2011-05-20 14:58:08,095 - INFO - Generating QC metrics for BAM File ['WTCHG_13409.bam']
2011-05-20 14:58:08,095 - INFO - Output will go to WTCHG_13409.qc.txt.tmp
2011-05-20 14:58:08,095 - INFO - Reading GC Map from file /data/Genomes/gcMap/Mouse37.gcMap.gz
2011-05-20 15:00:56,652 - INFO - Finished reading GC Map
2011-05-20 15:00:56,668 - INFO - Reading CDS from exon definition file /data/Genomes/annotation/Mouse37.refGene.txt.gz
2011-05-20 15:00:59,308 - INFO - Read 382138 exons (33804740 nucleotides) for 32 chromosomes
2011-05-20 15:00:59,309 - INFO - Computing coverage cut-off
2011-05-20 15:00:59,310 - INFO - Retrieving BAM file coverage info from samtools pileup
2011-05-20 15:01:03,823 - INFO - Processed 1000000 pile-up sites
2011-05-20 15:01:07,808 - INFO - Processed 2000000 pile-up sites
2011-05-20 15:01:10,264 - INFO - Processed 3000000 pile-up sites
2011-05-20 15:01:14,115 - INFO - Processed 4000000 pile-up sites
2011-05-20 15:01:18,780 - INFO - Processed 5000000 pile-up sites
2011-05-20 15:01:22,369 - INFO - Processed 6000000 pile-up sites
2011-05-20 15:01:25,421 - INFO - Processed 7000000 pile-up sites
2011-05-20 15:01:29,709 - INFO - Processed 8000000 pile-up sites
2011-05-20 15:01:34,190 - INFO - Processed 9000000 pile-up sites
2011-05-20 15:01:38,266 - INFO - Processed 10000000 pile-up sites
2011-05-20 15:01:42,182 - INFO - Processed 11000000 pile-up sites
2011-05-20 15:01:46,147 - INFO - Processed 12000000 pile-up sites
2011-05-20 15:01:49,982 - INFO - Processed 13000000 pile-up sites
2011-05-20 15:01:53,524 - INFO - Processed 14000000 pile-up sites
2011-05-20 15:01:57,400 - INFO - Processed 15000000 pile-up sites
2011-05-20 15:02:01,913 - INFO - Processed 16000000 pile-up sites
2011-05-20 15:02:05,652 - INFO - Processed 17000000 pile-up sites
2011-05-20 15:02:09,903 - INFO - Processed 18000000 pile-up sites
2011-05-20 15:02:13,644 - INFO - Processed 19000000 pile-up sites
2011-05-20 15:02:16,799 - INFO - Processed 20000000 pile-up sites
2011-05-20 15:02:19,751 - INFO - Processed 21000000 pile-up sites
2011-05-20 15:02:24,096 - INFO - Processed 22000000 pile-up sites
2011-05-20 15:02:31,299 - INFO - Processed 23000000 pile-up sites
2011-05-20 15:02:36,207 - INFO - Processed 24000000 pile-up sites
2011-05-20 15:02:40,345 - INFO - Processed 25000000 pile-up sites
2011-05-20 15:02:45,732 - INFO - Processed 26000000 pile-up sites
2011-05-20 15:02:50,366 - INFO - Processed 27000000 pile-up sites
2011-05-20 15:02:54,511 - INFO - Processed 28000000 pile-up sites
2011-05-20 15:02:58,494 - INFO - Processed 29000000 pile-up sites
2011-05-20 15:02:59,480 - INFO - Finished processing pile-up on 29256471 sites (200000002 nucleotides)
2011-05-20 15:02:59,481 - INFO - Coverage cut-off value is 35
2011-05-20 15:02:59,481 - INFO - Loading data into QC data manager
2011-05-20 15:02:59,716 - INFO - Reading data from BAM file WTCHG_13409.bam. All reads in file will be read
2011-05-20 15:02:59,758 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:2989999-23009999
2011-05-20 15:03:10,848 - INFO - Processed 100000 reads so far
2011-05-20 15:03:22,077 - INFO - Processed 200000 reads so far
2011-05-20 15:03:34,189 - INFO - Processed 300000 reads so far
2011-05-20 15:03:44,529 - INFO - Processed 400000 reads so far
2011-05-20 15:03:55,143 - INFO - Processed 500000 reads so far
2011-05-20 15:04:05,594 - INFO - Processed 600000 reads so far
2011-05-20 15:04:16,306 - INFO - Processed 700000 reads so far
2011-05-20 15:04:26,040 - INFO - Processed 800000 reads so far
2011-05-20 15:04:36,645 - INFO - Processed 900000 reads so far
2011-05-20 15:04:49,053 - INFO - Processed 1000000 reads so far
2011-05-20 15:05:00,478 - INFO - Processed 1100000 reads so far
2011-05-20 15:05:11,474 - INFO - Processed 1200000 reads so far
2011-05-20 15:05:21,045 - INFO - Processed 1300000 reads so far
2011-05-20 15:05:26,901 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:22990093-43010093
2011-05-20 15:05:30,883 - INFO - Processed 1400000 reads so far
2011-05-20 15:05:40,933 - INFO - Processed 1500000 reads so far
2011-05-20 15:05:50,671 - INFO - Processed 1600000 reads so far
2011-05-20 15:06:00,425 - INFO - Processed 1700000 reads so far
2011-05-20 15:06:12,186 - INFO - Processed 1800000 reads so far
2011-05-20 15:06:23,653 - INFO - Processed 1900000 reads so far
2011-05-20 15:06:34,879 - INFO - Processed 2000000 reads so far
2011-05-20 15:06:48,262 - INFO - Processed 2100000 reads so far
2011-05-20 15:06:59,603 - INFO - Processed 2200000 reads so far
2011-05-20 15:07:10,869 - INFO - Processed 2300000 reads so far
2011-05-20 15:07:22,146 - INFO - Processed 2400000 reads so far
2011-05-20 15:07:33,464 - INFO - Processed 2500000 reads so far
2011-05-20 15:07:44,017 - INFO - Processed 2600000 reads so far
2011-05-20 15:07:51,012 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:42990100-63010100
2011-05-20 15:07:55,813 - INFO - Processed 2700000 reads so far
2011-05-20 15:08:05,780 - INFO - Processed 2800000 reads so far
2011-05-20 15:08:16,264 - INFO - Processed 2900000 reads so far
2011-05-20 15:08:25,333 - INFO - Processed 3000000 reads so far
2011-05-20 15:08:33,568 - INFO - Processed 3100000 reads so far
2011-05-20 15:08:42,646 - INFO - Processed 3200000 reads so far
2011-05-20 15:08:54,536 - INFO - Processed 3300000 reads so far
2011-05-20 15:09:03,495 - INFO - Processed 3400000 reads so far
2011-05-20 15:09:11,929 - INFO - Processed 3500000 reads so far
2011-05-20 15:09:21,846 - INFO - Processed 3600000 reads so far
2011-05-20 15:09:42,187 - INFO - Processed 3700000 reads so far
2011-05-20 15:09:53,338 - INFO - Processed 3800000 reads so far
2011-05-20 15:10:14,791 - INFO - Processed 3900000 reads so far
2011-05-20 15:10:26,306 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:62990102-83010102
2011-05-20 15:10:33,053 - INFO - Processed 4000000 reads so far
2011-05-20 15:10:44,017 - INFO - Processed 4100000 reads so far
2011-05-20 15:10:51,290 - INFO - Processed 4200000 reads so far
2011-05-20 15:10:58,690 - INFO - Processed 4300000 reads so far
2011-05-20 15:11:05,965 - INFO - Processed 4400000 reads so far
2011-05-20 15:11:13,536 - INFO - Processed 4500000 reads so far
2011-05-20 15:11:21,232 - INFO - Processed 4600000 reads so far
2011-05-20 15:11:29,430 - INFO - Processed 4700000 reads so far
2011-05-20 15:11:38,287 - INFO - Processed 4800000 reads so far
2011-05-20 15:11:48,004 - INFO - Processed 4900000 reads so far
2011-05-20 15:11:56,300 - INFO - Processed 5000000 reads so far
2011-05-20 15:12:05,045 - INFO - Processed 5100000 reads so far
2011-05-20 15:12:14,546 - INFO - Processed 5200000 reads so far
2011-05-20 15:12:18,419 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:82990105-103010105
