2011-05-20 03:31:43,904 - INFO - Generating QC metrics for BAM File ['WTCHG_13407.bam']
2011-05-20 03:31:43,904 - INFO - Output will go to WTCHG_13407.qc.txt.tmp
2011-05-20 03:31:43,905 - INFO - Reading GC Map from file /data/Genomes/gcMap/Mouse37.gcMap.gz
2011-05-20 03:34:49,352 - INFO - Finished reading GC Map
2011-05-20 03:34:49,353 - INFO - Reading CDS from exon definition file /data/Genomes/annotation/Mouse37.refGene.txt.gz
2011-05-20 03:34:52,439 - INFO - Read 382138 exons (33804740 nucleotides) for 32 chromosomes
2011-05-20 03:34:52,440 - INFO - Computing coverage cut-off
2011-05-20 03:34:52,440 - INFO - Retrieving BAM file coverage info from samtools pileup
2011-05-20 03:34:56,323 - INFO - Processed 1000000 pile-up sites
2011-05-20 03:35:00,393 - INFO - Processed 2000000 pile-up sites
2011-05-20 03:35:03,984 - INFO - Processed 3000000 pile-up sites
2011-05-20 03:35:07,484 - INFO - Processed 4000000 pile-up sites
2011-05-20 03:35:12,345 - INFO - Processed 5000000 pile-up sites
2011-05-20 03:35:16,671 - INFO - Processed 6000000 pile-up sites
2011-05-20 03:35:20,602 - INFO - Processed 7000000 pile-up sites
2011-05-20 03:35:24,397 - INFO - Processed 8000000 pile-up sites
2011-05-20 03:35:28,386 - INFO - Processed 9000000 pile-up sites
2011-05-20 03:35:31,916 - INFO - Processed 10000000 pile-up sites
2011-05-20 03:35:36,319 - INFO - Processed 11000000 pile-up sites
2011-05-20 03:35:40,058 - INFO - Processed 12000000 pile-up sites
2011-05-20 03:35:44,990 - INFO - Processed 13000000 pile-up sites
2011-05-20 03:35:48,768 - INFO - Processed 14000000 pile-up sites
2011-05-20 03:35:53,261 - INFO - Processed 15000000 pile-up sites
2011-05-20 03:35:57,142 - INFO - Processed 16000000 pile-up sites
2011-05-20 03:36:01,073 - INFO - Processed 17000000 pile-up sites
2011-05-20 03:36:05,273 - INFO - Processed 18000000 pile-up sites
2011-05-20 03:36:08,950 - INFO - Processed 19000000 pile-up sites
2011-05-20 03:36:12,828 - INFO - Processed 20000000 pile-up sites
2011-05-20 03:36:16,963 - INFO - Processed 21000000 pile-up sites
2011-05-20 03:36:20,836 - INFO - Processed 22000000 pile-up sites
2011-05-20 03:36:24,808 - INFO - Processed 23000000 pile-up sites
2011-05-20 03:36:28,864 - INFO - Processed 24000000 pile-up sites
2011-05-20 03:36:33,003 - INFO - Processed 25000000 pile-up sites
2011-05-20 03:36:36,724 - INFO - Processed 26000000 pile-up sites
2011-05-20 03:36:40,423 - INFO - Processed 27000000 pile-up sites
2011-05-20 03:36:44,219 - INFO - Processed 28000000 pile-up sites
2011-05-20 03:36:45,788 - INFO - Finished processing pile-up on 28454417 sites (200000005 nucleotides)
2011-05-20 03:36:45,789 - INFO - Coverage cut-off value is 25
2011-05-20 03:36:45,789 - INFO - Loading data into QC data manager
2011-05-20 03:36:46,043 - INFO - Reading data from BAM file WTCHG_13407.bam. All reads in file will be read
2011-05-20 03:36:46,087 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:2990000-23010000
2011-05-20 03:36:56,806 - INFO - Processed 100000 reads so far
2011-05-20 03:37:06,727 - INFO - Processed 200000 reads so far
2011-05-20 03:37:15,443 - INFO - Processed 300000 reads so far
2011-05-20 03:37:24,090 - INFO - Processed 400000 reads so far
2011-05-20 03:37:33,098 - INFO - Processed 500000 reads so far
2011-05-20 03:37:41,864 - INFO - Processed 600000 reads so far
2011-05-20 03:37:50,459 - INFO - Processed 700000 reads so far
2011-05-20 03:37:58,640 - INFO - Processed 800000 reads so far
2011-05-20 03:38:07,555 - INFO - Processed 900000 reads so far
2011-05-20 03:38:16,243 - INFO - Processed 1000000 reads so far
2011-05-20 03:38:26,616 - INFO - Processed 1100000 reads so far
2011-05-20 03:38:37,728 - INFO - Processed 1200000 reads so far
2011-05-20 03:38:48,246 - INFO - Processed 1300000 reads so far
2011-05-20 03:38:57,503 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:22990004-43010004
2011-05-20 03:38:59,484 - INFO - Processed 1400000 reads so far
2011-05-20 03:39:10,075 - INFO - Processed 1500000 reads so far
2011-05-20 03:39:19,632 - INFO - Processed 1600000 reads so far
2011-05-20 03:39:30,715 - INFO - Processed 1700000 reads so far
2011-05-20 03:39:41,772 - INFO - Processed 1800000 reads so far
2011-05-20 03:39:52,225 - INFO - Processed 1900000 reads so far
2011-05-20 03:40:03,114 - INFO - Processed 2000000 reads so far
2011-05-20 03:40:14,333 - INFO - Processed 2100000 reads so far
2011-05-20 03:40:25,486 - INFO - Processed 2200000 reads so far
2011-05-20 03:40:36,616 - INFO - Processed 2300000 reads so far
2011-05-20 03:40:49,545 - INFO - Processed 2400000 reads so far
2011-05-20 03:41:00,520 - INFO - Processed 2500000 reads so far
2011-05-20 03:41:11,606 - INFO - Processed 2600000 reads so far
2011-05-20 03:41:22,774 - INFO - Processed 2700000 reads so far
2011-05-20 03:41:27,694 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:42990015-63010015
2011-05-20 03:41:34,342 - INFO - Processed 2800000 reads so far
2011-05-20 03:41:43,756 - INFO - Processed 2900000 reads so far
2011-05-20 03:41:53,921 - INFO - Processed 3000000 reads so far
2011-05-20 03:42:06,506 - INFO - Processed 3100000 reads so far
2011-05-20 03:42:20,215 - INFO - Processed 3200000 reads so far
2011-05-20 03:42:30,630 - INFO - Processed 3300000 reads so far
2011-05-20 03:42:39,166 - INFO - Processed 3400000 reads so far
2011-05-20 03:42:49,591 - INFO - Processed 3500000 reads so far
2011-05-20 03:42:58,700 - INFO - Processed 3600000 reads so far
2011-05-20 03:43:10,632 - INFO - Processed 3700000 reads so far
2011-05-20 03:43:21,517 - INFO - Processed 3800000 reads so far
2011-05-20 03:43:31,730 - INFO - Processed 3900000 reads so far
2011-05-20 03:43:41,459 - INFO - Processed 4000000 reads so far
2011-05-20 03:43:49,102 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:62990027-83010027
2011-05-20 03:43:50,286 - INFO - Processed 4100000 reads so far
2011-05-20 03:44:01,356 - INFO - Processed 4200000 reads so far
2011-05-20 03:44:12,211 - INFO - Processed 4300000 reads so far
2011-05-20 03:44:23,480 - INFO - Processed 4400000 reads so far
2011-05-20 03:44:33,711 - INFO - Processed 4500000 reads so far
2011-05-20 03:44:45,073 - INFO - Processed 4600000 reads so far
2011-05-20 03:44:55,318 - INFO - Processed 4700000 reads so far
2011-05-20 03:45:05,563 - INFO - Processed 4800000 reads so far
2011-05-20 03:45:16,125 - INFO - Processed 4900000 reads so far
2011-05-20 03:45:24,928 - INFO - Processed 5000000 reads so far
2011-05-20 03:45:34,019 - INFO - Processed 5100000 reads so far
2011-05-20 03:45:44,811 - INFO - Processed 5200000 reads so far
2011-05-20 03:45:56,987 - INFO - Processed 5300000 reads so far
2011-05-20 03:46:06,856 - INFO - Processed 5400000 reads so far
2011-05-20 03:46:09,824 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:82990050-103010050
2011-05-20 03:46:17,139 - INFO - Processed 5500000 reads so far
2011-05-20 03:46:26,417 - INFO - Processed 5600000 reads so far
2011-05-20 03:46:38,769 - INFO - Processed 5700000 reads so far
2011-05-20 03:46:48,782 - INFO - Processed 5800000 reads so far
2011-05-20 03:46:57,488 - INFO - Processed 5900000 reads so far
2011-05-20 03:47:05,647 - INFO - Processed 6000000 reads so far
2011-05-20 03:47:13,623 - INFO - Processed 6100000 reads so far
2011-05-20 03:47:22,352 - INFO - Processed 6200000 reads so far
2011-05-20 03:47:32,904 - INFO - Processed 6300000 reads so far
2011-05-20 03:47:41,226 - INFO - Processed 6400000 reads so far
2011-05-20 03:47:49,831 - INFO - Processed 6500000 reads so far
2011-05-20 03:47:58,090 - INFO - Processed 6600000 reads so far
2011-05-20 03:48:06,029 - INFO - Processed 6700000 reads so far
2011-05-20 03:48:16,078 - INFO - Processed 6800000 reads so far
2011-05-20 03:48:16,286 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:102990117-123010117
2011-05-20 03:48:24,448 - INFO - Processed 6900000 reads so far
2011-05-20 03:48:33,797 - INFO - Processed 7000000 reads so far
2011-05-20 03:48:43,481 - INFO - Processed 7100000 reads so far
2011-05-20 03:48:52,417 - INFO - Processed 7200000 reads so far
2011-05-20 03:49:01,530 - INFO - Processed 7300000 reads so far
2011-05-20 03:49:11,536 - INFO - Processed 7400000 reads so far
2011-05-20 03:49:20,148 - INFO - Processed 7500000 reads so far
2011-05-20 03:49:28,737 - INFO - Processed 7600000 reads so far
2011-05-20 03:49:36,519 - INFO - Processed 7700000 reads so far
2011-05-20 03:49:45,848 - INFO - Processed 7800000 reads so far
2011-05-20 03:49:56,130 - INFO - Processed 7900000 reads so far
2011-05-20 03:50:04,468 - INFO - Processed 8000000 reads so far
2011-05-20 03:50:14,039 - INFO - Processed 8100000 reads so far
2011-05-20 03:50:17,904 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:122990119-143010119
2011-05-20 03:50:22,543 - INFO - Processed 8200000 reads so far
2011-05-20 03:50:33,407 - INFO - Processed 8300000 reads so far
2011-05-20 03:50:42,056 - INFO - Processed 8400000 reads so far
2011-05-20 03:50:50,844 - INFO - Processed 8500000 reads so far
2011-05-20 03:51:00,246 - INFO - Processed 8600000 reads so far
2011-05-20 03:51:01,325 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:2990003-23010003
2011-05-20 03:51:08,418 - INFO - Processed 8700000 reads so far
2011-05-20 03:51:16,432 - INFO - Processed 8800000 reads so far
2011-05-20 03:51:23,810 - INFO - Processed 8900000 reads so far
2011-05-20 03:51:32,745 - INFO - Processed 9000000 reads so far
2011-05-20 03:51:42,345 - INFO - Processed 9100000 reads so far
2011-05-20 03:51:51,108 - INFO - Processed 9200000 reads so far
2011-05-20 03:52:01,089 - INFO - Processed 9300000 reads so far
2011-05-20 03:52:10,863 - INFO - Processed 9400000 reads so far
2011-05-20 03:52:21,779 - INFO - Processed 9500000 reads so far
2011-05-20 03:52:32,417 - INFO - Processed 9600000 reads so far
2011-05-20 03:52:42,892 - INFO - Processed 9700000 reads so far
2011-05-20 03:52:52,754 - INFO - Processed 9800000 reads so far
2011-05-20 03:53:02,299 - INFO - Processed 9900000 reads so far
2011-05-20 03:53:13,061 - INFO - Processed 10000000 reads so far
2011-05-20 03:53:21,747 - INFO - Processed 10100000 reads so far
2011-05-20 03:53:32,176 - INFO - Processed 10200000 reads so far
2011-05-20 03:53:36,016 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:22990006-43010006
2011-05-20 03:53:45,478 - INFO - Processed 10300000 reads so far
2011-05-20 03:53:55,813 - INFO - Processed 10400000 reads so far
2011-05-20 03:54:06,202 - INFO - Processed 10500000 reads so far
2011-05-20 03:54:16,656 - INFO - Processed 10600000 reads so far
2011-05-20 03:54:26,378 - INFO - Processed 10700000 reads so far
2011-05-20 03:54:35,697 - INFO - Processed 10800000 reads so far
2011-05-20 03:54:44,791 - INFO - Processed 10900000 reads so far
2011-05-20 03:54:54,453 - INFO - Processed 11000000 reads so far
2011-05-20 03:55:05,115 - INFO - Processed 11100000 reads so far
2011-05-20 03:55:15,901 - INFO - Processed 11200000 reads so far
2011-05-20 03:55:24,468 - INFO - Processed 11300000 reads so far
2011-05-20 03:55:34,625 - INFO - Processed 11400000 reads so far
2011-05-20 03:55:44,147 - INFO - Processed 11500000 reads so far
2011-05-20 03:55:50,490 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:42990025-63010025
2011-05-20 03:55:51,767 - INFO - Processed 11600000 reads so far
2011-05-20 03:56:02,307 - INFO - Processed 11700000 reads so far
2011-05-20 03:56:12,437 - INFO - Processed 11800000 reads so far
2011-05-20 03:56:21,606 - INFO - Processed 11900000 reads so far
2011-05-20 03:56:30,462 - INFO - Processed 12000000 reads so far
2011-05-20 03:56:41,059 - INFO - Processed 12100000 reads so far
2011-05-20 03:56:49,632 - INFO - Processed 12200000 reads so far
2011-05-20 03:57:00,463 - INFO - Processed 12300000 reads so far
2011-05-20 03:57:09,746 - INFO - Processed 12400000 reads so far
2011-05-20 03:57:19,348 - INFO - Processed 12500000 reads so far
2011-05-20 03:57:27,702 - INFO - Processed 12600000 reads so far
2011-05-20 03:57:37,348 - INFO - Processed 12700000 reads so far
2011-05-20 03:57:47,093 - INFO - Processed 12800000 reads so far
2011-05-20 03:57:58,284 - INFO - Processed 12900000 reads so far
2011-05-20 03:58:06,913 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:62990053-83010053
2011-05-20 03:58:11,061 - INFO - Processed 13000000 reads so far
2011-05-20 03:58:22,410 - INFO - Processed 13100000 reads so far
2011-05-20 03:58:50,809 - INFO - Processed 13200000 reads so far
2011-05-20 03:58:59,461 - INFO - Processed 13300000 reads so far
2011-05-20 03:59:08,369 - INFO - Processed 13400000 reads so far
2011-05-20 03:59:17,141 - INFO - Processed 13500000 reads so far
2011-05-20 03:59:25,751 - INFO - Processed 13600000 reads so far
2011-05-20 03:59:35,314 - INFO - Processed 13700000 reads so far
2011-05-20 03:59:44,096 - INFO - Processed 13800000 reads so far
2011-05-20 03:59:53,666 - INFO - Processed 13900000 reads so far
2011-05-20 04:00:05,318 - INFO - Processed 14000000 reads so far
2011-05-20 04:00:15,684 - INFO - Processed 14100000 reads so far
2011-05-20 04:00:25,825 - INFO - Processed 14200000 reads so far
2011-05-20 04:00:38,204 - INFO - Processed 14300000 reads so far
2011-05-20 04:00:40,532 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:82990058-103010058
2011-05-20 04:00:46,747 - INFO - Processed 14400000 reads so far
2011-05-20 04:00:59,303 - INFO - Processed 14500000 reads so far
2011-05-20 04:01:09,105 - INFO - Processed 14600000 reads so far
2011-05-20 04:01:18,459 - INFO - Processed 14700000 reads so far
2011-05-20 04:01:32,096 - INFO - Processed 14800000 reads so far
2011-05-20 04:01:42,500 - INFO - Processed 14900000 reads so far
2011-05-20 04:01:52,248 - INFO - Processed 15000000 reads so far
2011-05-20 04:02:01,203 - INFO - Processed 15100000 reads so far
2011-05-20 04:02:11,036 - INFO - Processed 15200000 reads so far
2011-05-20 04:02:20,012 - INFO - Processed 15300000 reads so far
2011-05-20 04:02:31,104 - INFO - Processed 15400000 reads so far
2011-05-20 04:02:39,880 - INFO - Processed 15500000 reads so far
2011-05-20 04:02:51,888 - INFO - Processed 15600000 reads so far
2011-05-20 04:02:56,411 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:102990072-123010072
2011-05-20 04:03:05,228 - INFO - Processed 15700000 reads so far
2011-05-20 04:03:16,499 - INFO - Processed 15800000 reads so far
2011-05-20 04:03:27,302 - INFO - Processed 15900000 reads so far
2011-05-20 04:03:36,570 - INFO - Processed 16000000 reads so far
2011-05-20 04:03:45,513 - INFO - Processed 16100000 reads so far
2011-05-20 04:03:55,359 - INFO - Processed 16200000 reads so far
2011-05-20 04:04:04,444 - INFO - Processed 16300000 reads so far
2011-05-20 04:04:15,720 - INFO - Processed 16400000 reads so far
2011-05-20 04:04:25,996 - INFO - Processed 16500000 reads so far
2011-05-20 04:04:36,443 - INFO - Processed 16600000 reads so far
2011-05-20 04:04:49,843 - INFO - Processed 16700000 reads so far
2011-05-20 04:04:58,719 - INFO - Processed 16800000 reads so far
2011-05-20 04:05:10,943 - INFO - Processed 16900000 reads so far
2011-05-20 04:05:11,266 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:2990000-23010000
2011-05-20 04:05:20,418 - INFO - Processed 17000000 reads so far
2011-05-20 04:05:29,154 - INFO - Processed 17100000 reads so far
2011-05-20 04:05:38,411 - INFO - Processed 17200000 reads so far
2011-05-20 04:05:48,420 - INFO - Processed 17300000 reads so far
2011-05-20 04:05:58,264 - INFO - Processed 17400000 reads so far
2011-05-20 04:06:07,259 - INFO - Processed 17500000 reads so far
2011-05-20 04:06:17,252 - INFO - Processed 17600000 reads so far
2011-05-20 04:06:27,122 - INFO - Processed 17700000 reads so far
2011-05-20 04:06:37,403 - INFO - Processed 17800000 reads so far
2011-05-20 04:06:46,434 - INFO - Processed 17900000 reads so far
2011-05-20 04:06:56,354 - INFO - Processed 18000000 reads so far
2011-05-20 04:07:06,384 - INFO - Processed 18100000 reads so far
2011-05-20 04:07:18,564 - INFO - Processed 18200000 reads so far
2011-05-20 04:07:27,681 - INFO - Processed 18300000 reads so far
2011-05-20 04:07:36,997 - INFO - Processed 18400000 reads so far
2011-05-20 04:07:46,820 - INFO - Processed 18500000 reads so far
2011-05-20 04:07:51,249 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:22990074-43010074
2011-05-20 04:07:58,541 - INFO - Processed 18600000 reads so far
2011-05-20 04:08:08,116 - INFO - Processed 18700000 reads so far
2011-05-20 04:08:17,292 - INFO - Processed 18800000 reads so far
2011-05-20 04:08:26,307 - INFO - Processed 18900000 reads so far
2011-05-20 04:08:36,244 - INFO - Processed 19000000 reads so far
2011-05-20 04:08:47,393 - INFO - Processed 19100000 reads so far
2011-05-20 04:08:57,626 - INFO - Processed 19200000 reads so far
2011-05-20 04:09:08,060 - INFO - Processed 19300000 reads so far
2011-05-20 04:09:18,199 - INFO - Processed 19400000 reads so far
2011-05-20 04:09:27,125 - INFO - Processed 19500000 reads so far
2011-05-20 04:09:36,007 - INFO - Processed 19600000 reads so far
2011-05-20 04:09:45,344 - INFO - Processed 19700000 reads so far
2011-05-20 04:09:54,166 - INFO - Processed 19800000 reads so far
2011-05-20 04:09:54,711 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:42990076-63010076
2011-05-20 04:10:02,172 - INFO - Processed 19900000 reads so far
2011-05-20 04:10:10,409 - INFO - Processed 20000000 reads so far
2011-05-20 04:10:20,139 - INFO - Processed 20100000 reads so far
2011-05-20 04:10:28,801 - INFO - Processed 20200000 reads so far
2011-05-20 04:10:39,617 - INFO - Processed 20300000 reads so far
2011-05-20 04:10:48,174 - INFO - Processed 20400000 reads so far
2011-05-20 04:10:56,017 - INFO - Processed 20500000 reads so far
2011-05-20 04:11:06,120 - INFO - Processed 20600000 reads so far
2011-05-20 04:11:16,153 - INFO - Processed 20700000 reads so far
2011-05-20 04:11:25,344 - INFO - Processed 20800000 reads so far
2011-05-20 04:11:34,744 - INFO - Processed 20900000 reads so far
2011-05-20 04:11:44,063 - INFO - Processed 21000000 reads so far
2011-05-20 04:11:54,549 - INFO - Processed 21100000 reads so far
2011-05-20 04:11:57,541 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:62990101-83010101
2011-05-20 04:12:05,104 - INFO - Processed 21200000 reads so far
2011-05-20 04:12:14,282 - INFO - Processed 21300000 reads so far
2011-05-20 04:12:29,660 - INFO - Processed 21400000 reads so far
2011-05-20 04:12:39,715 - INFO - Processed 21500000 reads so far
2011-05-20 04:12:50,533 - INFO - Processed 21600000 reads so far
2011-05-20 04:13:02,287 - INFO - Processed 21700000 reads so far
2011-05-20 04:13:13,333 - INFO - Processed 21800000 reads so far
2011-05-20 04:13:24,701 - INFO - Processed 21900000 reads so far
2011-05-20 04:13:36,241 - INFO - Processed 22000000 reads so far
2011-05-20 04:13:45,374 - INFO - Processed 22100000 reads so far
2011-05-20 04:13:54,853 - INFO - Processed 22200000 reads so far
2011-05-20 04:14:06,513 - INFO - Processed 22300000 reads so far
2011-05-20 04:14:18,348 - INFO - Processed 22400000 reads so far
2011-05-20 04:14:26,074 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:82990131-103010131
