000 reads so far
2011-05-19 23:42:45,074 - INFO - Processed 52500000 reads so far
2011-05-19 23:42:55,827 - INFO - Processed 52600000 reads so far
2011-05-19 23:43:07,837 - INFO - Processed 52700000 reads so far
2011-05-19 23:43:17,783 - INFO - Processed 52800000 reads so far
2011-05-19 23:43:27,726 - INFO - Processed 52900000 reads so far
2011-05-19 23:43:41,426 - INFO - Processed 53000000 reads so far
2011-05-19 23:43:49,159 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:62990057-83010057
2011-05-19 23:43:51,949 - INFO - Processed 53100000 reads so far
2011-05-19 23:44:02,954 - INFO - Processed 53200000 reads so far
2011-05-19 23:44:15,611 - INFO - Processed 53300000 reads so far
2011-05-19 23:44:25,641 - INFO - Processed 53400000 reads so far
2011-05-19 23:44:36,017 - INFO - Processed 53500000 reads so far
2011-05-19 23:44:48,333 - INFO - Processed 53600000 reads so far
2011-05-19 23:45:00,253 - INFO - Processed 53700000 reads so far
2011-05-19 23:45:11,669 - INFO - Processed 53800000 reads so far
2011-05-19 23:45:23,907 - INFO - Processed 53900000 reads so far
2011-05-19 23:45:35,895 - INFO - Processed 54000000 reads so far
2011-05-19 23:45:48,415 - INFO - Processed 54100000 reads so far
2011-05-19 23:46:01,502 - INFO - Processed 54200000 reads so far
2011-05-19 23:46:11,539 - INFO - Processed 54300000 reads so far
2011-05-19 23:46:12,628 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:82990163-103010163
2011-05-19 23:46:23,820 - INFO - Processed 54400000 reads so far
2011-05-19 23:46:39,555 - INFO - Processed 54500000 reads so far
2011-05-19 23:46:50,351 - INFO - Processed 54600000 reads so far
2011-05-19 23:47:02,022 - INFO - Processed 54700000 reads so far
2011-05-19 23:47:15,916 - INFO - Processed 54800000 reads so far
2011-05-19 23:47:27,559 - INFO - Processed 54900000 reads so far
2011-05-19 23:47:39,121 - INFO - Processed 55000000 reads so far
2011-05-19 23:47:46,853 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17_random:0-20010052
2011-05-19 23:47:49,111 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:2989999-23009999
2011-05-19 23:47:52,572 - INFO - Processed 55100000 reads so far
2011-05-19 23:48:03,657 - INFO - Processed 55200000 reads so far
2011-05-19 23:48:17,164 - INFO - Processed 55300000 reads so far
2011-05-19 23:48:48,541 - INFO - Processed 55400000 reads so far
2011-05-19 23:48:59,955 - INFO - Processed 55500000 reads so far
2011-05-19 23:49:13,445 - INFO - Processed 55600000 reads so far
2011-05-19 23:49:27,715 - INFO - Processed 55700000 reads so far
2011-05-19 23:49:40,414 - INFO - Processed 55800000 reads so far
2011-05-19 23:49:51,582 - INFO - Processed 55900000 reads so far
2011-05-19 23:50:05,213 - INFO - Processed 56000000 reads so far
2011-05-19 23:50:16,655 - INFO - Processed 56100000 reads so far
2011-05-19 23:50:28,314 - INFO - Processed 56200000 reads so far
2011-05-19 23:50:40,235 - INFO - Processed 56300000 reads so far
2011-05-19 23:50:45,599 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:22990004-43010004
2011-05-19 23:50:50,735 - INFO - Processed 56400000 reads so far
2011-05-19 23:51:00,737 - INFO - Processed 56500000 reads so far
2011-05-19 23:51:11,329 - INFO - Processed 56600000 reads so far
2011-05-19 23:51:22,374 - INFO - Processed 56700000 reads so far
2011-05-19 23:51:32,331 - INFO - Processed 56800000 reads so far
2011-05-19 23:51:44,568 - INFO - Processed 56900000 reads so far
2011-05-19 23:51:56,177 - INFO - Processed 57000000 reads so far
2011-05-19 23:52:09,908 - INFO - Processed 57100000 reads so far
2011-05-19 23:52:21,320 - INFO - Processed 57200000 reads so far
2011-05-19 23:52:32,285 - INFO - Processed 57300000 reads so far
2011-05-19 23:52:42,752 - INFO - Processed 57400000 reads so far
2011-05-19 23:52:52,598 - INFO - Processed 57500000 reads so far
2011-05-19 23:53:01,613 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:42990016-63010016
2011-05-19 23:53:02,993 - INFO - Processed 57600000 reads so far
2011-05-19 23:53:13,143 - INFO - Processed 57700000 reads so far
2011-05-19 23:53:23,650 - INFO - Processed 57800000 reads so far
2011-05-19 23:53:35,042 - INFO - Processed 57900000 reads so far
2011-05-19 23:53:46,035 - INFO - Processed 58000000 reads so far
2011-05-19 23:53:59,392 - INFO - Processed 58100000 reads so far
2011-05-19 23:54:10,236 - INFO - Processed 58200000 reads so far
2011-05-19 23:54:21,154 - INFO - Processed 58300000 reads so far
2011-05-19 23:54:32,485 - INFO - Processed 58400000 reads so far
2011-05-19 23:54:43,341 - INFO - Processed 58500000 reads so far
2011-05-19 23:54:56,227 - INFO - Processed 58600000 reads so far
2011-05-19 23:55:07,565 - INFO - Processed 58700000 reads so far
2011-05-19 23:55:18,508 - INFO - Processed 58800000 reads so far
2011-05-19 23:55:18,512 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:62990019-83010019
2011-05-19 23:55:35,864 - INFO - Processed 58900000 reads so far
2011-05-19 23:56:03,026 - INFO - Processed 59000000 reads so far
2011-05-19 23:56:15,063 - INFO - Processed 59100000 reads so far
2011-05-19 23:56:27,188 - INFO - Processed 59200000 reads so far
2011-05-19 23:56:39,093 - INFO - Processed 59300000 reads so far
2011-05-19 23:56:50,818 - INFO - Processed 59400000 reads so far
2011-05-19 23:57:02,867 - INFO - Processed 59500000 reads so far
2011-05-19 23:57:14,190 - INFO - Processed 59600000 reads so far
2011-05-19 23:57:26,631 - INFO - Processed 59700000 reads so far
2011-05-19 23:57:37,952 - INFO - Processed 59800000 reads so far
2011-05-19 23:57:47,694 - INFO - Processed 59900000 reads so far
2011-05-19 23:57:58,354 - INFO - Processed 60000000 reads so far
2011-05-19 23:58:04,018 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:82990101-103010101
2011-05-19 23:58:09,097 - INFO - Processed 60100000 reads so far
2011-05-19 23:58:19,674 - INFO - Processed 60200000 reads so far
2011-05-19 23:58:31,562 - INFO - Processed 60300000 reads so far
2011-05-19 23:58:45,212 - INFO - Processed 60400000 reads so far
2011-05-19 23:58:57,419 - INFO - Processed 60500000 reads so far
2011-05-19 23:59:01,220 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:2990045-23010045
2011-05-19 23:59:08,974 - INFO - Processed 60600000 reads so far
2011-05-19 23:59:20,589 - INFO - Processed 60700000 reads so far
2011-05-19 23:59:33,006 - INFO - Processed 60800000 reads so far
2011-05-19 23:59:44,724 - INFO - Processed 60900000 reads so far
2011-05-19 23:59:56,757 - INFO - Processed 61000000 reads so far
2011-05-20 00:00:09,299 - INFO - Processed 61100000 reads so far
2011-05-20 00:00:21,343 - INFO - Processed 61200000 reads so far
2011-05-20 00:00:34,645 - INFO - Processed 61300000 reads so far
2011-05-20 00:00:45,783 - INFO - Processed 61400000 reads so far
2011-05-20 00:00:57,105 - INFO - Processed 61500000 reads so far
2011-05-20 00:01:08,527 - INFO - Processed 61600000 reads so far
2011-05-20 00:01:19,874 - INFO - Processed 61700000 reads so far
2011-05-20 00:01:25,855 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:22990077-43010077
2011-05-20 00:01:33,090 - INFO - Processed 61800000 reads so far
2011-05-20 00:01:43,915 - INFO - Processed 61900000 reads so far
2011-05-20 00:01:54,156 - INFO - Processed 62000000 reads so far
2011-05-20 00:02:03,831 - INFO - Processed 62100000 reads so far
2011-05-20 00:02:14,922 - INFO - Processed 62200000 reads so far
2011-05-20 00:02:24,105 - INFO - Processed 62300000 reads so far
2011-05-20 00:02:32,523 - INFO - Processed 62400000 reads so far
2011-05-20 00:02:40,037 - INFO - Processed 62500000 reads so far
2011-05-20 00:02:49,505 - INFO - Processed 62600000 reads so far
2011-05-20 00:03:00,019 - INFO - Processed 62700000 reads so far
2011-05-20 00:03:10,008 - INFO - Processed 62800000 reads so far
2011-05-20 00:03:21,403 - INFO - Processed 62900000 reads so far
2011-05-20 00:03:30,696 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:42990098-63010098
2011-05-20 00:03:32,798 - INFO - Processed 63000000 reads so far
2011-05-20 00:04:03,688 - INFO - Processed 63100000 reads so far
2011-05-20 00:04:25,903 - INFO - Processed 63200000 reads so far
2011-05-20 00:04:37,660 - INFO - Processed 63300000 reads so far
2011-05-20 00:04:46,498 - INFO - Processed 63400000 reads so far
2011-05-20 00:04:54,705 - INFO - Processed 63500000 reads so far
2011-05-20 00:05:05,520 - INFO - Processed 63600000 reads so far
2011-05-20 00:05:16,568 - INFO - Processed 63700000 reads so far
2011-05-20 00:05:26,653 - INFO - Processed 63800000 reads so far
2011-05-20 00:05:38,868 - INFO - Processed 63900000 reads so far
2011-05-20 00:05:50,016 - INFO - Processed 64000000 reads so far
2011-05-20 00:06:08,101 - INFO - Processed 64100000 reads so far
2011-05-20 00:06:14,047 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:2989974-23009974
2011-05-20 00:06:19,587 - INFO - Processed 64200000 reads so far
2011-05-20 00:06:29,617 - INFO - Processed 64300000 reads so far
2011-05-20 00:06:41,236 - INFO - Processed 64400000 reads so far
2011-05-20 00:06:53,779 - INFO - Processed 64500000 reads so far
2011-05-20 00:07:02,706 - INFO - Processed 64600000 reads so far
2011-05-20 00:07:13,609 - INFO - Processed 64700000 reads so far
2011-05-20 00:07:26,075 - INFO - Processed 64800000 reads so far
2011-05-20 00:07:34,247 - INFO - Processed 64900000 reads so far
2011-05-20 00:07:42,965 - INFO - Processed 65000000 reads so far
2011-05-20 00:07:58,105 - INFO - Processed 65100000 reads so far
2011-05-20 00:08:06,546 - INFO - Processed 65200000 reads so far
2011-05-20 00:08:16,692 - INFO - Processed 65300000 reads so far
2011-05-20 00:08:19,578 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:22989979-43009979
2011-05-20 00:08:27,517 - INFO - Processed 65400000 reads so far
2011-05-20 00:08:41,135 - INFO - Processed 65500000 reads so far
2011-05-20 00:08:54,176 - INFO - Processed 65600000 reads so far
2011-05-20 00:09:06,734 - INFO - Processed 65700000 reads so far
2011-05-20 00:09:18,576 - INFO - Processed 65800000 reads so far
2011-05-20 00:09:30,099 - INFO - Processed 65900000 reads so far
2011-05-20 00:09:42,584 - INFO - Processed 66000000 reads so far
2011-05-20 00:09:54,193 - INFO - Processed 66100000 reads so far
2011-05-20 00:10:06,573 - INFO - Processed 66200000 reads so far
2011-05-20 00:10:27,602 - INFO - Processed 66300000 reads so far
2011-05-20 00:10:56,975 - INFO - Processed 66400000 reads so far
2011-05-20 00:11:09,999 - INFO - Processed 66500000 reads so far
2011-05-20 00:11:19,996 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:42989981-63009981
2011-05-20 00:11:26,020 - INFO - Processed 66600000 reads so far
2011-05-20 00:11:36,975 - INFO - Processed 66700000 reads so far
2011-05-20 00:11:49,197 - INFO - Processed 66800000 reads so far
2011-05-20 00:12:01,870 - INFO - Processed 66900000 reads so far
2011-05-20 00:12:29,017 - INFO - Processed 67000000 reads so far
2011-05-20 00:12:45,844 - INFO - Processed 67100000 reads so far
2011-05-20 00:13:05,066 - INFO - Processed 67200000 reads so far
2011-05-20 00:13:14,852 - INFO - Processed 67300000 reads so far
2011-05-20 00:13:23,654 - INFO - Processed 67400000 reads so far
2011-05-20 00:13:37,392 - INFO - Processed 67500000 reads so far
2011-05-20 00:13:47,073 - INFO - Processed 67600000 reads so far
2011-05-20 00:13:57,453 - INFO - Processed 67700000 reads so far
2011-05-20 00:14:00,921 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:62990041-83010041
2011-05-20 00:14:07,849 - INFO - Processed 67800000 reads so far
2011-05-20 00:14:19,891 - INFO - Processed 67900000 reads so far
2011-05-20 00:14:31,388 - INFO - Processed 68000000 reads so far
2011-05-20 00:14:41,234 - INFO - Processed 68100000 reads so far
2011-05-20 00:15:05,416 - INFO - Processed 68200000 reads so far
2011-05-20 00:15:15,489 - INFO - Processed 68300000 reads so far
2011-05-20 00:15:24,399 - INFO - Processed 68400000 reads so far
2011-05-20 00:15:34,922 - INFO - Processed 68500000 reads so far