2011-05-20 15:12:23,022 - INFO - Processed 5300000 reads so far
2011-05-20 15:12:33,822 - INFO - Processed 5400000 reads so far
2011-05-20 15:12:43,544 - INFO - Processed 5500000 reads so far
2011-05-20 15:12:54,361 - INFO - Processed 5600000 reads so far
2011-05-20 15:13:05,475 - INFO - Processed 5700000 reads so far
2011-05-20 15:13:14,260 - INFO - Processed 5800000 reads so far
2011-05-20 15:13:24,909 - INFO - Processed 5900000 reads so far
2011-05-20 15:13:36,692 - INFO - Processed 6000000 reads so far
2011-05-20 15:13:46,217 - INFO - Processed 6100000 reads so far
2011-05-20 15:13:57,258 - INFO - Processed 6200000 reads so far
2011-05-20 15:14:06,785 - INFO - Processed 6300000 reads so far
2011-05-20 15:14:15,888 - INFO - Processed 6400000 reads so far
2011-05-20 15:14:25,546 - INFO - Processed 6500000 reads so far
2011-05-20 15:14:32,518 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:102990120-123010120
2011-05-20 15:14:34,647 - INFO - Processed 6600000 reads so far
2011-05-20 15:14:45,636 - INFO - Processed 6700000 reads so far
2011-05-20 15:14:56,057 - INFO - Processed 6800000 reads so far
2011-05-20 15:15:05,790 - INFO - Processed 6900000 reads so far
2011-05-20 15:15:14,940 - INFO - Processed 7000000 reads so far
2011-05-20 15:15:26,113 - INFO - Processed 7100000 reads so far
2011-05-20 15:15:38,004 - INFO - Processed 7200000 reads so far
2011-05-20 15:15:49,454 - INFO - Processed 7300000 reads so far
2011-05-20 15:16:00,839 - INFO - Processed 7400000 reads so far
2011-05-20 15:16:12,632 - INFO - Processed 7500000 reads so far
2011-05-20 15:16:22,662 - INFO - Processed 7600000 reads so far
2011-05-20 15:16:33,443 - INFO - Processed 7700000 reads so far
2011-05-20 15:16:41,739 - INFO - Processed 7800000 reads so far
2011-05-20 15:16:46,116 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr10:122990121-143010121
2011-05-20 15:16:49,001 - INFO - Processed 7900000 reads so far
2011-05-20 15:16:56,761 - INFO - Processed 8000000 reads so far
2011-05-20 15:17:04,992 - INFO - Processed 8100000 reads so far
2011-05-20 15:17:13,636 - INFO - Processed 8200000 reads so far
2011-05-20 15:17:22,660 - INFO - Processed 8300000 reads so far
2011-05-20 15:17:23,998 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:2990003-23010003
2011-05-20 15:17:33,187 - INFO - Processed 8400000 reads so far
2011-05-20 15:17:43,011 - INFO - Processed 8500000 reads so far
2011-05-20 15:17:50,527 - INFO - Processed 8600000 reads so far
2011-05-20 15:18:00,240 - INFO - Processed 8700000 reads so far
2011-05-20 15:18:12,321 - INFO - Processed 8800000 reads so far
2011-05-20 15:18:23,831 - INFO - Processed 8900000 reads so far
2011-05-20 15:18:35,811 - INFO - Processed 9000000 reads so far
2011-05-20 15:18:47,900 - INFO - Processed 9100000 reads so far
2011-05-20 15:18:59,746 - INFO - Processed 9200000 reads so far
2011-05-20 15:19:11,247 - INFO - Processed 9300000 reads so far
2011-05-20 15:19:20,729 - INFO - Processed 9400000 reads so far
2011-05-20 15:19:30,388 - INFO - Processed 9500000 reads so far
2011-05-20 15:19:40,599 - INFO - Processed 9600000 reads so far
2011-05-20 15:19:51,448 - INFO - Processed 9700000 reads so far
2011-05-20 15:20:02,611 - INFO - Processed 9800000 reads so far
2011-05-20 15:20:04,669 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:22990011-43010011
2011-05-20 15:20:13,316 - INFO - Processed 9900000 reads so far
2011-05-20 15:20:22,318 - INFO - Processed 10000000 reads so far
2011-05-20 15:20:32,034 - INFO - Processed 10100000 reads so far
2011-05-20 15:20:40,875 - INFO - Processed 10200000 reads so far
2011-05-20 15:20:51,023 - INFO - Processed 10300000 reads so far
2011-05-20 15:20:59,995 - INFO - Processed 10400000 reads so far
2011-05-20 15:21:09,819 - INFO - Processed 10500000 reads so far
2011-05-20 15:21:20,001 - INFO - Processed 10600000 reads so far
2011-05-20 15:21:29,158 - INFO - Processed 10700000 reads so far
2011-05-20 15:21:37,088 - INFO - Processed 10800000 reads so far
2011-05-20 15:21:46,268 - INFO - Processed 10900000 reads so far
2011-05-20 15:21:57,454 - INFO - Processed 11000000 reads so far
2011-05-20 15:22:10,197 - INFO - Processed 11100000 reads so far
2011-05-20 15:22:13,173 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:42990028-63010028
2011-05-20 15:22:21,918 - INFO - Processed 11200000 reads so far
2011-05-20 15:22:34,244 - INFO - Processed 11300000 reads so far
2011-05-20 15:22:46,021 - INFO - Processed 11400000 reads so far
2011-05-20 15:22:54,596 - INFO - Processed 11500000 reads so far
2011-05-20 15:23:03,391 - INFO - Processed 11600000 reads so far
2011-05-20 15:23:13,122 - INFO - Processed 11700000 reads so far
2011-05-20 15:23:22,741 - INFO - Processed 11800000 reads so far
2011-05-20 15:23:33,021 - INFO - Processed 11900000 reads so far
2011-05-20 15:23:43,196 - INFO - Processed 12000000 reads so far
2011-05-20 15:23:52,357 - INFO - Processed 12100000 reads so far
2011-05-20 15:24:01,123 - INFO - Processed 12200000 reads so far
2011-05-20 15:24:10,478 - INFO - Processed 12300000 reads so far
2011-05-20 15:24:20,772 - INFO - Processed 12400000 reads so far
2011-05-20 15:24:27,892 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:62990031-83010031
2011-05-20 15:24:29,489 - INFO - Processed 12500000 reads so far
2011-05-20 15:24:39,215 - INFO - Processed 12600000 reads so far
2011-05-20 15:24:48,813 - INFO - Processed 12700000 reads so far
2011-05-20 15:24:57,884 - INFO - Processed 12800000 reads so far
2011-05-20 15:25:07,487 - INFO - Processed 12900000 reads so far
2011-05-20 15:25:17,295 - INFO - Processed 13000000 reads so far
2011-05-20 15:25:25,586 - INFO - Processed 13100000 reads so far
2011-05-20 15:25:35,024 - INFO - Processed 13200000 reads so far
2011-05-20 15:25:45,553 - INFO - Processed 13300000 reads so far
2011-05-20 15:25:54,393 - INFO - Processed 13400000 reads so far
2011-05-20 15:26:03,448 - INFO - Processed 13500000 reads so far
2011-05-20 15:26:12,969 - INFO - Processed 13600000 reads so far
2011-05-20 15:26:22,474 - INFO - Processed 13700000 reads so far
2011-05-20 15:26:30,144 - INFO - Processed 13800000 reads so far
2011-05-20 15:26:31,157 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:82990061-103010061
2011-05-20 15:26:41,124 - INFO - Processed 13900000 reads so far
2011-05-20 15:26:50,284 - INFO - Processed 14000000 reads so far
2011-05-20 15:26:58,721 - INFO - Processed 14100000 reads so far
2011-05-20 15:27:08,094 - INFO - Processed 14200000 reads so far
2011-05-20 15:27:18,224 - INFO - Processed 14300000 reads so far
2011-05-20 15:27:26,867 - INFO - Processed 14400000 reads so far