2011-05-20 04:14:27,947 - INFO - Processed 22500000 reads so far
2011-05-20 04:14:39,162 - INFO - Processed 22600000 reads so far
2011-05-20 04:14:50,424 - INFO - Processed 22700000 reads so far
2011-05-20 04:15:01,754 - INFO - Processed 22800000 reads so far
2011-05-20 04:15:13,031 - INFO - Processed 22900000 reads so far
2011-05-20 04:15:23,424 - INFO - Processed 23000000 reads so far
2011-05-20 04:15:34,050 - INFO - Processed 23100000 reads so far
2011-05-20 04:15:43,918 - INFO - Processed 23200000 reads so far
2011-05-20 04:15:54,765 - INFO - Processed 23300000 reads so far
2011-05-20 04:16:06,033 - INFO - Processed 23400000 reads so far
2011-05-20 04:16:17,218 - INFO - Processed 23500000 reads so far
2011-05-20 04:16:27,559 - INFO - Processed 23600000 reads so far
2011-05-20 04:16:39,287 - INFO - Processed 23700000 reads so far
2011-05-20 04:16:51,113 - INFO - Processed 23800000 reads so far
2011-05-20 04:16:52,969 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:102990139-123010139
2011-05-20 04:17:00,624 - INFO - Processed 23900000 reads so far
2011-05-20 04:17:11,817 - INFO - Processed 24000000 reads so far
2011-05-20 04:17:21,468 - INFO - Processed 24100000 reads so far
2011-05-20 04:17:31,512 - INFO - Processed 24200000 reads so far
2011-05-20 04:17:39,380 - INFO - Processed 24300000 reads so far
2011-05-20 04:17:49,117 - INFO - Processed 24400000 reads so far
2011-05-20 04:17:58,088 - INFO - Processed 24500000 reads so far
2011-05-20 04:18:08,827 - INFO - Processed 24600000 reads so far
2011-05-20 04:18:16,502 - INFO - Processed 24700000 reads so far
2011-05-20 04:18:26,993 - INFO - Processed 24800000 reads so far
2011-05-20 04:18:34,988 - INFO - Processed 24900000 reads so far
2011-05-20 04:18:43,237 - INFO - Processed 25000000 reads so far
2011-05-20 04:18:52,809 - INFO - Processed 25100000 reads so far
2011-05-20 04:18:53,203 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:2990003-23010003
2011-05-20 04:19:02,951 - INFO - Processed 25200000 reads so far
2011-05-20 04:19:11,920 - INFO - Processed 25300000 reads so far
2011-05-20 04:19:20,465 - INFO - Processed 25400000 reads so far
2011-05-20 04:19:32,894 - INFO - Processed 25500000 reads so far
2011-05-20 04:19:43,611 - INFO - Processed 25600000 reads so far
2011-05-20 04:19:54,444 - INFO - Processed 25700000 reads so far
2011-05-20 04:20:06,301 - INFO - Processed 25800000 reads so far
2011-05-20 04:20:20,073 - INFO - Processed 25900000 reads so far
2011-05-20 04:20:32,581 - INFO - Processed 26000000 reads so far
2011-05-20 04:20:40,396 - INFO - Processed 26100000 reads so far
2011-05-20 04:20:50,905 - INFO - Processed 26200000 reads so far
2011-05-20 04:21:01,370 - INFO - Processed 26300000 reads so far
2011-05-20 04:21:10,746 - INFO - Processed 26400000 reads so far
2011-05-20 04:21:15,604 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:22990058-43010058
2011-05-20 04:21:21,023 - INFO - Processed 26500000 reads so far
2011-05-20 04:21:30,732 - INFO - Processed 26600000 reads so far
2011-05-20 04:21:41,549 - INFO - Processed 26700000 reads so far
2011-05-20 04:21:52,974 - INFO - Processed 26800000 reads so far
2011-05-20 04:22:03,931 - INFO - Processed 26900000 reads so far
2011-05-20 04:22:15,039 - INFO - Processed 27000000 reads so far
2011-05-20 04:22:27,178 - INFO - Processed 27100000 reads so far
2011-05-20 04:22:39,189 - INFO - Processed 27200000 reads so far
2011-05-20 04:22:50,176 - INFO - Processed 27300000 reads so far
2011-05-20 04:22:59,110 - INFO - Processed 27400000 reads so far
2011-05-20 04:23:08,301 - INFO - Processed 27500000 reads so far
2011-05-20 04:23:19,208 - INFO - Processed 27600000 reads so far
2011-05-20 04:23:30,006 - INFO - Processed 27700000 reads so far
2011-05-20 04:23:42,672 - INFO - Processed 27800000 reads so far
2011-05-20 04:23:47,344 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:42990063-63010063
2011-05-20 04:23:53,599 - INFO - Processed 27900000 reads so far
2011-05-20 04:24:04,409 - INFO - Processed 28000000 reads so far
2011-05-20 04:24:16,894 - INFO - Processed 28100000 reads so far
2011-05-20 04:24:27,628 - INFO - Processed 28200000 reads so far
2011-05-20 04:24:38,805 - INFO - Processed 28300000 reads so far
2011-05-20 04:24:51,409 - INFO - Processed 28400000 reads so far
2011-05-20 04:25:02,532 - INFO - Processed 28500000 reads so far
2011-05-20 04:25:13,470 - INFO - Processed 28600000 reads so far
2011-05-20 04:25:25,327 - INFO - Processed 28700000 reads so far
2011-05-20 04:25:36,488 - INFO - Processed 28800000 reads so far
2011-05-20 04:25:48,617 - INFO - Processed 28900000 reads so far
2011-05-20 04:26:01,788 - INFO - Processed 29000000 reads so far
2011-05-20 04:26:13,302 - INFO - Processed 29100000 reads so far
2011-05-20 04:26:22,841 - INFO - Processed 29200000 reads so far
2011-05-20 04:26:29,308 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:62990077-83010077
2011-05-20 04:26:35,275 - INFO - Processed 29300000 reads so far
2011-05-20 04:26:45,080 - INFO - Processed 29400000 reads so far
2011-05-20 04:26:52,694 - INFO - Processed 29500000 reads so far
2011-05-20 04:27:02,402 - INFO - Processed 29600000 reads so far
2011-05-20 04:27:11,784 - INFO - Processed 29700000 reads so far
2011-05-20 04:27:20,416 - INFO - Processed 29800000 reads so far
2011-05-20 04:27:29,773 - INFO - Processed 29900000 reads so far
2011-05-20 04:27:40,819 - INFO - Processed 30000000 reads so far
2011-05-20 04:27:50,701 - INFO - Processed 30100000 reads so far
2011-05-20 04:28:00,390 - INFO - Processed 30200000 reads so far
2011-05-20 04:28:09,719 - INFO - Processed 30300000 reads so far
2011-05-20 04:28:17,867 - INFO - Processed 30400000 reads so far
2011-05-20 04:28:26,594 - INFO - Processed 30500000 reads so far
2011-05-20 04:28:38,062 - INFO - Processed 30600000 reads so far
2011-05-20 04:28:41,256 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:82990095-103010095
2011-05-20 04:28:48,049 - INFO - Processed 30700000 reads so far
2011-05-20 04:28:57,966 - INFO - Processed 30800000 reads so far
2011-05-20 04:29:07,869 - INFO - Processed 30900000 reads so far
2011-05-20 04:29:17,407 - INFO - Processed 31000000 reads so far
2011-05-20 04:29:25,478 - INFO - Processed 31100000 reads so far
2011-05-20 04:29:33,708 - INFO - Processed 31200000 reads so far
2011-05-20 04:29:41,801 - INFO - Processed 31300000 reads so far
2011-05-20 04:29:50,299 - INFO - Processed 31400000 reads so far
2011-05-20 04:29:59,040 - INFO - Processed 31500000 reads so far
2011-05-20 04:30:08,076 - INFO - Processed 31600000 reads so far
2011-05-20 04:30:16,839 - INFO - Processed 31700000 reads so far
2011-05-20 04:30:26,440 - INFO - Processed 31800000 reads so far
2011-05-20 04:30:37,367 - INFO - Processed 31900000 reads so far
2011-05-20 04:30:48,771 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:102990108-123010108
2011-05-20 04:30:54,130 - INFO - Processed 32000000 reads so far
2011-05-20 04:31:02,267 - INFO - Processed 32100000 reads so far
2011-05-20 04:31:10,957 - INFO - Processed 32200000 reads so far
2011-05-20 04:31:19,490 - INFO - Processed 32300000 reads so far
2011-05-20 04:31:28,376 - INFO - Processed 32400000 reads so far
2011-05-20 04:31:37,822 - INFO - Processed 32500000 reads so far
2011-05-20 04:31:48,479 - INFO - Processed 32600000 reads so far
2011-05-20 04:31:57,920 - INFO - Processed 32700000 reads so far
2011-05-20 04:32:07,623 - INFO - Processed 32800000 reads so far
2011-05-20 04:32:18,596 - INFO - Processed 32900000 reads so far
2011-05-20 04:32:27,340 - INFO - Processed 33000000 reads so far
2011-05-20 04:32:35,449 - INFO - Processed 33100000 reads so far
2011-05-20 04:32:37,409 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13_random:0-20010000
2011-05-20 04:32:38,523 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:2990036-23010036
2011-05-20 04:32:44,500 - INFO - Processed 33200000 reads so far
2011-05-20 04:32:57,255 - INFO - Processed 33300000 reads so far
2011-05-20 04:33:06,820 - INFO - Processed 33400000 reads so far
2011-05-20 04:33:16,559 - INFO - Processed 33500000 reads so far
2011-05-20 04:33:26,893 - INFO - Processed 33600000 reads so far
2011-05-20 04:33:36,546 - INFO - Processed 33700000 reads so far
2011-05-20 04:33:47,681 - INFO - Processed 33800000 reads so far
2011-05-20 04:33:55,734 - INFO - Processed 33900000 reads so far
2011-05-20 04:34:05,799 - INFO - Processed 34000000 reads so far
2011-05-20 04:34:13,768 - INFO - Processed 34100000 reads so far
2011-05-20 04:34:24,928 - INFO - Processed 34200000 reads so far
2011-05-20 04:34:33,486 - INFO - Processed 34300000 reads so far
2011-05-20 04:34:42,302 - INFO - Processed 34400000 reads so far
2011-05-20 04:34:44,012 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:22990049-43010049
2011-05-20 04:34:52,866 - INFO - Processed 34500000 reads so far
2011-05-20 04:35:01,258 - INFO - Processed 34600000 reads so far
2011-05-20 04:35:09,796 - INFO - Processed 34700000 reads so far
2011-05-20 04:35:18,898 - INFO - Processed 34800000 reads so far
2011-05-20 04:35:28,137 - INFO - Processed 34900000 reads so far
2011-05-20 04:35:36,533 - INFO - Processed 35000000 reads so far
2011-05-20 04:35:45,262 - INFO - Processed 35100000 reads so far
2011-05-20 04:35:55,603 - INFO - Processed 35200000 reads so far
2011-05-20 04:36:05,433 - INFO - Processed 35300000 reads so far
2011-05-20 04:36:14,174 - INFO - Processed 35400000 reads so far
2011-05-20 04:36:24,237 - INFO - Processed 35500000 reads so far
2011-05-20 04:36:33,549 - INFO - Processed 35600000 reads so far
2011-05-20 04:36:43,087 - INFO - Processed 35700000 reads so far
2011-05-20 04:36:45,884 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:42993634-63013634
2011-05-20 04:36:52,648 - INFO - Processed 35800000 reads so far
2011-05-20 04:37:12,992 - INFO - Processed 35900000 reads so far
2011-05-20 04:37:22,346 - INFO - Processed 36000000 reads so far
2011-05-20 04:37:32,066 - INFO - Processed 36100000 reads so far
2011-05-20 04:37:42,271 - INFO - Processed 36200000 reads so far
2011-05-20 04:37:54,457 - INFO - Processed 36300000 reads so far
2011-05-20 04:38:05,337 - INFO - Processed 36400000 reads so far
2011-05-20 04:38:18,196 - INFO - Processed 36500000 reads so far
2011-05-20 04:38:31,115 - INFO - Processed 36600000 reads so far
2011-05-20 04:38:42,713 - INFO - Processed 36700000 reads so far
2011-05-20 04:38:53,704 - INFO - Processed 36800000 reads so far
2011-05-20 04:39:04,489 - INFO - Processed 36900000 reads so far
2011-05-20 04:39:15,421 - INFO - Processed 37000000 reads so far
2011-05-20 04:39:20,961 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:62993677-83013677
2011-05-20 04:39:27,316 - INFO - Processed 37100000 reads so far
2011-05-20 04:39:38,202 - INFO - Processed 37200000 reads so far
2011-05-20 04:39:49,408 - INFO - Processed 37300000 reads so far
2011-05-20 04:40:00,350 - INFO - Processed 37400000 reads so far
2011-05-20 04:40:10,576 - INFO - Processed 37500000 reads so far
2011-05-20 04:40:19,132 - INFO - Processed 37600000 reads so far
2011-05-20 04:40:27,253 - INFO - Processed 37700000 reads so far
2011-05-20 04:40:35,692 - INFO - Processed 37800000 reads so far
2011-05-20 04:40:44,634 - INFO - Processed 37900000 reads so far
2011-05-20 04:40:54,174 - INFO - Processed 38000000 reads so far
2011-05-20 04:41:03,433 - INFO - Processed 38100000 reads so far
2011-05-20 04:41:12,511 - INFO - Processed 38200000 reads so far
2011-05-20 04:41:20,585 - INFO - Processed 38300000 reads so far
2011-05-20 04:41:29,157 - INFO - Processed 38400000 reads so far
2011-05-20 04:41:31,647 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:82993679-103013679
2011-05-20 04:41:39,959 - INFO - Processed 38500000 reads so far
2011-05-20 04:41:53,165 - INFO - Processed 38600000 reads so far
2011-05-20 04:42:02,922 - INFO - Processed 38700000 reads so far
2011-05-20 04:42:11,025 - INFO - Processed 38800000 reads so far
2011-05-20 04:42:19,875 - INFO - Processed 38900000 reads so far
2011-05-20 04:42:27,599 - INFO - Processed 39000000 reads so far
2011-05-20 04:42:35,705 - INFO - Processed 39100000 reads so far
2011-05-20 04:42:44,672 - INFO - Processed 39200000 reads so far
2011-05-20 04:42:51,760 - INFO - Processed 39300000 reads so far
2011-05-20 04:42:58,845 - INFO - Processed 39400000 reads so far
2011-05-20 04:43:07,795 - INFO - Processed 39500000 reads so far
2011-05-20 04:43:16,155 - INFO - Processed 39600000 reads so far
2011-05-20 04:43:22,520 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:102993680-123013680
2011-05-20 04:43:24,075 - INFO - Processed 39700000 reads so far
2011-05-20 04:43:32,299 - INFO - Processed 39800000 reads so far
2011-05-20 04:43:40,358 - INFO - Processed 39900000 reads so far
2011-05-20 04:43:49,456 - INFO - Processed 40000000 reads so far
2011-05-20 04:43:57,299 - INFO - Processed 40100000 reads so far
2011-05-20 04:44:06,448 - INFO - Processed 40200000 reads so far
2011-05-20 04:44:14,466 - INFO - Processed 40300000 reads so far
2011-05-20 04:44:22,550 - INFO - Processed 40400000 reads so far
2011-05-20 04:44:29,944 - INFO - Processed 40500000 reads so far
2011-05-20 04:44:37,905 - INFO - Processed 40600000 reads so far
2011-05-20 04:44:45,517 - INFO - Processed 40700000 reads so far
2011-05-20 04:44:52,283 - INFO - Processed 40800000 reads so far
2011-05-20 04:45:01,479 - INFO - Processed 40900000 reads so far
2011-05-20 04:45:09,444 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:122993685-143013685
2011-05-20 04:45:09,719 - INFO - Processed 41000000 reads so far
2011-05-20 04:45:17,960 - INFO - Processed 41100000 reads so far
2011-05-20 04:45:20,650 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:2989999-23009999
2011-05-20 04:45:24,753 - INFO - Processed 41200000 reads so far
2011-05-20 04:45:32,407 - INFO - Processed 41300000 reads so far
2011-05-20 04:45:41,414 - INFO - Processed 41400000 reads so far
2011-05-20 04:45:50,530 - INFO - Processed 41500000 reads so far
2011-05-20 04:45:58,011 - INFO - Processed 41600000 reads so far
2011-05-20 04:46:05,912 - INFO - Processed 41700000 reads so far
2011-05-20 04:46:12,703 - INFO - Processed 41800000 reads so far
2011-05-20 04:46:23,655 - INFO - Processed 41900000 reads so far
2011-05-20 04:46:33,505 - INFO - Processed 42000000 reads so far
2011-05-20 04:46:42,360 - INFO - Processed 42100000 reads so far
2011-05-20 04:46:50,356 - INFO - Processed 42200000 reads so far
2011-05-20 04:46:57,981 - INFO - Processed 42300000 reads so far
2011-05-20 04:47:07,997 - INFO - Processed 42400000 reads so far
2011-05-20 04:47:12,443 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:22990005-43010005
2011-05-20 04:47:16,155 - INFO - Processed 42500000 reads so far
2011-05-20 04:47:23,908 - INFO - Processed 42600000 reads so far
2011-05-20 04:47:34,408 - INFO - Processed 42700000 reads so far
2011-05-20 04:47:47,910 - INFO - Processed 42800000 reads so far
2011-05-20 04:47:58,730 - INFO - Processed 42900000 reads so far
2011-05-20 04:48:10,231 - INFO - Processed 43000000 reads so far
2011-05-20 04:48:20,151 - INFO - Processed 43100000 reads so far
2011-05-20 04:48:27,883 - INFO - Processed 43200000 reads so far
2011-05-20 04:48:36,609 - INFO - Processed 43300000 reads so far
2011-05-20 04:48:45,917 - INFO - Processed 43400000 reads so far
2011-05-20 04:48:55,411 - INFO - Processed 43500000 reads so far
2011-05-20 04:49:04,610 - INFO - Processed 43600000 reads so far
2011-05-20 04:49:12,475 - INFO - Processed 43700000 reads so far
2011-05-20 04:49:22,617 - INFO - Processed 43800000 reads so far
2011-05-20 04:49:24,933 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:42990006-63010006
2011-05-20 04:49:31,769 - INFO - Processed 43900000 reads so far
2011-05-20 04:49:40,933 - INFO - Processed 44000000 reads so far
2011-05-20 04:49:50,698 - INFO - Processed 44100000 reads so far
2011-05-20 04:49:58,737 - INFO - Processed 44200000 reads so far
2011-05-20 04:50:09,507 - INFO - Processed 44300000 reads so far
2011-05-20 04:50:17,686 - INFO - Processed 44400000 reads so far
2011-05-20 04:50:27,162 - INFO - Processed 44500000 reads so far
2011-05-20 04:50:36,145 - INFO - Processed 44600000 reads so far
2011-05-20 04:50:46,395 - INFO - Processed 44700000 reads so far
2011-05-20 04:50:54,812 - INFO - Processed 44800000 reads so far
2011-05-20 04:51:03,349 - INFO - Processed 44900000 reads so far
2011-05-20 04:51:13,685 - INFO - Processed 45000000 reads so far
2011-05-20 04:51:24,266 - INFO - Processed 45100000 reads so far
2011-05-20 04:51:29,085 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:62990010-83010010
2011-05-20 04:51:32,585 - INFO - Processed 45200000 reads so far
2011-05-20 04:51:40,933 - INFO - Processed 45300000 reads so far
2011-05-20 04:51:49,821 - INFO - Processed 45400000 reads so far
2011-05-20 04:52:00,912 - INFO - Processed 45500000 reads so far
2011-05-20 04:52:12,699 - INFO - Processed 45600000 reads so far
2011-05-20 04:52:23,957 - INFO - Processed 45700000 reads so far
2011-05-20 04:52:36,137 - INFO - Processed 45800000 reads so far
2011-05-20 04:52:47,519 - INFO - Processed 45900000 reads so far
2011-05-20 04:52:59,200 - INFO - Processed 46000000 reads so far
2011-05-20 04:53:10,443 - INFO - Processed 46100000 reads so far
2011-05-20 04:53:19,845 - INFO - Processed 46200000 reads so far
2011-05-20 04:53:28,697 - INFO - Processed 46300000 reads so far
2011-05-20 04:53:39,332 - INFO - Processed 46400000 reads so far
2011-05-20 04:53:47,981 - INFO - Processed 46500000 reads so far
2011-05-20 04:53:51,844 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:82990022-103010022
2011-05-20 04:53:57,057 - INFO - Processed 46600000 reads so far
2011-05-20 04:54:05,365 - INFO - Processed 46700000 reads so far
2011-05-20 04:54:14,704 - INFO - Processed 46800000 reads so far
2011-05-20 04:54:23,888 - INFO - Processed 46900000 reads so far
2011-05-20 04:54:32,304 - INFO - Processed 47000000 reads so far
2011-05-20 04:54:40,249 - INFO - Processed 47100000 reads so far
2011-05-20 04:54:48,879 - INFO - Processed 47200000 reads so far
2011-05-20 04:54:57,254 - INFO - Processed 47300000 reads so far
2011-05-20 04:55:05,451 - INFO - Processed 47400000 reads so far
2011-05-20 04:55:15,131 - INFO - Processed 47500000 reads so far
2011-05-20 04:55:24,363 - INFO - Processed 47600000 reads so far
2011-05-20 04:55:33,401 - INFO - Processed 47700000 reads so far
2011-05-20 04:55:42,152 - INFO - Processed 47800000 reads so far
2011-05-20 04:55:51,036 - INFO - Processed 47900000 reads so far
2011-05-20 04:55:51,066 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:102990103-123010103
2011-05-20 04:55:53,916 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:2990007-23010007
2011-05-20 04:56:01,074 - INFO - Processed 48000000 reads so far
2011-05-20 04:56:10,721 - INFO - Processed 48100000 reads so far
2011-05-20 04:56:20,732 - INFO - Processed 48200000 reads so far
2011-05-20 04:56:29,706 - INFO - Processed 48300000 reads so far
2011-05-20 04:56:40,519 - INFO - Processed 48400000 reads so far