2011-05-20 00:15:42,614 - INFO - Processed 68600000 reads so far
2011-05-20 00:15:52,697 - INFO - Processed 68700000 reads so far
2011-05-20 00:16:05,229 - INFO - Processed 68800000 reads so far
2011-05-20 00:16:16,380 - INFO - Processed 68900000 reads so far
2011-05-20 00:16:21,068 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:82990054-103010054
2011-05-20 00:16:28,622 - INFO - Processed 69000000 reads so far
2011-05-20 00:16:40,972 - INFO - Processed 69100000 reads so far
2011-05-20 00:16:48,609 - INFO - Processed 69200000 reads so far
2011-05-20 00:16:56,804 - INFO - Processed 69300000 reads so far
2011-05-20 00:17:05,767 - INFO - Processed 69400000 reads so far
2011-05-20 00:17:14,914 - INFO - Processed 69500000 reads so far
2011-05-20 00:17:25,010 - INFO - Processed 69600000 reads so far
2011-05-20 00:17:38,022 - INFO - Processed 69700000 reads so far
2011-05-20 00:17:49,606 - INFO - Processed 69800000 reads so far
2011-05-20 00:18:01,052 - INFO - Processed 69900000 reads so far
2011-05-20 00:18:15,599 - INFO - Processed 70000000 reads so far
2011-05-20 00:18:25,894 - INFO - Processed 70100000 reads so far
2011-05-20 00:18:35,251 - INFO - Processed 70200000 reads so far
2011-05-20 00:18:42,531 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:102990191-123010191
2011-05-20 00:18:46,992 - INFO - Processed 70300000 reads so far
2011-05-20 00:18:55,806 - INFO - Processed 70400000 reads so far
2011-05-20 00:19:09,767 - INFO - Processed 70500000 reads so far
2011-05-20 00:19:20,624 - INFO - Processed 70600000 reads so far
2011-05-20 00:19:29,687 - INFO - Processed 70700000 reads so far
2011-05-20 00:19:39,631 - INFO - Processed 70800000 reads so far
2011-05-20 00:19:49,252 - INFO - Processed 70900000 reads so far
2011-05-20 00:19:59,707 - INFO - Processed 71000000 reads so far
2011-05-20 00:20:10,543 - INFO - Processed 71100000 reads so far
2011-05-20 00:20:21,286 - INFO - Processed 71200000 reads so far
2011-05-20 00:20:30,750 - INFO - Processed 71300000 reads so far
2011-05-20 00:20:39,843 - INFO - Processed 71400000 reads so far
2011-05-20 00:20:43,736 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:122990203-143010203
2011-05-20 00:20:53,456 - INFO - Processed 71500000 reads so far
2011-05-20 00:21:03,726 - INFO - Processed 71600000 reads so far
2011-05-20 00:21:12,205 - INFO - Processed 71700000 reads so far
2011-05-20 00:21:20,322 - INFO - Processed 71800000 reads so far
2011-05-20 00:21:29,816 - INFO - Processed 71900000 reads so far
2011-05-20 00:21:38,964 - INFO - Processed 72000000 reads so far
2011-05-20 00:21:49,137 - INFO - Processed 72100000 reads so far
2011-05-20 00:22:00,665 - INFO - Processed 72200000 reads so far
2011-05-20 00:22:09,818 - INFO - Processed 72300000 reads so far
2011-05-20 00:22:23,388 - INFO - Processed 72400000 reads so far
2011-05-20 00:22:33,007 - INFO - Processed 72500000 reads so far
2011-05-20 00:22:42,454 - INFO - Processed 72600000 reads so far
2011-05-20 00:22:51,881 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:142990251-163010251
2011-05-20 00:22:54,344 - INFO - Processed 72700000 reads so far
2011-05-20 00:23:04,239 - INFO - Processed 72800000 reads so far
2011-05-20 00:23:17,394 - INFO - Processed 72900000 reads so far
2011-05-20 00:23:31,314 - INFO - Processed 73000000 reads so far
2011-05-20 00:23:42,645 - INFO - Processed 73100000 reads so far
2011-05-20 00:23:52,340 - INFO - Processed 73200000 reads so far
2011-05-20 00:24:03,438 - INFO - Processed 73300000 reads so far
2011-05-20 00:24:14,454 - INFO - Processed 73400000 reads so far
2011-05-20 00:24:24,055 - INFO - Processed 73500000 reads so far
2011-05-20 00:24:35,296 - INFO - Processed 73600000 reads so far
2011-05-20 00:24:45,438 - INFO - Processed 73700000 reads so far
2011-05-20 00:24:55,982 - INFO - Processed 73800000 reads so far
2011-05-20 00:25:01,033 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:162990269-183010269
2011-05-20 00:25:07,419 - INFO - Processed 73900000 reads so far
2011-05-20 00:25:19,002 - INFO - Processed 74000000 reads so far
2011-05-20 00:25:30,326 - INFO - Processed 74100000 reads so far
2011-05-20 00:25:42,634 - INFO - Processed 74200000 reads so far
2011-05-20 00:25:53,809 - INFO - Processed 74300000 reads so far
2011-05-20 00:26:04,638 - INFO - Processed 74400000 reads so far
2011-05-20 00:26:17,256 - INFO - Processed 74500000 reads so far
2011-05-20 00:26:30,109 - INFO - Processed 74600000 reads so far
2011-05-20 00:26:41,549 - INFO - Processed 74700000 reads so far
2011-05-20 00:26:54,711 - INFO - Processed 74800000 reads so far
2011-05-20 00:27:05,224 - INFO - Processed 74900000 reads so far
2011-05-20 00:27:16,882 - INFO - Processed 75000000 reads so far
2011-05-20 00:27:30,102 - INFO - Processed 75100000 reads so far
2011-05-20 00:27:32,521 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:182990271-203010271
2011-05-20 00:27:43,161 - INFO - Processed 75200000 reads so far
2011-05-20 00:28:08,662 - INFO - Processed 75300000 reads so far
2011-05-20 00:28:29,798 - INFO - Processed 75400000 reads so far
2011-05-20 00:28:43,575 - INFO - Processed 75500000 reads so far
2011-05-20 00:28:58,999 - INFO - Processed 75600000 reads so far
2011-05-20 00:29:10,053 - INFO - Processed 75700000 reads so far
2011-05-20 00:29:17,718 - INFO - Processed 75800000 reads so far
2011-05-20 00:29:28,854 - INFO - Processed 75900000 reads so far
2011-05-20 00:29:43,317 - INFO - Processed 76000000 reads so far
2011-05-20 00:29:45,995 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1_random:0-20010000
2011-05-20 00:29:53,850 - INFO - Processed 76100000 reads so far
2011-05-20 00:30:01,378 - INFO - Processed 76200000 reads so far
2011-05-20 00:30:02,287 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:2990030-23010030
2011-05-20 00:30:10,569 - INFO - Processed 76300000 reads so far
2011-05-20 00:30:20,487 - INFO - Processed 76400000 reads so far
2011-05-20 00:30:30,347 - INFO - Processed 76500000 reads so far
2011-05-20 00:30:38,775 - INFO - Processed 76600000 reads so far
2011-05-20 00:30:47,357 - INFO - Processed 76700000 reads so far
2011-05-20 00:30:55,730 - INFO - Processed 76800000 reads so far
2011-05-20 00:31:07,204 - INFO - Processed 76900000 reads so far
2011-05-20 00:31:16,532 - INFO - Processed 77000000 reads so far
2011-05-20 00:31:25,116 - INFO - Processed 77100000 reads so far
2011-05-20 00:31:36,782 - INFO - Processed 77200000 reads so far
2011-05-20 00:31:46,581 - INFO - Processed 77300000 reads so far
2011-05-20 00:31:55,283 - INFO - Processed 77400000 reads so far
2011-05-20 00:32:00,498 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:22990053-43010053
2011-05-20 00:32:05,689 - INFO - Processed 77500000 reads so far
2011-05-20 00:32:17,656 - INFO - Processed 77600000 reads so far
2011-05-20 00:32:26,305 - INFO - Processed 77700000 reads so far
2011-05-20 00:32:35,518 - INFO - Processed 77800000 reads so far
2011-05-20 00:32:45,556 - INFO - Processed 77900000 reads so far
2011-05-20 00:32:56,769 - INFO - Processed 78000000 reads so far
2011-05-20 00:33:05,661 - INFO - Processed 78100000 reads so far
2011-05-20 00:33:14,985 - INFO - Processed 78200000 reads so far
2011-05-20 00:33:24,528 - INFO - Processed 78300000 reads so far
2011-05-20 00:33:33,245 - INFO - Processed 78400000 reads so far
2011-05-20 00:33:42,525 - INFO - Processed 78500000 reads so far
2011-05-20 00:33:51,700 - INFO - Processed 78600000 reads so far
2011-05-20 00:34:02,815 - INFO - Processed 78700000 reads so far
2011-05-20 00:34:04,930 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:42990097-63010097
2011-05-20 00:34:13,604 - INFO - Processed 78800000 reads so far
2011-05-20 00:34:23,969 - INFO - Processed 78900000 reads so far
2011-05-20 00:34:34,914 - INFO - Processed 79000000 reads so far
2011-05-20 00:34:44,925 - INFO - Processed 79100000 reads so far
2011-05-20 00:34:54,332 - INFO - Processed 79200000 reads so far
2011-05-20 00:35:04,174 - INFO - Processed 79300000 reads so far
2011-05-20 00:35:12,753 - INFO - Processed 79400000 reads so far
2011-05-20 00:35:25,010 - INFO - Processed 79500000 reads so far
2011-05-20 00:35:36,260 - INFO - Processed 79600000 reads so far
2011-05-20 00:35:48,062 - INFO - Processed 79700000 reads so far
2011-05-20 00:35:59,340 - INFO - Processed 79800000 reads so far
2011-05-20 00:36:10,436 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:62990124-83010124
2011-05-20 00:36:11,087 - INFO - Processed 79900000 reads so far
2011-05-20 00:36:21,112 - INFO - Processed 80000000 reads so far
2011-05-20 00:36:30,045 - INFO - Processed 80100000 reads so far
2011-05-20 00:36:37,895 - INFO - Processed 80200000 reads so far
2011-05-20 00:36:47,529 - INFO - Processed 80300000 reads so far
2011-05-20 00:36:55,909 - INFO - Processed 80400000 reads so far
2011-05-20 00:37:03,505 - INFO - Processed 80500000 reads so far
2011-05-20 00:37:11,796 - INFO - Processed 80600000 reads so far
2011-05-20 00:37:22,468 - INFO - Processed 80700000 reads so far
2011-05-20 00:37:35,716 - INFO - Processed 80800000 reads so far
2011-05-20 00:37:47,666 - INFO - Processed 80900000 reads so far
2011-05-20 00:37:57,051 - INFO - Processed 81000000 reads so far
2011-05-20 00:38:08,254 - INFO - Processed 81100000 reads so far
2011-05-20 00:38:09,120 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:82990133-103010133
2011-05-20 00:38:19,159 - INFO - Processed 81200000 reads so far
2011-05-20 00:38:30,075 - INFO - Processed 81300000 reads so far
2011-05-20 00:38:39,379 - INFO - Processed 81400000 reads so far
2011-05-20 00:38:51,067 - INFO - Processed 81500000 reads so far
2011-05-20 00:39:00,679 - INFO - Processed 81600000 reads so far
2011-05-20 00:39:10,283 - INFO - Processed 81700000 reads so far
2011-05-20 00:39:19,200 - INFO - Processed 81800000 reads so far
2011-05-20 00:39:27,427 - INFO - Processed 81900000 reads so far
2011-05-20 00:39:36,115 - INFO - Processed 82000000 reads so far
2011-05-20 00:39:45,704 - INFO - Processed 82100000 reads so far
2011-05-20 00:39:55,649 - INFO - Processed 82200000 reads so far
2011-05-20 00:40:04,567 - INFO - Processed 82300000 reads so far
2011-05-20 00:40:13,552 - INFO - Processed 82400000 reads so far
2011-05-20 00:40:22,480 - INFO - Processed 82500000 reads so far
2011-05-20 00:40:30,103 - INFO - Processed 82600000 reads so far
2011-05-20 00:40:37,802 - INFO - Processed 82700000 reads so far
2011-05-20 00:40:46,137 - INFO - Processed 82800000 reads so far
2011-05-20 00:40:55,517 - INFO - Processed 82900000 reads so far
2011-05-20 00:41:02,374 - INFO - Processed 83000000 reads so far
2011-05-20 00:41:10,627 - INFO - Processed 83100000 reads so far
2011-05-20 00:41:17,819 - INFO - Processed 83200000 reads so far
2011-05-20 00:41:25,389 - INFO - Processed 83300000 reads so far
2011-05-20 00:41:32,700 - INFO - Processed 83400000 reads so far
2011-05-20 00:41:44,295 - INFO - Processed 83500000 reads so far
2011-05-20 00:41:51,264 - INFO - Processed 83600000 reads so far
2011-05-20 00:41:59,425 - INFO - Processed 83700000 reads so far
2011-05-20 00:42:06,715 - INFO - Processed 83800000 reads so far
2011-05-20 00:42:14,149 - INFO - Processed 83900000 reads so far
2011-05-20 00:42:24,330 - INFO - Processed 84000000 reads so far
2011-05-20 00:42:32,561 - INFO - Processed 84100000 reads so far
2011-05-20 00:42:41,307 - INFO - Processed 84200000 reads so far
2011-05-20 00:42:50,968 - INFO - Processed 84300000 reads so far
2011-05-20 00:43:00,586 - INFO - Processed 84400000 reads so far
2011-05-20 00:43:06,630 - INFO - Processed 84500000 reads so far
2011-05-20 00:43:15,960 - INFO - Processed 84600000 reads so far
2011-05-20 00:43:24,919 - INFO - Processed 84700000 reads so far
2011-05-20 00:43:34,279 - INFO - Processed 84800000 reads so far
2011-05-20 00:43:43,342 - INFO - Processed 84900000 reads so far
2011-05-20 00:43:51,447 - INFO - Processed 85000000 reads so far