2011-05-20 15:27:38,112 - INFO - Processed 14500000 reads so far
2011-05-20 15:27:48,298 - INFO - Processed 14600000 reads so far
2011-05-20 15:27:58,956 - INFO - Processed 14700000 reads so far
2011-05-20 15:28:09,152 - INFO - Processed 14800000 reads so far
2011-05-20 15:28:20,255 - INFO - Processed 14900000 reads so far
2011-05-20 15:28:32,216 - INFO - Processed 15000000 reads so far
2011-05-20 15:28:44,148 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr11:102990073-123010073
2011-05-20 15:28:44,428 - INFO - Processed 15100000 reads so far
2011-05-20 15:28:54,959 - INFO - Processed 15200000 reads so far
2011-05-20 15:29:05,140 - INFO - Processed 15300000 reads so far
2011-05-20 15:29:16,598 - INFO - Processed 15400000 reads so far
2011-05-20 15:29:26,014 - INFO - Processed 15500000 reads so far
2011-05-20 15:29:36,098 - INFO - Processed 15600000 reads so far
2011-05-20 15:29:47,020 - INFO - Processed 15700000 reads so far
2011-05-20 15:29:56,708 - INFO - Processed 15800000 reads so far
2011-05-20 15:30:06,717 - INFO - Processed 15900000 reads so far
2011-05-20 15:30:17,520 - INFO - Processed 16000000 reads so far
2011-05-20 15:30:26,994 - INFO - Processed 16100000 reads so far
2011-05-20 15:30:36,705 - INFO - Processed 16200000 reads so far
2011-05-20 15:30:46,947 - INFO - Processed 16300000 reads so far
2011-05-20 15:30:49,841 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:2990018-23010018
2011-05-20 15:30:54,637 - INFO - Processed 16400000 reads so far
2011-05-20 15:31:01,318 - INFO - Processed 16500000 reads so far
2011-05-20 15:31:09,181 - INFO - Processed 16600000 reads so far
2011-05-20 15:31:17,409 - INFO - Processed 16700000 reads so far
2011-05-20 15:31:26,072 - INFO - Processed 16800000 reads so far
2011-05-20 15:31:34,617 - INFO - Processed 16900000 reads so far
2011-05-20 15:31:43,082 - INFO - Processed 17000000 reads so far
2011-05-20 15:31:51,620 - INFO - Processed 17100000 reads so far
2011-05-20 15:31:59,338 - INFO - Processed 17200000 reads so far
2011-05-20 15:32:06,404 - INFO - Processed 17300000 reads so far
2011-05-20 15:32:14,757 - INFO - Processed 17400000 reads so far
2011-05-20 15:32:23,523 - INFO - Processed 17500000 reads so far
2011-05-20 15:32:31,773 - INFO - Processed 17600000 reads so far
2011-05-20 15:32:41,612 - INFO - Processed 17700000 reads so far
2011-05-20 15:32:52,040 - INFO - Processed 17800000 reads so far
2011-05-20 15:32:53,096 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:22990212-43010212
2011-05-20 15:33:00,399 - INFO - Processed 17900000 reads so far
2011-05-20 15:33:08,917 - INFO - Processed 18000000 reads so far
2011-05-20 15:33:18,508 - INFO - Processed 18100000 reads so far
2011-05-20 15:33:27,317 - INFO - Processed 18200000 reads so far
2011-05-20 15:33:36,800 - INFO - Processed 18300000 reads so far
2011-05-20 15:33:48,233 - INFO - Processed 18400000 reads so far
2011-05-20 15:33:59,467 - INFO - Processed 18500000 reads so far
2011-05-20 15:34:10,442 - INFO - Processed 18600000 reads so far
2011-05-20 15:34:18,730 - INFO - Processed 18700000 reads so far
2011-05-20 15:34:27,426 - INFO - Processed 18800000 reads so far
2011-05-20 15:34:35,880 - INFO - Processed 18900000 reads so far
2011-05-20 15:34:44,204 - INFO - Processed 19000000 reads so far
2011-05-20 15:34:46,654 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:42990225-63010225
2011-05-20 15:34:52,363 - INFO - Processed 19100000 reads so far
2011-05-20 15:35:01,045 - INFO - Processed 19200000 reads so far
2011-05-20 15:35:09,793 - INFO - Processed 19300000 reads so far
2011-05-20 15:35:18,081 - INFO - Processed 19400000 reads so far
2011-05-20 15:35:26,206 - INFO - Processed 19500000 reads so far
2011-05-20 15:35:33,780 - INFO - Processed 19600000 reads so far
2011-05-20 15:35:42,131 - INFO - Processed 19700000 reads so far
2011-05-20 15:35:50,528 - INFO - Processed 19800000 reads so far
2011-05-20 15:35:58,724 - INFO - Processed 19900000 reads so far
2011-05-20 15:36:07,345 - INFO - Processed 20000000 reads so far
2011-05-20 15:36:15,548 - INFO - Processed 20100000 reads so far
2011-05-20 15:36:23,903 - INFO - Processed 20200000 reads so far
2011-05-20 15:36:32,815 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:62990242-83010242
2011-05-20 15:36:33,254 - INFO - Processed 20300000 reads so far
2011-05-20 15:36:41,145 - INFO - Processed 20400000 reads so far
2011-05-20 15:36:49,438 - INFO - Processed 20500000 reads so far
2011-05-20 15:36:59,784 - INFO - Processed 20600000 reads so far
2011-05-20 15:37:08,519 - INFO - Processed 20700000 reads so far
2011-05-20 15:37:18,882 - INFO - Processed 20800000 reads so far
2011-05-20 15:37:28,744 - INFO - Processed 20900000 reads so far
2011-05-20 15:37:37,325 - INFO - Processed 21000000 reads so far
2011-05-20 15:37:46,120 - INFO - Processed 21100000 reads so far
2011-05-20 15:37:54,326 - INFO - Processed 21200000 reads so far
2011-05-20 15:38:04,163 - INFO - Processed 21300000 reads so far
2011-05-20 15:38:12,722 - INFO - Processed 21400000 reads so far
2011-05-20 15:38:20,907 - INFO - Processed 21500000 reads so far
2011-05-20 15:38:30,132 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:82990264-103010264
2011-05-20 15:38:30,211 - INFO - Processed 21600000 reads so far
2011-05-20 15:38:38,642 - INFO - Processed 21700000 reads so far
2011-05-20 15:38:48,404 - INFO - Processed 21800000 reads so far
2011-05-20 15:38:59,041 - INFO - Processed 21900000 reads so far
2011-05-20 15:39:08,504 - INFO - Processed 22000000 reads so far
2011-05-20 15:39:17,979 - INFO - Processed 22100000 reads so far
2011-05-20 15:39:26,513 - INFO - Processed 22200000 reads so far
2011-05-20 15:39:35,825 - INFO - Processed 22300000 reads so far
2011-05-20 15:39:44,415 - INFO - Processed 22400000 reads so far
2011-05-20 15:39:53,694 - INFO - Processed 22500000 reads so far
2011-05-20 15:40:02,214 - INFO - Processed 22600000 reads so far
2011-05-20 15:40:11,099 - INFO - Processed 22700000 reads so far
2011-05-20 15:40:21,316 - INFO - Processed 22800000 reads so far
2011-05-20 15:40:30,290 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr12:102990267-123010267
2011-05-20 15:40:31,383 - INFO - Processed 22900000 reads so far
2011-05-20 15:40:39,948 - INFO - Processed 23000000 reads so far
2011-05-20 15:40:47,823 - INFO - Processed 23100000 reads so far
2011-05-20 15:40:56,749 - INFO - Processed 23200000 reads so far
2011-05-20 15:41:06,179 - INFO - Processed 23300000 reads so far
2011-05-20 15:41:14,666 - INFO - Processed 23400000 reads so far
2011-05-20 15:41:22,965 - INFO - Processed 23500000 reads so far
2011-05-20 15:41:32,667 - INFO - Processed 23600000 reads so far
2011-05-20 15:41:40,900 - INFO - Processed 23700000 reads so far