2011-05-20 04:56:47,713 - INFO - Processed 48500000 reads so far
2011-05-20 04:56:56,485 - INFO - Processed 48600000 reads so far
2011-05-20 04:57:07,115 - INFO - Processed 48700000 reads so far
2011-05-20 04:57:19,944 - INFO - Processed 48800000 reads so far
2011-05-20 04:57:31,342 - INFO - Processed 48900000 reads so far
2011-05-20 04:57:40,965 - INFO - Processed 49000000 reads so far
2011-05-20 04:57:50,441 - INFO - Processed 49100000 reads so far
2011-05-20 04:57:58,199 - INFO - Processed 49200000 reads so far
2011-05-20 04:58:08,299 - INFO - Processed 49300000 reads so far
2011-05-20 04:58:15,566 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:22990013-43010013
2011-05-20 04:58:17,222 - INFO - Processed 49400000 reads so far
2011-05-20 04:58:29,065 - INFO - Processed 49500000 reads so far
2011-05-20 04:58:36,819 - INFO - Processed 49600000 reads so far
2011-05-20 04:58:45,129 - INFO - Processed 49700000 reads so far
2011-05-20 04:58:53,123 - INFO - Processed 49800000 reads so far
2011-05-20 04:59:00,159 - INFO - Processed 49900000 reads so far
2011-05-20 04:59:07,765 - INFO - Processed 50000000 reads so far
2011-05-20 04:59:15,981 - INFO - Processed 50100000 reads so far
2011-05-20 04:59:23,114 - INFO - Processed 50200000 reads so far
2011-05-20 04:59:32,913 - INFO - Processed 50300000 reads so far
2011-05-20 04:59:39,863 - INFO - Processed 50400000 reads so far
2011-05-20 04:59:47,232 - INFO - Processed 50500000 reads so far
2011-05-20 04:59:55,713 - INFO - Processed 50600000 reads so far
2011-05-20 05:00:03,477 - INFO - Processed 50700000 reads so far
2011-05-20 05:00:06,528 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:42990064-63010064
2011-05-20 05:00:10,417 - INFO - Processed 50800000 reads so far
2011-05-20 05:00:17,486 - INFO - Processed 50900000 reads so far
2011-05-20 05:00:27,463 - INFO - Processed 51000000 reads so far
2011-05-20 05:00:35,236 - INFO - Processed 51100000 reads so far
2011-05-20 05:00:42,781 - INFO - Processed 51200000 reads so far
2011-05-20 05:00:51,944 - INFO - Processed 51300000 reads so far
2011-05-20 05:00:59,791 - INFO - Processed 51400000 reads so far
2011-05-20 05:01:08,111 - INFO - Processed 51500000 reads so far
2011-05-20 05:01:15,964 - INFO - Processed 51600000 reads so far
2011-05-20 05:01:24,473 - INFO - Processed 51700000 reads so far
2011-05-20 05:01:36,869 - INFO - Processed 51800000 reads so far
2011-05-20 05:01:45,586 - INFO - Processed 51900000 reads so far
2011-05-20 05:01:53,559 - INFO - Processed 52000000 reads so far
2011-05-20 05:02:02,775 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:62990065-83010065
2011-05-20 05:02:04,286 - INFO - Processed 52100000 reads so far
2011-05-20 05:02:14,812 - INFO - Processed 52200000 reads so far
2011-05-20 05:02:25,771 - INFO - Processed 52300000 reads so far
2011-05-20 05:02:35,655 - INFO - Processed 52400000 reads so far
2011-05-20 05:02:45,762 - INFO - Processed 52500000 reads so far
2011-05-20 05:02:54,647 - INFO - Processed 52600000 reads so far
2011-05-20 05:03:05,001 - INFO - Processed 52700000 reads so far
2011-05-20 05:03:15,023 - INFO - Processed 52800000 reads so far
2011-05-20 05:03:22,772 - INFO - Processed 52900000 reads so far
2011-05-20 05:03:31,769 - INFO - Processed 53000000 reads so far
2011-05-20 05:03:41,631 - INFO - Processed 53100000 reads so far
2011-05-20 05:03:49,944 - INFO - Processed 53200000 reads so far
2011-05-20 05:03:58,595 - INFO - Processed 53300000 reads so far
2011-05-20 05:04:04,737 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:82990083-103010083
2011-05-20 05:04:06,901 - INFO - Processed 53400000 reads so far
2011-05-20 05:04:14,595 - INFO - Processed 53500000 reads so far
2011-05-20 05:04:22,866 - INFO - Processed 53600000 reads so far
2011-05-20 05:04:30,718 - INFO - Processed 53700000 reads so far
2011-05-20 05:04:41,473 - INFO - Processed 53800000 reads so far
2011-05-20 05:04:51,863 - INFO - Processed 53900000 reads so far
2011-05-20 05:05:02,249 - INFO - Processed 54000000 reads so far
2011-05-20 05:05:10,434 - INFO - Processed 54100000 reads so far
2011-05-20 05:05:18,825 - INFO - Processed 54200000 reads so far
2011-05-20 05:05:26,758 - INFO - Processed 54300000 reads so far
2011-05-20 05:05:37,060 - INFO - Processed 54400000 reads so far
2011-05-20 05:05:38,997 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16_random:0-20010099
2011-05-20 05:05:39,036 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:2989993-23009993
2011-05-20 05:05:47,054 - INFO - Processed 54500000 reads so far
2011-05-20 05:05:57,784 - INFO - Processed 54600000 reads so far
2011-05-20 05:06:09,334 - INFO - Processed 54700000 reads so far
2011-05-20 05:06:19,024 - INFO - Processed 54800000 reads so far
2011-05-20 05:06:29,630 - INFO - Processed 54900000 reads so far
2011-05-20 05:06:40,157 - INFO - Processed 55000000 reads so far
2011-05-20 05:06:50,593 - INFO - Processed 55100000 reads so far
2011-05-20 05:06:59,435 - INFO - Processed 55200000 reads so far
2011-05-20 05:07:07,755 - INFO - Processed 55300000 reads so far
2011-05-20 05:07:15,496 - INFO - Processed 55400000 reads so far
2011-05-20 05:07:23,722 - INFO - Processed 55500000 reads so far
2011-05-20 05:07:33,387 - INFO - Processed 55600000 reads so far
2011-05-20 05:07:41,877 - INFO - Processed 55700000 reads so far
2011-05-20 05:07:49,177 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:22989995-43009995
2011-05-20 05:07:50,057 - INFO - Processed 55800000 reads so far
2011-05-20 05:07:59,708 - INFO - Processed 55900000 reads so far
2011-05-20 05:08:08,389 - INFO - Processed 56000000 reads so far
2011-05-20 05:08:16,768 - INFO - Processed 56100000 reads so far
2011-05-20 05:08:26,228 - INFO - Processed 56200000 reads so far
2011-05-20 05:08:34,079 - INFO - Processed 56300000 reads so far
2011-05-20 05:08:44,738 - INFO - Processed 56400000 reads so far
2011-05-20 05:08:55,632 - INFO - Processed 56500000 reads so far
2011-05-20 05:09:04,498 - INFO - Processed 56600000 reads so far
2011-05-20 05:09:13,313 - INFO - Processed 56700000 reads so far
2011-05-20 05:09:22,625 - INFO - Processed 56800000 reads so far
2011-05-20 05:09:31,093 - INFO - Processed 56900000 reads so far
2011-05-20 05:09:40,008 - INFO - Processed 57000000 reads so far
2011-05-20 05:09:48,275 - INFO - Processed 57100000 reads so far
2011-05-20 05:10:02,944 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:42990000-63010000
2011-05-20 05:10:03,268 - INFO - Processed 57200000 reads so far
2011-05-20 05:10:13,033 - INFO - Processed 57300000 reads so far
2011-05-20 05:10:22,298 - INFO - Processed 57400000 reads so far
2011-05-20 05:10:33,907 - INFO - Processed 57500000 reads so far
2011-05-20 05:10:46,394 - INFO - Processed 57600000 reads so far
2011-05-20 05:11:04,007 - INFO - Processed 57700000 reads so far
2011-05-20 05:11:12,829 - INFO - Processed 57800000 reads so far
2011-05-20 05:11:23,149 - INFO - Processed 57900000 reads so far
2011-05-20 05:11:34,868 - INFO - Processed 58000000 reads so far
2011-05-20 05:11:43,510 - INFO - Processed 58100000 reads so far
2011-05-20 05:11:53,725 - INFO - Processed 58200000 reads so far
2011-05-20 05:12:04,315 - INFO - Processed 58300000 reads so far
2011-05-20 05:12:14,488 - INFO - Processed 58400000 reads so far
2011-05-20 05:12:22,099 - INFO - Processed 58500000 reads so far
2011-05-20 05:12:22,815 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:62990007-83010007
2011-05-20 05:12:30,081 - INFO - Processed 58600000 reads so far
2011-05-20 05:12:39,233 - INFO - Processed 58700000 reads so far
2011-05-20 05:12:48,337 - INFO - Processed 58800000 reads so far
2011-05-20 05:12:57,645 - INFO - Processed 58900000 reads so far
2011-05-20 05:13:05,624 - INFO - Processed 59000000 reads so far
2011-05-20 05:13:14,004 - INFO - Processed 59100000 reads so far
2011-05-20 05:13:23,772 - INFO - Processed 59200000 reads so far
2011-05-20 05:13:34,283 - INFO - Processed 59300000 reads so far
2011-05-20 05:13:43,639 - INFO - Processed 59400000 reads so far
2011-05-20 05:13:52,012 - INFO - Processed 59500000 reads so far
2011-05-20 05:14:00,048 - INFO - Processed 59600000 reads so far
2011-05-20 05:14:08,243 - INFO - Processed 59700000 reads so far
2011-05-20 05:14:17,525 - INFO - Processed 59800000 reads so far
2011-05-20 05:14:24,523 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:82990012-103010012
2011-05-20 05:14:26,853 - INFO - Processed 59900000 reads so far
2011-05-20 05:14:34,884 - INFO - Processed 60000000 reads so far
2011-05-20 05:14:42,912 - INFO - Processed 60100000 reads so far
2011-05-20 05:14:53,208 - INFO - Processed 60200000 reads so far
2011-05-20 05:15:03,131 - INFO - Processed 60300000 reads so far
2011-05-20 05:15:12,757 - INFO - Processed 60400000 reads so far
2011-05-20 05:15:21,807 - INFO - Processed 60500000 reads so far
2011-05-20 05:15:31,096 - INFO - Processed 60600000 reads so far
2011-05-20 05:15:42,040 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17_random:0-20010020
2011-05-20 05:15:42,573 - INFO - Processed 60700000 reads so far
2011-05-20 05:15:44,326 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:2990002-23010002
2011-05-20 05:15:53,554 - INFO - Processed 60800000 reads so far
2011-05-20 05:16:02,412 - INFO - Processed 60900000 reads so far
2011-05-20 05:16:10,183 - INFO - Processed 61000000 reads so far
2011-05-20 05:16:20,551 - INFO - Processed 61100000 reads so far
2011-05-20 05:16:28,888 - INFO - Processed 61200000 reads so far
2011-05-20 05:16:37,961 - INFO - Processed 61300000 reads so far
2011-05-20 05:16:48,417 - INFO - Processed 61400000 reads so far
2011-05-20 05:16:57,355 - INFO - Processed 61500000 reads so far
2011-05-20 05:17:06,226 - INFO - Processed 61600000 reads so far
2011-05-20 05:17:14,564 - INFO - Processed 61700000 reads so far
2011-05-20 05:17:23,946 - INFO - Processed 61800000 reads so far
2011-05-20 05:17:31,186 - INFO - Processed 61900000 reads so far
2011-05-20 05:17:39,409 - INFO - Processed 62000000 reads so far
2011-05-20 05:17:48,200 - INFO - Processed 62100000 reads so far
2011-05-20 05:17:51,343 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:22990012-43010012
2011-05-20 05:17:55,818 - INFO - Processed 62200000 reads so far
2011-05-20 05:18:04,896 - INFO - Processed 62300000 reads so far
2011-05-20 05:18:13,884 - INFO - Processed 62400000 reads so far
2011-05-20 05:18:21,260 - INFO - Processed 62500000 reads so far
2011-05-20 05:18:28,771 - INFO - Processed 62600000 reads so far
2011-05-20 05:18:35,630 - INFO - Processed 62700000 reads so far
2011-05-20 05:18:42,753 - INFO - Processed 62800000 reads so far
2011-05-20 05:18:51,024 - INFO - Processed 62900000 reads so far
2011-05-20 05:18:59,406 - INFO - Processed 63000000 reads so far
2011-05-20 05:19:07,129 - INFO - Processed 63100000 reads so far
2011-05-20 05:19:15,785 - INFO - Processed 63200000 reads so far
2011-05-20 05:19:24,914 - INFO - Processed 63300000 reads so far
2011-05-20 05:19:31,872 - INFO - Processed 63400000 reads so far
2011-05-20 05:19:38,939 - INFO - Processed 63500000 reads so far
2011-05-20 05:19:40,554 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:42990017-63010017
2011-05-20 05:19:48,289 - INFO - Processed 63600000 reads so far
2011-05-20 05:19:55,243 - INFO - Processed 63700000 reads so far
2011-05-20 05:20:02,201 - INFO - Processed 63800000 reads so far
2011-05-20 05:20:09,394 - INFO - Processed 63900000 reads so far
2011-05-20 05:20:17,567 - INFO - Processed 64000000 reads so far
2011-05-20 05:20:26,658 - INFO - Processed 64100000 reads so far
2011-05-20 05:20:35,117 - INFO - Processed 64200000 reads so far
2011-05-20 05:20:46,085 - INFO - Processed 64300000 reads so far
2011-05-20 05:20:55,411 - INFO - Processed 64400000 reads so far
2011-05-20 05:21:03,588 - INFO - Processed 64500000 reads so far
2011-05-20 05:21:10,913 - INFO - Processed 64600000 reads so far
2011-05-20 05:21:19,067 - INFO - Processed 64700000 reads so far
2011-05-20 05:21:27,865 - INFO - Processed 64800000 reads so far
2011-05-20 05:21:36,194 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:62990051-83010051
2011-05-20 05:21:36,814 - INFO - Processed 64900000 reads so far
2011-05-20 05:21:46,208 - INFO - Processed 65000000 reads so far
2011-05-20 05:21:56,473 - INFO - Processed 65100000 reads so far
2011-05-20 05:22:05,351 - INFO - Processed 65200000 reads so far
2011-05-20 05:22:12,660 - INFO - Processed 65300000 reads so far
2011-05-20 05:22:20,132 - INFO - Processed 65400000 reads so far
2011-05-20 05:22:28,381 - INFO - Processed 65500000 reads so far
2011-05-20 05:22:37,634 - INFO - Processed 65600000 reads so far
2011-05-20 05:22:46,070 - INFO - Processed 65700000 reads so far
2011-05-20 05:22:55,118 - INFO - Processed 65800000 reads so far
2011-05-20 05:23:02,804 - INFO - Processed 65900000 reads so far
2011-05-20 05:23:12,557 - INFO - Processed 66000000 reads so far
2011-05-20 05:23:22,461 - INFO - Processed 66100000 reads so far
2011-05-20 05:23:31,952 - INFO - Processed 66200000 reads so far
2011-05-20 05:23:36,649 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:82990052-103010052
2011-05-20 05:23:41,606 - INFO - Processed 66300000 reads so far
2011-05-20 05:23:52,533 - INFO - Processed 66400000 reads so far
2011-05-20 05:24:03,209 - INFO - Processed 66500000 reads so far
2011-05-20 05:24:14,841 - INFO - Processed 66600000 reads so far
2011-05-20 05:24:24,029 - INFO - Processed 66700000 reads so far
2011-05-20 05:24:33,953 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:2990039-23010039
2011-05-20 05:24:34,675 - INFO - Processed 66800000 reads so far
2011-05-20 05:24:43,086 - INFO - Processed 66900000 reads so far
2011-05-20 05:24:52,154 - INFO - Processed 67000000 reads so far
2011-05-20 05:25:01,118 - INFO - Processed 67100000 reads so far
2011-05-20 05:25:11,402 - INFO - Processed 67200000 reads so far
2011-05-20 05:25:22,331 - INFO - Processed 67300000 reads so far
2011-05-20 05:25:32,005 - INFO - Processed 67400000 reads so far
2011-05-20 05:25:43,306 - INFO - Processed 67500000 reads so far
2011-05-20 05:25:52,680 - INFO - Processed 67600000 reads so far
2011-05-20 05:26:00,483 - INFO - Processed 67700000 reads so far
2011-05-20 05:26:09,390 - INFO - Processed 67800000 reads so far
2011-05-20 05:26:17,632 - INFO - Processed 67900000 reads so far
2011-05-20 05:26:28,461 - INFO - Processed 68000000 reads so far
2011-05-20 05:26:38,166 - INFO - Processed 68100000 reads so far
2011-05-20 05:26:39,805 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:22990065-43010065
2011-05-20 05:26:48,727 - INFO - Processed 68200000 reads so far
2011-05-20 05:26:57,660 - INFO - Processed 68300000 reads so far
2011-05-20 05:27:06,162 - INFO - Processed 68400000 reads so far
2011-05-20 05:27:16,750 - INFO - Processed 68500000 reads so far
2011-05-20 05:27:24,674 - INFO - Processed 68600000 reads so far
2011-05-20 05:27:33,061 - INFO - Processed 68700000 reads so far
2011-05-20 05:27:41,198 - INFO - Processed 68800000 reads so far
2011-05-20 05:27:52,381 - INFO - Processed 68900000 reads so far
2011-05-20 05:28:00,266 - INFO - Processed 69000000 reads so far
2011-05-20 05:28:09,444 - INFO - Processed 69100000 reads so far
2011-05-20 05:28:17,684 - INFO - Processed 69200000 reads so far
2011-05-20 05:28:27,932 - INFO - Processed 69300000 reads so far
2011-05-20 05:28:37,543 - INFO - Processed 69400000 reads so far
2011-05-20 05:28:44,406 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:42990072-63010072
2011-05-20 05:28:46,322 - INFO - Processed 69500000 reads so far
2011-05-20 05:28:54,901 - INFO - Processed 69600000 reads so far
2011-05-20 05:29:03,510 - INFO - Processed 69700000 reads so far
2011-05-20 05:29:11,915 - INFO - Processed 69800000 reads so far
2011-05-20 05:29:21,429 - INFO - Processed 69900000 reads so far
2011-05-20 05:29:31,257 - INFO - Processed 70000000 reads so far
2011-05-20 05:29:39,300 - INFO - Processed 70100000 reads so far
2011-05-20 05:29:49,285 - INFO - Processed 70200000 reads so far
2011-05-20 05:29:57,099 - INFO - Processed 70300000 reads so far
2011-05-20 05:30:05,676 - INFO - Processed 70400000 reads so far
2011-05-20 05:30:14,668 - INFO - Processed 70500000 reads so far
2011-05-20 05:30:24,794 - INFO - Processed 70600000 reads so far
2011-05-20 05:30:35,311 - INFO - Processed 70700000 reads so far
2011-05-20 05:30:39,233 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:2989993-23009993
2011-05-20 05:30:43,932 - INFO - Processed 70800000 reads so far
2011-05-20 05:30:52,687 - INFO - Processed 70900000 reads so far
2011-05-20 05:31:01,029 - INFO - Processed 71000000 reads so far
2011-05-20 05:31:10,466 - INFO - Processed 71100000 reads so far
2011-05-20 05:31:20,185 - INFO - Processed 71200000 reads so far
2011-05-20 05:31:29,004 - INFO - Processed 71300000 reads so far
2011-05-20 05:31:37,927 - INFO - Processed 71400000 reads so far
2011-05-20 05:31:48,267 - INFO - Processed 71500000 reads so far
2011-05-20 05:31:57,928 - INFO - Processed 71600000 reads so far
2011-05-20 05:32:06,667 - INFO - Processed 71700000 reads so far
2011-05-20 05:32:19,195 - INFO - Processed 71800000 reads so far
2011-05-20 05:32:27,535 - INFO - Processed 71900000 reads so far
2011-05-20 05:32:38,276 - INFO - Processed 72000000 reads so far
2011-05-20 05:32:46,613 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:22990013-43010013
2011-05-20 05:32:46,962 - INFO - Processed 72100000 reads so far
2011-05-20 05:32:57,083 - INFO - Processed 72200000 reads so far
2011-05-20 05:33:07,270 - INFO - Processed 72300000 reads so far
2011-05-20 05:33:16,553 - INFO - Processed 72400000 reads so far
2011-05-20 05:33:26,208 - INFO - Processed 72500000 reads so far
2011-05-20 05:33:34,044 - INFO - Processed 72600000 reads so far
2011-05-20 05:33:44,375 - INFO - Processed 72700000 reads so far
2011-05-20 05:33:53,895 - INFO - Processed 72800000 reads so far
2011-05-20 05:34:03,881 - INFO - Processed 72900000 reads so far
2011-05-20 05:34:14,064 - INFO - Processed 73000000 reads so far
2011-05-20 05:34:22,616 - INFO - Processed 73100000 reads so far
2011-05-20 05:34:30,482 - INFO - Processed 73200000 reads so far
2011-05-20 05:34:40,938 - INFO - Processed 73300000 reads so far
2011-05-20 05:34:50,642 - INFO - Processed 73400000 reads so far
2011-05-20 05:34:56,891 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:42990022-63010022
2011-05-20 05:35:00,593 - INFO - Processed 73500000 reads so far
2011-05-20 05:35:09,655 - INFO - Processed 73600000 reads so far
2011-05-20 05:35:18,326 - INFO - Processed 73700000 reads so far
2011-05-20 05:35:26,910 - INFO - Processed 73800000 reads so far
2011-05-20 05:35:34,802 - INFO - Processed 73900000 reads so far
2011-05-20 05:35:43,046 - INFO - Processed 74000000 reads so far
2011-05-20 05:35:52,600 - INFO - Processed 74100000 reads so far
2011-05-20 05:36:02,432 - INFO - Processed 74200000 reads so far
2011-05-20 05:36:12,968 - INFO - Processed 74300000 reads so far
2011-05-20 05:36:21,593 - INFO - Processed 74400000 reads so far
2011-05-20 05:36:30,752 - INFO - Processed 74500000 reads so far