2011-05-20 00:44:01,377 - INFO - Processed 85100000 reads so far
2011-05-20 00:44:10,006 - INFO - Processed 85200000 reads so far
2011-05-20 00:44:17,791 - INFO - Processed 85300000 reads so far
2011-05-20 00:44:26,837 - INFO - Processed 85400000 reads so far
2011-05-20 00:44:39,221 - INFO - Processed 85500000 reads so far
2011-05-20 00:44:47,218 - INFO - Processed 85600000 reads so far
2011-05-20 00:44:53,710 - INFO - Processed 85700000 reads so far
2011-05-20 00:45:02,301 - INFO - Processed 85800000 reads so far
2011-05-20 00:45:13,908 - INFO - Processed 85900000 reads so far
2011-05-20 00:45:23,977 - INFO - Processed 86000000 reads so far
2011-05-20 00:45:33,414 - INFO - Processed 86100000 reads so far
2011-05-20 00:45:40,276 - INFO - Processed 86200000 reads so far
2011-05-20 00:45:48,751 - INFO - Processed 86300000 reads so far
2011-05-20 00:45:57,457 - INFO - Processed 86400000 reads so far
2011-05-20 00:46:05,456 - INFO - Processed 86500000 reads so far
2011-05-20 00:46:12,575 - INFO - Processed 86600000 reads so far
2011-05-20 00:46:21,744 - INFO - Processed 86700000 reads so far
2011-05-20 00:46:30,415 - INFO - Processed 86800000 reads so far
2011-05-20 00:46:39,305 - INFO - Processed 86900000 reads so far
2011-05-20 00:46:46,972 - INFO - Processed 87000000 reads so far
2011-05-20 00:46:54,772 - INFO - Processed 87100000 reads so far
2011-05-20 00:47:02,660 - INFO - Processed 87200000 reads so far
2011-05-20 00:47:09,938 - INFO - Processed 87300000 reads so far
2011-05-20 00:47:17,573 - INFO - Processed 87400000 reads so far
2011-05-20 00:47:24,434 - INFO - Processed 87500000 reads so far
2011-05-20 00:47:31,410 - INFO - Processed 87600000 reads so far
2011-05-20 00:47:38,995 - INFO - Processed 87700000 reads so far
2011-05-20 00:47:48,445 - INFO - Processed 87800000 reads so far
2011-05-20 00:47:57,064 - INFO - Processed 87900000 reads so far
2011-05-20 00:48:03,691 - INFO - Processed 88000000 reads so far
2011-05-20 00:48:09,528 - INFO - Processed 88100000 reads so far
2011-05-20 00:48:16,336 - INFO - Processed 88200000 reads so far
2011-05-20 00:48:22,384 - INFO - Processed 88300000 reads so far
2011-05-20 00:48:28,907 - INFO - Processed 88400000 reads so far
2011-05-20 00:48:36,469 - INFO - Processed 88500000 reads so far
2011-05-20 00:48:43,399 - INFO - Processed 88600000 reads so far
2011-05-20 00:48:51,957 - INFO - Processed 88700000 reads so far
2011-05-20 00:48:59,869 - INFO - Processed 88800000 reads so far
2011-05-20 00:49:07,553 - INFO - Processed 88900000 reads so far
2011-05-20 00:49:14,887 - INFO - Processed 89000000 reads so far
2011-05-20 00:49:24,782 - INFO - Processed 89100000 reads so far
2011-05-20 00:49:33,587 - INFO - Processed 89200000 reads so far
2011-05-20 00:49:42,966 - INFO - Processed 89300000 reads so far
2011-05-20 00:49:50,378 - INFO - Processed 89400000 reads so far
2011-05-20 00:49:58,742 - INFO - Processed 89500000 reads so far
2011-05-20 00:50:08,817 - INFO - Processed 89600000 reads so far
2011-05-20 00:50:23,322 - INFO - Processed 89700000 reads so far
2011-05-20 00:50:34,409 - INFO - Processed 89800000 reads so far
2011-05-20 00:50:44,750 - INFO - Processed 89900000 reads so far
2011-05-20 00:50:53,669 - INFO - Processed 90000000 reads so far
2011-05-20 00:51:02,254 - INFO - Processed 90100000 reads so far
2011-05-20 00:51:09,095 - INFO - Processed 90200000 reads so far
2011-05-20 00:51:17,260 - INFO - Processed 90300000 reads so far
2011-05-20 00:51:27,146 - INFO - Processed 90400000 reads so far
2011-05-20 00:51:35,772 - INFO - Processed 90500000 reads so far
2011-05-20 00:51:44,007 - INFO - Processed 90600000 reads so far
2011-05-20 00:51:54,368 - INFO - Processed 90700000 reads so far
2011-05-20 00:52:02,269 - INFO - Processed 90800000 reads so far
2011-05-20 00:52:11,475 - INFO - Processed 90900000 reads so far
2011-05-20 00:52:21,014 - INFO - Processed 91000000 reads so far
2011-05-20 00:52:29,725 - INFO - Processed 91100000 reads so far
2011-05-20 00:52:40,538 - INFO - Processed 91200000 reads so far
2011-05-20 00:52:50,931 - INFO - Processed 91300000 reads so far
2011-05-20 00:53:00,678 - INFO - Processed 91400000 reads so far
2011-05-20 00:53:11,118 - INFO - Processed 91500000 reads so far
2011-05-20 00:53:21,298 - INFO - Processed 91600000 reads so far
2011-05-20 00:53:30,594 - INFO - Processed 91700000 reads so far
2011-05-20 00:53:39,606 - INFO - Processed 91800000 reads so far
2011-05-20 00:53:49,045 - INFO - Processed 91900000 reads so far
2011-05-20 00:53:57,548 - INFO - Processed 92000000 reads so far
2011-05-20 00:54:06,397 - INFO - Processed 92100000 reads so far
2011-05-20 00:54:17,938 - INFO - Processed 92200000 reads so far
2011-05-20 00:54:27,266 - INFO - Processed 92300000 reads so far
2011-05-20 00:54:36,141 - INFO - Processed 92400000 reads so far
2011-05-20 00:54:46,674 - INFO - Processed 92500000 reads so far
2011-05-20 00:54:56,927 - INFO - Processed 92600000 reads so far
2011-05-20 00:55:06,465 - INFO - Processed 92700000 reads so far
2011-05-20 00:55:16,272 - INFO - Processed 92800000 reads so far
2011-05-20 00:55:27,980 - INFO - Processed 92900000 reads so far
2011-05-20 00:55:35,340 - INFO - Processed 93000000 reads so far
2011-05-20 00:55:43,133 - INFO - Processed 93100000 reads so far
2011-05-20 00:55:52,766 - INFO - Processed 93200000 reads so far
2011-05-20 00:56:00,768 - INFO - Processed 93300000 reads so far
2011-05-20 00:56:11,914 - INFO - Processed 93400000 reads so far
2011-05-20 00:56:20,299 - INFO - Processed 93500000 reads so far
2011-05-20 00:56:28,606 - INFO - Processed 93600000 reads so far
2011-05-20 00:56:36,571 - INFO - Processed 93700000 reads so far
2011-05-20 00:56:45,780 - INFO - Processed 93800000 reads so far
2011-05-20 00:56:56,530 - INFO - Processed 93900000 reads so far
2011-05-20 00:57:06,764 - INFO - Processed 94000000 reads so far
2011-05-20 00:57:15,494 - INFO - Processed 94100000 reads so far
2011-05-20 00:57:25,940 - INFO - Processed 94200000 reads so far
2011-05-20 00:57:35,373 - INFO - Processed 94300000 reads so far
2011-05-20 00:57:44,073 - INFO - Processed 94400000 reads so far
2011-05-20 00:57:50,805 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:102990153-123010153
2011-05-20 00:57:54,978 - INFO - Processed 94500000 reads so far
2011-05-20 00:58:07,936 - INFO - Processed 94600000 reads so far
2011-05-20 00:58:18,416 - INFO - Processed 94700000 reads so far
2011-05-20 00:58:28,205 - INFO - Processed 94800000 reads so far
2011-05-20 00:58:38,460 - INFO - Processed 94900000 reads so far
2011-05-20 00:58:49,912 - INFO - Processed 95000000 reads so far
2011-05-20 00:58:59,696 - INFO - Processed 95100000 reads so far
2011-05-20 00:59:14,515 - INFO - Processed 95200000 reads so far
2011-05-20 00:59:25,901 - INFO - Processed 95300000 reads so far
2011-05-20 00:59:35,868 - INFO - Processed 95400000 reads so far
2011-05-20 00:59:48,041 - INFO - Processed 95500000 reads so far
2011-05-20 01:00:01,752 - INFO - Processed 95600000 reads so far
2011-05-20 01:00:10,078 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:122990162-143010162
2011-05-20 01:00:15,371 - INFO - Processed 95700000 reads so far
2011-05-20 01:00:26,472 - INFO - Processed 95800000 reads so far
2011-05-20 01:00:37,827 - INFO - Processed 95900000 reads so far
2011-05-20 01:00:52,942 - INFO - Processed 96000000 reads so far
2011-05-20 01:01:04,446 - INFO - Processed 96100000 reads so far
2011-05-20 01:01:16,382 - INFO - Processed 96200000 reads so far
2011-05-20 01:01:31,456 - INFO - Processed 96300000 reads so far
2011-05-20 01:01:42,044 - INFO - Processed 96400000 reads so far
2011-05-20 01:01:52,005 - INFO - Processed 96500000 reads so far
2011-05-20 01:02:02,542 - INFO - Processed 96600000 reads so far
2011-05-20 01:02:14,685 - INFO - Processed 96700000 reads so far
2011-05-20 01:02:25,735 - INFO - Processed 96800000 reads so far
2011-05-20 01:02:35,410 - INFO - Processed 96900000 reads so far
2011-05-20 01:02:35,873 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:142990186-163010186
2011-05-20 01:02:52,663 - INFO - Processed 97000000 reads so far
2011-05-20 01:03:04,253 - INFO - Processed 97100000 reads so far
2011-05-20 01:03:15,771 - INFO - Processed 97200000 reads so far
2011-05-20 01:03:27,712 - INFO - Processed 97300000 reads so far
2011-05-20 01:03:36,497 - INFO - Processed 97400000 reads so far
2011-05-20 01:03:46,194 - INFO - Processed 97500000 reads so far
2011-05-20 01:03:57,841 - INFO - Processed 97600000 reads so far
2011-05-20 01:04:07,548 - INFO - Processed 97700000 reads so far
2011-05-20 01:04:18,512 - INFO - Processed 97800000 reads so far
2011-05-20 01:04:27,297 - INFO - Processed 97900000 reads so far
2011-05-20 01:04:38,121 - INFO - Processed 98000000 reads so far
2011-05-20 01:04:50,663 - INFO - Processed 98100000 reads so far
2011-05-20 01:04:59,564 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:162990241-183010241
2011-05-20 01:05:01,571 - INFO - Processed 98200000 reads so far
2011-05-20 01:05:15,233 - INFO - Processed 98300000 reads so far
2011-05-20 01:05:27,422 - INFO - Processed 98400000 reads so far
2011-05-20 01:05:39,941 - INFO - Processed 98500000 reads so far
2011-05-20 01:05:49,141 - INFO - Processed 98600000 reads so far
2011-05-20 01:05:57,711 - INFO - Processed 98700000 reads so far
2011-05-20 01:06:04,520 - INFO - Processed 98800000 reads so far
2011-05-20 01:06:12,765 - INFO - Processed 98900000 reads so far
2011-05-20 01:06:22,729 - INFO - Processed 99000000 reads so far
2011-05-20 01:06:32,241 - INFO - Processed 99100000 reads so far
2011-05-20 01:06:40,798 - INFO - Processed 99200000 reads so far
2011-05-20 01:06:49,162 - INFO - Processed 99300000 reads so far
2011-05-20 01:06:59,028 - INFO - Processed 99400000 reads so far
2011-05-20 01:07:06,368 - INFO - Processed 99500000 reads so far
2011-05-20 01:07:07,186 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:2989998-23009998
2011-05-20 01:07:18,194 - INFO - Processed 99600000 reads so far
2011-05-20 01:07:29,327 - INFO - Processed 99700000 reads so far
2011-05-20 01:07:40,334 - INFO - Processed 99800000 reads so far
2011-05-20 01:07:51,504 - INFO - Processed 99900000 reads so far
2011-05-20 01:07:58,579 - INFO - Processed 100000000 reads so far
2011-05-20 01:08:07,511 - INFO - Processed 100100000 reads so far
2011-05-20 01:08:18,693 - INFO - Processed 100200000 reads so far
2011-05-20 01:08:31,207 - INFO - Processed 100300000 reads so far
2011-05-20 01:08:42,771 - INFO - Processed 100400000 reads so far
2011-05-20 01:08:53,627 - INFO - Processed 100500000 reads so far
2011-05-20 01:09:06,553 - INFO - Processed 100600000 reads so far
2011-05-20 01:09:13,436 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:22990010-43010010
2011-05-20 01:09:16,659 - INFO - Processed 100700000 reads so far
2011-05-20 01:09:26,307 - INFO - Processed 100800000 reads so far
2011-05-20 01:09:39,103 - INFO - Processed 100900000 reads so far
2011-05-20 01:09:48,895 - INFO - Processed 101000000 reads so far
2011-05-20 01:10:37,451 - INFO - Processed 101100000 reads so far
2011-05-20 01:11:35,146 - INFO - Processed 101200000 reads so far
2011-05-20 01:12:33,842 - INFO - Processed 101300000 reads so far
2011-05-20 01:13:05,938 - INFO - Processed 101400000 reads so far
2011-05-20 01:13:17,204 - INFO - Processed 101500000 reads so far
2011-05-20 01:13:34,232 - INFO - Processed 101600000 reads so far
2011-05-20 01:13:49,970 - INFO - Processed 101700000 reads so far
2011-05-20 01:14:02,331 - INFO - Processed 101800000 reads so far
2011-05-20 01:14:12,879 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:42990017-63010017
2011-05-20 01:14:14,386 - INFO - Processed 101900000 reads so far
2011-05-20 01:14:27,425 - INFO - Processed 102000000 reads so far
2011-05-20 01:14:38,484 - INFO - Processed 102100000 reads so far
2011-05-20 01:14:50,634 - INFO - Processed 102200000 reads so far
2011-05-20 01:15:01,776 - INFO - Processed 102300000 reads so far