2011-05-20 15:41:49,655 - INFO - Processed 23800000 reads so far
2011-05-20 15:41:59,988 - INFO - Processed 23900000 reads so far
2011-05-20 15:42:08,381 - INFO - Processed 24000000 reads so far
2011-05-20 15:42:18,981 - INFO - Processed 24100000 reads so far
2011-05-20 15:42:23,997 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:2990000-23010000
2011-05-20 15:42:29,379 - INFO - Processed 24200000 reads so far
2011-05-20 15:42:39,842 - INFO - Processed 24300000 reads so far
2011-05-20 15:42:50,118 - INFO - Processed 24400000 reads so far
2011-05-20 15:42:59,039 - INFO - Processed 24500000 reads so far
2011-05-20 15:43:07,800 - INFO - Processed 24600000 reads so far
2011-05-20 15:43:17,269 - INFO - Processed 24700000 reads so far
2011-05-20 15:43:27,083 - INFO - Processed 24800000 reads so far
2011-05-20 15:43:35,953 - INFO - Processed 24900000 reads so far
2011-05-20 15:43:45,952 - INFO - Processed 25000000 reads so far
2011-05-20 15:43:55,446 - INFO - Processed 25100000 reads so far
2011-05-20 15:44:04,016 - INFO - Processed 25200000 reads so far
2011-05-20 15:44:13,848 - INFO - Processed 25300000 reads so far
2011-05-20 15:44:23,637 - INFO - Processed 25400000 reads so far
2011-05-20 15:44:26,954 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:22990062-43010062
2011-05-20 15:44:32,240 - INFO - Processed 25500000 reads so far
2011-05-20 15:44:41,598 - INFO - Processed 25600000 reads so far
2011-05-20 15:44:50,882 - INFO - Processed 25700000 reads so far
2011-05-20 15:44:59,875 - INFO - Processed 25800000 reads so far
2011-05-20 15:45:09,535 - INFO - Processed 25900000 reads so far
2011-05-20 15:45:20,158 - INFO - Processed 26000000 reads so far
2011-05-20 15:45:28,375 - INFO - Processed 26100000 reads so far
2011-05-20 15:45:40,397 - INFO - Processed 26200000 reads so far
2011-05-20 15:45:51,922 - INFO - Processed 26300000 reads so far
2011-05-20 15:46:03,098 - INFO - Processed 26400000 reads so far
2011-05-20 15:46:13,347 - INFO - Processed 26500000 reads so far
2011-05-20 15:46:22,192 - INFO - Processed 26600000 reads so far
2011-05-20 15:46:31,317 - INFO - Processed 26700000 reads so far
2011-05-20 15:46:38,108 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:42990069-63010069
2011-05-20 15:46:39,170 - INFO - Processed 26800000 reads so far
2011-05-20 15:46:48,126 - INFO - Processed 26900000 reads so far
2011-05-20 15:46:57,297 - INFO - Processed 27000000 reads so far
2011-05-20 15:47:05,947 - INFO - Processed 27100000 reads so far
2011-05-20 15:47:13,335 - INFO - Processed 27200000 reads so far
2011-05-20 15:47:22,115 - INFO - Processed 27300000 reads so far
2011-05-20 15:47:30,364 - INFO - Processed 27400000 reads so far
2011-05-20 15:47:39,451 - INFO - Processed 27500000 reads so far
2011-05-20 15:47:49,721 - INFO - Processed 27600000 reads so far
2011-05-20 15:47:58,829 - INFO - Processed 27700000 reads so far
2011-05-20 15:48:05,904 - INFO - Processed 27800000 reads so far
2011-05-20 15:48:14,736 - INFO - Processed 27900000 reads so far
2011-05-20 15:48:24,655 - INFO - Processed 28000000 reads so far
2011-05-20 15:48:32,352 - INFO - Processed 28100000 reads so far
2011-05-20 15:48:34,003 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:62990080-83010080
2011-05-20 15:48:42,086 - INFO - Processed 28200000 reads so far
2011-05-20 15:48:50,764 - INFO - Processed 28300000 reads so far
2011-05-20 15:49:00,023 - INFO - Processed 28400000 reads so far
2011-05-20 15:49:10,246 - INFO - Processed 28500000 reads so far
2011-05-20 15:49:18,515 - INFO - Processed 28600000 reads so far
2011-05-20 15:49:25,944 - INFO - Processed 28700000 reads so far
2011-05-20 15:49:33,837 - INFO - Processed 28800000 reads so far
2011-05-20 15:49:42,474 - INFO - Processed 28900000 reads so far
2011-05-20 15:49:52,345 - INFO - Processed 29000000 reads so far
2011-05-20 15:50:00,990 - INFO - Processed 29100000 reads so far
2011-05-20 15:50:08,823 - INFO - Processed 29200000 reads so far
2011-05-20 15:50:16,532 - INFO - Processed 29300000 reads so far
2011-05-20 15:50:24,744 - INFO - Processed 29400000 reads so far
2011-05-20 15:50:27,981 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:82990116-103010116
2011-05-20 15:50:33,941 - INFO - Processed 29500000 reads so far
2011-05-20 15:50:42,384 - INFO - Processed 29600000 reads so far
2011-05-20 15:50:50,882 - INFO - Processed 29700000 reads so far
2011-05-20 15:50:59,717 - INFO - Processed 29800000 reads so far
2011-05-20 15:51:09,403 - INFO - Processed 29900000 reads so far
2011-05-20 15:51:20,025 - INFO - Processed 30000000 reads so far
2011-05-20 15:51:29,106 - INFO - Processed 30100000 reads so far
2011-05-20 15:51:38,156 - INFO - Processed 30200000 reads so far
2011-05-20 15:51:48,418 - INFO - Processed 30300000 reads so far
2011-05-20 15:51:56,877 - INFO - Processed 30400000 reads so far
2011-05-20 15:52:06,044 - INFO - Processed 30500000 reads so far
2011-05-20 15:52:15,076 - INFO - Processed 30600000 reads so far
2011-05-20 15:52:22,992 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13:102990157-123010157
2011-05-20 15:52:23,430 - INFO - Processed 30700000 reads so far
2011-05-20 15:52:31,770 - INFO - Processed 30800000 reads so far
2011-05-20 15:52:39,636 - INFO - Processed 30900000 reads so far
2011-05-20 15:52:48,037 - INFO - Processed 31000000 reads so far
2011-05-20 15:52:57,050 - INFO - Processed 31100000 reads so far
2011-05-20 15:53:05,687 - INFO - Processed 31200000 reads so far
2011-05-20 15:53:13,911 - INFO - Processed 31300000 reads so far
2011-05-20 15:53:23,377 - INFO - Processed 31400000 reads so far
2011-05-20 15:53:31,792 - INFO - Processed 31500000 reads so far
2011-05-20 15:53:40,766 - INFO - Processed 31600000 reads so far
2011-05-20 15:53:49,496 - INFO - Processed 31700000 reads so far
2011-05-20 15:53:59,175 - INFO - Processed 31800000 reads so far
2011-05-20 15:54:01,670 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr13_random:0-20010000
2011-05-20 15:54:02,654 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:2990010-23010010
2011-05-20 15:54:07,610 - INFO - Processed 31900000 reads so far
2011-05-20 15:54:16,417 - INFO - Processed 32000000 reads so far
2011-05-20 15:54:25,770 - INFO - Processed 32100000 reads so far
2011-05-20 15:54:33,906 - INFO - Processed 32200000 reads so far
2011-05-20 15:54:42,556 - INFO - Processed 32300000 reads so far
2011-05-20 15:54:51,427 - INFO - Processed 32400000 reads so far
2011-05-20 15:55:00,403 - INFO - Processed 32500000 reads so far
2011-05-20 15:55:07,803 - INFO - Processed 32600000 reads so far
2011-05-20 15:55:16,399 - INFO - Processed 32700000 reads so far