2011-05-20 05:36:39,075 - INFO - Processed 74600000 reads so far
2011-05-20 05:36:49,298 - INFO - Processed 74700000 reads so far
2011-05-20 05:36:58,897 - INFO - Processed 74800000 reads so far
2011-05-20 05:37:00,113 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:62990047-83010047
2011-05-20 05:37:06,762 - INFO - Processed 74900000 reads so far
2011-05-20 05:37:16,316 - INFO - Processed 75000000 reads so far
2011-05-20 05:37:25,182 - INFO - Processed 75100000 reads so far
2011-05-20 05:37:32,776 - INFO - Processed 75200000 reads so far
2011-05-20 05:37:42,318 - INFO - Processed 75300000 reads so far
2011-05-20 05:37:51,190 - INFO - Processed 75400000 reads so far
2011-05-20 05:37:59,394 - INFO - Processed 75500000 reads so far
2011-05-20 05:38:08,662 - INFO - Processed 75600000 reads so far
2011-05-20 05:38:18,532 - INFO - Processed 75700000 reads so far
2011-05-20 05:38:28,084 - INFO - Processed 75800000 reads so far
2011-05-20 05:38:39,179 - INFO - Processed 75900000 reads so far
2011-05-20 05:38:48,938 - INFO - Processed 76000000 reads so far
2011-05-20 05:39:01,395 - INFO - Processed 76100000 reads so far
2011-05-20 05:39:09,480 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:82990079-103010079
2011-05-20 05:39:11,992 - INFO - Processed 76200000 reads so far
2011-05-20 05:39:22,378 - INFO - Processed 76300000 reads so far
2011-05-20 05:39:32,524 - INFO - Processed 76400000 reads so far
2011-05-20 05:39:41,138 - INFO - Processed 76500000 reads so far
2011-05-20 05:39:49,902 - INFO - Processed 76600000 reads so far
2011-05-20 05:39:58,572 - INFO - Processed 76700000 reads so far
2011-05-20 05:40:09,010 - INFO - Processed 76800000 reads so far
2011-05-20 05:40:17,588 - INFO - Processed 76900000 reads so far
2011-05-20 05:40:26,236 - INFO - Processed 77000000 reads so far
2011-05-20 05:40:34,817 - INFO - Processed 77100000 reads so far
2011-05-20 05:40:45,448 - INFO - Processed 77200000 reads so far
2011-05-20 05:40:53,782 - INFO - Processed 77300000 reads so far
2011-05-20 05:41:03,121 - INFO - Processed 77400000 reads so far
2011-05-20 05:41:11,664 - INFO - Processed 77500000 reads so far
2011-05-20 05:41:14,036 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:102990086-123010086
2011-05-20 05:41:19,766 - INFO - Processed 77600000 reads so far
2011-05-20 05:41:29,546 - INFO - Processed 77700000 reads so far
2011-05-20 05:41:41,321 - INFO - Processed 77800000 reads so far
2011-05-20 05:41:52,120 - INFO - Processed 77900000 reads so far
2011-05-20 05:42:00,659 - INFO - Processed 78000000 reads so far
2011-05-20 05:42:10,204 - INFO - Processed 78100000 reads so far
2011-05-20 05:42:20,840 - INFO - Processed 78200000 reads so far
2011-05-20 05:42:35,680 - INFO - Processed 78300000 reads so far
2011-05-20 05:42:46,073 - INFO - Processed 78400000 reads so far
2011-05-20 05:42:54,863 - INFO - Processed 78500000 reads so far
2011-05-20 05:43:03,936 - INFO - Processed 78600000 reads so far
2011-05-20 05:43:12,046 - INFO - Processed 78700000 reads so far
2011-05-20 05:43:23,466 - INFO - Processed 78800000 reads so far
2011-05-20 05:43:29,488 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:122990097-143010097
2011-05-20 05:43:33,363 - INFO - Processed 78900000 reads so far
2011-05-20 05:43:42,427 - INFO - Processed 79000000 reads so far
2011-05-20 05:43:53,187 - INFO - Processed 79100000 reads so far
2011-05-20 05:44:01,253 - INFO - Processed 79200000 reads so far
2011-05-20 05:44:11,611 - INFO - Processed 79300000 reads so far
2011-05-20 05:44:22,430 - INFO - Processed 79400000 reads so far
2011-05-20 05:44:30,849 - INFO - Processed 79500000 reads so far
2011-05-20 05:44:40,709 - INFO - Processed 79600000 reads so far
2011-05-20 05:44:50,078 - INFO - Processed 79700000 reads so far
2011-05-20 05:45:01,255 - INFO - Processed 79800000 reads so far
2011-05-20 05:45:12,581 - INFO - Processed 79900000 reads so far
2011-05-20 05:45:23,543 - INFO - Processed 80000000 reads so far
2011-05-20 05:45:36,505 - INFO - Processed 80100000 reads so far
2011-05-20 05:45:46,258 - INFO - Processed 80200000 reads so far
2011-05-20 05:45:48,247 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:142990107-163010107
2011-05-20 05:45:57,819 - INFO - Processed 80300000 reads so far
2011-05-20 05:46:07,298 - INFO - Processed 80400000 reads so far
2011-05-20 05:46:19,793 - INFO - Processed 80500000 reads so far
2011-05-20 05:46:31,521 - INFO - Processed 80600000 reads so far
2011-05-20 05:46:39,986 - INFO - Processed 80700000 reads so far
2011-05-20 05:46:48,727 - INFO - Processed 80800000 reads so far
2011-05-20 05:46:56,702 - INFO - Processed 80900000 reads so far
2011-05-20 05:47:04,558 - INFO - Processed 81000000 reads so far
2011-05-20 05:47:13,722 - INFO - Processed 81100000 reads so far
2011-05-20 05:47:23,606 - INFO - Processed 81200000 reads so far
2011-05-20 05:47:31,503 - INFO - Processed 81300000 reads so far
2011-05-20 05:47:39,673 - INFO - Processed 81400000 reads so far
2011-05-20 05:47:47,862 - INFO - Processed 81500000 reads so far
2011-05-20 05:47:50,969 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:162990151-183010151
2011-05-20 05:47:58,767 - INFO - Processed 81600000 reads so far
2011-05-20 05:48:13,206 - INFO - Processed 81700000 reads so far
2011-05-20 05:48:20,963 - INFO - Processed 81800000 reads so far
2011-05-20 05:48:30,099 - INFO - Processed 81900000 reads so far
2011-05-20 05:48:38,074 - INFO - Processed 82000000 reads so far
2011-05-20 05:48:46,850 - INFO - Processed 82100000 reads so far
2011-05-20 05:48:55,597 - INFO - Processed 82200000 reads so far
2011-05-20 05:49:06,403 - INFO - Processed 82300000 reads so far
2011-05-20 05:49:14,551 - INFO - Processed 82400000 reads so far
2011-05-20 05:49:22,544 - INFO - Processed 82500000 reads so far
2011-05-20 05:49:31,782 - INFO - Processed 82600000 reads so far
2011-05-20 05:49:41,902 - INFO - Processed 82700000 reads so far
2011-05-20 05:49:50,583 - INFO - Processed 82800000 reads so far
2011-05-20 05:49:57,884 - INFO - Processed 82900000 reads so far
2011-05-20 05:50:00,985 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:182990164-203010164
2011-05-20 05:50:07,879 - INFO - Processed 83000000 reads so far
2011-05-20 05:50:19,095 - INFO - Processed 83100000 reads so far
2011-05-20 05:50:26,861 - INFO - Processed 83200000 reads so far
2011-05-20 05:50:36,767 - INFO - Processed 83300000 reads so far
2011-05-20 05:50:44,699 - INFO - Processed 83400000 reads so far
2011-05-20 05:50:52,373 - INFO - Processed 83500000 reads so far
2011-05-20 05:51:01,027 - INFO - Processed 83600000 reads so far
2011-05-20 05:51:08,841 - INFO - Processed 83700000 reads so far
2011-05-20 05:51:17,855 - INFO - Processed 83800000 reads so far
2011-05-20 05:51:27,867 - INFO - Processed 83900000 reads so far
2011-05-20 05:51:28,083 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1_random:0-20010000
2011-05-20 05:51:38,187 - INFO - Processed 84000000 reads so far
2011-05-20 05:51:40,293 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:2990011-23010011
2011-05-20 05:51:46,280 - INFO - Processed 84100000 reads so far
2011-05-20 05:51:58,566 - INFO - Processed 84200000 reads so far
2011-05-20 05:52:09,440 - INFO - Processed 84300000 reads so far
2011-05-20 05:52:22,482 - INFO - Processed 84400000 reads so far
2011-05-20 05:52:32,318 - INFO - Processed 84500000 reads so far
2011-05-20 05:52:44,184 - INFO - Processed 84600000 reads so far
2011-05-20 05:52:51,764 - INFO - Processed 84700000 reads so far
2011-05-20 05:53:02,052 - INFO - Processed 84800000 reads so far
2011-05-20 05:53:11,959 - INFO - Processed 84900000 reads so far
2011-05-20 05:53:20,843 - INFO - Processed 85000000 reads so far
2011-05-20 05:53:29,666 - INFO - Processed 85100000 reads so far
2011-05-20 05:53:37,772 - INFO - Processed 85200000 reads so far
2011-05-20 05:53:48,755 - INFO - Processed 85300000 reads so far
2011-05-20 05:53:57,360 - INFO - Processed 85400000 reads so far
2011-05-20 05:53:59,166 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:22990022-43010022
2011-05-20 05:54:06,311 - INFO - Processed 85500000 reads so far
2011-05-20 05:54:17,686 - INFO - Processed 85600000 reads so far
2011-05-20 05:54:28,747 - INFO - Processed 85700000 reads so far
2011-05-20 05:54:37,620 - INFO - Processed 85800000 reads so far
2011-05-20 05:54:49,527 - INFO - Processed 85900000 reads so far
2011-05-20 05:55:00,401 - INFO - Processed 86000000 reads so far
2011-05-20 05:55:08,677 - INFO - Processed 86100000 reads so far
2011-05-20 05:55:17,588 - INFO - Processed 86200000 reads so far
2011-05-20 05:55:26,179 - INFO - Processed 86300000 reads so far
2011-05-20 05:55:34,907 - INFO - Processed 86400000 reads so far
2011-05-20 05:55:43,691 - INFO - Processed 86500000 reads so far
2011-05-20 05:55:52,608 - INFO - Processed 86600000 reads so far
2011-05-20 05:56:02,313 - INFO - Processed 86700000 reads so far
2011-05-20 05:56:07,178 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:42990038-63010038
2011-05-20 05:56:12,648 - INFO - Processed 86800000 reads so far
2011-05-20 05:56:21,539 - INFO - Processed 86900000 reads so far
2011-05-20 05:56:30,576 - INFO - Processed 87000000 reads so far
2011-05-20 05:56:41,682 - INFO - Processed 87100000 reads so far
2011-05-20 05:56:50,174 - INFO - Processed 87200000 reads so far
2011-05-20 05:56:58,480 - INFO - Processed 87300000 reads so far
2011-05-20 05:57:09,371 - INFO - Processed 87400000 reads so far
2011-05-20 05:57:20,774 - INFO - Processed 87500000 reads so far
2011-05-20 05:57:31,987 - INFO - Processed 87600000 reads so far
2011-05-20 05:57:43,223 - INFO - Processed 87700000 reads so far
2011-05-20 05:57:54,291 - INFO - Processed 87800000 reads so far
2011-05-20 05:58:05,220 - INFO - Processed 87900000 reads so far
2011-05-20 05:58:16,385 - INFO - Processed 88000000 reads so far
2011-05-20 05:58:23,380 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:62990039-83010039
2011-05-20 05:58:24,860 - INFO - Processed 88100000 reads so far
2011-05-20 05:58:33,429 - INFO - Processed 88200000 reads so far
2011-05-20 05:58:42,493 - INFO - Processed 88300000 reads so far
2011-05-20 05:58:49,673 - INFO - Processed 88400000 reads so far
2011-05-20 05:58:58,001 - INFO - Processed 88500000 reads so far
2011-05-20 05:59:05,806 - INFO - Processed 88600000 reads so far
2011-05-20 05:59:14,674 - INFO - Processed 88700000 reads so far
2011-05-20 05:59:23,436 - INFO - Processed 88800000 reads so far
2011-05-20 05:59:34,202 - INFO - Processed 88900000 reads so far
2011-05-20 05:59:45,927 - INFO - Processed 89000000 reads so far
2011-05-20 05:59:57,491 - INFO - Processed 89100000 reads so far
2011-05-20 06:00:08,347 - INFO - Processed 89200000 reads so far
2011-05-20 06:00:21,463 - INFO - Processed 89300000 reads so far
2011-05-20 06:00:33,224 - INFO - Processed 89400000 reads so far
2011-05-20 06:00:37,453 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:82990058-103010058
2011-05-20 06:00:44,027 - INFO - Processed 89500000 reads so far
2011-05-20 06:00:55,160 - INFO - Processed 89600000 reads so far
2011-05-20 06:01:06,286 - INFO - Processed 89700000 reads so far
2011-05-20 06:01:17,521 - INFO - Processed 89800000 reads so far
2011-05-20 06:01:36,524 - INFO - Processed 89900000 reads so far
2011-05-20 06:01:47,567 - INFO - Processed 90000000 reads so far
2011-05-20 06:01:58,067 - INFO - Processed 90100000 reads so far
2011-05-20 06:02:06,333 - INFO - Processed 90200000 reads so far
2011-05-20 06:02:15,162 - INFO - Processed 90300000 reads so far
2011-05-20 06:02:22,731 - INFO - Processed 90400000 reads so far
2011-05-20 06:02:29,891 - INFO - Processed 90500000 reads so far
2011-05-20 06:02:38,020 - INFO - Processed 90600000 reads so far
2011-05-20 06:02:46,801 - INFO - Processed 90700000 reads so far
2011-05-20 06:02:53,881 - INFO - Processed 90800000 reads so far
2011-05-20 06:03:02,293 - INFO - Processed 90900000 reads so far
2011-05-20 06:03:10,485 - INFO - Processed 91000000 reads so far
2011-05-20 06:03:19,193 - INFO - Processed 91100000 reads so far
2011-05-20 06:03:28,860 - INFO - Processed 91200000 reads so far
2011-05-20 06:03:40,513 - INFO - Processed 91300000 reads so far
2011-05-20 06:03:47,766 - INFO - Processed 91400000 reads so far
2011-05-20 06:03:54,593 - INFO - Processed 91500000 reads so far
2011-05-20 06:04:01,349 - INFO - Processed 91600000 reads so far
2011-05-20 06:04:07,963 - INFO - Processed 91700000 reads so far
2011-05-20 06:04:14,969 - INFO - Processed 91800000 reads so far
2011-05-20 06:04:23,001 - INFO - Processed 91900000 reads so far
2011-05-20 06:04:31,290 - INFO - Processed 92000000 reads so far
2011-05-20 06:04:39,992 - INFO - Processed 92100000 reads so far
2011-05-20 06:04:49,262 - INFO - Processed 92200000 reads so far
2011-05-20 06:04:57,187 - INFO - Processed 92300000 reads so far
2011-05-20 06:05:05,872 - INFO - Processed 92400000 reads so far
2011-05-20 06:05:14,861 - INFO - Processed 92500000 reads so far
2011-05-20 06:05:22,218 - INFO - Processed 92600000 reads so far
2011-05-20 06:05:31,362 - INFO - Processed 92700000 reads so far
2011-05-20 06:05:38,720 - INFO - Processed 92800000 reads so far
2011-05-20 06:05:47,606 - INFO - Processed 92900000 reads so far
2011-05-20 06:05:55,051 - INFO - Processed 93000000 reads so far
2011-05-20 06:06:03,207 - INFO - Processed 93100000 reads so far
2011-05-20 06:06:10,423 - INFO - Processed 93200000 reads so far
2011-05-20 06:06:17,921 - INFO - Processed 93300000 reads so far
2011-05-20 06:06:25,671 - INFO - Processed 93400000 reads so far
2011-05-20 06:06:33,595 - INFO - Processed 93500000 reads so far
2011-05-20 06:06:41,425 - INFO - Processed 93600000 reads so far
2011-05-20 06:06:47,819 - INFO - Processed 93700000 reads so far
2011-05-20 06:06:55,527 - INFO - Processed 93800000 reads so far
2011-05-20 06:07:02,823 - INFO - Processed 93900000 reads so far
2011-05-20 06:07:09,419 - INFO - Processed 94000000 reads so far
2011-05-20 06:07:15,749 - INFO - Processed 94100000 reads so far
2011-05-20 06:07:22,805 - INFO - Processed 94200000 reads so far
2011-05-20 06:07:31,174 - INFO - Processed 94300000 reads so far
2011-05-20 06:07:38,200 - INFO - Processed 94400000 reads so far
2011-05-20 06:07:44,613 - INFO - Processed 94500000 reads so far
2011-05-20 06:07:52,265 - INFO - Processed 94600000 reads so far
2011-05-20 06:07:59,272 - INFO - Processed 94700000 reads so far
2011-05-20 06:08:07,671 - INFO - Processed 94800000 reads so far
2011-05-20 06:08:14,970 - INFO - Processed 94900000 reads so far
2011-05-20 06:08:22,859 - INFO - Processed 95000000 reads so far
2011-05-20 06:08:31,499 - INFO - Processed 95100000 reads so far
2011-05-20 06:08:39,231 - INFO - Processed 95200000 reads so far
2011-05-20 06:08:47,220 - INFO - Processed 95300000 reads so far
2011-05-20 06:08:58,899 - INFO - Processed 95400000 reads so far
2011-05-20 06:09:09,356 - INFO - Processed 95500000 reads so far
2011-05-20 06:09:18,127 - INFO - Processed 95600000 reads so far
2011-05-20 06:09:28,062 - INFO - Processed 95700000 reads so far
2011-05-20 06:09:38,356 - INFO - Processed 95800000 reads so far
2011-05-20 06:09:47,419 - INFO - Processed 95900000 reads so far
2011-05-20 06:09:57,873 - INFO - Processed 96000000 reads so far
2011-05-20 06:10:07,241 - INFO - Processed 96100000 reads so far
2011-05-20 06:10:16,136 - INFO - Processed 96200000 reads so far
2011-05-20 06:10:24,900 - INFO - Processed 96300000 reads so far
2011-05-20 06:10:40,642 - INFO - Processed 96400000 reads so far
2011-05-20 06:10:49,351 - INFO - Processed 96500000 reads so far
2011-05-20 06:11:05,447 - INFO - Processed 96600000 reads so far
2011-05-20 06:11:14,899 - INFO - Processed 96700000 reads so far
2011-05-20 06:11:27,604 - INFO - Processed 96800000 reads so far
2011-05-20 06:11:37,792 - INFO - Processed 96900000 reads so far
2011-05-20 06:11:48,131 - INFO - Processed 97000000 reads so far
2011-05-20 06:11:58,547 - INFO - Processed 97100000 reads so far
2011-05-20 06:12:10,200 - INFO - Processed 97200000 reads so far
2011-05-20 06:12:19,542 - INFO - Processed 97300000 reads so far
2011-05-20 06:12:36,709 - INFO - Processed 97400000 reads so far
2011-05-20 06:12:46,460 - INFO - Processed 97500000 reads so far
2011-05-20 06:12:59,438 - INFO - Processed 97600000 reads so far
2011-05-20 06:13:09,911 - INFO - Processed 97700000 reads so far
2011-05-20 06:13:27,794 - INFO - Processed 97800000 reads so far
2011-05-20 06:13:38,977 - INFO - Processed 97900000 reads so far
2011-05-20 06:13:48,060 - INFO - Processed 98000000 reads so far
2011-05-20 06:13:57,237 - INFO - Processed 98100000 reads so far
2011-05-20 06:14:06,402 - INFO - Processed 98200000 reads so far
2011-05-20 06:14:15,972 - INFO - Processed 98300000 reads so far
2011-05-20 06:14:25,073 - INFO - Processed 98400000 reads so far
2011-05-20 06:14:34,720 - INFO - Processed 98500000 reads so far
2011-05-20 06:14:45,925 - INFO - Processed 98600000 reads so far
2011-05-20 06:14:55,123 - INFO - Processed 98700000 reads so far
2011-05-20 06:15:04,022 - INFO - Processed 98800000 reads so far
2011-05-20 06:15:15,087 - INFO - Processed 98900000 reads so far
2011-05-20 06:15:23,161 - INFO - Processed 99000000 reads so far
2011-05-20 06:15:32,962 - INFO - Processed 99100000 reads so far
2011-05-20 06:15:41,998 - INFO - Processed 99200000 reads so far
2011-05-20 06:15:52,033 - INFO - Processed 99300000 reads so far
2011-05-20 06:16:03,430 - INFO - Processed 99400000 reads so far
2011-05-20 06:16:09,523 - INFO - Processed 99500000 reads so far
2011-05-20 06:16:19,035 - INFO - Processed 99600000 reads so far
2011-05-20 06:16:29,521 - INFO - Processed 99700000 reads so far
2011-05-20 06:16:37,514 - INFO - Processed 99800000 reads so far
2011-05-20 06:16:44,729 - INFO - Processed 99900000 reads so far
2011-05-20 06:16:51,165 - INFO - Processed 100000000 reads so far
2011-05-20 06:16:57,445 - INFO - Processed 100100000 reads so far
2011-05-20 06:17:05,372 - INFO - Processed 100200000 reads so far
2011-05-20 06:17:12,974 - INFO - Processed 100300000 reads so far
2011-05-20 06:17:20,823 - INFO - Processed 100400000 reads so far
2011-05-20 06:17:29,066 - INFO - Processed 100500000 reads so far
2011-05-20 06:17:35,352 - INFO - Processed 100600000 reads so far
2011-05-20 06:17:46,832 - INFO - Processed 100700000 reads so far
2011-05-20 06:17:54,473 - INFO - Processed 100800000 reads so far
2011-05-20 06:18:04,667 - INFO - Processed 100900000 reads so far
2011-05-20 06:18:13,128 - INFO - Processed 101000000 reads so far
2011-05-20 06:18:23,299 - INFO - Processed 101100000 reads so far
2011-05-20 06:18:31,080 - INFO - Processed 101200000 reads so far
2011-05-20 06:18:38,079 - INFO - Processed 101300000 reads so far
2011-05-20 06:18:44,808 - INFO - Processed 101400000 reads so far
2011-05-20 06:18:52,839 - INFO - Processed 101500000 reads so far
2011-05-20 06:19:01,023 - INFO - Processed 101600000 reads so far
2011-05-20 06:19:09,102 - INFO - Processed 101700000 reads so far
2011-05-20 06:19:16,934 - INFO - Processed 101800000 reads so far