2011-05-20 01:15:11,680 - INFO - Processed 102400000 reads so far
2011-05-20 01:15:22,453 - INFO - Processed 102500000 reads so far
2011-05-20 01:15:35,441 - INFO - Processed 102600000 reads so far
2011-05-20 01:15:44,921 - INFO - Processed 102700000 reads so far
2011-05-20 01:15:57,162 - INFO - Processed 102800000 reads so far
2011-05-20 01:16:05,659 - INFO - Processed 102900000 reads so far
2011-05-20 01:16:15,777 - INFO - Processed 103000000 reads so far
2011-05-20 01:16:20,719 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:62990027-83010027
2011-05-20 01:16:27,988 - INFO - Processed 103100000 reads so far
2011-05-20 01:16:39,381 - INFO - Processed 103200000 reads so far
2011-05-20 01:16:50,842 - INFO - Processed 103300000 reads so far
2011-05-20 01:17:01,830 - INFO - Processed 103400000 reads so far
2011-05-20 01:17:14,185 - INFO - Processed 103500000 reads so far
2011-05-20 01:17:25,668 - INFO - Processed 103600000 reads so far
2011-05-20 01:17:37,111 - INFO - Processed 103700000 reads so far
2011-05-20 01:17:50,989 - INFO - Processed 103800000 reads so far
2011-05-20 01:18:03,757 - INFO - Processed 103900000 reads so far
2011-05-20 01:18:14,529 - INFO - Processed 104000000 reads so far
2011-05-20 01:18:25,760 - INFO - Processed 104100000 reads so far
2011-05-20 01:18:36,638 - INFO - Processed 104200000 reads so far
2011-05-20 01:18:37,274 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:82990034-103010034
2011-05-20 01:18:48,901 - INFO - Processed 104300000 reads so far
2011-05-20 01:19:00,216 - INFO - Processed 104400000 reads so far
2011-05-20 01:19:11,989 - INFO - Processed 104500000 reads so far
2011-05-20 01:19:22,979 - INFO - Processed 104600000 reads so far
2011-05-20 01:19:30,864 - INFO - Processed 104700000 reads so far
2011-05-20 01:19:41,120 - INFO - Processed 104800000 reads so far
2011-05-20 01:19:50,389 - INFO - Processed 104900000 reads so far
2011-05-20 01:20:05,587 - INFO - Processed 105000000 reads so far
2011-05-20 01:20:17,313 - INFO - Processed 105100000 reads so far
2011-05-20 01:20:30,525 - INFO - Processed 105200000 reads so far
2011-05-20 01:20:41,275 - INFO - Processed 105300000 reads so far
2011-05-20 01:20:50,539 - INFO - Processed 105400000 reads so far
2011-05-20 01:20:57,795 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:102990046-123010046
2011-05-20 01:21:01,609 - INFO - Processed 105500000 reads so far
2011-05-20 01:21:12,817 - INFO - Processed 105600000 reads so far
2011-05-20 01:21:26,048 - INFO - Processed 105700000 reads so far
2011-05-20 01:21:39,496 - INFO - Processed 105800000 reads so far
2011-05-20 01:21:51,239 - INFO - Processed 105900000 reads so far
2011-05-20 01:22:03,079 - INFO - Processed 106000000 reads so far
2011-05-20 01:22:15,906 - INFO - Processed 106100000 reads so far
2011-05-20 01:22:27,786 - INFO - Processed 106200000 reads so far
2011-05-20 01:22:39,142 - INFO - Processed 106300000 reads so far
2011-05-20 01:22:51,355 - INFO - Processed 106400000 reads so far
2011-05-20 01:23:02,547 - INFO - Processed 106500000 reads so far
2011-05-20 01:23:12,651 - INFO - Processed 106600000 reads so far
2011-05-20 01:23:18,609 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:122990062-143010062
2011-05-20 01:23:24,616 - INFO - Processed 106700000 reads so far
2011-05-20 01:23:33,441 - INFO - Processed 106800000 reads so far
2011-05-20 01:23:41,942 - INFO - Processed 106900000 reads so far
2011-05-20 01:23:51,534 - INFO - Processed 107000000 reads so far
2011-05-20 01:24:01,688 - INFO - Processed 107100000 reads so far
2011-05-20 01:24:12,114 - INFO - Processed 107200000 reads so far
2011-05-20 01:24:22,144 - INFO - Processed 107300000 reads so far
2011-05-20 01:24:33,751 - INFO - Processed 107400000 reads so far
2011-05-20 01:24:42,370 - INFO - Processed 107500000 reads so far
2011-05-20 01:24:50,898 - INFO - Processed 107600000 reads so far
2011-05-20 01:24:58,746 - INFO - Processed 107700000 reads so far
2011-05-20 01:25:10,189 - INFO - Processed 107800000 reads so far
2011-05-20 01:25:18,824 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:142990065-163010065
2011-05-20 01:25:21,513 - INFO - Processed 107900000 reads so far
2011-05-20 01:25:30,660 - INFO - Processed 108000000 reads so far
2011-05-20 01:25:40,440 - INFO - Processed 108100000 reads so far
2011-05-20 01:25:50,056 - INFO - Processed 108200000 reads so far
2011-05-20 01:25:59,966 - INFO - Processed 108300000 reads so far
2011-05-20 01:26:09,751 - INFO - Processed 108400000 reads so far
2011-05-20 01:26:20,825 - INFO - Processed 108500000 reads so far
2011-05-20 01:26:32,025 - INFO - Processed 108600000 reads so far
2011-05-20 01:26:43,378 - INFO - Processed 108700000 reads so far
2011-05-20 01:26:55,060 - INFO - Processed 108800000 reads so far
2011-05-20 01:27:07,066 - INFO - Processed 108900000 reads so far
2011-05-20 01:27:07,429 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3_random:0-20010093
2011-05-20 01:27:07,593 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:2989977-23009977
2011-05-20 01:27:17,093 - INFO - Processed 109000000 reads so far
2011-05-20 01:27:29,698 - INFO - Processed 109100000 reads so far
2011-05-20 01:27:39,382 - INFO - Processed 109200000 reads so far
2011-05-20 01:27:49,137 - INFO - Processed 109300000 reads so far
2011-05-20 01:27:59,133 - INFO - Processed 109400000 reads so far
2011-05-20 01:28:10,284 - INFO - Processed 109500000 reads so far
2011-05-20 01:28:21,125 - INFO - Processed 109600000 reads so far
2011-05-20 01:28:35,581 - INFO - Processed 109700000 reads so far
2011-05-20 01:28:43,866 - INFO - Processed 109800000 reads so far
2011-05-20 01:28:54,565 - INFO - Processed 109900000 reads so far
2011-05-20 01:29:05,975 - INFO - Processed 110000000 reads so far
2011-05-20 01:29:15,030 - INFO - Processed 110100000 reads so far
2011-05-20 01:29:17,880 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:22989979-43009979
2011-05-20 01:29:25,956 - INFO - Processed 110200000 reads so far
2011-05-20 01:29:36,807 - INFO - Processed 110300000 reads so far
2011-05-20 01:29:48,232 - INFO - Processed 110400000 reads so far
2011-05-20 01:29:58,965 - INFO - Processed 110500000 reads so far
2011-05-20 01:30:09,094 - INFO - Processed 110600000 reads so far
2011-05-20 01:30:19,799 - INFO - Processed 110700000 reads so far
2011-05-20 01:30:30,613 - INFO - Processed 110800000 reads so far
2011-05-20 01:30:40,986 - INFO - Processed 110900000 reads so far
2011-05-20 01:30:51,091 - INFO - Processed 111000000 reads so far
2011-05-20 01:31:01,929 - INFO - Processed 111100000 reads so far
2011-05-20 01:31:10,882 - INFO - Processed 111200000 reads so far
2011-05-20 01:31:16,155 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:42989996-63009996
2011-05-20 01:31:23,401 - INFO - Processed 111300000 reads so far
2011-05-20 01:31:41,834 - INFO - Processed 111400000 reads so far
2011-05-20 01:31:52,664 - INFO - Processed 111500000 reads so far
2011-05-20 01:32:07,553 - INFO - Processed 111600000 reads so far
2011-05-20 01:32:18,380 - INFO - Processed 111700000 reads so far
2011-05-20 01:32:29,794 - INFO - Processed 111800000 reads so far
2011-05-20 01:32:41,811 - INFO - Processed 111900000 reads so far
2011-05-20 01:32:52,160 - INFO - Processed 112000000 reads so far
2011-05-20 01:33:03,038 - INFO - Processed 112100000 reads so far
2011-05-20 01:33:11,991 - INFO - Processed 112200000 reads so far
2011-05-20 01:33:24,330 - INFO - Processed 112300000 reads so far
2011-05-20 01:33:34,542 - INFO - Processed 112400000 reads so far
2011-05-20 01:33:44,578 - INFO - Processed 112500000 reads so far
2011-05-20 01:33:44,894 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:62990001-83010001
2011-05-20 01:33:57,665 - INFO - Processed 112600000 reads so far
2011-05-20 01:34:06,958 - INFO - Processed 112700000 reads so far
2011-05-20 01:34:16,467 - INFO - Processed 112800000 reads so far
2011-05-20 01:34:28,239 - INFO - Processed 112900000 reads so far
2011-05-20 01:34:37,240 - INFO - Processed 113000000 reads so far
2011-05-20 01:34:47,913 - INFO - Processed 113100000 reads so far
2011-05-20 01:34:58,978 - INFO - Processed 113200000 reads so far
2011-05-20 01:35:08,389 - INFO - Processed 113300000 reads so far
2011-05-20 01:35:17,837 - INFO - Processed 113400000 reads so far
2011-05-20 01:35:26,566 - INFO - Processed 113500000 reads so far
2011-05-20 01:35:35,906 - INFO - Processed 113600000 reads so far
2011-05-20 01:35:42,388 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:82990023-103010023
2011-05-20 01:35:45,148 - INFO - Processed 113700000 reads so far
2011-05-20 01:35:57,141 - INFO - Processed 113800000 reads so far
2011-05-20 01:36:06,383 - INFO - Processed 113900000 reads so far
2011-05-20 01:36:14,975 - INFO - Processed 114000000 reads so far
2011-05-20 01:36:23,480 - INFO - Processed 114100000 reads so far
2011-05-20 01:36:35,830 - INFO - Processed 114200000 reads so far
2011-05-20 01:36:46,209 - INFO - Processed 114300000 reads so far
2011-05-20 01:36:57,807 - INFO - Processed 114400000 reads so far
2011-05-20 01:37:08,202 - INFO - Processed 114500000 reads so far
2011-05-20 01:37:19,001 - INFO - Processed 114600000 reads so far
2011-05-20 01:37:28,916 - INFO - Processed 114700000 reads so far
2011-05-20 01:37:40,001 - INFO - Processed 114800000 reads so far
2011-05-20 01:37:51,339 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:102990029-123010029
2011-05-20 01:37:51,533 - INFO - Processed 114900000 reads so far
2011-05-20 01:38:02,822 - INFO - Processed 115000000 reads so far
2011-05-20 01:38:13,740 - INFO - Processed 115100000 reads so far
2011-05-20 01:38:25,435 - INFO - Processed 115200000 reads so far
2011-05-20 01:38:39,892 - INFO - Processed 115300000 reads so far
2011-05-20 01:38:51,245 - INFO - Processed 115400000 reads so far
2011-05-20 01:39:02,788 - INFO - Processed 115500000 reads so far
2011-05-20 01:39:16,488 - INFO - Processed 115600000 reads so far
2011-05-20 01:39:27,445 - INFO - Processed 115700000 reads so far
2011-05-20 01:39:39,033 - INFO - Processed 115800000 reads so far
2011-05-20 01:39:51,814 - INFO - Processed 115900000 reads so far
2011-05-20 01:40:03,074 - INFO - Processed 116000000 reads so far
2011-05-20 01:40:07,043 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:122990042-143010042
2011-05-20 01:40:14,662 - INFO - Processed 116100000 reads so far
2011-05-20 01:40:26,890 - INFO - Processed 116200000 reads so far
2011-05-20 01:40:38,731 - INFO - Processed 116300000 reads so far
2011-05-20 01:40:49,983 - INFO - Processed 116400000 reads so far
2011-05-20 01:41:02,117 - INFO - Processed 116500000 reads so far
2011-05-20 01:41:13,796 - INFO - Processed 116600000 reads so far
2011-05-20 01:41:25,340 - INFO - Processed 116700000 reads so far
2011-05-20 01:41:36,830 - INFO - Processed 116800000 reads so far
2011-05-20 01:41:47,953 - INFO - Processed 116900000 reads so far
2011-05-20 01:41:59,507 - INFO - Processed 117000000 reads so far
2011-05-20 01:42:12,045 - INFO - Processed 117100000 reads so far
2011-05-20 01:42:23,448 - INFO - Processed 117200000 reads so far
2011-05-20 01:42:34,380 - INFO - Processed 117300000 reads so far
2011-05-20 01:42:38,308 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:142990049-163010049
2011-05-20 01:42:45,819 - INFO - Processed 117400000 reads so far
2011-05-20 01:42:59,447 - INFO - Processed 117500000 reads so far
2011-05-20 01:43:09,561 - INFO - Processed 117600000 reads so far
2011-05-20 01:43:20,133 - INFO - Processed 117700000 reads so far
2011-05-20 01:43:30,802 - INFO - Processed 117800000 reads so far
2011-05-20 01:43:42,160 - INFO - Processed 117900000 reads so far
2011-05-20 01:43:55,579 - INFO - Processed 118000000 reads so far
2011-05-20 01:44:06,805 - INFO - Processed 118100000 reads so far
2011-05-20 01:44:18,884 - INFO - Processed 118200000 reads so far
2011-05-20 01:44:30,390 - INFO - Processed 118300000 reads so far