2011-05-20 15:55:25,350 - INFO - Processed 32800000 reads so far
2011-05-20 15:55:32,742 - INFO - Processed 32900000 reads so far
2011-05-20 15:55:40,348 - INFO - Processed 33000000 reads so far
2011-05-20 15:55:49,714 - INFO - Processed 33100000 reads so far
2011-05-20 15:55:57,435 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:22990031-43010031
2011-05-20 15:55:59,052 - INFO - Processed 33200000 reads so far
2011-05-20 15:56:06,924 - INFO - Processed 33300000 reads so far
2011-05-20 15:56:16,412 - INFO - Processed 33400000 reads so far
2011-05-20 15:56:23,704 - INFO - Processed 33500000 reads so far
2011-05-20 15:56:32,294 - INFO - Processed 33600000 reads so far
2011-05-20 15:56:39,720 - INFO - Processed 33700000 reads so far
2011-05-20 15:56:49,737 - INFO - Processed 33800000 reads so far
2011-05-20 15:56:57,211 - INFO - Processed 33900000 reads so far
2011-05-20 15:57:04,929 - INFO - Processed 34000000 reads so far
2011-05-20 15:57:12,664 - INFO - Processed 34100000 reads so far
2011-05-20 15:57:20,985 - INFO - Processed 34200000 reads so far
2011-05-20 15:57:28,577 - INFO - Processed 34300000 reads so far
2011-05-20 15:57:37,767 - INFO - Processed 34400000 reads so far
2011-05-20 15:57:45,119 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:42990042-63010042
2011-05-20 15:57:45,195 - INFO - Processed 34500000 reads so far
2011-05-20 15:57:52,863 - INFO - Processed 34600000 reads so far
2011-05-20 15:58:01,183 - INFO - Processed 34700000 reads so far
2011-05-20 15:58:08,585 - INFO - Processed 34800000 reads so far
2011-05-20 15:58:15,932 - INFO - Processed 34900000 reads so far
2011-05-20 15:58:24,147 - INFO - Processed 35000000 reads so far
2011-05-20 15:58:32,429 - INFO - Processed 35100000 reads so far
2011-05-20 15:58:39,944 - INFO - Processed 35200000 reads so far
2011-05-20 15:58:48,154 - INFO - Processed 35300000 reads so far
2011-05-20 15:58:56,958 - INFO - Processed 35400000 reads so far
2011-05-20 15:59:05,405 - INFO - Processed 35500000 reads so far
2011-05-20 15:59:12,717 - INFO - Processed 35600000 reads so far
2011-05-20 15:59:20,137 - INFO - Processed 35700000 reads so far
2011-05-20 15:59:28,498 - INFO - Processed 35800000 reads so far
2011-05-20 15:59:32,763 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:62990046-83010046
2011-05-20 15:59:36,625 - INFO - Processed 35900000 reads so far
2011-05-20 15:59:43,810 - INFO - Processed 36000000 reads so far
2011-05-20 15:59:51,526 - INFO - Processed 36100000 reads so far
2011-05-20 15:59:59,647 - INFO - Processed 36200000 reads so far
2011-05-20 16:00:07,339 - INFO - Processed 36300000 reads so far
2011-05-20 16:00:14,772 - INFO - Processed 36400000 reads so far
2011-05-20 16:00:22,707 - INFO - Processed 36500000 reads so far
2011-05-20 16:00:30,872 - INFO - Processed 36600000 reads so far
2011-05-20 16:00:39,767 - INFO - Processed 36700000 reads so far
2011-05-20 16:00:47,863 - INFO - Processed 36800000 reads so far
2011-05-20 16:00:56,191 - INFO - Processed 36900000 reads so far
2011-05-20 16:01:04,874 - INFO - Processed 37000000 reads so far
2011-05-20 16:01:12,068 - INFO - Processed 37100000 reads so far
2011-05-20 16:01:18,727 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:82990063-103010063
2011-05-20 16:01:19,941 - INFO - Processed 37200000 reads so far
2011-05-20 16:01:27,568 - INFO - Processed 37300000 reads so far
2011-05-20 16:01:35,655 - INFO - Processed 37400000 reads so far
2011-05-20 16:01:43,207 - INFO - Processed 37500000 reads so far
2011-05-20 16:01:52,161 - INFO - Processed 37600000 reads so far
2011-05-20 16:01:59,756 - INFO - Processed 37700000 reads so far
2011-05-20 16:02:07,960 - INFO - Processed 37800000 reads so far
2011-05-20 16:02:15,835 - INFO - Processed 37900000 reads so far
2011-05-20 16:02:23,280 - INFO - Processed 38000000 reads so far
2011-05-20 16:02:30,799 - INFO - Processed 38100000 reads so far
2011-05-20 16:02:39,173 - INFO - Processed 38200000 reads so far
2011-05-20 16:02:47,014 - INFO - Processed 38300000 reads so far
2011-05-20 16:02:53,665 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:102990079-123010079
2011-05-20 16:02:54,896 - INFO - Processed 38400000 reads so far
2011-05-20 16:03:03,413 - INFO - Processed 38500000 reads so far
2011-05-20 16:03:10,789 - INFO - Processed 38600000 reads so far
2011-05-20 16:03:17,953 - INFO - Processed 38700000 reads so far
2011-05-20 16:03:25,550 - INFO - Processed 38800000 reads so far
2011-05-20 16:03:33,372 - INFO - Processed 38900000 reads so far
2011-05-20 16:03:41,378 - INFO - Processed 39000000 reads so far
2011-05-20 16:03:48,795 - INFO - Processed 39100000 reads so far
2011-05-20 16:03:56,952 - INFO - Processed 39200000 reads so far
2011-05-20 16:04:04,570 - INFO - Processed 39300000 reads so far
2011-05-20 16:04:12,947 - INFO - Processed 39400000 reads so far
2011-05-20 16:04:21,336 - INFO - Processed 39500000 reads so far
2011-05-20 16:04:28,585 - INFO - Processed 39600000 reads so far
2011-05-20 16:04:32,677 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr14:122990080-143010080
2011-05-20 16:04:36,106 - INFO - Processed 39700000 reads so far
2011-05-20 16:04:42,871 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:2990012-23010012
2011-05-20 16:04:43,591 - INFO - Processed 39800000 reads so far
2011-05-20 16:04:51,523 - INFO - Processed 39900000 reads so far
2011-05-20 16:04:58,812 - INFO - Processed 40000000 reads so far
2011-05-20 16:05:08,377 - INFO - Processed 40100000 reads so far
2011-05-20 16:05:16,162 - INFO - Processed 40200000 reads so far
2011-05-20 16:05:23,195 - INFO - Processed 40300000 reads so far
2011-05-20 16:05:30,623 - INFO - Processed 40400000 reads so far
2011-05-20 16:05:38,781 - INFO - Processed 40500000 reads so far
2011-05-20 16:05:46,626 - INFO - Processed 40600000 reads so far
2011-05-20 16:05:54,218 - INFO - Processed 40700000 reads so far
2011-05-20 16:06:02,476 - INFO - Processed 40800000 reads so far
2011-05-20 16:06:11,562 - INFO - Processed 40900000 reads so far
2011-05-20 16:06:18,959 - INFO - Processed 41000000 reads so far
2011-05-20 16:06:22,979 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:22990024-43010024
2011-05-20 16:06:26,710 - INFO - Processed 41100000 reads so far
2011-05-20 16:06:34,508 - INFO - Processed 41200000 reads so far
2011-05-20 16:06:42,070 - INFO - Processed 41300000 reads so far
2011-05-20 16:06:49,979 - INFO - Processed 41400000 reads so far
2011-05-20 16:06:57,853 - INFO - Processed 41500000 reads so far
2011-05-20 16:07:05,466 - INFO - Processed 41600000 reads so far
2011-05-20 16:07:13,174 - INFO - Processed 41700000 reads so far
2011-05-20 16:07:20,495 - INFO - Processed 41800000 reads so far