2011-05-20 06:19:23,998 - INFO - Processed 101900000 reads so far
2011-05-20 06:19:32,716 - INFO - Processed 102000000 reads so far
2011-05-20 06:19:40,464 - INFO - Processed 102100000 reads so far
2011-05-20 06:19:46,993 - INFO - Processed 102200000 reads so far
2011-05-20 06:19:56,127 - INFO - Processed 102300000 reads so far
2011-05-20 06:20:03,917 - INFO - Processed 102400000 reads so far
2011-05-20 06:20:14,885 - INFO - Processed 102500000 reads so far
2011-05-20 06:20:22,837 - INFO - Processed 102600000 reads so far
2011-05-20 06:20:30,699 - INFO - Processed 102700000 reads so far
2011-05-20 06:20:40,190 - INFO - Processed 102800000 reads so far
2011-05-20 06:20:47,310 - INFO - Processed 102900000 reads so far
2011-05-20 06:20:54,161 - INFO - Processed 103000000 reads so far
2011-05-20 06:21:00,452 - INFO - Processed 103100000 reads so far
2011-05-20 06:21:09,983 - INFO - Processed 103200000 reads so far
2011-05-20 06:21:16,398 - INFO - Processed 103300000 reads so far
2011-05-20 06:21:24,770 - INFO - Processed 103400000 reads so far
2011-05-20 06:21:32,645 - INFO - Processed 103500000 reads so far
2011-05-20 06:21:39,332 - INFO - Processed 103600000 reads so far
2011-05-20 06:21:47,645 - INFO - Processed 103700000 reads so far
2011-05-20 06:21:55,733 - INFO - Processed 103800000 reads so far
2011-05-20 06:22:03,907 - INFO - Processed 103900000 reads so far
2011-05-20 06:22:11,431 - INFO - Processed 104000000 reads so far
2011-05-20 06:22:18,141 - INFO - Processed 104100000 reads so far
2011-05-20 06:22:26,265 - INFO - Processed 104200000 reads so far
2011-05-20 06:22:33,834 - INFO - Processed 104300000 reads so far
2011-05-20 06:22:42,420 - INFO - Processed 104400000 reads so far
2011-05-20 06:22:51,786 - INFO - Processed 104500000 reads so far
2011-05-20 06:22:59,261 - INFO - Processed 104600000 reads so far
2011-05-20 06:23:09,415 - INFO - Processed 104700000 reads so far
2011-05-20 06:23:19,368 - INFO - Processed 104800000 reads so far
2011-05-20 06:23:29,212 - INFO - Processed 104900000 reads so far
2011-05-20 06:23:37,519 - INFO - Processed 105000000 reads so far
2011-05-20 06:23:48,615 - INFO - Processed 105100000 reads so far
2011-05-20 06:23:58,535 - INFO - Processed 105200000 reads so far
2011-05-20 06:24:05,760 - INFO - Processed 105300000 reads so far
2011-05-20 06:24:13,016 - INFO - Processed 105400000 reads so far
2011-05-20 06:24:13,487 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:102990061-123010061
2011-05-20 06:24:20,627 - INFO - Processed 105500000 reads so far
2011-05-20 06:24:27,583 - INFO - Processed 105600000 reads so far
2011-05-20 06:24:38,575 - INFO - Processed 105700000 reads so far
2011-05-20 06:24:45,311 - INFO - Processed 105800000 reads so far
2011-05-20 06:24:52,612 - INFO - Processed 105900000 reads so far
2011-05-20 06:24:59,657 - INFO - Processed 106000000 reads so far
2011-05-20 06:25:06,803 - INFO - Processed 106100000 reads so far
2011-05-20 06:25:15,416 - INFO - Processed 106200000 reads so far
2011-05-20 06:25:24,798 - INFO - Processed 106300000 reads so far
2011-05-20 06:25:32,939 - INFO - Processed 106400000 reads so far
2011-05-20 06:25:40,299 - INFO - Processed 106500000 reads so far
2011-05-20 06:25:49,451 - INFO - Processed 106600000 reads so far
2011-05-20 06:25:57,379 - INFO - Processed 106700000 reads so far
2011-05-20 06:26:02,218 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:122990131-143010131
2011-05-20 06:26:04,852 - INFO - Processed 106800000 reads so far
2011-05-20 06:26:12,894 - INFO - Processed 106900000 reads so far
2011-05-20 06:26:21,526 - INFO - Processed 107000000 reads so far
2011-05-20 06:26:28,482 - INFO - Processed 107100000 reads so far
2011-05-20 06:26:37,049 - INFO - Processed 107200000 reads so far
2011-05-20 06:26:44,883 - INFO - Processed 107300000 reads so far
2011-05-20 06:26:53,242 - INFO - Processed 107400000 reads so far
2011-05-20 06:27:04,452 - INFO - Processed 107500000 reads so far
2011-05-20 06:27:13,854 - INFO - Processed 107600000 reads so far
2011-05-20 06:27:23,254 - INFO - Processed 107700000 reads so far
2011-05-20 06:27:33,507 - INFO - Processed 107800000 reads so far
2011-05-20 06:27:40,842 - INFO - Processed 107900000 reads so far
2011-05-20 06:27:48,434 - INFO - Processed 108000000 reads so far
2011-05-20 06:27:57,681 - INFO - Processed 108100000 reads so far
2011-05-20 06:28:01,619 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:142990132-163010132
2011-05-20 06:28:05,816 - INFO - Processed 108200000 reads so far
2011-05-20 06:28:15,546 - INFO - Processed 108300000 reads so far
2011-05-20 06:28:23,113 - INFO - Processed 108400000 reads so far
2011-05-20 06:28:31,570 - INFO - Processed 108500000 reads so far
2011-05-20 06:28:40,569 - INFO - Processed 108600000 reads so far
2011-05-20 06:28:48,256 - INFO - Processed 108700000 reads so far
2011-05-20 06:28:57,779 - INFO - Processed 108800000 reads so far
2011-05-20 06:29:07,825 - INFO - Processed 108900000 reads so far
2011-05-20 06:29:15,040 - INFO - Processed 109000000 reads so far
2011-05-20 06:29:23,669 - INFO - Processed 109100000 reads so far
2011-05-20 06:29:33,527 - INFO - Processed 109200000 reads so far
2011-05-20 06:29:43,780 - INFO - Processed 109300000 reads so far
2011-05-20 06:29:51,664 - INFO - Processed 109400000 reads so far
2011-05-20 06:29:59,575 - INFO - Processed 109500000 reads so far
2011-05-20 06:30:01,004 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:162990135-183010135
2011-05-20 06:30:07,586 - INFO - Processed 109600000 reads so far
2011-05-20 06:30:14,528 - INFO - Processed 109700000 reads so far
2011-05-20 06:30:22,629 - INFO - Processed 109800000 reads so far
2011-05-20 06:30:31,881 - INFO - Processed 109900000 reads so far
2011-05-20 06:30:40,255 - INFO - Processed 110000000 reads so far
2011-05-20 06:30:48,974 - INFO - Processed 110100000 reads so far
2011-05-20 06:30:57,236 - INFO - Processed 110200000 reads so far
2011-05-20 06:31:04,612 - INFO - Processed 110300000 reads so far
2011-05-20 06:31:13,875 - INFO - Processed 110400000 reads so far
2011-05-20 06:31:26,019 - INFO - Processed 110500000 reads so far
2011-05-20 06:31:34,245 - INFO - Processed 110600000 reads so far
2011-05-20 06:31:44,683 - INFO - Processed 110700000 reads so far
2011-05-20 06:31:51,726 - INFO - Processed 110800000 reads so far
2011-05-20 06:32:02,709 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:2989994-23009994
2011-05-20 06:32:03,268 - INFO - Processed 110900000 reads so far
2011-05-20 06:32:12,568 - INFO - Processed 111000000 reads so far
2011-05-20 06:32:21,994 - INFO - Processed 111100000 reads so far
2011-05-20 06:32:29,917 - INFO - Processed 111200000 reads so far
2011-05-20 06:32:37,596 - INFO - Processed 111300000 reads so far
2011-05-20 06:32:45,865 - INFO - Processed 111400000 reads so far
2011-05-20 06:32:53,862 - INFO - Processed 111500000 reads so far
2011-05-20 06:33:02,325 - INFO - Processed 111600000 reads so far
2011-05-20 06:33:09,622 - INFO - Processed 111700000 reads so far
2011-05-20 06:33:17,980 - INFO - Processed 111800000 reads so far
2011-05-20 06:33:27,384 - INFO - Processed 111900000 reads so far
2011-05-20 06:33:35,990 - INFO - Processed 112000000 reads so far
2011-05-20 06:33:43,182 - INFO - Processed 112100000 reads so far
2011-05-20 06:33:50,757 - INFO - Processed 112200000 reads so far
2011-05-20 06:33:54,625 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:22990007-43010007
2011-05-20 06:33:58,775 - INFO - Processed 112300000 reads so far
2011-05-20 06:34:07,185 - INFO - Processed 112400000 reads so far
2011-05-20 06:34:13,919 - INFO - Processed 112500000 reads so far
2011-05-20 06:34:20,698 - INFO - Processed 112600000 reads so far
2011-05-20 06:34:27,506 - INFO - Processed 112700000 reads so far
2011-05-20 06:34:37,091 - INFO - Processed 112800000 reads so far
2011-05-20 06:34:46,332 - INFO - Processed 112900000 reads so far
2011-05-20 06:34:56,625 - INFO - Processed 113000000 reads so far
2011-05-20 06:35:06,759 - INFO - Processed 113100000 reads so far
2011-05-20 06:35:16,024 - INFO - Processed 113200000 reads so far
2011-05-20 06:35:24,419 - INFO - Processed 113300000 reads so far
2011-05-20 06:35:32,077 - INFO - Processed 113400000 reads so far
2011-05-20 06:35:42,143 - INFO - Processed 113500000 reads so far
2011-05-20 06:35:56,771 - INFO - Processed 113600000 reads so far
2011-05-20 06:35:59,262 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:42990009-63010009
2011-05-20 06:36:05,103 - INFO - Processed 113700000 reads so far
2011-05-20 06:36:15,652 - INFO - Processed 113800000 reads so far
2011-05-20 06:36:23,810 - INFO - Processed 113900000 reads so far
2011-05-20 06:36:33,105 - INFO - Processed 114000000 reads so far
2011-05-20 06:36:42,557 - INFO - Processed 114100000 reads so far
2011-05-20 06:36:51,669 - INFO - Processed 114200000 reads so far
2011-05-20 06:36:59,369 - INFO - Processed 114300000 reads so far
2011-05-20 06:37:10,559 - INFO - Processed 114400000 reads so far
2011-05-20 06:37:22,143 - INFO - Processed 114500000 reads so far
2011-05-20 06:37:34,980 - INFO - Processed 114600000 reads so far
2011-05-20 06:37:43,002 - INFO - Processed 114700000 reads so far
2011-05-20 06:37:53,203 - INFO - Processed 114800000 reads so far
2011-05-20 06:38:03,755 - INFO - Processed 114900000 reads so far
2011-05-20 06:38:08,875 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:62990039-83010039
2011-05-20 06:38:14,708 - INFO - Processed 115000000 reads so far
2011-05-20 06:38:23,829 - INFO - Processed 115100000 reads so far
2011-05-20 06:38:34,049 - INFO - Processed 115200000 reads so far
2011-05-20 06:38:45,397 - INFO - Processed 115300000 reads so far
2011-05-20 06:38:53,645 - INFO - Processed 115400000 reads so far
2011-05-20 06:39:04,763 - INFO - Processed 115500000 reads so far
2011-05-20 06:39:15,822 - INFO - Processed 115600000 reads so far
2011-05-20 06:39:24,596 - INFO - Processed 115700000 reads so far
2011-05-20 06:39:33,497 - INFO - Processed 115800000 reads so far
2011-05-20 06:39:42,800 - INFO - Processed 115900000 reads so far
2011-05-20 06:39:50,273 - INFO - Processed 116000000 reads so far
2011-05-20 06:40:00,888 - INFO - Processed 116100000 reads so far
2011-05-20 06:40:12,412 - INFO - Processed 116200000 reads so far
2011-05-20 06:40:20,666 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:82990047-103010047
2011-05-20 06:40:23,051 - INFO - Processed 116300000 reads so far
2011-05-20 06:40:33,406 - INFO - Processed 116400000 reads so far
2011-05-20 06:40:43,870 - INFO - Processed 116500000 reads so far
2011-05-20 06:40:54,255 - INFO - Processed 116600000 reads so far
2011-05-20 06:41:07,645 - INFO - Processed 116700000 reads so far
2011-05-20 06:41:17,259 - INFO - Processed 116800000 reads so far
2011-05-20 06:41:24,860 - INFO - Processed 116900000 reads so far
2011-05-20 06:41:33,951 - INFO - Processed 117000000 reads so far
2011-05-20 06:41:43,508 - INFO - Processed 117100000 reads so far
2011-05-20 06:41:50,730 - INFO - Processed 117200000 reads so far
2011-05-20 06:41:58,350 - INFO - Processed 117300000 reads so far
2011-05-20 06:42:05,937 - INFO - Processed 117400000 reads so far
2011-05-20 06:42:14,515 - INFO - Processed 117500000 reads so far
2011-05-20 06:42:22,049 - INFO - Processed 117600000 reads so far
2011-05-20 06:42:24,681 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:102990048-123010048
2011-05-20 06:42:29,134 - INFO - Processed 117700000 reads so far
2011-05-20 06:42:36,297 - INFO - Processed 117800000 reads so far
2011-05-20 06:42:46,493 - INFO - Processed 117900000 reads so far
2011-05-20 06:42:55,602 - INFO - Processed 118000000 reads so far
2011-05-20 06:43:05,520 - INFO - Processed 118100000 reads so far
2011-05-20 06:43:14,009 - INFO - Processed 118200000 reads so far
2011-05-20 06:43:24,511 - INFO - Processed 118300000 reads so far
2011-05-20 06:43:35,994 - INFO - Processed 118400000 reads so far
2011-05-20 06:43:45,818 - INFO - Processed 118500000 reads so far
2011-05-20 06:43:56,081 - INFO - Processed 118600000 reads so far
2011-05-20 06:44:05,859 - INFO - Processed 118700000 reads so far
2011-05-20 06:44:15,047 - INFO - Processed 118800000 reads so far
2011-05-20 06:44:24,702 - INFO - Processed 118900000 reads so far
2011-05-20 06:44:33,824 - INFO - Processed 119000000 reads so far
2011-05-20 06:44:35,518 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:122990062-143010062
2011-05-20 06:44:45,195 - INFO - Processed 119100000 reads so far
2011-05-20 06:44:53,830 - INFO - Processed 119200000 reads so far
2011-05-20 06:45:02,170 - INFO - Processed 119300000 reads so far
2011-05-20 06:45:10,806 - INFO - Processed 119400000 reads so far
2011-05-20 06:45:18,905 - INFO - Processed 119500000 reads so far
2011-05-20 06:45:31,142 - INFO - Processed 119600000 reads so far
2011-05-20 06:45:40,080 - INFO - Processed 119700000 reads so far
2011-05-20 06:45:49,451 - INFO - Processed 119800000 reads so far
2011-05-20 06:45:57,392 - INFO - Processed 119900000 reads so far
2011-05-20 06:46:07,713 - INFO - Processed 120000000 reads so far
2011-05-20 06:46:16,345 - INFO - Processed 120100000 reads so far
2011-05-20 06:46:26,589 - INFO - Processed 120200000 reads so far
2011-05-20 06:46:38,984 - INFO - Processed 120300000 reads so far
2011-05-20 06:46:47,088 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:142990088-163010088
2011-05-20 06:46:49,891 - INFO - Processed 120400000 reads so far
2011-05-20 06:47:00,881 - INFO - Processed 120500000 reads so far
2011-05-20 06:47:11,848 - INFO - Processed 120600000 reads so far
2011-05-20 06:47:22,720 - INFO - Processed 120700000 reads so far
2011-05-20 06:47:35,097 - INFO - Processed 120800000 reads so far
2011-05-20 06:47:45,973 - INFO - Processed 120900000 reads so far
2011-05-20 06:47:58,000 - INFO - Processed 121000000 reads so far
2011-05-20 06:48:08,697 - INFO - Processed 121100000 reads so far
2011-05-20 06:48:19,641 - INFO - Processed 121200000 reads so far
2011-05-20 06:48:29,043 - INFO - Processed 121300000 reads so far
2011-05-20 06:48:41,008 - INFO - Processed 121400000 reads so far
2011-05-20 06:48:52,124 - INFO - Processed 121500000 reads so far
2011-05-20 06:48:56,034 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3_random:0-20010062
2011-05-20 06:48:56,188 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:2989983-23009983
2011-05-20 06:49:02,604 - INFO - Processed 121600000 reads so far
2011-05-20 06:49:10,822 - INFO - Processed 121700000 reads so far
2011-05-20 06:49:20,046 - INFO - Processed 121800000 reads so far
2011-05-20 06:49:29,394 - INFO - Processed 121900000 reads so far
2011-05-20 06:49:40,929 - INFO - Processed 122000000 reads so far
2011-05-20 06:49:50,637 - INFO - Processed 122100000 reads so far
2011-05-20 06:50:00,374 - INFO - Processed 122200000 reads so far
2011-05-20 06:50:10,212 - INFO - Processed 122300000 reads so far
2011-05-20 06:50:17,979 - INFO - Processed 122400000 reads so far
2011-05-20 06:50:28,280 - INFO - Processed 122500000 reads so far
2011-05-20 06:50:38,460 - INFO - Processed 122600000 reads so far
2011-05-20 06:50:46,634 - INFO - Processed 122700000 reads so far
2011-05-20 06:50:56,143 - INFO - Processed 122800000 reads so far
2011-05-20 06:51:03,836 - INFO - Processed 122900000 reads so far
2011-05-20 06:51:06,835 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:22989991-43009991
2011-05-20 06:51:13,839 - INFO - Processed 123000000 reads so far
2011-05-20 06:51:23,262 - INFO - Processed 123100000 reads so far
2011-05-20 06:51:34,740 - INFO - Processed 123200000 reads so far
2011-05-20 06:51:44,049 - INFO - Processed 123300000 reads so far
2011-05-20 06:51:54,616 - INFO - Processed 123400000 reads so far
2011-05-20 06:52:04,324 - INFO - Processed 123500000 reads so far
2011-05-20 06:52:12,468 - INFO - Processed 123600000 reads so far
2011-05-20 06:52:23,151 - INFO - Processed 123700000 reads so far
2011-05-20 06:52:33,883 - INFO - Processed 123800000 reads so far
2011-05-20 06:52:45,958 - INFO - Processed 123900000 reads so far
2011-05-20 06:52:57,073 - INFO - Processed 124000000 reads so far
2011-05-20 06:53:06,523 - INFO - Processed 124100000 reads so far
2011-05-20 06:53:16,219 - INFO - Processed 124200000 reads so far
2011-05-20 06:53:16,968 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:42989994-63009994
2011-05-20 06:53:23,579 - INFO - Processed 124300000 reads so far
2011-05-20 06:53:31,647 - INFO - Processed 124400000 reads so far
2011-05-20 06:53:42,188 - INFO - Processed 124500000 reads so far
2011-05-20 06:53:49,890 - INFO - Processed 124600000 reads so far
2011-05-20 06:54:01,018 - INFO - Processed 124700000 reads so far
2011-05-20 06:54:08,354 - INFO - Processed 124800000 reads so far
2011-05-20 06:54:17,165 - INFO - Processed 124900000 reads so far
2011-05-20 06:54:23,931 - INFO - Processed 125000000 reads so far
2011-05-20 06:54:31,657 - INFO - Processed 125100000 reads so far
2011-05-20 06:54:39,414 - INFO - Processed 125200000 reads so far
2011-05-20 06:54:47,837 - INFO - Processed 125300000 reads so far
2011-05-20 06:54:57,286 - INFO - Processed 125400000 reads so far
2011-05-20 06:55:03,961 - INFO - Processed 125500000 reads so far
2011-05-20 06:55:10,086 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:62990001-83010001
2011-05-20 06:55:11,409 - INFO - Processed 125600000 reads so far
2011-05-20 06:55:19,713 - INFO - Processed 125700000 reads so far
2011-05-20 06:55:26,766 - INFO - Processed 125800000 reads so far
2011-05-20 06:55:34,235 - INFO - Processed 125900000 reads so far
2011-05-20 06:55:41,486 - INFO - Processed 126000000 reads so far
2011-05-20 06:55:48,072 - INFO - Processed 126100000 reads so far
2011-05-20 06:55:56,847 - INFO - Processed 126200000 reads so far
2011-05-20 06:56:05,954 - INFO - Processed 126300000 reads so far
2011-05-20 06:56:13,715 - INFO - Processed 126400000 reads so far
2011-05-20 06:56:23,655 - INFO - Processed 126500000 reads so far
2011-05-20 06:56:31,175 - INFO - Processed 126600000 reads so far
2011-05-20 06:56:39,364 - INFO - Processed 126700000 reads so far
2011-05-20 06:56:46,669 - INFO - Processed 126800000 reads so far
2011-05-20 06:56:53,361 - INFO - Processed 126900000 reads so far
2011-05-20 06:56:56,195 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:82990007-103010007
2011-05-20 06:57:00,203 - INFO - Processed 127000000 reads so far
2011-05-20 06:57:10,966 - INFO - Processed 127100000 reads so far
2011-05-20 06:57:21,725 - INFO - Processed 127200000 reads so far
2011-05-20 06:57:28,730 - INFO - Processed 127300000 reads so far
2011-05-20 06:57:36,756 - INFO - Processed 127400000 reads so far
2011-05-20 06:57:45,670 - INFO - Processed 127500000 reads so far
2011-05-20 06:57:52,410 - INFO - Processed 127600000 reads so far
2011-05-20 06:58:00,573 - INFO - Processed 127700000 reads so far
2011-05-20 06:58:10,367 - INFO - Processed 127800000 reads so far
2011-05-20 06:58:22,479 - INFO - Processed 127900000 reads so far
2011-05-20 06:58:30,366 - INFO - Processed 128000000 reads so far