2011-05-20 01:44:36,628 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4_random:0-20010001
2011-05-20 01:44:37,832 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:2990000-23010000
2011-05-20 01:44:41,179 - INFO - Processed 118400000 reads so far
2011-05-20 01:44:48,045 - INFO - Processed 118500000 reads so far
2011-05-20 01:44:58,086 - INFO - Processed 118600000 reads so far
2011-05-20 01:45:06,448 - INFO - Processed 118700000 reads so far
2011-05-20 01:45:14,884 - INFO - Processed 118800000 reads so far
2011-05-20 01:45:21,601 - INFO - Processed 118900000 reads so far
2011-05-20 01:45:30,035 - INFO - Processed 119000000 reads so far
2011-05-20 01:45:37,397 - INFO - Processed 119100000 reads so far
2011-05-20 01:45:44,190 - INFO - Processed 119200000 reads so far
2011-05-20 01:45:50,992 - INFO - Processed 119300000 reads so far
2011-05-20 01:45:59,938 - INFO - Processed 119400000 reads so far
2011-05-20 01:46:07,278 - INFO - Processed 119500000 reads so far
2011-05-20 01:46:15,196 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:22990003-43010003
2011-05-20 01:46:16,664 - INFO - Processed 119600000 reads so far
2011-05-20 01:46:28,325 - INFO - Processed 119700000 reads so far
2011-05-20 01:46:40,456 - INFO - Processed 119800000 reads so far
2011-05-20 01:46:51,172 - INFO - Processed 119900000 reads so far
2011-05-20 01:46:59,755 - INFO - Processed 120000000 reads so far
2011-05-20 01:47:08,997 - INFO - Processed 120100000 reads so far
2011-05-20 01:47:18,964 - INFO - Processed 120200000 reads so far
2011-05-20 01:47:28,059 - INFO - Processed 120300000 reads so far
2011-05-20 01:47:35,666 - INFO - Processed 120400000 reads so far
2011-05-20 01:47:43,404 - INFO - Processed 120500000 reads so far
2011-05-20 01:47:51,510 - INFO - Processed 120600000 reads so far
2011-05-20 01:48:01,246 - INFO - Processed 120700000 reads so far
2011-05-20 01:48:12,887 - INFO - Processed 120800000 reads so far
2011-05-20 01:48:18,881 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:42990009-63010009
2011-05-20 01:48:23,899 - INFO - Processed 120900000 reads so far
2011-05-20 01:48:35,442 - INFO - Processed 121000000 reads so far
2011-05-20 01:48:49,139 - INFO - Processed 121100000 reads so far
2011-05-20 01:48:56,971 - INFO - Processed 121200000 reads so far
2011-05-20 01:49:03,871 - INFO - Processed 121300000 reads so far
2011-05-20 01:49:12,782 - INFO - Processed 121400000 reads so far
2011-05-20 01:49:22,742 - INFO - Processed 121500000 reads so far
2011-05-20 01:49:29,701 - INFO - Processed 121600000 reads so far
2011-05-20 01:49:38,336 - INFO - Processed 121700000 reads so far
2011-05-20 01:49:49,748 - INFO - Processed 121800000 reads so far
2011-05-20 01:50:00,088 - INFO - Processed 121900000 reads so far
2011-05-20 01:50:10,930 - INFO - Processed 122000000 reads so far
2011-05-20 01:50:11,357 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:62990017-83010017
2011-05-20 01:50:19,161 - INFO - Processed 122100000 reads so far
2011-05-20 01:50:28,053 - INFO - Processed 122200000 reads so far
2011-05-20 01:50:38,372 - INFO - Processed 122300000 reads so far
2011-05-20 01:50:46,858 - INFO - Processed 122400000 reads so far
2011-05-20 01:50:57,570 - INFO - Processed 122500000 reads so far
2011-05-20 01:51:05,903 - INFO - Processed 122600000 reads so far
2011-05-20 01:51:17,509 - INFO - Processed 122700000 reads so far
2011-05-20 01:51:26,870 - INFO - Processed 122800000 reads so far
2011-05-20 01:51:36,146 - INFO - Processed 122900000 reads so far
2011-05-20 01:51:43,183 - INFO - Processed 123000000 reads so far
2011-05-20 01:51:54,054 - INFO - Processed 123100000 reads so far
2011-05-20 01:52:03,875 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:82990059-103010059
2011-05-20 01:52:05,106 - INFO - Processed 123200000 reads so far
2011-05-20 01:52:16,899 - INFO - Processed 123300000 reads so far
2011-05-20 01:52:25,255 - INFO - Processed 123400000 reads so far
2011-05-20 01:52:32,267 - INFO - Processed 123500000 reads so far
2011-05-20 01:52:42,477 - INFO - Processed 123600000 reads so far
2011-05-20 01:52:54,851 - INFO - Processed 123700000 reads so far
2011-05-20 01:53:04,341 - INFO - Processed 123800000 reads so far
2011-05-20 01:53:14,692 - INFO - Processed 123900000 reads so far
2011-05-20 01:53:23,123 - INFO - Processed 124000000 reads so far
2011-05-20 01:53:33,878 - INFO - Processed 124100000 reads so far
2011-05-20 01:53:42,380 - INFO - Processed 124200000 reads so far
2011-05-20 01:53:51,698 - INFO - Processed 124300000 reads so far
2011-05-20 01:53:53,510 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:102990074-123010074
2011-05-20 01:54:01,931 - INFO - Processed 124400000 reads so far
2011-05-20 01:54:11,870 - INFO - Processed 124500000 reads so far
2011-05-20 01:54:21,332 - INFO - Processed 124600000 reads so far
2011-05-20 01:54:30,831 - INFO - Processed 124700000 reads so far
2011-05-20 01:54:37,856 - INFO - Processed 124800000 reads so far
2011-05-20 01:54:47,766 - INFO - Processed 124900000 reads so far
2011-05-20 01:54:57,224 - INFO - Processed 125000000 reads so far
2011-05-20 01:55:07,439 - INFO - Processed 125100000 reads so far
2011-05-20 01:55:16,126 - INFO - Processed 125200000 reads so far
2011-05-20 01:55:23,340 - INFO - Processed 125300000 reads so far
2011-05-20 01:55:31,139 - INFO - Processed 125400000 reads so far
2011-05-20 01:55:37,870 - INFO - Processed 125500000 reads so far
2011-05-20 01:55:47,750 - INFO - Processed 125600000 reads so far
2011-05-20 01:55:50,608 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:122990081-143010081
2011-05-20 01:55:57,581 - INFO - Processed 125700000 reads so far
2011-05-20 01:56:10,848 - INFO - Processed 125800000 reads so far
2011-05-20 01:56:21,624 - INFO - Processed 125900000 reads so far
2011-05-20 01:56:32,909 - INFO - Processed 126000000 reads so far
2011-05-20 01:56:45,261 - INFO - Processed 126100000 reads so far
2011-05-20 01:56:57,180 - INFO - Processed 126200000 reads so far
2011-05-20 01:57:08,214 - INFO - Processed 126300000 reads so far
2011-05-20 01:57:18,882 - INFO - Processed 126400000 reads so far
2011-05-20 01:57:26,106 - INFO - Processed 126500000 reads so far
2011-05-20 01:57:33,326 - INFO - Processed 126600000 reads so far
2011-05-20 01:57:44,185 - INFO - Processed 126700000 reads so far
2011-05-20 01:57:53,784 - INFO - Processed 126800000 reads so far
2011-05-20 01:58:03,661 - INFO - Processed 126900000 reads so far
2011-05-20 01:58:06,499 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:142990099-163010099
2011-05-20 01:58:12,274 - INFO - Processed 127000000 reads so far
2011-05-20 01:58:24,169 - INFO - Processed 127100000 reads so far
2011-05-20 01:58:34,392 - INFO - Processed 127200000 reads so far
2011-05-20 01:58:43,715 - INFO - Processed 127300000 reads so far
2011-05-20 01:58:53,970 - INFO - Processed 127400000 reads so far
2011-05-20 01:59:05,184 - INFO - Processed 127500000 reads so far
2011-05-20 01:59:09,303 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5_random:0-20010214
2011-05-20 01:59:09,753 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:2990004-23010004
2011-05-20 01:59:15,553 - INFO - Processed 127600000 reads so far
2011-05-20 01:59:24,432 - INFO - Processed 127700000 reads so far
2011-05-20 01:59:34,427 - INFO - Processed 127800000 reads so far
2011-05-20 01:59:43,744 - INFO - Processed 127900000 reads so far
2011-05-20 01:59:53,303 - INFO - Processed 128000000 reads so far
2011-05-20 02:00:09,601 - INFO - Processed 128100000 reads so far
2011-05-20 02:00:20,737 - INFO - Processed 128200000 reads so far
2011-05-20 02:00:29,430 - INFO - Processed 128300000 reads so far
2011-05-20 02:00:39,096 - INFO - Processed 128400000 reads so far
2011-05-20 02:00:50,549 - INFO - Processed 128500000 reads so far
2011-05-20 02:01:02,024 - INFO - Processed 128600000 reads so far
2011-05-20 02:01:13,836 - INFO - Processed 128700000 reads so far
2011-05-20 02:01:15,042 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:22990034-43010034
2011-05-20 02:01:26,088 - INFO - Processed 128800000 reads so far
2011-05-20 02:01:39,946 - INFO - Processed 128900000 reads so far
2011-05-20 02:01:49,969 - INFO - Processed 129000000 reads so far
2011-05-20 02:02:00,566 - INFO - Processed 129100000 reads so far
2011-05-20 02:02:10,999 - INFO - Processed 129200000 reads so far
2011-05-20 02:02:19,490 - INFO - Processed 129300000 reads so far
2011-05-20 02:02:28,980 - INFO - Processed 129400000 reads so far
2011-05-20 02:02:40,130 - INFO - Processed 129500000 reads so far
2011-05-20 02:02:51,910 - INFO - Processed 129600000 reads so far
2011-05-20 02:03:05,208 - INFO - Processed 129700000 reads so far
2011-05-20 02:03:17,493 - INFO - Processed 129800000 reads so far
2011-05-20 02:03:29,054 - INFO - Processed 129900000 reads so far
2011-05-20 02:03:32,984 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:42990061-63010061
2011-05-20 02:03:40,535 - INFO - Processed 130000000 reads so far
2011-05-20 02:03:53,235 - INFO - Processed 130100000 reads so far
2011-05-20 02:04:04,336 - INFO - Processed 130200000 reads so far
2011-05-20 02:04:15,515 - INFO - Processed 130300000 reads so far
2011-05-20 02:04:26,937 - INFO - Processed 130400000 reads so far
2011-05-20 02:04:38,182 - INFO - Processed 130500000 reads so far
2011-05-20 02:04:50,712 - INFO - Processed 130600000 reads so far
2011-05-20 02:05:02,464 - INFO - Processed 130700000 reads so far
2011-05-20 02:05:12,993 - INFO - Processed 130800000 reads so far
2011-05-20 02:05:21,215 - INFO - Processed 130900000 reads so far
2011-05-20 02:05:32,219 - INFO - Processed 131000000 reads so far
2011-05-20 02:05:43,614 - INFO - Processed 131100000 reads so far
2011-05-20 02:05:55,145 - INFO - Processed 131200000 reads so far
2011-05-20 02:05:57,411 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:62990139-83010139
2011-05-20 02:06:06,768 - INFO - Processed 131300000 reads so far
2011-05-20 02:06:17,369 - INFO - Processed 131400000 reads so far
2011-05-20 02:06:29,400 - INFO - Processed 131500000 reads so far
2011-05-20 02:06:38,738 - INFO - Processed 131600000 reads so far
2011-05-20 02:06:50,378 - INFO - Processed 131700000 reads so far
2011-05-20 02:07:00,064 - INFO - Processed 131800000 reads so far
2011-05-20 02:07:09,672 - INFO - Processed 131900000 reads so far
2011-05-20 02:07:18,537 - INFO - Processed 132000000 reads so far
2011-05-20 02:07:28,116 - INFO - Processed 132100000 reads so far
2011-05-20 02:07:38,084 - INFO - Processed 132200000 reads so far
2011-05-20 02:07:49,616 - INFO - Processed 132300000 reads so far
2011-05-20 02:07:58,620 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:82990154-103010154
2011-05-20 02:08:01,755 - INFO - Processed 132400000 reads so far
2011-05-20 02:08:10,740 - INFO - Processed 132500000 reads so far
2011-05-20 02:08:22,201 - INFO - Processed 132600000 reads so far
2011-05-20 02:08:33,845 - INFO - Processed 132700000 reads so far
2011-05-20 02:08:45,179 - INFO - Processed 132800000 reads so far
2011-05-20 02:08:56,574 - INFO - Processed 132900000 reads so far
2011-05-20 02:09:07,667 - INFO - Processed 133000000 reads so far
2011-05-20 02:09:18,561 - INFO - Processed 133100000 reads so far
2011-05-20 02:09:29,982 - INFO - Processed 133200000 reads so far
2011-05-20 02:10:11,553 - INFO - Processed 133300000 reads so far
2011-05-20 02:10:27,540 - INFO - Processed 133400000 reads so far
2011-05-20 02:10:48,105 - INFO - Processed 133500000 reads so far
2011-05-20 02:10:59,372 - INFO - Processed 133600000 reads so far
2011-05-20 02:11:07,422 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:102990161-123010161
2011-05-20 02:11:11,347 - INFO - Processed 133700000 reads so far
2011-05-20 02:11:46,719 - INFO - Processed 133800000 reads so far
2011-05-20 02:11:57,506 - INFO - Processed 133900000 reads so far
2011-05-20 02:12:08,411 - INFO - Processed 134000000 reads so far