2011-05-20 16:07:28,371 - INFO - Processed 41900000 reads so far
2011-05-20 16:07:38,397 - INFO - Processed 42000000 reads so far
2011-05-20 16:07:46,643 - INFO - Processed 42100000 reads so far
2011-05-20 16:07:54,421 - INFO - Processed 42200000 reads so far
2011-05-20 16:08:02,010 - INFO - Processed 42300000 reads so far
2011-05-20 16:08:07,090 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:42990032-63010032
2011-05-20 16:08:09,479 - INFO - Processed 42400000 reads so far
2011-05-20 16:08:16,699 - INFO - Processed 42500000 reads so far
2011-05-20 16:08:24,205 - INFO - Processed 42600000 reads so far
2011-05-20 16:08:31,808 - INFO - Processed 42700000 reads so far
2011-05-20 16:08:39,598 - INFO - Processed 42800000 reads so far
2011-05-20 16:08:47,053 - INFO - Processed 42900000 reads so far
2011-05-20 16:08:54,993 - INFO - Processed 43000000 reads so far
2011-05-20 16:09:02,711 - INFO - Processed 43100000 reads so far
2011-05-20 16:09:10,703 - INFO - Processed 43200000 reads so far
2011-05-20 16:09:18,737 - INFO - Processed 43300000 reads so far
2011-05-20 16:09:28,327 - INFO - Processed 43400000 reads so far
2011-05-20 16:09:36,663 - INFO - Processed 43500000 reads so far
2011-05-20 16:09:44,570 - INFO - Processed 43600000 reads so far
2011-05-20 16:09:49,232 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:62990051-83010051
2011-05-20 16:09:52,431 - INFO - Processed 43700000 reads so far
2011-05-20 16:09:59,934 - INFO - Processed 43800000 reads so far
2011-05-20 16:10:07,590 - INFO - Processed 43900000 reads so far
2011-05-20 16:10:15,208 - INFO - Processed 44000000 reads so far
2011-05-20 16:10:22,507 - INFO - Processed 44100000 reads so far
2011-05-20 16:10:30,519 - INFO - Processed 44200000 reads so far
2011-05-20 16:10:37,919 - INFO - Processed 44300000 reads so far
2011-05-20 16:10:45,451 - INFO - Processed 44400000 reads so far
2011-05-20 16:10:52,810 - INFO - Processed 44500000 reads so far
2011-05-20 16:11:01,034 - INFO - Processed 44600000 reads so far
2011-05-20 16:11:10,221 - INFO - Processed 44700000 reads so far
2011-05-20 16:11:18,554 - INFO - Processed 44800000 reads so far
2011-05-20 16:11:26,437 - INFO - Processed 44900000 reads so far
2011-05-20 16:11:34,266 - INFO - Processed 45000000 reads so far
2011-05-20 16:11:36,097 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:82990071-103010071
2011-05-20 16:11:42,887 - INFO - Processed 45100000 reads so far
2011-05-20 16:11:51,404 - INFO - Processed 45200000 reads so far
2011-05-20 16:11:59,494 - INFO - Processed 45300000 reads so far
2011-05-20 16:12:06,885 - INFO - Processed 45400000 reads so far
2011-05-20 16:12:15,692 - INFO - Processed 45500000 reads so far
2011-05-20 16:12:23,655 - INFO - Processed 45600000 reads so far
2011-05-20 16:12:31,908 - INFO - Processed 45700000 reads so far
2011-05-20 16:12:40,118 - INFO - Processed 45800000 reads so far
2011-05-20 16:12:48,315 - INFO - Processed 45900000 reads so far
2011-05-20 16:12:56,751 - INFO - Processed 46000000 reads so far
2011-05-20 16:13:04,369 - INFO - Processed 46100000 reads so far
2011-05-20 16:13:13,137 - INFO - Processed 46200000 reads so far
2011-05-20 16:13:21,496 - INFO - Processed 46300000 reads so far
2011-05-20 16:13:25,223 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr15:102990081-123010081
2011-05-20 16:13:27,821 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:2990003-23010003
2011-05-20 16:13:29,693 - INFO - Processed 46400000 reads so far
2011-05-20 16:13:38,020 - INFO - Processed 46500000 reads so far
2011-05-20 16:13:46,434 - INFO - Processed 46600000 reads so far
2011-05-20 16:13:53,864 - INFO - Processed 46700000 reads so far
2011-05-20 16:14:01,758 - INFO - Processed 46800000 reads so far
2011-05-20 16:14:10,853 - INFO - Processed 46900000 reads so far
2011-05-20 16:14:20,057 - INFO - Processed 47000000 reads so far
2011-05-20 16:14:28,276 - INFO - Processed 47100000 reads so far
2011-05-20 16:14:35,924 - INFO - Processed 47200000 reads so far
2011-05-20 16:14:43,520 - INFO - Processed 47300000 reads so far
2011-05-20 16:14:50,995 - INFO - Processed 47400000 reads so far
2011-05-20 16:14:58,328 - INFO - Processed 47500000 reads so far
2011-05-20 16:15:05,870 - INFO - Processed 47600000 reads so far
2011-05-20 16:15:13,395 - INFO - Processed 47700000 reads so far
2011-05-20 16:15:18,729 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:22990007-43010007
2011-05-20 16:15:20,725 - INFO - Processed 47800000 reads so far
2011-05-20 16:15:28,185 - INFO - Processed 47900000 reads so far
2011-05-20 16:15:35,572 - INFO - Processed 48000000 reads so far
2011-05-20 16:15:43,046 - INFO - Processed 48100000 reads so far
2011-05-20 16:15:49,932 - INFO - Processed 48200000 reads so far
2011-05-20 16:15:57,150 - INFO - Processed 48300000 reads so far
2011-05-20 16:16:04,907 - INFO - Processed 48400000 reads so far
2011-05-20 16:16:12,331 - INFO - Processed 48500000 reads so far
2011-05-20 16:16:20,584 - INFO - Processed 48600000 reads so far
2011-05-20 16:16:28,358 - INFO - Processed 48700000 reads so far
2011-05-20 16:16:37,539 - INFO - Processed 48800000 reads so far
2011-05-20 16:16:45,081 - INFO - Processed 48900000 reads so far
2011-05-20 16:16:52,165 - INFO - Processed 49000000 reads so far
2011-05-20 16:16:59,379 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:42990047-63010047
2011-05-20 16:16:59,710 - INFO - Processed 49100000 reads so far
2011-05-20 16:17:07,330 - INFO - Processed 49200000 reads so far
2011-05-20 16:17:15,219 - INFO - Processed 49300000 reads so far
2011-05-20 16:17:22,490 - INFO - Processed 49400000 reads so far
2011-05-20 16:17:29,800 - INFO - Processed 49500000 reads so far
2011-05-20 16:17:39,625 - INFO - Processed 49600000 reads so far
2011-05-20 16:17:47,767 - INFO - Processed 49700000 reads so far
2011-05-20 16:17:55,122 - INFO - Processed 49800000 reads so far
2011-05-20 16:18:02,384 - INFO - Processed 49900000 reads so far
2011-05-20 16:18:09,878 - INFO - Processed 50000000 reads so far
2011-05-20 16:18:17,541 - INFO - Processed 50100000 reads so far
2011-05-20 16:18:24,749 - INFO - Processed 50200000 reads so far
2011-05-20 16:18:32,964 - INFO - Processed 50300000 reads so far
2011-05-20 16:18:38,926 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:62990068-83010068
2011-05-20 16:18:40,602 - INFO - Processed 50400000 reads so far
2011-05-20 16:18:48,708 - INFO - Processed 50500000 reads so far
2011-05-20 16:18:57,389 - INFO - Processed 50600000 reads so far
2011-05-20 16:19:05,631 - INFO - Processed 50700000 reads so far
2011-05-20 16:19:13,920 - INFO - Processed 50800000 reads so far
2011-05-20 16:19:21,907 - INFO - Processed 50900000 reads so far