2011-05-20 06:58:41,400 - INFO - Processed 128100000 reads so far
2011-05-20 06:58:49,225 - INFO - Processed 128200000 reads so far
2011-05-20 06:59:01,182 - INFO - Processed 128300000 reads so far
2011-05-20 06:59:03,835 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:102990014-123010014
2011-05-20 06:59:11,511 - INFO - Processed 128400000 reads so far
2011-05-20 06:59:19,020 - INFO - Processed 128500000 reads so far
2011-05-20 06:59:27,883 - INFO - Processed 128600000 reads so far
2011-05-20 06:59:39,975 - INFO - Processed 128700000 reads so far
2011-05-20 06:59:49,307 - INFO - Processed 128800000 reads so far
2011-05-20 06:59:57,175 - INFO - Processed 128900000 reads so far
2011-05-20 07:00:09,081 - INFO - Processed 129000000 reads so far
2011-05-20 07:00:17,935 - INFO - Processed 129100000 reads so far
2011-05-20 07:00:29,065 - INFO - Processed 129200000 reads so far
2011-05-20 07:00:40,404 - INFO - Processed 129300000 reads so far
2011-05-20 07:00:51,623 - INFO - Processed 129400000 reads so far
2011-05-20 07:01:03,447 - INFO - Processed 129500000 reads so far
2011-05-20 07:01:11,224 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:122990021-143010021
2011-05-20 07:01:14,879 - INFO - Processed 129600000 reads so far
2011-05-20 07:01:24,494 - INFO - Processed 129700000 reads so far
2011-05-20 07:01:33,411 - INFO - Processed 129800000 reads so far
2011-05-20 07:01:42,812 - INFO - Processed 129900000 reads so far
2011-05-20 07:01:50,955 - INFO - Processed 130000000 reads so far
2011-05-20 07:02:00,969 - INFO - Processed 130100000 reads so far
2011-05-20 07:02:08,451 - INFO - Processed 130200000 reads so far
2011-05-20 07:02:19,333 - INFO - Processed 130300000 reads so far
2011-05-20 07:02:28,549 - INFO - Processed 130400000 reads so far
2011-05-20 07:02:35,856 - INFO - Processed 130500000 reads so far
2011-05-20 07:02:43,532 - INFO - Processed 130600000 reads so far
2011-05-20 07:02:51,591 - INFO - Processed 130700000 reads so far
2011-05-20 07:03:03,730 - INFO - Processed 130800000 reads so far
2011-05-20 07:03:08,736 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:142990034-163010034
2011-05-20 07:03:11,389 - INFO - Processed 130900000 reads so far
2011-05-20 07:03:21,496 - INFO - Processed 131000000 reads so far
2011-05-20 07:03:28,229 - INFO - Processed 131100000 reads so far
2011-05-20 07:03:36,577 - INFO - Processed 131200000 reads so far
2011-05-20 07:03:44,004 - INFO - Processed 131300000 reads so far
2011-05-20 07:03:52,093 - INFO - Processed 131400000 reads so far
2011-05-20 07:04:01,314 - INFO - Processed 131500000 reads so far
2011-05-20 07:04:09,929 - INFO - Processed 131600000 reads so far
2011-05-20 07:04:18,380 - INFO - Processed 131700000 reads so far
2011-05-20 07:04:25,070 - INFO - Processed 131800000 reads so far
2011-05-20 07:04:33,543 - INFO - Processed 131900000 reads so far
2011-05-20 07:04:37,819 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4_random:0-20010020
2011-05-20 07:04:38,721 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:2990008-23010008
2011-05-20 07:04:41,879 - INFO - Processed 132000000 reads so far
2011-05-20 07:04:49,387 - INFO - Processed 132100000 reads so far
2011-05-20 07:04:56,221 - INFO - Processed 132200000 reads so far
2011-05-20 07:05:03,336 - INFO - Processed 132300000 reads so far
2011-05-20 07:05:11,551 - INFO - Processed 132400000 reads so far
2011-05-20 07:05:19,962 - INFO - Processed 132500000 reads so far
2011-05-20 07:05:28,169 - INFO - Processed 132600000 reads so far
2011-05-20 07:05:35,307 - INFO - Processed 132700000 reads so far
2011-05-20 07:05:43,441 - INFO - Processed 132800000 reads so far
2011-05-20 07:05:52,478 - INFO - Processed 132900000 reads so far
2011-05-20 07:06:00,170 - INFO - Processed 133000000 reads so far
2011-05-20 07:06:07,210 - INFO - Processed 133100000 reads so far
2011-05-20 07:06:14,320 - INFO - Processed 133200000 reads so far
2011-05-20 07:06:21,758 - INFO - Processed 133300000 reads so far
2011-05-20 07:06:26,260 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:22990010-43010010
2011-05-20 07:06:31,073 - INFO - Processed 133400000 reads so far
2011-05-20 07:06:38,308 - INFO - Processed 133500000 reads so far
2011-05-20 07:06:46,090 - INFO - Processed 133600000 reads so far
2011-05-20 07:06:54,386 - INFO - Processed 133700000 reads so far
2011-05-20 07:07:02,547 - INFO - Processed 133800000 reads so far
2011-05-20 07:07:11,269 - INFO - Processed 133900000 reads so far
2011-05-20 07:07:21,862 - INFO - Processed 134000000 reads so far
2011-05-20 07:07:28,690 - INFO - Processed 134100000 reads so far
2011-05-20 07:07:35,778 - INFO - Processed 134200000 reads so far
2011-05-20 07:07:43,835 - INFO - Processed 134300000 reads so far
2011-05-20 07:07:56,048 - INFO - Processed 134400000 reads so far
2011-05-20 07:08:06,792 - INFO - Processed 134500000 reads so far
2011-05-20 07:08:17,668 - INFO - Processed 134600000 reads so far
2011-05-20 07:08:27,299 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:42990020-63010020
2011-05-20 07:08:28,915 - INFO - Processed 134700000 reads so far
2011-05-20 07:08:39,797 - INFO - Processed 134800000 reads so far
2011-05-20 07:08:51,160 - INFO - Processed 134900000 reads so far
2011-05-20 07:08:59,832 - INFO - Processed 135000000 reads so far
2011-05-20 07:09:07,242 - INFO - Processed 135100000 reads so far
2011-05-20 07:09:15,885 - INFO - Processed 135200000 reads so far
2011-05-20 07:09:22,601 - INFO - Processed 135300000 reads so far
2011-05-20 07:09:29,368 - INFO - Processed 135400000 reads so far
2011-05-20 07:09:37,831 - INFO - Processed 135500000 reads so far
2011-05-20 07:09:46,558 - INFO - Processed 135600000 reads so far
2011-05-20 07:09:55,266 - INFO - Processed 135700000 reads so far
2011-05-20 07:10:14,968 - INFO - Processed 135800000 reads so far
2011-05-20 07:10:29,996 - INFO - Processed 135900000 reads so far
2011-05-20 07:10:40,391 - INFO - Processed 136000000 reads so far
2011-05-20 07:10:40,615 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:62990032-83010032
2011-05-20 07:11:06,435 - INFO - Processed 136100000 reads so far
2011-05-20 07:11:18,487 - INFO - Processed 136200000 reads so far
2011-05-20 07:11:29,625 - INFO - Processed 136300000 reads so far
2011-05-20 07:11:42,866 - INFO - Processed 136400000 reads so far
2011-05-20 07:11:55,206 - INFO - Processed 136500000 reads so far
2011-05-20 07:12:06,325 - INFO - Processed 136600000 reads so far
2011-05-20 07:12:21,561 - INFO - Processed 136700000 reads so far
2011-05-20 07:12:32,448 - INFO - Processed 136800000 reads so far
2011-05-20 07:12:52,959 - INFO - Processed 136900000 reads so far
2011-05-20 07:13:03,968 - INFO - Processed 137000000 reads so far
2011-05-20 07:13:18,118 - INFO - Processed 137100000 reads so far
2011-05-20 07:13:29,135 - INFO - Processed 137200000 reads so far
2011-05-20 07:13:43,527 - INFO - Processed 137300000 reads so far
2011-05-20 07:13:45,617 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:82990040-103010040
2011-05-20 07:13:52,330 - INFO - Processed 137400000 reads so far
2011-05-20 07:14:00,281 - INFO - Processed 137500000 reads so far
2011-05-20 07:14:09,457 - INFO - Processed 137600000 reads so far
2011-05-20 07:14:18,072 - INFO - Processed 137700000 reads so far
2011-05-20 07:14:26,480 - INFO - Processed 137800000 reads so far
2011-05-20 07:14:36,341 - INFO - Processed 137900000 reads so far
2011-05-20 07:14:45,285 - INFO - Processed 138000000 reads so far
2011-05-20 07:14:54,546 - INFO - Processed 138100000 reads so far
2011-05-20 07:15:03,924 - INFO - Processed 138200000 reads so far
2011-05-20 07:15:11,762 - INFO - Processed 138300000 reads so far
2011-05-20 07:15:20,162 - INFO - Processed 138400000 reads so far
2011-05-20 07:15:29,435 - INFO - Processed 138500000 reads so far
2011-05-20 07:15:38,107 - INFO - Processed 138600000 reads so far
2011-05-20 07:15:40,306 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:102990059-123010059
2011-05-20 07:15:49,337 - INFO - Processed 138700000 reads so far
2011-05-20 07:15:59,313 - INFO - Processed 138800000 reads so far
2011-05-20 07:16:07,694 - INFO - Processed 138900000 reads so far
2011-05-20 07:16:19,177 - INFO - Processed 139000000 reads so far
2011-05-20 07:16:28,628 - INFO - Processed 139100000 reads so far
2011-05-20 07:16:40,122 - INFO - Processed 139200000 reads so far
2011-05-20 07:16:48,663 - INFO - Processed 139300000 reads so far
2011-05-20 07:16:58,645 - INFO - Processed 139400000 reads so far
2011-05-20 07:17:09,254 - INFO - Processed 139500000 reads so far
2011-05-20 07:17:17,300 - INFO - Processed 139600000 reads so far
2011-05-20 07:17:27,802 - INFO - Processed 139700000 reads so far
2011-05-20 07:17:35,975 - INFO - Processed 139800000 reads so far
2011-05-20 07:17:45,384 - INFO - Processed 139900000 reads so far
2011-05-20 07:17:51,842 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:122990077-143010077
2011-05-20 07:17:55,812 - INFO - Processed 140000000 reads so far
2011-05-20 07:18:05,114 - INFO - Processed 140100000 reads so far
2011-05-20 07:18:15,479 - INFO - Processed 140200000 reads so far
2011-05-20 07:18:23,900 - INFO - Processed 140300000 reads so far
2011-05-20 07:18:32,214 - INFO - Processed 140400000 reads so far
2011-05-20 07:18:42,342 - INFO - Processed 140500000 reads so far
2011-05-20 07:18:50,214 - INFO - Processed 140600000 reads so far
2011-05-20 07:19:00,174 - INFO - Processed 140700000 reads so far
2011-05-20 07:19:14,579 - INFO - Processed 140800000 reads so far
2011-05-20 07:19:25,576 - INFO - Processed 140900000 reads so far
2011-05-20 07:19:36,566 - INFO - Processed 141000000 reads so far
2011-05-20 07:19:49,485 - INFO - Processed 141100000 reads so far
2011-05-20 07:20:00,391 - INFO - Processed 141200000 reads so far
2011-05-20 07:20:11,893 - INFO - Processed 141300000 reads so far
2011-05-20 07:20:13,142 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:142990078-163010078
2011-05-20 07:20:23,652 - INFO - Processed 141400000 reads so far
2011-05-20 07:20:33,839 - INFO - Processed 141500000 reads so far
2011-05-20 07:20:45,094 - INFO - Processed 141600000 reads so far
2011-05-20 07:20:57,840 - INFO - Processed 141700000 reads so far
2011-05-20 07:21:09,310 - INFO - Processed 141800000 reads so far
2011-05-20 07:21:20,351 - INFO - Processed 141900000 reads so far
2011-05-20 07:21:25,617 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5_random:0-20010060
2011-05-20 07:21:26,267 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:2989980-23009980
2011-05-20 07:21:31,188 - INFO - Processed 142000000 reads so far
2011-05-20 07:21:43,612 - INFO - Processed 142100000 reads so far
2011-05-20 07:21:55,586 - INFO - Processed 142200000 reads so far
2011-05-20 07:22:08,418 - INFO - Processed 142300000 reads so far
2011-05-20 07:22:20,025 - INFO - Processed 142400000 reads so far
2011-05-20 07:22:30,915 - INFO - Processed 142500000 reads so far
2011-05-20 07:22:42,996 - INFO - Processed 142600000 reads so far
2011-05-20 07:22:53,885 - INFO - Processed 142700000 reads so far
2011-05-20 07:23:02,502 - INFO - Processed 142800000 reads so far
2011-05-20 07:23:11,546 - INFO - Processed 142900000 reads so far
2011-05-20 07:23:22,582 - INFO - Processed 143000000 reads so far
2011-05-20 07:23:32,465 - INFO - Processed 143100000 reads so far
2011-05-20 07:23:40,475 - INFO - Processed 143200000 reads so far
2011-05-20 07:23:48,575 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:22989985-43009985
2011-05-20 07:23:48,976 - INFO - Processed 143300000 reads so far
2011-05-20 07:23:58,489 - INFO - Processed 143400000 reads so far
2011-05-20 07:24:07,579 - INFO - Processed 143500000 reads so far
2011-05-20 07:24:16,975 - INFO - Processed 143600000 reads so far
2011-05-20 07:24:26,164 - INFO - Processed 143700000 reads so far
2011-05-20 07:24:34,969 - INFO - Processed 143800000 reads so far
2011-05-20 07:24:44,641 - INFO - Processed 143900000 reads so far
2011-05-20 07:24:55,164 - INFO - Processed 144000000 reads so far
2011-05-20 07:25:04,268 - INFO - Processed 144100000 reads so far
2011-05-20 07:25:13,099 - INFO - Processed 144200000 reads so far
2011-05-20 07:25:21,778 - INFO - Processed 144300000 reads so far
2011-05-20 07:25:29,995 - INFO - Processed 144400000 reads so far
2011-05-20 07:25:41,139 - INFO - Processed 144500000 reads so far
2011-05-20 07:25:49,767 - INFO - Processed 144600000 reads so far
2011-05-20 07:25:55,797 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:42990015-63010015
2011-05-20 07:25:59,004 - INFO - Processed 144700000 reads so far
2011-05-20 07:26:08,388 - INFO - Processed 144800000 reads so far
2011-05-20 07:26:17,868 - INFO - Processed 144900000 reads so far
2011-05-20 07:26:27,308 - INFO - Processed 145000000 reads so far
2011-05-20 07:26:36,235 - INFO - Processed 145100000 reads so far
2011-05-20 07:26:45,058 - INFO - Processed 145200000 reads so far
2011-05-20 07:26:55,367 - INFO - Processed 145300000 reads so far
2011-05-20 07:27:03,789 - INFO - Processed 145400000 reads so far
2011-05-20 07:27:12,736 - INFO - Processed 145500000 reads so far
2011-05-20 07:27:21,343 - INFO - Processed 145600000 reads so far
2011-05-20 07:27:31,665 - INFO - Processed 145700000 reads so far
2011-05-20 07:27:40,324 - INFO - Processed 145800000 reads so far
2011-05-20 07:27:49,707 - INFO - Processed 145900000 reads so far
2011-05-20 07:27:57,748 - INFO - Processed 146000000 reads so far
2011-05-20 07:28:05,072 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:62990029-83010029
2011-05-20 07:28:09,108 - INFO - Processed 146100000 reads so far
2011-05-20 07:28:17,758 - INFO - Processed 146200000 reads so far
2011-05-20 07:28:26,357 - INFO - Processed 146300000 reads so far
2011-05-20 07:28:34,641 - INFO - Processed 146400000 reads so far
2011-05-20 07:28:43,218 - INFO - Processed 146500000 reads so far
2011-05-20 07:28:51,898 - INFO - Processed 146600000 reads so far
2011-05-20 07:29:01,900 - INFO - Processed 146700000 reads so far
2011-05-20 07:29:11,560 - INFO - Processed 146800000 reads so far
2011-05-20 07:29:19,821 - INFO - Processed 146900000 reads so far
2011-05-20 07:29:28,621 - INFO - Processed 147000000 reads so far
2011-05-20 07:29:37,470 - INFO - Processed 147100000 reads so far
2011-05-20 07:29:47,509 - INFO - Processed 147200000 reads so far
2011-05-20 07:29:55,137 - INFO - Processed 147300000 reads so far
2011-05-20 07:30:05,052 - INFO - Processed 147400000 reads so far
2011-05-20 07:30:06,347 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:82990082-103010082
2011-05-20 07:30:16,584 - INFO - Processed 147500000 reads so far
2011-05-20 07:30:26,207 - INFO - Processed 147600000 reads so far
2011-05-20 07:30:34,974 - INFO - Processed 147700000 reads so far
2011-05-20 07:30:44,567 - INFO - Processed 147800000 reads so far
2011-05-20 07:30:53,756 - INFO - Processed 147900000 reads so far
2011-05-20 07:31:02,445 - INFO - Processed 148000000 reads so far
2011-05-20 07:31:10,465 - INFO - Processed 148100000 reads so far
2011-05-20 07:31:23,811 - INFO - Processed 148200000 reads so far
2011-05-20 07:31:37,251 - INFO - Processed 148300000 reads so far
2011-05-20 07:31:46,821 - INFO - Processed 148400000 reads so far
2011-05-20 07:31:54,875 - INFO - Processed 148500000 reads so far
2011-05-20 07:32:03,990 - INFO - Processed 148600000 reads so far
2011-05-20 07:32:14,693 - INFO - Processed 148700000 reads so far
2011-05-20 07:32:24,235 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:102990087-123010087
2011-05-20 07:32:24,629 - INFO - Processed 148800000 reads so far
2011-05-20 07:32:33,048 - INFO - Processed 148900000 reads so far
2011-05-20 07:32:41,395 - INFO - Processed 149000000 reads so far
2011-05-20 07:32:48,708 - INFO - Processed 149100000 reads so far
2011-05-20 07:32:56,377 - INFO - Processed 149200000 reads so far
2011-05-20 07:33:03,833 - INFO - Processed 149300000 reads so far
2011-05-20 07:33:12,211 - INFO - Processed 149400000 reads so far
2011-05-20 07:33:20,861 - INFO - Processed 149500000 reads so far
2011-05-20 07:33:29,026 - INFO - Processed 149600000 reads so far
2011-05-20 07:33:37,041 - INFO - Processed 149700000 reads so far
2011-05-20 07:33:44,907 - INFO - Processed 149800000 reads so far
2011-05-20 07:33:51,702 - INFO - Processed 149900000 reads so far
2011-05-20 07:33:58,900 - INFO - Processed 150000000 reads so far
2011-05-20 07:34:06,699 - INFO - Processed 150100000 reads so far
2011-05-20 07:34:15,335 - INFO - Processed 150200000 reads so far
2011-05-20 07:34:23,258 - INFO - Processed 150300000 reads so far
2011-05-20 07:34:33,021 - INFO - Processed 150400000 reads so far
2011-05-20 07:34:41,225 - INFO - Processed 150500000 reads so far
2011-05-20 07:34:50,953 - INFO - Processed 150600000 reads so far
2011-05-20 07:34:59,852 - INFO - Processed 150700000 reads so far
2011-05-20 07:35:15,383 - INFO - Processed 150800000 reads so far
2011-05-20 07:35:28,138 - INFO - Processed 150900000 reads so far
2011-05-20 07:35:38,030 - INFO - Processed 151000000 reads so far
2011-05-20 07:35:51,213 - INFO - Processed 151100000 reads so far
2011-05-20 07:35:59,234 - INFO - Processed 151200000 reads so far
2011-05-20 07:36:07,645 - INFO - Processed 151300000 reads so far
2011-05-20 07:36:17,939 - INFO - Processed 151400000 reads so far
2011-05-20 07:36:26,550 - INFO - Processed 151500000 reads so far
2011-05-20 07:36:33,514 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:122990108-143010108
2011-05-20 07:36:35,458 - INFO - Processed 151600000 reads so far
2011-05-20 07:36:45,063 - INFO - Processed 151700000 reads so far
2011-05-20 07:36:53,181 - INFO - Processed 151800000 reads so far
2011-05-20 07:37:01,316 - INFO - Processed 151900000 reads so far
2011-05-20 07:37:10,035 - INFO - Processed 152000000 reads so far
2011-05-20 07:37:19,649 - INFO - Processed 152100000 reads so far
2011-05-20 07:37:29,170 - INFO - Processed 152200000 reads so far
2011-05-20 07:37:38,034 - INFO - Processed 152300000 reads so far
2011-05-20 07:37:48,057 - INFO - Processed 152400000 reads so far
2011-05-20 07:37:57,385 - INFO - Processed 152500000 reads so far
2011-05-20 07:38:06,277 - INFO - Processed 152600000 reads so far
2011-05-20 07:38:14,455 - INFO - Processed 152700000 reads so far
2011-05-20 07:38:24,759 - INFO - Processed 152800000 reads so far
2011-05-20 07:38:34,916 - INFO - Processed 152900000 reads so far
2011-05-20 07:38:37,293 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:142990118-163010118
2011-05-20 07:38:46,454 - INFO - Processed 153000000 reads so far
2011-05-20 07:38:55,028 - INFO - Processed 153100000 reads so far
2011-05-20 07:39:07,582 - INFO - Processed 153200000 reads so far
2011-05-20 07:39:18,641 - INFO - Processed 153300000 reads so far
2011-05-20 07:39:26,203 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:2990003-23010003
2011-05-20 07:39:28,455 - INFO - Processed 153400000 reads so far
2011-05-20 07:39:38,411 - INFO - Processed 153500000 reads so far
2011-05-20 07:39:48,982 - INFO - Processed 153600000 reads so far