2011-05-20 02:12:17,370 - INFO - Processed 134100000 reads so far
2011-05-20 02:12:26,024 - INFO - Processed 134200000 reads so far
2011-05-20 02:12:34,835 - INFO - Processed 134300000 reads so far
2011-05-20 02:12:53,364 - INFO - Processed 134400000 reads so far
2011-05-20 02:13:01,380 - INFO - Processed 134500000 reads so far
2011-05-20 02:13:28,079 - INFO - Processed 134600000 reads so far
2011-05-20 02:13:37,974 - INFO - Processed 134700000 reads so far
2011-05-20 02:13:51,539 - INFO - Processed 134800000 reads so far
2011-05-20 02:14:07,385 - INFO - Processed 134900000 reads so far
2011-05-20 02:14:18,475 - INFO - Processed 135000000 reads so far
2011-05-20 02:14:29,060 - INFO - Processed 135100000 reads so far
2011-05-20 02:14:38,366 - INFO - Processed 135200000 reads so far
2011-05-20 02:14:50,267 - INFO - Processed 135300000 reads so far
2011-05-20 02:15:08,170 - INFO - Processed 135400000 reads so far
2011-05-20 02:15:34,967 - INFO - Processed 135500000 reads so far
2011-05-20 02:15:51,761 - INFO - Processed 135600000 reads so far
2011-05-20 02:16:06,008 - INFO - Processed 135700000 reads so far
2011-05-20 02:16:15,679 - INFO - Processed 135800000 reads so far
2011-05-20 02:16:27,660 - INFO - Processed 135900000 reads so far
2011-05-20 02:16:40,638 - INFO - Processed 136000000 reads so far
2011-05-20 02:16:41,280 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:122990169-143010169
2011-05-20 02:16:52,801 - INFO - Processed 136100000 reads so far
2011-05-20 02:17:04,479 - INFO - Processed 136200000 reads so far
2011-05-20 02:17:16,550 - INFO - Processed 136300000 reads so far
2011-05-20 02:17:27,933 - INFO - Processed 136400000 reads so far
2011-05-20 02:17:40,120 - INFO - Processed 136500000 reads so far
2011-05-20 02:17:51,177 - INFO - Processed 136600000 reads so far
2011-05-20 02:17:58,815 - INFO - Processed 136700000 reads so far
2011-05-20 02:18:08,304 - INFO - Processed 136800000 reads so far
2011-05-20 02:18:17,693 - INFO - Processed 136900000 reads so far
2011-05-20 02:18:26,288 - INFO - Processed 137000000 reads so far
2011-05-20 02:18:35,164 - INFO - Processed 137100000 reads so far
2011-05-20 02:18:44,159 - INFO - Processed 137200000 reads so far
2011-05-20 02:18:45,819 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:142990187-163010187
2011-05-20 02:18:52,380 - INFO - Processed 137300000 reads so far
2011-05-20 02:19:01,058 - INFO - Processed 137400000 reads so far
2011-05-20 02:19:09,769 - INFO - Processed 137500000 reads so far
2011-05-20 02:19:18,226 - INFO - Processed 137600000 reads so far
2011-05-20 02:19:21,545 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:2990041-23010041
2011-05-20 02:19:30,413 - INFO - Processed 137700000 reads so far
2011-05-20 02:19:40,334 - INFO - Processed 137800000 reads so far
2011-05-20 02:19:51,662 - INFO - Processed 137900000 reads so far
2011-05-20 02:20:05,167 - INFO - Processed 138000000 reads so far
2011-05-20 02:20:15,915 - INFO - Processed 138100000 reads so far
2011-05-20 02:20:27,346 - INFO - Processed 138200000 reads so far
2011-05-20 02:20:40,302 - INFO - Processed 138300000 reads so far
2011-05-20 02:20:50,474 - INFO - Processed 138400000 reads so far
2011-05-20 02:21:00,824 - INFO - Processed 138500000 reads so far
2011-05-20 02:21:12,086 - INFO - Processed 138600000 reads so far
2011-05-20 02:21:21,677 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:22990071-43010071
2011-05-20 02:21:22,117 - INFO - Processed 138700000 reads so far
2011-05-20 02:21:32,845 - INFO - Processed 138800000 reads so far
2011-05-20 02:21:43,179 - INFO - Processed 138900000 reads so far
2011-05-20 02:21:55,123 - INFO - Processed 139000000 reads so far
2011-05-20 02:22:06,561 - INFO - Processed 139100000 reads so far
2011-05-20 02:22:17,249 - INFO - Processed 139200000 reads so far
2011-05-20 02:22:28,814 - INFO - Processed 139300000 reads so far
2011-05-20 02:22:40,095 - INFO - Processed 139400000 reads so far
2011-05-20 02:22:50,574 - INFO - Processed 139500000 reads so far
2011-05-20 02:23:01,923 - INFO - Processed 139600000 reads so far
2011-05-20 02:23:12,601 - INFO - Processed 139700000 reads so far
2011-05-20 02:23:15,075 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:46351885-66371885
2011-05-20 02:23:20,871 - INFO - Processed 139800000 reads so far
2011-05-20 02:23:30,051 - INFO - Processed 139900000 reads so far
2011-05-20 02:23:41,951 - INFO - Processed 140000000 reads so far
2011-05-20 02:23:51,228 - INFO - Processed 140100000 reads so far
2011-05-20 02:24:00,683 - INFO - Processed 140200000 reads so far
2011-05-20 02:24:13,023 - INFO - Processed 140300000 reads so far
2011-05-20 02:24:23,364 - INFO - Processed 140400000 reads so far
2011-05-20 02:24:32,087 - INFO - Processed 140500000 reads so far
2011-05-20 02:24:41,370 - INFO - Processed 140600000 reads so far
2011-05-20 02:24:50,804 - INFO - Processed 140700000 reads so far
2011-05-20 02:24:59,187 - INFO - Processed 140800000 reads so far
2011-05-20 02:25:08,327 - INFO - Processed 140900000 reads so far
2011-05-20 02:25:11,311 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:66351888-86371888
2011-05-20 02:25:20,612 - INFO - Processed 141000000 reads so far
2011-05-20 02:25:31,994 - INFO - Processed 141100000 reads so far
2011-05-20 02:25:43,365 - INFO - Processed 141200000 reads so far
2011-05-20 02:25:54,368 - INFO - Processed 141300000 reads so far
2011-05-20 02:26:05,469 - INFO - Processed 141400000 reads so far
2011-05-20 02:26:17,678 - INFO - Processed 141500000 reads so far
2011-05-20 02:26:24,551 - INFO - Processed 141600000 reads so far
2011-05-20 02:26:33,499 - INFO - Processed 141700000 reads so far
2011-05-20 02:26:45,142 - INFO - Processed 141800000 reads so far
2011-05-20 02:26:58,176 - INFO - Processed 141900000 reads so far
2011-05-20 02:27:08,091 - INFO - Processed 142000000 reads so far
2011-05-20 02:27:19,336 - INFO - Processed 142100000 reads so far
2011-05-20 02:27:32,576 - INFO - Processed 142200000 reads so far
2011-05-20 02:27:32,949 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:86351903-106371903
2011-05-20 02:27:44,430 - INFO - Processed 142300000 reads so far
2011-05-20 02:27:56,356 - INFO - Processed 142400000 reads so far
2011-05-20 02:28:05,703 - INFO - Processed 142500000 reads so far
2011-05-20 02:28:16,294 - INFO - Processed 142600000 reads so far
2011-05-20 02:28:25,957 - INFO - Processed 142700000 reads so far
2011-05-20 02:28:35,467 - INFO - Processed 142800000 reads so far
2011-05-20 02:28:45,833 - INFO - Processed 142900000 reads so far
2011-05-20 02:28:57,082 - INFO - Processed 143000000 reads so far
2011-05-20 02:29:08,643 - INFO - Processed 143100000 reads so far
2011-05-20 02:29:20,270 - INFO - Processed 143200000 reads so far
2011-05-20 02:29:31,541 - INFO - Processed 143300000 reads so far
2011-05-20 02:29:42,252 - INFO - Processed 143400000 reads so far
2011-05-20 02:29:44,269 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:106351940-126371940
2011-05-20 02:29:51,717 - INFO - Processed 143500000 reads so far
2011-05-20 02:30:03,479 - INFO - Processed 143600000 reads so far
2011-05-20 02:30:14,978 - INFO - Processed 143700000 reads so far
2011-05-20 02:30:26,326 - INFO - Processed 143800000 reads so far
2011-05-20 02:30:37,672 - INFO - Processed 143900000 reads so far
2011-05-20 02:30:48,811 - INFO - Processed 144000000 reads so far
2011-05-20 02:31:00,165 - INFO - Processed 144100000 reads so far
2011-05-20 02:31:15,265 - INFO - Processed 144200000 reads so far
2011-05-20 02:31:26,564 - INFO - Processed 144300000 reads so far
2011-05-20 02:31:37,464 - INFO - Processed 144400000 reads so far
2011-05-20 02:31:48,921 - INFO - Processed 144500000 reads so far
2011-05-20 02:32:00,472 - INFO - Processed 144600000 reads so far
2011-05-20 02:32:10,762 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:126351953-146371953
2011-05-20 02:32:11,684 - INFO - Processed 144700000 reads so far
2011-05-20 02:32:24,540 - INFO - Processed 144800000 reads so far
2011-05-20 02:32:35,730 - INFO - Processed 144900000 reads so far
2011-05-20 02:32:46,887 - INFO - Processed 145000000 reads so far
2011-05-20 02:32:59,628 - INFO - Processed 145100000 reads so far
2011-05-20 02:33:10,855 - INFO - Processed 145200000 reads so far
2011-05-20 02:33:23,158 - INFO - Processed 145300000 reads so far
2011-05-20 02:33:34,103 - INFO - Processed 145400000 reads so far
2011-05-20 02:33:45,399 - INFO - Processed 145500000 reads so far
2011-05-20 02:33:56,525 - INFO - Processed 145600000 reads so far
2011-05-20 02:34:07,682 - INFO - Processed 145700000 reads so far
2011-05-20 02:34:20,827 - INFO - Processed 145800000 reads so far
2011-05-20 02:34:32,550 - INFO - Processed 145900000 reads so far
2011-05-20 02:34:43,999 - INFO - Processed 146000000 reads so far
2011-05-20 02:34:45,668 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:146351971-166371971
2011-05-20 02:34:56,039 - INFO - Processed 146100000 reads so far
2011-05-20 02:35:07,490 - INFO - Processed 146200000 reads so far
2011-05-20 02:35:18,580 - INFO - Processed 146300000 reads so far
2011-05-20 02:35:29,672 - INFO - Processed 146400000 reads so far
2011-05-20 02:35:34,527 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7_random:0-20010050
2011-05-20 02:35:35,885 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:2990048-23010048
2011-05-20 02:35:40,911 - INFO - Processed 146500000 reads so far
2011-05-20 02:35:52,090 - INFO - Processed 146600000 reads so far
2011-05-20 02:36:03,083 - INFO - Processed 146700000 reads so far
2011-05-20 02:36:14,387 - INFO - Processed 146800000 reads so far
2011-05-20 02:36:25,423 - INFO - Processed 146900000 reads so far
2011-05-20 02:36:37,224 - INFO - Processed 147000000 reads so far
2011-05-20 02:36:51,216 - INFO - Processed 147100000 reads so far
2011-05-20 02:37:02,637 - INFO - Processed 147200000 reads so far
2011-05-20 02:37:13,512 - INFO - Processed 147300000 reads so far
2011-05-20 02:37:24,558 - INFO - Processed 147400000 reads so far
2011-05-20 02:37:34,979 - INFO - Processed 147500000 reads so far
2011-05-20 02:37:41,209 - INFO - Processed 147600000 reads so far
2011-05-20 02:37:50,670 - INFO - Processed 147700000 reads so far
2011-05-20 02:38:01,591 - INFO - Processed 147800000 reads so far
2011-05-20 02:38:06,799 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:22990079-43010079
2011-05-20 02:38:13,914 - INFO - Processed 147900000 reads so far
2011-05-20 02:38:25,101 - INFO - Processed 148000000 reads so far
2011-05-20 02:38:36,747 - INFO - Processed 148100000 reads so far
2011-05-20 02:38:48,296 - INFO - Processed 148200000 reads so far
2011-05-20 02:38:59,663 - INFO - Processed 148300000 reads so far
2011-05-20 02:39:11,499 - INFO - Processed 148400000 reads so far
2011-05-20 02:39:22,890 - INFO - Processed 148500000 reads so far
2011-05-20 02:39:34,348 - INFO - Processed 148600000 reads so far
2011-05-20 02:39:45,782 - INFO - Processed 148700000 reads so far
2011-05-20 02:39:57,426 - INFO - Processed 148800000 reads so far
2011-05-20 02:40:09,249 - INFO - Processed 148900000 reads so far
2011-05-20 02:40:17,531 - INFO - Processed 149000000 reads so far
2011-05-20 02:40:21,264 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:42990108-63010108
2011-05-20 02:40:27,486 - INFO - Processed 149100000 reads so far
2011-05-20 02:40:39,312 - INFO - Processed 149200000 reads so far
2011-05-20 02:40:50,185 - INFO - Processed 149300000 reads so far
2011-05-20 02:41:01,455 - INFO - Processed 149400000 reads so far
2011-05-20 02:41:12,768 - INFO - Processed 149500000 reads so far
2011-05-20 02:41:23,646 - INFO - Processed 149600000 reads so far
2011-05-20 02:41:34,929 - INFO - Processed 149700000 reads so far
2011-05-20 02:41:47,131 - INFO - Processed 149800000 reads so far
2011-05-20 02:41:58,283 - INFO - Processed 149900000 reads so far
2011-05-20 02:42:09,575 - INFO - Processed 150000000 reads so far