2011-05-20 16:19:29,694 - INFO - Processed 51000000 reads so far
2011-05-20 16:19:36,873 - INFO - Processed 51100000 reads so far
2011-05-20 16:19:44,969 - INFO - Processed 51200000 reads so far
2011-05-20 16:19:52,183 - INFO - Processed 51300000 reads so far
2011-05-20 16:19:59,996 - INFO - Processed 51400000 reads so far
2011-05-20 16:20:07,128 - INFO - Processed 51500000 reads so far
2011-05-20 16:20:14,443 - INFO - Processed 51600000 reads so far
2011-05-20 16:20:15,145 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16:82990071-103010071
2011-05-20 16:20:21,926 - INFO - Processed 51700000 reads so far
2011-05-20 16:20:29,384 - INFO - Processed 51800000 reads so far
2011-05-20 16:20:37,092 - INFO - Processed 51900000 reads so far
2011-05-20 16:20:44,367 - INFO - Processed 52000000 reads so far
2011-05-20 16:20:51,727 - INFO - Processed 52100000 reads so far
2011-05-20 16:20:59,682 - INFO - Processed 52200000 reads so far
2011-05-20 16:21:07,240 - INFO - Processed 52300000 reads so far
2011-05-20 16:21:14,713 - INFO - Processed 52400000 reads so far
2011-05-20 16:21:22,636 - INFO - Processed 52500000 reads so far
2011-05-20 16:21:29,972 - INFO - Processed 52600000 reads so far
2011-05-20 16:21:31,226 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr16_random:0-20010093
2011-05-20 16:21:31,254 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:2989981-23009981
2011-05-20 16:21:37,441 - INFO - Processed 52700000 reads so far
2011-05-20 16:21:45,289 - INFO - Processed 52800000 reads so far
2011-05-20 16:21:52,751 - INFO - Processed 52900000 reads so far
2011-05-20 16:22:00,970 - INFO - Processed 53000000 reads so far
2011-05-20 16:22:08,743 - INFO - Processed 53100000 reads so far
2011-05-20 16:22:16,811 - INFO - Processed 53200000 reads so far
2011-05-20 16:22:24,330 - INFO - Processed 53300000 reads so far
2011-05-20 16:22:33,022 - INFO - Processed 53400000 reads so far
2011-05-20 16:22:40,862 - INFO - Processed 53500000 reads so far
2011-05-20 16:22:48,120 - INFO - Processed 53600000 reads so far
2011-05-20 16:22:55,318 - INFO - Processed 53700000 reads so far
2011-05-20 16:23:02,812 - INFO - Processed 53800000 reads so far
2011-05-20 16:23:10,171 - INFO - Processed 53900000 reads so far
2011-05-20 16:23:13,294 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:22989992-43009992
2011-05-20 16:23:17,284 - INFO - Processed 54000000 reads so far
2011-05-20 16:23:24,748 - INFO - Processed 54100000 reads so far
2011-05-20 16:23:32,370 - INFO - Processed 54200000 reads so far
2011-05-20 16:23:41,930 - INFO - Processed 54300000 reads so far
2011-05-20 16:23:49,969 - INFO - Processed 54400000 reads so far
2011-05-20 16:23:57,170 - INFO - Processed 54500000 reads so far
2011-05-20 16:24:04,607 - INFO - Processed 54600000 reads so far
2011-05-20 16:24:13,539 - INFO - Processed 54700000 reads so far
2011-05-20 16:24:21,348 - INFO - Processed 54800000 reads so far
2011-05-20 16:24:29,224 - INFO - Processed 54900000 reads so far
2011-05-20 16:24:36,735 - INFO - Processed 55000000 reads so far
2011-05-20 16:24:44,320 - INFO - Processed 55100000 reads so far
2011-05-20 16:24:51,112 - INFO - Processed 55200000 reads so far
2011-05-20 16:24:58,200 - INFO - Processed 55300000 reads so far
2011-05-20 16:24:59,864 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:42989998-63009998
2011-05-20 16:25:05,879 - INFO - Processed 55400000 reads so far
2011-05-20 16:25:14,282 - INFO - Processed 55500000 reads so far
2011-05-20 16:25:21,735 - INFO - Processed 55600000 reads so far
2011-05-20 16:25:29,321 - INFO - Processed 55700000 reads so far
2011-05-20 16:25:38,176 - INFO - Processed 55800000 reads so far
2011-05-20 16:25:45,677 - INFO - Processed 55900000 reads so far
2011-05-20 16:25:53,434 - INFO - Processed 56000000 reads so far
2011-05-20 16:26:00,654 - INFO - Processed 56100000 reads so far
2011-05-20 16:26:08,499 - INFO - Processed 56200000 reads so far
2011-05-20 16:26:19,426 - INFO - Processed 56300000 reads so far
2011-05-20 16:26:26,437 - INFO - Processed 56400000 reads so far
2011-05-20 16:26:34,956 - INFO - Processed 56500000 reads so far
2011-05-20 16:26:42,733 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:62990036-83010036
2011-05-20 16:26:43,123 - INFO - Processed 56600000 reads so far
2011-05-20 16:26:51,128 - INFO - Processed 56700000 reads so far
2011-05-20 16:26:58,240 - INFO - Processed 56800000 reads so far
2011-05-20 16:27:05,869 - INFO - Processed 56900000 reads so far
2011-05-20 16:27:13,495 - INFO - Processed 57000000 reads so far
2011-05-20 16:27:20,679 - INFO - Processed 57100000 reads so far
2011-05-20 16:27:28,988 - INFO - Processed 57200000 reads so far
2011-05-20 16:27:36,259 - INFO - Processed 57300000 reads so far
2011-05-20 16:27:43,350 - INFO - Processed 57400000 reads so far
2011-05-20 16:27:52,360 - INFO - Processed 57500000 reads so far
2011-05-20 16:27:59,726 - INFO - Processed 57600000 reads so far
2011-05-20 16:28:07,285 - INFO - Processed 57700000 reads so far
2011-05-20 16:28:14,559 - INFO - Processed 57800000 reads so far
2011-05-20 16:28:22,040 - INFO - Processed 57900000 reads so far
2011-05-20 16:28:22,803 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17:82990121-103010121
2011-05-20 16:28:29,167 - INFO - Processed 58000000 reads so far
2011-05-20 16:28:38,288 - INFO - Processed 58100000 reads so far
2011-05-20 16:28:45,719 - INFO - Processed 58200000 reads so far
2011-05-20 16:28:53,421 - INFO - Processed 58300000 reads so far
2011-05-20 16:29:00,892 - INFO - Processed 58400000 reads so far
2011-05-20 16:29:08,280 - INFO - Processed 58500000 reads so far
2011-05-20 16:29:15,801 - INFO - Processed 58600000 reads so far
2011-05-20 16:29:23,757 - INFO - Processed 58700000 reads so far
2011-05-20 16:29:24,293 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr17_random:0-20010007
2011-05-20 16:29:25,700 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:2989999-23009999
2011-05-20 16:29:30,575 - INFO - Processed 58800000 reads so far
2011-05-20 16:29:38,094 - INFO - Processed 58900000 reads so far
2011-05-20 16:29:45,607 - INFO - Processed 59000000 reads so far
2011-05-20 16:29:53,529 - INFO - Processed 59100000 reads so far
2011-05-20 16:30:01,271 - INFO - Processed 59200000 reads so far
2011-05-20 16:30:08,679 - INFO - Processed 59300000 reads so far
2011-05-20 16:30:16,312 - INFO - Processed 59400000 reads so far
2011-05-20 16:30:23,771 - INFO - Processed 59500000 reads so far
2011-05-20 16:30:30,860 - INFO - Processed 59600000 reads so far
2011-05-20 16:30:38,122 - INFO - Processed 59700000 reads so far
2011-05-20 16:30:46,324 - INFO - Processed 59800000 reads so far