2011-05-20 07:39:59,482 - INFO - Processed 153700000 reads so far
2011-05-20 07:40:07,817 - INFO - Processed 153800000 reads so far
2011-05-20 07:40:18,563 - INFO - Processed 153900000 reads so far
2011-05-20 07:40:27,726 - INFO - Processed 154000000 reads so far
2011-05-20 07:40:37,216 - INFO - Processed 154100000 reads so far
2011-05-20 07:40:47,532 - INFO - Processed 154200000 reads so far
2011-05-20 07:40:56,293 - INFO - Processed 154300000 reads so far
2011-05-20 07:41:06,543 - INFO - Processed 154400000 reads so far
2011-05-20 07:41:15,450 - INFO - Processed 154500000 reads so far
2011-05-20 07:41:21,840 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:22990115-43010115
2011-05-20 07:41:24,351 - INFO - Processed 154600000 reads so far
2011-05-20 07:41:33,724 - INFO - Processed 154700000 reads so far
2011-05-20 07:41:42,096 - INFO - Processed 154800000 reads so far
2011-05-20 07:41:50,580 - INFO - Processed 154900000 reads so far
2011-05-20 07:42:01,302 - INFO - Processed 155000000 reads so far
2011-05-20 07:42:09,949 - INFO - Processed 155100000 reads so far
2011-05-20 07:42:18,715 - INFO - Processed 155200000 reads so far
2011-05-20 07:42:27,842 - INFO - Processed 155300000 reads so far
2011-05-20 07:42:36,012 - INFO - Processed 155400000 reads so far
2011-05-20 07:42:45,309 - INFO - Processed 155500000 reads so far
2011-05-20 07:42:51,530 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:46351869-66371869
2011-05-20 07:42:54,007 - INFO - Processed 155600000 reads so far
2011-05-20 07:43:02,873 - INFO - Processed 155700000 reads so far
2011-05-20 07:43:11,043 - INFO - Processed 155800000 reads so far
2011-05-20 07:43:19,660 - INFO - Processed 155900000 reads so far
2011-05-20 07:43:29,448 - INFO - Processed 156000000 reads so far
2011-05-20 07:43:38,013 - INFO - Processed 156100000 reads so far
2011-05-20 07:43:46,345 - INFO - Processed 156200000 reads so far
2011-05-20 07:43:54,920 - INFO - Processed 156300000 reads so far
2011-05-20 07:44:03,430 - INFO - Processed 156400000 reads so far
2011-05-20 07:44:13,622 - INFO - Processed 156500000 reads so far
2011-05-20 07:44:22,080 - INFO - Processed 156600000 reads so far
2011-05-20 07:44:30,445 - INFO - Processed 156700000 reads so far
2011-05-20 07:44:38,650 - INFO - Processed 156800000 reads so far
2011-05-20 07:44:46,580 - INFO - Processed 156900000 reads so far
2011-05-20 07:44:48,296 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:66351870-86371870
2011-05-20 07:44:57,042 - INFO - Processed 157000000 reads so far
2011-05-20 07:45:07,631 - INFO - Processed 157100000 reads so far
2011-05-20 07:45:18,756 - INFO - Processed 157200000 reads so far
2011-05-20 07:45:29,113 - INFO - Processed 157300000 reads so far
2011-05-20 07:45:40,142 - INFO - Processed 157400000 reads so far
2011-05-20 07:45:51,943 - INFO - Processed 157500000 reads so far
2011-05-20 07:46:03,095 - INFO - Processed 157600000 reads so far
2011-05-20 07:46:12,288 - INFO - Processed 157700000 reads so far
2011-05-20 07:46:23,556 - INFO - Processed 157800000 reads so far
2011-05-20 07:46:35,165 - INFO - Processed 157900000 reads so far
2011-05-20 07:46:46,735 - INFO - Processed 158000000 reads so far
2011-05-20 07:46:57,610 - INFO - Processed 158100000 reads so far
2011-05-20 07:47:08,962 - INFO - Processed 158200000 reads so far
2011-05-20 07:47:19,522 - INFO - Processed 158300000 reads so far
2011-05-20 07:47:21,774 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:86351879-106371879
2011-05-20 07:47:31,351 - INFO - Processed 158400000 reads so far
2011-05-20 07:47:42,626 - INFO - Processed 158500000 reads so far
2011-05-20 07:47:54,702 - INFO - Processed 158600000 reads so far
2011-05-20 07:48:07,634 - INFO - Processed 158700000 reads so far
2011-05-20 07:48:18,526 - INFO - Processed 158800000 reads so far
2011-05-20 07:48:29,926 - INFO - Processed 158900000 reads so far
2011-05-20 07:48:41,531 - INFO - Processed 159000000 reads so far
2011-05-20 07:48:52,699 - INFO - Processed 159100000 reads so far
2011-05-20 07:49:04,769 - INFO - Processed 159200000 reads so far
2011-05-20 07:49:13,857 - INFO - Processed 159300000 reads so far
2011-05-20 07:49:23,501 - INFO - Processed 159400000 reads so far
2011-05-20 07:49:33,634 - INFO - Processed 159500000 reads so far
2011-05-20 07:49:44,318 - INFO - Processed 159600000 reads so far
2011-05-20 07:49:51,660 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:106351883-126371883
2011-05-20 07:49:55,477 - INFO - Processed 159700000 reads so far
2011-05-20 07:50:06,634 - INFO - Processed 159800000 reads so far
2011-05-20 07:50:18,498 - INFO - Processed 159900000 reads so far
2011-05-20 07:50:27,623 - INFO - Processed 160000000 reads so far
2011-05-20 07:50:37,233 - INFO - Processed 160100000 reads so far
2011-05-20 07:50:47,856 - INFO - Processed 160200000 reads so far
2011-05-20 07:50:56,449 - INFO - Processed 160300000 reads so far
2011-05-20 07:51:08,330 - INFO - Processed 160400000 reads so far
2011-05-20 07:51:16,779 - INFO - Processed 160500000 reads so far
2011-05-20 07:51:25,788 - INFO - Processed 160600000 reads so far
2011-05-20 07:51:34,199 - INFO - Processed 160700000 reads so far
2011-05-20 07:51:42,631 - INFO - Processed 160800000 reads so far
2011-05-20 07:51:50,880 - INFO - Processed 160900000 reads so far
2011-05-20 07:51:59,477 - INFO - Processed 161000000 reads so far
2011-05-20 07:52:02,457 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:126351907-146371907
2011-05-20 07:52:10,341 - INFO - Processed 161100000 reads so far
2011-05-20 07:52:20,251 - INFO - Processed 161200000 reads so far
2011-05-20 07:52:29,576 - INFO - Processed 161300000 reads so far
2011-05-20 07:52:38,039 - INFO - Processed 161400000 reads so far
2011-05-20 07:52:46,086 - INFO - Processed 161500000 reads so far
2011-05-20 07:52:54,486 - INFO - Processed 161600000 reads so far
2011-05-20 07:53:02,727 - INFO - Processed 161700000 reads so far
2011-05-20 07:53:12,491 - INFO - Processed 161800000 reads so far
2011-05-20 07:53:20,048 - INFO - Processed 161900000 reads so far
2011-05-20 07:53:28,918 - INFO - Processed 162000000 reads so far
2011-05-20 07:53:37,744 - INFO - Processed 162100000 reads so far
2011-05-20 07:53:48,519 - INFO - Processed 162200000 reads so far
2011-05-20 07:53:57,987 - INFO - Processed 162300000 reads so far
2011-05-20 07:54:09,415 - INFO - Processed 162400000 reads so far
2011-05-20 07:54:11,108 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:146351910-166371910
2011-05-20 07:54:19,066 - INFO - Processed 162500000 reads so far
2011-05-20 07:54:30,160 - INFO - Processed 162600000 reads so far
2011-05-20 07:54:39,737 - INFO - Processed 162700000 reads so far
2011-05-20 07:54:48,450 - INFO - Processed 162800000 reads so far
2011-05-20 07:54:52,300 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7_random:0-20010011
2011-05-20 07:54:53,843 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:2990000-23010000
2011-05-20 07:54:59,664 - INFO - Processed 162900000 reads so far
2011-05-20 07:55:10,274 - INFO - Processed 163000000 reads so far
2011-05-20 07:55:21,175 - INFO - Processed 163100000 reads so far
2011-05-20 07:55:33,987 - INFO - Processed 163200000 reads so far
2011-05-20 07:55:44,504 - INFO - Processed 163300000 reads so far
2011-05-20 07:55:56,176 - INFO - Processed 163400000 reads so far
2011-05-20 07:56:07,523 - INFO - Processed 163500000 reads so far
2011-05-20 07:56:18,231 - INFO - Processed 163600000 reads so far
2011-05-20 07:56:28,720 - INFO - Processed 163700000 reads so far
2011-05-20 07:56:39,166 - INFO - Processed 163800000 reads so far
2011-05-20 07:56:50,752 - INFO - Processed 163900000 reads so far
2011-05-20 07:56:59,065 - INFO - Processed 164000000 reads so far
2011-05-20 07:57:07,971 - INFO - Processed 164100000 reads so far
2011-05-20 07:57:16,396 - INFO - Processed 164200000 reads so far
2011-05-20 07:57:25,394 - INFO - Processed 164300000 reads so far
2011-05-20 07:57:29,307 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:22990007-43010007
2011-05-20 07:57:34,061 - INFO - Processed 164400000 reads so far
2011-05-20 07:57:43,980 - INFO - Processed 164500000 reads so far
2011-05-20 07:57:53,892 - INFO - Processed 164600000 reads so far
2011-05-20 07:58:04,641 - INFO - Processed 164700000 reads so far
2011-05-20 07:58:15,843 - INFO - Processed 164800000 reads so far
2011-05-20 07:58:27,037 - INFO - Processed 164900000 reads so far
2011-05-20 07:58:39,976 - INFO - Processed 165000000 reads so far
2011-05-20 07:58:51,618 - INFO - Processed 165100000 reads so far
2011-05-20 07:59:03,021 - INFO - Processed 165200000 reads so far
2011-05-20 07:59:15,645 - INFO - Processed 165300000 reads so far
2011-05-20 07:59:27,847 - INFO - Processed 165400000 reads so far
2011-05-20 07:59:39,391 - INFO - Processed 165500000 reads so far
2011-05-20 07:59:51,085 - INFO - Processed 165600000 reads so far
2011-05-20 08:00:01,208 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:42990016-63010016
2011-05-20 08:00:02,652 - INFO - Processed 165700000 reads so far
2011-05-20 08:00:14,004 - INFO - Processed 165800000 reads so far
2011-05-20 08:00:25,765 - INFO - Processed 165900000 reads so far
2011-05-20 08:00:35,940 - INFO - Processed 166000000 reads so far
2011-05-20 08:00:46,158 - INFO - Processed 166100000 reads so far
2011-05-20 08:00:58,542 - INFO - Processed 166200000 reads so far
2011-05-20 08:01:09,684 - INFO - Processed 166300000 reads so far
2011-05-20 08:01:20,428 - INFO - Processed 166400000 reads so far
2011-05-20 08:01:33,292 - INFO - Processed 166500000 reads so far
2011-05-20 08:01:44,709 - INFO - Processed 166600000 reads so far
2011-05-20 08:01:56,097 - INFO - Processed 166700000 reads so far
2011-05-20 08:02:07,393 - INFO - Processed 166800000 reads so far
2011-05-20 08:02:18,667 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:62990028-83010028
2011-05-20 08:02:19,402 - INFO - Processed 166900000 reads so far
2011-05-20 08:02:29,402 - INFO - Processed 167000000 reads so far
2011-05-20 08:02:40,366 - INFO - Processed 167100000 reads so far
2011-05-20 08:02:51,354 - INFO - Processed 167200000 reads so far
2011-05-20 08:02:59,732 - INFO - Processed 167300000 reads so far
2011-05-20 08:03:07,680 - INFO - Processed 167400000 reads so far
2011-05-20 08:03:18,308 - INFO - Processed 167500000 reads so far
2011-05-20 08:03:30,931 - INFO - Processed 167600000 reads so far
2011-05-20 08:03:42,431 - INFO - Processed 167700000 reads so far
2011-05-20 08:03:53,860 - INFO - Processed 167800000 reads so far
2011-05-20 08:04:06,808 - INFO - Processed 167900000 reads so far
2011-05-20 08:04:17,932 - INFO - Processed 168000000 reads so far
2011-05-20 08:04:28,985 - INFO - Processed 168100000 reads so far
2011-05-20 08:04:41,749 - INFO - Processed 168200000 reads so far
2011-05-20 08:04:48,645 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:82990070-103010070
2011-05-20 08:04:53,496 - INFO - Processed 168300000 reads so far
2011-05-20 08:05:04,976 - INFO - Processed 168400000 reads so far
2011-05-20 08:05:18,916 - INFO - Processed 168500000 reads so far
2011-05-20 08:05:31,894 - INFO - Processed 168600000 reads so far
2011-05-20 08:05:43,044 - INFO - Processed 168700000 reads so far
2011-05-20 08:05:54,444 - INFO - Processed 168800000 reads so far
2011-05-20 08:06:05,481 - INFO - Processed 168900000 reads so far
2011-05-20 08:06:16,757 - INFO - Processed 169000000 reads so far
2011-05-20 08:06:25,526 - INFO - Processed 169100000 reads so far
2011-05-20 08:06:34,058 - INFO - Processed 169200000 reads so far
2011-05-20 08:06:42,716 - INFO - Processed 169300000 reads so far
2011-05-20 08:06:51,047 - INFO - Processed 169400000 reads so far
2011-05-20 08:06:59,695 - INFO - Processed 169500000 reads so far
2011-05-20 08:07:09,835 - INFO - Processed 169600000 reads so far
2011-05-20 08:07:10,350 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:102990073-123010073
2011-05-20 08:07:18,390 - INFO - Processed 169700000 reads so far
2011-05-20 08:07:27,030 - INFO - Processed 169800000 reads so far
2011-05-20 08:07:35,472 - INFO - Processed 169900000 reads so far
2011-05-20 08:07:45,505 - INFO - Processed 170000000 reads so far
2011-05-20 08:07:56,259 - INFO - Processed 170100000 reads so far
2011-05-20 08:08:05,754 - INFO - Processed 170200000 reads so far
2011-05-20 08:08:14,155 - INFO - Processed 170300000 reads so far
2011-05-20 08:08:23,627 - INFO - Processed 170400000 reads so far
2011-05-20 08:08:31,972 - INFO - Processed 170500000 reads so far
2011-05-20 08:08:40,156 - INFO - Processed 170600000 reads so far
2011-05-20 08:08:48,914 - INFO - Processed 170700000 reads so far
2011-05-20 08:08:57,265 - INFO - Processed 170800000 reads so far
2011-05-20 08:09:06,256 - INFO - Processed 170900000 reads so far
2011-05-20 08:09:11,588 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:122990078-143010078
2011-05-20 08:09:16,252 - INFO - Processed 171000000 reads so far
2011-05-20 08:09:30,277 - INFO - Processed 171100000 reads so far
2011-05-20 08:09:44,826 - INFO - Processed 171200000 reads so far
2011-05-20 08:09:55,707 - INFO - Processed 171300000 reads so far
2011-05-20 08:10:10,374 - INFO - Processed 171400000 reads so far
2011-05-20 08:10:19,890 - INFO - Processed 171500000 reads so far
2011-05-20 08:10:25,411 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8_random:0-20010036
2011-05-20 08:10:29,340 - INFO - Processed 171600000 reads so far
2011-05-20 08:10:35,901 - INFO - Processed 171700000 reads so far
2011-05-20 08:10:38,425 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:2989968-23009968
2011-05-20 08:10:43,573 - INFO - Processed 171800000 reads so far
2011-05-20 08:10:50,624 - INFO - Processed 171900000 reads so far
2011-05-20 08:11:00,849 - INFO - Processed 172000000 reads so far
2011-05-20 08:11:08,757 - INFO - Processed 172100000 reads so far
2011-05-20 08:11:15,326 - INFO - Processed 172200000 reads so far
2011-05-20 08:11:22,044 - INFO - Processed 172300000 reads so far
2011-05-20 08:11:31,256 - INFO - Processed 172400000 reads so far
2011-05-20 08:11:38,002 - INFO - Processed 172500000 reads so far
2011-05-20 08:11:44,629 - INFO - Processed 172600000 reads so far
2011-05-20 08:11:54,026 - INFO - Processed 172700000 reads so far
2011-05-20 08:12:01,055 - INFO - Processed 172800000 reads so far
2011-05-20 08:12:10,467 - INFO - Processed 172900000 reads so far
2011-05-20 08:12:18,657 - INFO - Processed 173000000 reads so far
2011-05-20 08:12:27,048 - INFO - Processed 173100000 reads so far
2011-05-20 08:12:35,955 - INFO - Processed 173200000 reads so far
2011-05-20 08:12:44,753 - INFO - Processed 173300000 reads so far
2011-05-20 08:12:51,433 - INFO - Processed 173400000 reads so far
2011-05-20 08:12:58,251 - INFO - Processed 173500000 reads so far
2011-05-20 08:13:05,630 - INFO - Processed 173600000 reads so far
2011-05-20 08:13:14,768 - INFO - Processed 173700000 reads so far
2011-05-20 08:13:21,858 - INFO - Processed 173800000 reads so far
2011-05-20 08:13:28,851 - INFO - Processed 173900000 reads so far
2011-05-20 08:13:37,190 - INFO - Processed 174000000 reads so far
2011-05-20 08:13:45,527 - INFO - Processed 174100000 reads so far
2011-05-20 08:13:52,941 - INFO - Processed 174200000 reads so far
2011-05-20 08:14:00,208 - INFO - Processed 174300000 reads so far
2011-05-20 08:14:07,003 - INFO - Processed 174400000 reads so far
2011-05-20 08:14:15,899 - INFO - Processed 174500000 reads so far
2011-05-20 08:14:25,281 - INFO - Processed 174600000 reads so far
2011-05-20 08:14:34,389 - INFO - Processed 174700000 reads so far
2011-05-20 08:14:43,336 - INFO - Processed 174800000 reads so far
2011-05-20 08:14:52,493 - INFO - Processed 174900000 reads so far
2011-05-20 08:14:59,702 - INFO - Processed 175000000 reads so far
2011-05-20 08:15:08,756 - INFO - Processed 175100000 reads so far
2011-05-20 08:15:15,823 - INFO - Processed 175200000 reads so far
2011-05-20 08:15:23,056 - INFO - Processed 175300000 reads so far
2011-05-20 08:15:30,802 - INFO - Processed 175400000 reads so far
2011-05-20 08:15:37,568 - INFO - Processed 175500000 reads so far
2011-05-20 08:15:45,196 - INFO - Processed 175600000 reads so far
2011-05-20 08:15:52,109 - INFO - Processed 175700000 reads so far
2011-05-20 08:15:59,389 - INFO - Processed 175800000 reads so far
2011-05-20 08:16:06,618 - INFO - Processed 175900000 reads so far
2011-05-20 08:16:14,397 - INFO - Processed 176000000 reads so far
2011-05-20 08:16:21,806 - INFO - Processed 176100000 reads so far
2011-05-20 08:16:32,240 - INFO - Processed 176200000 reads so far
2011-05-20 08:16:41,286 - INFO - Processed 176300000 reads so far
2011-05-20 08:16:49,909 - INFO - Processed 176400000 reads so far
2011-05-20 08:16:57,583 - INFO - Processed 176500000 reads so far
2011-05-20 08:17:07,253 - INFO - Processed 176600000 reads so far
2011-05-20 08:17:16,622 - INFO - Processed 176700000 reads so far
2011-05-20 08:17:25,251 - INFO - Processed 176800000 reads so far
2011-05-20 08:17:34,208 - INFO - Processed 176900000 reads so far
2011-05-20 08:17:41,159 - INFO - Processed 177000000 reads so far
2011-05-20 08:17:48,619 - INFO - Processed 177100000 reads so far
2011-05-20 08:17:55,116 - INFO - Processed 177200000 reads so far
2011-05-20 08:18:01,877 - INFO - Processed 177300000 reads so far
2011-05-20 08:18:08,904 - INFO - Processed 177400000 reads so far
2011-05-20 08:18:16,690 - INFO - Processed 177500000 reads so far
2011-05-20 08:18:24,798 - INFO - Processed 177600000 reads so far
2011-05-20 08:18:34,619 - INFO - Processed 177700000 reads so far
2011-05-20 08:18:41,479 - INFO - Processed 177800000 reads so far
2011-05-20 08:18:49,733 - INFO - Processed 177900000 reads so far
2011-05-20 08:18:57,569 - INFO - Processed 178000000 reads so far
2011-05-20 08:19:05,736 - INFO - Processed 178100000 reads so far
2011-05-20 08:19:11,904 - INFO - Processed 178200000 reads so far
2011-05-20 08:19:19,327 - INFO - Processed 178300000 reads so far
2011-05-20 08:19:26,550 - INFO - Processed 178400000 reads so far
2011-05-20 08:19:33,202 - INFO - Processed 178500000 reads so far
2011-05-20 08:19:40,201 - INFO - Processed 178600000 reads so far
2011-05-20 08:19:46,701 - INFO - Processed 178700000 reads so far
2011-05-20 08:19:52,982 - INFO - Processed 178800000 reads so far
2011-05-20 08:20:00,250 - INFO - Processed 178900000 reads so far
2011-05-20 08:20:06,810 - INFO - Processed 179000000 reads so far
2011-05-20 08:20:13,863 - INFO - Processed 179100000 reads so far
2011-05-20 08:20:22,271 - INFO - Processed 179200000 reads so far
2011-05-20 08:20:28,784 - INFO - Processed 179300000 reads so far
2011-05-20 08:20:35,796 - INFO - Processed 179400000 reads so far
2011-05-20 08:20:42,390 - INFO - Processed 179500000 reads so far
2011-05-20 08:20:50,625 - INFO - Processed 179600000 reads so far
2011-05-20 08:20:58,279 - INFO - Processed 179700000 reads so far
2011-05-20 08:21:05,187 - INFO - Processed 179800000 reads so far
2011-05-20 08:21:12,674 - INFO - Processed 179900000 reads so far
2011-05-20 08:21:19,501 - INFO - Processed 180000000 reads so far