2011-05-20 02:42:21,971 - INFO - Processed 150100000 reads so far
2011-05-20 02:42:22,119 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:62990155-83010155
2011-05-20 02:42:31,626 - INFO - Processed 150200000 reads so far
2011-05-20 02:42:40,672 - INFO - Processed 150300000 reads so far
2011-05-20 02:42:50,188 - INFO - Processed 150400000 reads so far
2011-05-20 02:43:00,953 - INFO - Processed 150500000 reads so far
2011-05-20 02:43:09,102 - INFO - Processed 150600000 reads so far
2011-05-20 02:43:18,574 - INFO - Processed 150700000 reads so far
2011-05-20 02:43:26,942 - INFO - Processed 150800000 reads so far
2011-05-20 02:43:36,745 - INFO - Processed 150900000 reads so far
2011-05-20 02:43:46,245 - INFO - Processed 151000000 reads so far
2011-05-20 02:43:55,049 - INFO - Processed 151100000 reads so far
2011-05-20 02:44:02,398 - INFO - Processed 151200000 reads so far
2011-05-20 02:44:12,602 - INFO - Processed 151300000 reads so far
2011-05-20 02:44:16,147 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:82990174-103010174
2011-05-20 02:44:24,057 - INFO - Processed 151400000 reads so far
2011-05-20 02:44:35,532 - INFO - Processed 151500000 reads so far
2011-05-20 02:44:46,986 - INFO - Processed 151600000 reads so far
2011-05-20 02:44:58,185 - INFO - Processed 151700000 reads so far
2011-05-20 02:45:11,425 - INFO - Processed 151800000 reads so far
2011-05-20 02:45:22,752 - INFO - Processed 151900000 reads so far
2011-05-20 02:45:34,040 - INFO - Processed 152000000 reads so far
2011-05-20 02:45:45,701 - INFO - Processed 152100000 reads so far
2011-05-20 02:45:57,978 - INFO - Processed 152200000 reads so far
2011-05-20 02:46:09,681 - INFO - Processed 152300000 reads so far
2011-05-20 02:46:21,641 - INFO - Processed 152400000 reads so far
2011-05-20 02:46:31,467 - INFO - Processed 152500000 reads so far
2011-05-20 02:46:38,680 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:102990177-123010177
2011-05-20 02:46:40,683 - INFO - Processed 152600000 reads so far
2011-05-20 02:46:53,797 - INFO - Processed 152700000 reads so far
2011-05-20 02:47:03,173 - INFO - Processed 152800000 reads so far
2011-05-20 02:47:12,827 - INFO - Processed 152900000 reads so far
2011-05-20 02:48:01,212 - INFO - Processed 153000000 reads so far
2011-05-20 02:48:12,483 - INFO - Processed 153100000 reads so far
2011-05-20 02:48:23,629 - INFO - Processed 153200000 reads so far
2011-05-20 02:48:33,094 - INFO - Processed 153300000 reads so far
2011-05-20 02:48:42,581 - INFO - Processed 153400000 reads so far
2011-05-20 02:48:53,737 - INFO - Processed 153500000 reads so far
2011-05-20 02:49:04,965 - INFO - Processed 153600000 reads so far
2011-05-20 02:49:16,588 - INFO - Processed 153700000 reads so far
2011-05-20 02:49:27,881 - INFO - Processed 153800000 reads so far
2011-05-20 02:49:32,463 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:122990186-143010186
2011-05-20 02:49:39,241 - INFO - Processed 153900000 reads so far
2011-05-20 02:49:50,928 - INFO - Processed 154000000 reads so far
2011-05-20 02:50:02,286 - INFO - Processed 154100000 reads so far
2011-05-20 02:50:14,385 - INFO - Processed 154200000 reads so far
2011-05-20 02:50:26,462 - INFO - Processed 154300000 reads so far
2011-05-20 02:50:37,915 - INFO - Processed 154400000 reads so far
2011-05-20 02:50:41,340 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8_random:0-20010017
2011-05-20 02:50:45,143 - INFO - Processed 154500000 reads so far
2011-05-20 02:50:54,579 - INFO - Processed 154600000 reads so far
2011-05-20 02:50:58,287 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:2989966-23009966
2011-05-20 02:51:05,062 - INFO - Processed 154700000 reads so far
2011-05-20 02:51:14,873 - INFO - Processed 154800000 reads so far
2011-05-20 02:51:23,935 - INFO - Processed 154900000 reads so far
2011-05-20 02:51:33,311 - INFO - Processed 155000000 reads so far
2011-05-20 02:51:42,651 - INFO - Processed 155100000 reads so far
2011-05-20 02:51:51,975 - INFO - Processed 155200000 reads so far
2011-05-20 02:52:01,192 - INFO - Processed 155300000 reads so far
2011-05-20 02:52:10,380 - INFO - Processed 155400000 reads so far
2011-05-20 02:52:19,941 - INFO - Processed 155500000 reads so far
2011-05-20 02:52:29,525 - INFO - Processed 155600000 reads so far
2011-05-20 02:52:38,919 - INFO - Processed 155700000 reads so far
2011-05-20 02:52:48,574 - INFO - Processed 155800000 reads so far
2011-05-20 02:52:58,125 - INFO - Processed 155900000 reads so far
2011-05-20 02:53:07,467 - INFO - Processed 156000000 reads so far
2011-05-20 02:53:16,986 - INFO - Processed 156100000 reads so far
2011-05-20 02:53:26,512 - INFO - Processed 156200000 reads so far
2011-05-20 02:53:35,802 - INFO - Processed 156300000 reads so far
2011-05-20 02:53:44,102 - INFO - Processed 156400000 reads so far
2011-05-20 02:53:52,160 - INFO - Processed 156500000 reads so far
2011-05-20 02:54:01,565 - INFO - Processed 156600000 reads so far
2011-05-20 02:54:10,483 - INFO - Processed 156700000 reads so far
2011-05-20 02:54:18,961 - INFO - Processed 156800000 reads so far
2011-05-20 02:54:27,559 - INFO - Processed 156900000 reads so far
2011-05-20 02:54:34,467 - INFO - Processed 157000000 reads so far
2011-05-20 02:54:43,524 - INFO - Processed 157100000 reads so far
2011-05-20 02:54:52,670 - INFO - Processed 157200000 reads so far
2011-05-20 02:55:00,676 - INFO - Processed 157300000 reads so far
2011-05-20 02:55:10,168 - INFO - Processed 157400000 reads so far
2011-05-20 02:55:19,598 - INFO - Processed 157500000 reads so far
2011-05-20 02:55:49,051 - INFO - Processed 157600000 reads so far
2011-05-20 02:55:56,795 - INFO - Processed 157700000 reads so far
2011-05-20 02:56:06,876 - INFO - Processed 157800000 reads so far
2011-05-20 02:56:16,377 - INFO - Processed 157900000 reads so far
2011-05-20 02:56:24,812 - INFO - Processed 158000000 reads so far
2011-05-20 02:56:32,120 - INFO - Processed 158100000 reads so far
2011-05-20 02:56:39,271 - INFO - Processed 158200000 reads so far
2011-05-20 02:56:47,823 - INFO - Processed 158300000 reads so far
2011-05-20 02:56:56,963 - INFO - Processed 158400000 reads so far
2011-05-20 02:57:06,410 - INFO - Processed 158500000 reads so far
2011-05-20 02:57:16,053 - INFO - Processed 158600000 reads so far
2011-05-20 02:57:25,679 - INFO - Processed 158700000 reads so far
2011-05-20 02:57:35,272 - INFO - Processed 158800000 reads so far
2011-05-20 02:57:46,888 - INFO - Processed 158900000 reads so far
2011-05-20 02:57:54,568 - INFO - Processed 159000000 reads so far
2011-05-20 02:58:02,292 - INFO - Processed 159100000 reads so far
2011-05-20 02:58:10,188 - INFO - Processed 159200000 reads so far
2011-05-20 02:58:16,990 - INFO - Processed 159300000 reads so far
2011-05-20 02:58:24,999 - INFO - Processed 159400000 reads so far
2011-05-20 02:58:31,992 - INFO - Processed 159500000 reads so far
2011-05-20 02:58:40,702 - INFO - Processed 159600000 reads so far
2011-05-20 02:58:47,691 - INFO - Processed 159700000 reads so far
2011-05-20 02:58:56,988 - INFO - Processed 159800000 reads so far
2011-05-20 02:59:03,593 - INFO - Processed 159900000 reads so far
2011-05-20 02:59:10,724 - INFO - Processed 160000000 reads so far
2011-05-20 02:59:17,418 - INFO - Processed 160100000 reads so far
2011-05-20 02:59:24,901 - INFO - Processed 160200000 reads so far
2011-05-20 02:59:33,053 - INFO - Processed 160300000 reads so far
2011-05-20 02:59:39,903 - INFO - Processed 160400000 reads so far
2011-05-20 02:59:47,187 - INFO - Processed 160500000 reads so far
2011-05-20 02:59:54,726 - INFO - Processed 160600000 reads so far
2011-05-20 03:00:01,597 - INFO - Processed 160700000 reads so far
2011-05-20 03:00:09,048 - INFO - Processed 160800000 reads so far
2011-05-20 03:00:17,084 - INFO - Processed 160900000 reads so far
2011-05-20 03:00:25,448 - INFO - Processed 161000000 reads so far
2011-05-20 03:00:32,980 - INFO - Processed 161100000 reads so far
2011-05-20 03:00:40,524 - INFO - Processed 161200000 reads so far
2011-05-20 03:00:49,795 - INFO - Processed 161300000 reads so far
2011-05-20 03:00:59,266 - INFO - Processed 161400000 reads so far
2011-05-20 03:01:08,917 - INFO - Processed 161500000 reads so far
2011-05-20 03:01:18,510 - INFO - Processed 161600000 reads so far
2011-05-20 03:01:25,844 - INFO - Processed 161700000 reads so far
2011-05-20 03:01:36,478 - INFO - Processed 161800000 reads so far
2011-05-20 03:01:45,704 - INFO - Processed 161900000 reads so far
2011-05-20 03:01:52,797 - INFO - Processed 162000000 reads so far
2011-05-20 03:02:01,798 - INFO - Processed 162100000 reads so far
2011-05-20 03:02:09,344 - INFO - Processed 162200000 reads so far
2011-05-20 03:02:17,997 - INFO - Processed 162300000 reads so far
2011-05-20 03:02:26,022 - INFO - Processed 162400000 reads so far
2011-05-20 03:02:34,790 - INFO - Processed 162500000 reads so far
2011-05-20 03:02:43,545 - INFO - Processed 162600000 reads so far
2011-05-20 03:02:50,836 - INFO - Processed 162700000 reads so far
2011-05-20 03:02:59,427 - INFO - Processed 162800000 reads so far
2011-05-20 03:03:08,576 - INFO - Processed 162900000 reads so far
2011-05-20 03:03:16,875 - INFO - Processed 163000000 reads so far
2011-05-20 03:03:25,064 - INFO - Processed 163100000 reads so far
2011-05-20 03:03:33,490 - INFO - Processed 163200000 reads so far
2011-05-20 03:03:40,749 - INFO - Processed 163300000 reads so far
2011-05-20 03:03:50,369 - INFO - Processed 163400000 reads so far
2011-05-20 03:03:58,897 - INFO - Processed 163500000 reads so far
2011-05-20 03:04:09,115 - INFO - Processed 163600000 reads so far
2011-05-20 03:04:17,595 - INFO - Processed 163700000 reads so far
2011-05-20 03:04:28,770 - INFO - Processed 163800000 reads so far
2011-05-20 03:04:37,275 - INFO - Processed 163900000 reads so far
2011-05-20 03:04:46,703 - INFO - Processed 164000000 reads so far
2011-05-20 03:04:55,138 - INFO - Processed 164100000 reads so far
2011-05-20 03:05:04,432 - INFO - Processed 164200000 reads so far
2011-05-20 03:05:12,791 - INFO - Processed 164300000 reads so far
2011-05-20 03:05:22,163 - INFO - Processed 164400000 reads so far
2011-05-20 03:05:30,317 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:22989979-43009979
2011-05-20 03:05:31,475 - INFO - Processed 164500000 reads so far
2011-05-20 03:05:42,140 - INFO - Processed 164600000 reads so far
2011-05-20 03:05:52,520 - INFO - Processed 164700000 reads so far
2011-05-20 03:06:02,723 - INFO - Processed 164800000 reads so far
2011-05-20 03:06:11,534 - INFO - Processed 164900000 reads so far
2011-05-20 03:06:23,054 - INFO - Processed 165000000 reads so far
2011-05-20 03:06:35,303 - INFO - Processed 165100000 reads so far
2011-05-20 03:06:46,494 - INFO - Processed 165200000 reads so far
2011-05-20 03:06:56,397 - INFO - Processed 165300000 reads so far
2011-05-20 03:07:04,057 - INFO - Processed 165400000 reads so far
2011-05-20 03:07:14,607 - INFO - Processed 165500000 reads so far
2011-05-20 03:07:26,275 - INFO - Processed 165600000 reads so far
2011-05-20 03:07:37,929 - INFO - Processed 165700000 reads so far
2011-05-20 03:07:49,720 - INFO - Processed 165800000 reads so far
2011-05-20 03:08:01,127 - INFO - Processed 165900000 reads so far
2011-05-20 03:08:03,904 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:42989987-63009987
2011-05-20 03:08:12,510 - INFO - Processed 166000000 reads so far
2011-05-20 03:08:23,963 - INFO - Processed 166100000 reads so far
2011-05-20 03:08:35,413 - INFO - Processed 166200000 reads so far
2011-05-20 03:08:48,184 - INFO - Processed 166300000 reads so far
2011-05-20 03:08:59,413 - INFO - Processed 166400000 reads so far
2011-05-20 03:09:11,054 - INFO - Processed 166500000 reads so far
2011-05-20 03:09:22,772 - INFO - Processed 166600000 reads so far
2011-05-20 03:09:34,081 - INFO - Processed 166700000 reads so far
2011-05-20 03:09:45,305 - INFO - Processed 166800000 reads so far
2011-05-20 03:09:56,160 - INFO - Processed 166900000 reads so far
2011-05-20 03:10:08,229 - INFO - Processed 167000000 reads so far
2011-05-20 03:10:18,375 - INFO - Processed 167100000 reads so far
2011-05-20 03:10:27,105 - INFO - Processed 167200000 reads so far
2011-05-20 03:10:29,803 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:62989995-83009995
2011-05-20 03:10:37,592 - INFO - Processed 167300000 reads so far
2011-05-20 03:10:46,541 - INFO - Processed 167400000 reads so far
2011-05-20 03:10:55,083 - INFO - Processed 167500000 reads so far
2011-05-20 03:11:05,758 - INFO - Processed 167600000 reads so far
2011-05-20 03:11:13,985 - INFO - Processed 167700000 reads so far
2011-05-20 03:11:24,054 - INFO - Processed 167800000 reads so far
2011-05-20 03:11:32,704 - INFO - Processed 167900000 reads so far
2011-05-20 03:11:41,391 - INFO - Processed 168000000 reads so far
2011-05-20 03:11:52,066 - INFO - Processed 168100000 reads so far
2011-05-20 03:12:01,043 - INFO - Processed 168200000 reads so far
2011-05-20 03:12:11,464 - INFO - Processed 168300000 reads so far
2011-05-20 03:12:21,729 - INFO - Processed 168400000 reads so far
2011-05-20 03:12:26,127 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:82990006-103010006
2011-05-20 03:12:30,181 - INFO - Processed 168500000 reads so far
2011-05-20 03:12:40,458 - INFO - Processed 168600000 reads so far
2011-05-20 03:12:50,687 - INFO - Processed 168700000 reads so far
2011-05-20 03:12:59,061 - INFO - Processed 168800000 reads so far
2011-05-20 03:13:07,771 - INFO - Processed 168900000 reads so far
2011-05-20 03:13:15,759 - INFO - Processed 169000000 reads so far
2011-05-20 03:13:25,202 - INFO - Processed 169100000 reads so far
2011-05-20 03:13:33,703 - INFO - Processed 169200000 reads so far
2011-05-20 03:13:43,237 - INFO - Processed 169300000 reads so far
2011-05-20 03:13:52,447 - INFO - Processed 169400000 reads so far
2011-05-20 03:14:03,859 - INFO - Processed 169500000 reads so far
2011-05-20 03:14:12,564 - INFO - Processed 169600000 reads so far
2011-05-20 03:14:18,614 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:102990079-123010079
2011-05-20 03:14:21,390 - INFO - Processed 169700000 reads so far
2011-05-20 03:14:31,024 - INFO - Processed 169800000 reads so far
2011-05-20 03:14:41,598 - INFO - Processed 169900000 reads so far
2011-05-20 03:14:51,121 - INFO - Processed 170000000 reads so far
2011-05-20 03:15:00,947 - INFO - Processed 170100000 reads so far
2011-05-20 03:15:10,936 - INFO - Processed 170200000 reads so far
2011-05-20 03:15:21,056 - INFO - Processed 170300000 reads so far
2011-05-20 03:15:30,484 - INFO - Processed 170400000 reads so far
2011-05-20 03:15:40,884 - INFO - Processed 170500000 reads so far
2011-05-20 03:15:48,626 - INFO - Processed 170600000 reads so far
2011-05-20 03:15:59,468 - INFO - Processed 170700000 reads so far
2011-05-20 03:16:09,214 - INFO - Processed 170800000 reads so far
2011-05-20 03:16:18,275 - INFO - Processed 170900000 reads so far
2011-05-20 03:16:24,743 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:122990125-143010125
2011-05-20 03:16:26,546 - INFO - Processed 171000000 reads so far
2011-05-20 03:16:29,926 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9_random:0-20010017
2011-05-20 03:16:33,606 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrM:0-20010000
2011-05-20 03:16:35,017 - INFO - Processed 171100000 reads so far
2011-05-20 03:16:39,026 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrUn_random:0-20010000
2011-05-20 03:16:42,657 - INFO - Processed 171200000 reads so far
2011-05-20 03:16:53,543 - INFO - Processed 171300000 reads so far
2011-05-20 03:17:01,353 - INFO - Processed 171400000 reads so far
2011-05-20 03:17:09,060 - INFO - Processed 171500000 reads so far
2011-05-20 03:17:17,118 - INFO - Processed 171600000 reads so far
2011-05-20 03:17:21,021 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:2990005-23010005
2011-05-20 03:17:26,485 - INFO - Processed 171700000 reads so far
2011-05-20 03:17:34,486 - INFO - Processed 171800000 reads so far
2011-05-20 03:17:42,920 - INFO - Processed 171900000 reads so far
2011-05-20 03:17:55,472 - INFO - Processed 172000000 reads so far
2011-05-20 03:18:07,110 - INFO - Processed 172100000 reads so far
2011-05-20 03:18:16,984 - INFO - Processed 172200000 reads so far
2011-05-20 03:18:29,432 - INFO - Processed 172300000 reads so far
2011-05-20 03:18:41,759 - INFO - Processed 172400000 reads so far
2011-05-20 03:18:43,285 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:22990044-43010044
2011-05-20 03:18:54,723 - INFO - Processed 172500000 reads so far
2011-05-20 03:19:08,190 - INFO - Processed 172600000 reads so far
2011-05-20 03:19:18,564 - INFO - Processed 172700000 reads so far
2011-05-20 03:19:29,322 - INFO - Processed 172800000 reads so far
2011-05-20 03:19:41,598 - INFO - Processed 172900000 reads so far
2011-05-20 03:19:54,256 - INFO - Processed 173000000 reads so far
2011-05-20 03:20:06,653 - INFO - Processed 173100000 reads so far
2011-05-20 03:20:13,214 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:42990051-63010051
2011-05-20 03:20:19,139 - INFO - Processed 173200000 reads so far
2011-05-20 03:20:32,710 - INFO - Processed 173300000 reads so far
2011-05-20 03:20:45,183 - INFO - Processed 173400000 reads so far
2011-05-20 03:20:57,499 - INFO - Processed 173500000 reads so far
2011-05-20 03:21:10,901 - INFO - Processed 173600000 reads so far
2011-05-20 03:21:23,164 - INFO - Processed 173700000 reads so far
2011-05-20 03:21:32,325 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:62990057-83010057
2011-05-20 03:21:36,009 - INFO - Processed 173800000 reads so far
2011-05-20 03:21:47,331 - INFO - Processed 173900000 reads so far
2011-05-20 03:21:56,429 - INFO - Processed 174000000 reads so far
2011-05-20 03:22:05,936 - INFO - Processed 174100000 reads so far
2011-05-20 03:22:15,166 - INFO - Processed 174200000 reads so far
2011-05-20 03:22:23,289 - INFO - Processed 174300000 reads so far
2011-05-20 03:22:31,430 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:82990062-103010062
2011-05-20 03:22:32,150 - INFO - Processed 174400000 reads so far
2011-05-20 03:22:43,275 - INFO - Processed 174500000 reads so far
2011-05-20 03:22:52,644 - INFO - Processed 174600000 reads so far
2011-05-20 03:23:00,967 - INFO - Processed 174700000 reads so far
2011-05-20 03:23:09,428 - INFO - Processed 174800000 reads so far
2011-05-20 03:23:17,637 - INFO - Processed 174900000 reads so far
2011-05-20 03:23:27,057 - INFO - Processed 175000000 reads so far
2011-05-20 03:23:27,894 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:102990063-123010063
2011-05-20 03:23:35,304 - INFO - Processed 175100000 reads so far
2011-05-20 03:23:43,000 - INFO - Processed 175200000 reads so far
2011-05-20 03:23:50,801 - INFO - Processed 175300000 reads so far
2011-05-20 03:24:00,604 - INFO - Processed 175400000 reads so far
2011-05-20 03:24:10,737 - INFO - Processed 175500000 reads so far
2011-05-20 03:24:19,090 - INFO - Processed 175600000 reads so far
2011-05-20 03:24:27,478 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:122990067-143010067
2011-05-20 03:24:27,757 - INFO - Processed 175700000 reads so far
2011-05-20 03:24:37,092 - INFO - Processed 175800000 reads so far
2011-05-20 03:24:45,204 - INFO - Processed 175900000 reads so far
2011-05-20 03:24:53,880 - INFO - Processed 176000000 reads so far
2011-05-20 03:25:03,673 - INFO - Processed 176100000 reads so far
2011-05-20 03:25:13,673 - INFO - Processed 176200000 reads so far
2011-05-20 03:25:20,982 - INFO - Processed 176300000 reads so far
2011-05-20 03:25:28,889 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:142990079-163010079
2011-05-20 03:25:31,728 - INFO - Processed 176400000 reads so far
2011-05-20 03:25:40,533 - INFO - Processed 176500000 reads so far
2011-05-20 03:25:48,372 - INFO - Processed 176600000 reads so far
2011-05-20 03:25:57,889 - INFO - Processed 176700000 reads so far
2011-05-20 03:26:06,318 - INFO - Processed 176800000 reads so far
2011-05-20 03:26:14,141 - INFO - Processed 176900000 reads so far
2011-05-20 03:26:20,529 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:162990106-183010106
2011-05-20 03:26:24,723 - INFO - Processed 177000000 reads so far
2011-05-20 03:26:31,924 - INFO - Processed 177100000 reads so far
2011-05-20 03:26:37,475 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX_random:0-20010061
2011-05-20 03:26:38,588 - INFO - Processed 177200000 reads so far
2011-05-20 03:26:41,522 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY:0-20010019
2011-05-20 03:26:47,078 - INFO - Processed 177300000 reads so far
2011-05-20 03:26:48,916 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:0-20010349
2011-05-20 03:26:54,837 - INFO - Processed 177400000 reads so far
2011-05-20 03:27:04,432 - INFO - Processed 177500000 reads so far
2011-05-20 03:27:14,356 - INFO - Processed 177600000 reads so far
2011-05-20 03:27:22,856 - INFO - Processed 177700000 reads so far
2011-05-20 03:27:32,232 - INFO - Processed 177800000 reads so far
2011-05-20 03:27:39,775 - INFO - Processed 177900000 reads so far
2011-05-20 03:27:47,459 - INFO - Processed 178000000 reads so far
2011-05-20 03:27:55,195 - INFO - Processed 178100000 reads so far
2011-05-20 03:28:03,176 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:19990560-40010560
2011-05-20 03:28:05,130 - INFO - Processed 178200000 reads so far
2011-05-20 03:28:13,351 - INFO - Processed 178300000 reads so far
2011-05-20 03:28:24,192 - INFO - Processed 178400000 reads so far
2011-05-20 03:28:34,175 - INFO - Processed 178500000 reads so far
2011-05-20 03:28:44,310 - INFO - Processed 178600000 reads so far
2011-05-20 03:28:51,331 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:39990600-60010600
2011-05-20 03:28:53,902 - INFO - Processed 178700000 reads so far
2011-05-20 03:29:01,477 - INFO - Processed 178800000 reads so far
2011-05-20 03:29:11,653 - INFO - Processed 178900000 reads so far
2011-05-20 03:29:22,953 - INFO - Processed 179000000 reads so far
2011-05-20 03:29:32,718 - INFO - Processed 179100000 reads so far
2011-05-20 03:29:42,791 - INFO - Processed 179200000 reads so far
2011-05-20 03:29:52,344 - INFO - Processed 179300000 reads so far
2011-05-20 03:30:00,325 - INFO - Processed 179400000 reads so far
2011-05-20 03:30:03,144 - INFO - Processed 179500000 reads so far
2011-05-20 03:30:07,053 - INFO - Processed 179600000 reads so far
2011-05-20 03:30:11,421 - INFO - Processed 179700000 reads so far
2011-05-20 03:30:14,451 - INFO - Processed 179800000 reads so far
2011-05-20 03:30:18,922 - INFO - Processed 179900000 reads so far
2011-05-20 03:30:22,285 - INFO - Processed 180000000 reads so far
2011-05-20 03:30:27,391 - INFO - Processed 180100000 reads so far
2011-05-20 03:30:30,626 - INFO - Processed 180200000 reads so far
2011-05-20 03:30:33,344 - INFO - Processed 180300000 reads so far
2011-05-20 03:30:36,464 - INFO - Processed 180400000 reads so far
2011-05-20 03:30:39,476 - INFO - Processed 180500000 reads so far
2011-05-20 03:30:42,752 - INFO - Processed 180600000 reads so far
2011-05-20 03:30:46,919 - INFO - Processed 180700000 reads so far
2011-05-20 03:30:49,690 - INFO - Processed 180800000 reads so far
2011-05-20 03:30:52,893 - INFO - Processed 180900000 reads so far
2011-05-20 03:30:55,649 - INFO - Processed 181000000 reads so far
2011-05-20 03:31:00,133 - INFO - Processed 181100000 reads so far
2011-05-20 03:31:03,223 - INFO - Processed 181200000 reads so far
2011-05-20 03:31:07,970 - INFO - Processed 181300000 reads so far
2011-05-20 03:31:11,907 - INFO - Processed 181400000 reads so far
2011-05-20 03:31:14,546 - INFO - Processed 181500000 reads so far
2011-05-20 03:31:18,207 - INFO - Processed 181600000 reads so far
2011-05-20 03:31:20,098 - INFO - Finished loading data. Outputting QC metrics
2011-05-20 03:31:43,322 - INFO - Finished outputting QC metrics
2011-05-20 03:31:43,478 - INFO - Finished generating QC metrics