2011-05-20 08:21:27,170 - INFO - Processed 180100000 reads so far
2011-05-20 08:21:34,849 - INFO - Processed 180200000 reads so far
2011-05-20 08:21:42,708 - INFO - Processed 180300000 reads so far
2011-05-20 08:21:50,089 - INFO - Processed 180400000 reads so far
2011-05-20 08:21:57,350 - INFO - Processed 180500000 reads so far
2011-05-20 08:22:04,107 - INFO - Processed 180600000 reads so far
2011-05-20 08:22:11,175 - INFO - Processed 180700000 reads so far
2011-05-20 08:22:17,770 - INFO - Processed 180800000 reads so far
2011-05-20 08:22:24,560 - INFO - Processed 180900000 reads so far
2011-05-20 08:22:31,519 - INFO - Processed 181000000 reads so far
2011-05-20 08:22:39,854 - INFO - Processed 181100000 reads so far
2011-05-20 08:22:47,385 - INFO - Processed 181200000 reads so far
2011-05-20 08:22:54,160 - INFO - Processed 181300000 reads so far
2011-05-20 08:23:02,046 - INFO - Processed 181400000 reads so far
2011-05-20 08:23:10,512 - INFO - Processed 181500000 reads so far
2011-05-20 08:23:19,731 - INFO - Processed 181600000 reads so far
2011-05-20 08:23:26,905 - INFO - Processed 181700000 reads so far
2011-05-20 08:23:33,786 - INFO - Processed 181800000 reads so far
2011-05-20 08:23:40,892 - INFO - Processed 181900000 reads so far
2011-05-20 08:23:48,772 - INFO - Processed 182000000 reads so far
2011-05-20 08:23:55,979 - INFO - Processed 182100000 reads so far
2011-05-20 08:24:03,952 - INFO - Processed 182200000 reads so far
2011-05-20 08:24:12,455 - INFO - Processed 182300000 reads so far
2011-05-20 08:24:20,920 - INFO - Processed 182400000 reads so far
2011-05-20 08:24:29,052 - INFO - Processed 182500000 reads so far
2011-05-20 08:24:37,989 - INFO - Processed 182600000 reads so far
2011-05-20 08:24:47,857 - INFO - Processed 182700000 reads so far
2011-05-20 08:24:57,006 - INFO - Processed 182800000 reads so far
2011-05-20 08:25:07,414 - INFO - Processed 182900000 reads so far
2011-05-20 08:25:15,800 - INFO - Processed 183000000 reads so far
2011-05-20 08:25:24,766 - INFO - Processed 183100000 reads so far
2011-05-20 08:25:33,452 - INFO - Processed 183200000 reads so far
2011-05-20 08:25:42,909 - INFO - Processed 183300000 reads so far
2011-05-20 08:25:51,412 - INFO - Processed 183400000 reads so far
2011-05-20 08:25:52,119 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:22989989-43009989
2011-05-20 08:26:00,169 - INFO - Processed 183500000 reads so far
2011-05-20 08:26:07,628 - INFO - Processed 183600000 reads so far
2011-05-20 08:26:15,448 - INFO - Processed 183700000 reads so far
2011-05-20 08:26:22,749 - INFO - Processed 183800000 reads so far
2011-05-20 08:26:31,590 - INFO - Processed 183900000 reads so far
2011-05-20 08:26:39,725 - INFO - Processed 184000000 reads so far
2011-05-20 08:26:47,447 - INFO - Processed 184100000 reads so far
2011-05-20 08:26:55,501 - INFO - Processed 184200000 reads so far
2011-05-20 08:27:03,618 - INFO - Processed 184300000 reads so far
2011-05-20 08:27:10,447 - INFO - Processed 184400000 reads so far
2011-05-20 08:27:18,448 - INFO - Processed 184500000 reads so far
2011-05-20 08:27:28,071 - INFO - Processed 184600000 reads so far
2011-05-20 08:27:36,627 - INFO - Processed 184700000 reads so far
2011-05-20 08:27:44,288 - INFO - Processed 184800000 reads so far
2011-05-20 08:27:54,280 - INFO - Processed 184900000 reads so far
2011-05-20 08:28:04,190 - INFO - Processed 185000000 reads so far
2011-05-20 08:28:06,708 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:42990005-63010005
2011-05-20 08:28:15,541 - INFO - Processed 185100000 reads so far
2011-05-20 08:28:26,716 - INFO - Processed 185200000 reads so far
2011-05-20 08:28:37,864 - INFO - Processed 185300000 reads so far
2011-05-20 08:28:48,800 - INFO - Processed 185400000 reads so far
2011-05-20 08:28:59,723 - INFO - Processed 185500000 reads so far
2011-05-20 08:29:10,627 - INFO - Processed 185600000 reads so far
2011-05-20 08:29:18,446 - INFO - Processed 185700000 reads so far
2011-05-20 08:29:26,622 - INFO - Processed 185800000 reads so far
2011-05-20 08:29:34,484 - INFO - Processed 185900000 reads so far
2011-05-20 08:29:43,212 - INFO - Processed 186000000 reads so far
2011-05-20 08:29:51,093 - INFO - Processed 186100000 reads so far
2011-05-20 08:30:00,905 - INFO - Processed 186200000 reads so far
2011-05-20 08:30:08,998 - INFO - Processed 186300000 reads so far
2011-05-20 08:30:16,978 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:62990020-83010020
2011-05-20 08:30:17,611 - INFO - Processed 186400000 reads so far
2011-05-20 08:30:26,855 - INFO - Processed 186500000 reads so far
2011-05-20 08:30:34,837 - INFO - Processed 186600000 reads so far
2011-05-20 08:30:42,304 - INFO - Processed 186700000 reads so far
2011-05-20 08:30:52,514 - INFO - Processed 186800000 reads so far
2011-05-20 08:31:01,438 - INFO - Processed 186900000 reads so far
2011-05-20 08:31:09,083 - INFO - Processed 187000000 reads so far
2011-05-20 08:31:16,696 - INFO - Processed 187100000 reads so far
2011-05-20 08:31:26,207 - INFO - Processed 187200000 reads so far
2011-05-20 08:31:37,166 - INFO - Processed 187300000 reads so far
2011-05-20 08:31:47,136 - INFO - Processed 187400000 reads so far
2011-05-20 08:31:53,970 - INFO - Processed 187500000 reads so far
2011-05-20 08:32:04,335 - INFO - Processed 187600000 reads so far
2011-05-20 08:32:13,644 - INFO - Processed 187700000 reads so far
2011-05-20 08:32:17,753 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:82990023-103010023
2011-05-20 08:32:22,793 - INFO - Processed 187800000 reads so far
2011-05-20 08:32:34,070 - INFO - Processed 187900000 reads so far
2011-05-20 08:32:46,871 - INFO - Processed 188000000 reads so far
2011-05-20 08:32:55,366 - INFO - Processed 188100000 reads so far
2011-05-20 08:33:06,553 - INFO - Processed 188200000 reads so far
2011-05-20 08:33:16,346 - INFO - Processed 188300000 reads so far
2011-05-20 08:33:27,443 - INFO - Processed 188400000 reads so far
2011-05-20 08:33:39,191 - INFO - Processed 188500000 reads so far
2011-05-20 08:33:47,658 - INFO - Processed 188600000 reads so far
2011-05-20 08:33:58,814 - INFO - Processed 188700000 reads so far
2011-05-20 08:34:08,024 - INFO - Processed 188800000 reads so far
2011-05-20 08:34:15,870 - INFO - Processed 188900000 reads so far
2011-05-20 08:34:23,243 - INFO - Processed 189000000 reads so far
2011-05-20 08:34:32,651 - INFO - Processed 189100000 reads so far
2011-05-20 08:34:35,643 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:102990031-123010031
2011-05-20 08:34:43,314 - INFO - Processed 189200000 reads so far
2011-05-20 08:34:55,011 - INFO - Processed 189300000 reads so far
2011-05-20 08:35:05,857 - INFO - Processed 189400000 reads so far
2011-05-20 08:35:14,968 - INFO - Processed 189500000 reads so far
2011-05-20 08:35:22,657 - INFO - Processed 189600000 reads so far
2011-05-20 08:35:31,389 - INFO - Processed 189700000 reads so far
2011-05-20 08:35:43,485 - INFO - Processed 189800000 reads so far
2011-05-20 08:35:54,624 - INFO - Processed 189900000 reads so far
2011-05-20 08:36:02,866 - INFO - Processed 190000000 reads so far
2011-05-20 08:36:11,862 - INFO - Processed 190100000 reads so far
2011-05-20 08:36:19,325 - INFO - Processed 190200000 reads so far
2011-05-20 08:36:27,683 - INFO - Processed 190300000 reads so far
2011-05-20 08:36:35,653 - INFO - Processed 190400000 reads so far
2011-05-20 08:36:44,216 - INFO - Processed 190500000 reads so far
2011-05-20 08:36:45,190 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:122990035-143010035
2011-05-20 08:36:50,992 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9_random:0-20010005
2011-05-20 08:36:52,450 - INFO - Processed 190600000 reads so far
2011-05-20 08:36:54,998 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrM:0-20010000
2011-05-20 08:36:59,617 - INFO - Processed 190700000 reads so far
2011-05-20 08:37:04,446 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrUn_random:0-20010003
2011-05-20 08:37:05,613 - INFO - Processed 190800000 reads so far
2011-05-20 08:37:16,830 - INFO - Processed 190900000 reads so far
2011-05-20 08:37:26,348 - INFO - Processed 191000000 reads so far
2011-05-20 08:37:36,215 - INFO - Processed 191100000 reads so far
2011-05-20 08:37:45,525 - INFO - Processed 191200000 reads so far
2011-05-20 08:37:54,982 - INFO - Processed 191300000 reads so far
2011-05-20 08:37:59,505 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:2990005-23010005
2011-05-20 08:38:04,574 - INFO - Processed 191400000 reads so far
2011-05-20 08:38:17,271 - INFO - Processed 191500000 reads so far
2011-05-20 08:38:26,785 - INFO - Processed 191600000 reads so far
2011-05-20 08:38:36,533 - INFO - Processed 191700000 reads so far
2011-05-20 08:38:48,355 - INFO - Processed 191800000 reads so far
2011-05-20 08:38:59,649 - INFO - Processed 191900000 reads so far
2011-05-20 08:39:10,074 - INFO - Processed 192000000 reads so far
2011-05-20 08:39:17,811 - INFO - Processed 192100000 reads so far
2011-05-20 08:39:31,111 - INFO - Processed 192200000 reads so far
2011-05-20 08:39:40,951 - INFO - Processed 192300000 reads so far
2011-05-20 08:39:49,359 - INFO - Processed 192400000 reads so far
2011-05-20 08:39:57,784 - INFO - Processed 192500000 reads so far
2011-05-20 08:40:07,326 - INFO - Processed 192600000 reads so far
2011-05-20 08:40:15,646 - INFO - Processed 192700000 reads so far
2011-05-20 08:40:26,482 - INFO - Processed 192800000 reads so far
2011-05-20 08:40:36,178 - INFO - Processed 192900000 reads so far
2011-05-20 08:40:38,315 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:22990023-43010023
2011-05-20 08:40:47,528 - INFO - Processed 193000000 reads so far
2011-05-20 08:40:59,389 - INFO - Processed 193100000 reads so far
2011-05-20 08:41:10,238 - INFO - Processed 193200000 reads so far
2011-05-20 08:41:22,990 - INFO - Processed 193300000 reads so far
2011-05-20 08:41:33,352 - INFO - Processed 193400000 reads so far
2011-05-20 08:41:42,733 - INFO - Processed 193500000 reads so far
2011-05-20 08:41:54,219 - INFO - Processed 193600000 reads so far
2011-05-20 08:42:01,405 - INFO - Processed 193700000 reads so far
2011-05-20 08:42:08,646 - INFO - Processed 193800000 reads so far
2011-05-20 08:42:16,403 - INFO - Processed 193900000 reads so far
2011-05-20 08:42:25,341 - INFO - Processed 194000000 reads so far
2011-05-20 08:42:36,083 - INFO - Processed 194100000 reads so far
2011-05-20 08:42:45,594 - INFO - Processed 194200000 reads so far
2011-05-20 08:42:54,498 - INFO - Processed 194300000 reads so far
2011-05-20 08:43:03,047 - INFO - Processed 194400000 reads so far
2011-05-20 08:43:12,171 - INFO - Processed 194500000 reads so far
2011-05-20 08:43:14,690 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:42990032-63010032
2011-05-20 08:43:20,748 - INFO - Processed 194600000 reads so far
2011-05-20 08:43:29,125 - INFO - Processed 194700000 reads so far
2011-05-20 08:43:36,440 - INFO - Processed 194800000 reads so far
2011-05-20 08:43:44,530 - INFO - Processed 194900000 reads so far
2011-05-20 08:43:55,182 - INFO - Processed 195000000 reads so far
2011-05-20 08:44:02,795 - INFO - Processed 195100000 reads so far
2011-05-20 08:44:19,120 - INFO - Processed 195200000 reads so far
2011-05-20 08:44:29,502 - INFO - Processed 195300000 reads so far
2011-05-20 08:44:38,810 - INFO - Processed 195400000 reads so far
2011-05-20 08:44:50,120 - INFO - Processed 195500000 reads so far
2011-05-20 08:45:02,316 - INFO - Processed 195600000 reads so far
2011-05-20 08:45:14,462 - INFO - Processed 195700000 reads so far
2011-05-20 08:45:25,510 - INFO - Processed 195800000 reads so far
2011-05-20 08:45:36,353 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:62990039-83010039
2011-05-20 08:45:37,626 - INFO - Processed 195900000 reads so far
2011-05-20 08:45:50,932 - INFO - Processed 196000000 reads so far
2011-05-20 08:46:01,866 - INFO - Processed 196100000 reads so far
2011-05-20 08:46:13,785 - INFO - Processed 196200000 reads so far
2011-05-20 08:46:24,699 - INFO - Processed 196300000 reads so far
2011-05-20 08:46:39,893 - INFO - Processed 196400000 reads so far
2011-05-20 08:46:51,461 - INFO - Processed 196500000 reads so far
2011-05-20 08:47:03,738 - INFO - Processed 196600000 reads so far
2011-05-20 08:47:14,385 - INFO - Processed 196700000 reads so far
2011-05-20 08:47:25,339 - INFO - Processed 196800000 reads so far
2011-05-20 08:47:35,566 - INFO - Processed 196900000 reads so far
2011-05-20 08:47:46,396 - INFO - Processed 197000000 reads so far
2011-05-20 08:47:58,591 - INFO - Processed 197100000 reads so far
2011-05-20 08:48:09,981 - INFO - Processed 197200000 reads so far
2011-05-20 08:48:11,697 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:82990052-103010052
2011-05-20 08:48:21,878 - INFO - Processed 197300000 reads so far
2011-05-20 08:48:33,854 - INFO - Processed 197400000 reads so far
2011-05-20 08:48:45,588 - INFO - Processed 197500000 reads so far
2011-05-20 08:48:56,555 - INFO - Processed 197600000 reads so far
2011-05-20 08:49:08,216 - INFO - Processed 197700000 reads so far
2011-05-20 08:49:17,804 - INFO - Processed 197800000 reads so far
2011-05-20 08:49:27,361 - INFO - Processed 197900000 reads so far
2011-05-20 08:49:37,730 - INFO - Processed 198000000 reads so far
2011-05-20 08:49:48,247 - INFO - Processed 198100000 reads so far
2011-05-20 08:49:57,704 - INFO - Processed 198200000 reads so far
2011-05-20 08:50:07,227 - INFO - Processed 198300000 reads so far
2011-05-20 08:50:16,907 - INFO - Processed 198400000 reads so far
2011-05-20 08:50:25,420 - INFO - Processed 198500000 reads so far
2011-05-20 08:50:29,721 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:102990065-123010065
2011-05-20 08:50:38,459 - INFO - Processed 198600000 reads so far
2011-05-20 08:50:48,401 - INFO - Processed 198700000 reads so far
2011-05-20 08:50:57,854 - INFO - Processed 198800000 reads so far
2011-05-20 08:51:06,804 - INFO - Processed 198900000 reads so far
2011-05-20 08:51:15,866 - INFO - Processed 199000000 reads so far
2011-05-20 08:51:24,163 - INFO - Processed 199100000 reads so far
2011-05-20 08:51:32,544 - INFO - Processed 199200000 reads so far
2011-05-20 08:51:42,427 - INFO - Processed 199300000 reads so far
2011-05-20 08:51:51,240 - INFO - Processed 199400000 reads so far
2011-05-20 08:51:59,713 - INFO - Processed 199500000 reads so far
2011-05-20 08:52:09,057 - INFO - Processed 199600000 reads so far
2011-05-20 08:52:17,360 - INFO - Processed 199700000 reads so far
2011-05-20 08:52:24,008 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:122990076-143010076
2011-05-20 08:52:27,087 - INFO - Processed 199800000 reads so far
2011-05-20 08:52:39,482 - INFO - Processed 199900000 reads so far
2011-05-20 08:52:50,686 - INFO - Processed 200000000 reads so far
2011-05-20 08:53:01,745 - INFO - Processed 200100000 reads so far
2011-05-20 08:53:12,651 - INFO - Processed 200200000 reads so far
2011-05-20 08:53:23,968 - INFO - Processed 200300000 reads so far
2011-05-20 08:53:35,235 - INFO - Processed 200400000 reads so far
2011-05-20 08:53:43,913 - INFO - Processed 200500000 reads so far
2011-05-20 08:53:55,400 - INFO - Processed 200600000 reads so far
2011-05-20 08:54:03,197 - INFO - Processed 200700000 reads so far
2011-05-20 08:54:11,787 - INFO - Processed 200800000 reads so far
2011-05-20 08:54:18,756 - INFO - Processed 200900000 reads so far
2011-05-20 08:54:26,726 - INFO - Processed 201000000 reads so far
2011-05-20 08:54:34,171 - INFO - Processed 201100000 reads so far
2011-05-20 08:54:38,755 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:142990079-163010079
2011-05-20 08:54:42,406 - INFO - Processed 201200000 reads so far
2011-05-20 08:54:52,959 - INFO - Processed 201300000 reads so far
2011-05-20 08:55:01,570 - INFO - Processed 201400000 reads so far
2011-05-20 08:55:09,792 - INFO - Processed 201500000 reads so far
2011-05-20 08:55:17,016 - INFO - Processed 201600000 reads so far
2011-05-20 08:55:25,054 - INFO - Processed 201700000 reads so far
2011-05-20 08:55:36,290 - INFO - Processed 201800000 reads so far
2011-05-20 08:55:43,349 - INFO - Processed 201900000 reads so far
2011-05-20 08:55:54,016 - INFO - Processed 202000000 reads so far
2011-05-20 08:56:03,956 - INFO - Processed 202100000 reads so far
2011-05-20 08:56:15,517 - INFO - Processed 202200000 reads so far
2011-05-20 08:56:26,561 - INFO - Processed 202300000 reads so far
2011-05-20 08:56:38,217 - INFO - Processed 202400000 reads so far
2011-05-20 08:56:43,767 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:162990080-183010080
2011-05-20 08:56:49,324 - INFO - Processed 202500000 reads so far
2011-05-20 08:57:00,442 - INFO - Processed 202600000 reads so far
2011-05-20 08:57:10,674 - INFO - Processed 202700000 reads so far
2011-05-20 08:57:21,076 - INFO - Processed 202800000 reads so far
2011-05-20 08:57:22,506 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX_random:0-20010011
2011-05-20 08:57:31,369 - INFO - Processed 202900000 reads so far
2011-05-20 08:57:31,515 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY:2089-20022089
2011-05-20 08:57:33,418 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:19082-20039082
2011-05-20 08:57:36,621 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:20034771-40054771
2011-05-20 08:57:38,893 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:40037053-60057053
2011-05-20 08:57:44,046 - INFO - Processed 203000000 reads so far
2011-05-20 08:57:48,323 - INFO - Processed 203100000 reads so far
2011-05-20 08:57:52,601 - INFO - Processed 203200000 reads so far
2011-05-20 08:57:56,853 - INFO - Processed 203300000 reads so far
2011-05-20 08:58:01,038 - INFO - Processed 203400000 reads so far
2011-05-20 08:58:05,322 - INFO - Processed 203500000 reads so far
2011-05-20 08:58:09,205 - INFO - Processed 203600000 reads so far
2011-05-20 08:58:12,262 - INFO - Processed 203700000 reads so far
2011-05-20 08:58:16,717 - INFO - Processed 203800000 reads so far
2011-05-20 08:58:20,747 - INFO - Processed 203900000 reads so far
2011-05-20 08:58:25,498 - INFO - Processed 204000000 reads so far
2011-05-20 08:58:29,002 - INFO - Processed 204100000 reads so far
2011-05-20 08:58:32,785 - INFO - Processed 204200000 reads so far
2011-05-20 08:58:37,484 - INFO - Processed 204300000 reads so far
2011-05-20 08:58:41,706 - INFO - Processed 204400000 reads so far
2011-05-20 08:58:44,574 - INFO - Processed 204500000 reads so far
2011-05-20 08:58:49,824 - INFO - Processed 204600000 reads so far
2011-05-20 08:58:52,995 - INFO - Processed 204700000 reads so far
2011-05-20 08:58:56,665 - INFO - Processed 204800000 reads so far
2011-05-20 08:59:01,377 - INFO - Processed 204900000 reads so far
2011-05-20 08:59:06,059 - INFO - Processed 205000000 reads so far
2011-05-20 08:59:09,643 - INFO - Processed 205100000 reads so far
2011-05-20 08:59:12,267 - INFO - Processed 205200000 reads so far
2011-05-20 08:59:14,466 - INFO - Finished loading data. Outputting QC metrics
2011-05-20 08:59:51,261 - INFO - Finished outputting QC metrics
2011-05-20 08:59:51,399 - INFO - Finished generating QC metrics