2011-05-20 16:30:55,437 - INFO - Processed 59900000 reads so far
2011-05-20 16:31:04,770 - INFO - Processed 60000000 reads so far
2011-05-20 16:31:12,245 - INFO - Processed 60100000 reads so far
2011-05-20 16:31:12,334 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:22990030-43010030
2011-05-20 16:31:20,362 - INFO - Processed 60200000 reads so far
2011-05-20 16:31:31,917 - INFO - Processed 60300000 reads so far
2011-05-20 16:31:39,186 - INFO - Processed 60400000 reads so far
2011-05-20 16:31:46,603 - INFO - Processed 60500000 reads so far
2011-05-20 16:31:54,196 - INFO - Processed 60600000 reads so far
2011-05-20 16:32:01,374 - INFO - Processed 60700000 reads so far
2011-05-20 16:32:08,733 - INFO - Processed 60800000 reads so far
2011-05-20 16:32:15,846 - INFO - Processed 60900000 reads so far
2011-05-20 16:32:23,874 - INFO - Processed 61000000 reads so far
2011-05-20 16:32:30,980 - INFO - Processed 61100000 reads so far
2011-05-20 16:32:38,040 - INFO - Processed 61200000 reads so far
2011-05-20 16:32:45,577 - INFO - Processed 61300000 reads so far
2011-05-20 16:32:53,142 - INFO - Processed 61400000 reads so far
2011-05-20 16:32:55,946 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:42990041-63010041
2011-05-20 16:33:02,019 - INFO - Processed 61500000 reads so far
2011-05-20 16:33:09,853 - INFO - Processed 61600000 reads so far
2011-05-20 16:33:17,287 - INFO - Processed 61700000 reads so far
2011-05-20 16:33:24,511 - INFO - Processed 61800000 reads so far
2011-05-20 16:33:31,840 - INFO - Processed 61900000 reads so far
2011-05-20 16:33:39,455 - INFO - Processed 62000000 reads so far
2011-05-20 16:33:46,901 - INFO - Processed 62100000 reads so far
2011-05-20 16:33:54,665 - INFO - Processed 62200000 reads so far
2011-05-20 16:34:02,231 - INFO - Processed 62300000 reads so far
2011-05-20 16:34:09,723 - INFO - Processed 62400000 reads so far
2011-05-20 16:34:18,099 - INFO - Processed 62500000 reads so far
2011-05-20 16:34:26,229 - INFO - Processed 62600000 reads so far
2011-05-20 16:34:33,535 - INFO - Processed 62700000 reads so far
2011-05-20 16:34:36,294 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:62990043-83010043
2011-05-20 16:34:40,687 - INFO - Processed 62800000 reads so far
2011-05-20 16:34:48,608 - INFO - Processed 62900000 reads so far
2011-05-20 16:34:56,364 - INFO - Processed 63000000 reads so far
2011-05-20 16:35:04,509 - INFO - Processed 63100000 reads so far
2011-05-20 16:35:11,990 - INFO - Processed 63200000 reads so far
2011-05-20 16:35:20,741 - INFO - Processed 63300000 reads so far
2011-05-20 16:35:29,050 - INFO - Processed 63400000 reads so far
2011-05-20 16:35:36,713 - INFO - Processed 63500000 reads so far
2011-05-20 16:35:44,026 - INFO - Processed 63600000 reads so far
2011-05-20 16:35:51,093 - INFO - Processed 63700000 reads so far
2011-05-20 16:35:58,421 - INFO - Processed 63800000 reads so far
2011-05-20 16:36:05,326 - INFO - Processed 63900000 reads so far
2011-05-20 16:36:12,350 - INFO - Processed 64000000 reads so far
2011-05-20 16:36:16,790 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr18:82990050-103010050
2011-05-20 16:36:19,750 - INFO - Processed 64100000 reads so far
2011-05-20 16:36:26,726 - INFO - Processed 64200000 reads so far
2011-05-20 16:36:33,718 - INFO - Processed 64300000 reads so far
2011-05-20 16:36:41,135 - INFO - Processed 64400000 reads so far
2011-05-20 16:36:48,336 - INFO - Processed 64500000 reads so far
2011-05-20 16:36:52,934 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:2990069-23010069
2011-05-20 16:36:55,444 - INFO - Processed 64600000 reads so far
2011-05-20 16:37:03,020 - INFO - Processed 64700000 reads so far
2011-05-20 16:37:10,169 - INFO - Processed 64800000 reads so far
2011-05-20 16:37:17,527 - INFO - Processed 64900000 reads so far
2011-05-20 16:37:25,175 - INFO - Processed 65000000 reads so far
2011-05-20 16:37:32,518 - INFO - Processed 65100000 reads so far
2011-05-20 16:37:39,665 - INFO - Processed 65200000 reads so far
2011-05-20 16:37:47,038 - INFO - Processed 65300000 reads so far
2011-05-20 16:37:54,708 - INFO - Processed 65400000 reads so far
2011-05-20 16:38:02,080 - INFO - Processed 65500000 reads so far
2011-05-20 16:38:09,049 - INFO - Processed 65600000 reads so far
2011-05-20 16:38:16,045 - INFO - Processed 65700000 reads so far
2011-05-20 16:38:23,158 - INFO - Processed 65800000 reads so far
2011-05-20 16:38:26,448 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:22990078-43010078
2011-05-20 16:38:30,257 - INFO - Processed 65900000 reads so far
2011-05-20 16:38:37,476 - INFO - Processed 66000000 reads so far
2011-05-20 16:38:44,495 - INFO - Processed 66100000 reads so far
2011-05-20 16:38:51,756 - INFO - Processed 66200000 reads so far
2011-05-20 16:38:58,604 - INFO - Processed 66300000 reads so far
2011-05-20 16:39:05,547 - INFO - Processed 66400000 reads so far
2011-05-20 16:39:12,497 - INFO - Processed 66500000 reads so far
2011-05-20 16:39:19,509 - INFO - Processed 66600000 reads so far
2011-05-20 16:39:26,712 - INFO - Processed 66700000 reads so far
2011-05-20 16:39:33,672 - INFO - Processed 66800000 reads so far
2011-05-20 16:39:41,398 - INFO - Processed 66900000 reads so far
2011-05-20 16:39:48,659 - INFO - Processed 67000000 reads so far
2011-05-20 16:39:55,788 - INFO - Processed 67100000 reads so far
2011-05-20 16:40:00,608 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr19:42990081-63010081
2011-05-20 16:40:02,914 - INFO - Processed 67200000 reads so far
2011-05-20 16:40:10,095 - INFO - Processed 67300000 reads so far
2011-05-20 16:40:17,728 - INFO - Processed 67400000 reads so far
2011-05-20 16:40:25,494 - INFO - Processed 67500000 reads so far
2011-05-20 16:40:32,998 - INFO - Processed 67600000 reads so far
2011-05-20 16:40:40,409 - INFO - Processed 67700000 reads so far
2011-05-20 16:40:47,496 - INFO - Processed 67800000 reads so far
2011-05-20 16:40:54,734 - INFO - Processed 67900000 reads so far
2011-05-20 16:41:02,061 - INFO - Processed 68000000 reads so far
2011-05-20 16:41:09,065 - INFO - Processed 68100000 reads so far
2011-05-20 16:41:16,649 - INFO - Processed 68200000 reads so far
2011-05-20 16:41:24,019 - INFO - Processed 68300000 reads so far
2011-05-20 16:41:30,166 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:2989997-23009997
2011-05-20 16:41:31,418 - INFO - Processed 68400000 reads so far
2011-05-20 16:41:38,517 - INFO - Processed 68500000 reads so far
2011-05-20 16:41:45,415 - INFO - Processed 68600000 reads so far
2011-05-20 16:41:52,721 - INFO - Processed 68700000 reads so far
2011-05-20 16:42:00,072 - INFO - Processed 68800000 reads so far
2011-05-20 16:42:07,000 - INFO - Processed 68900000 reads so far
2011-05-20 16:42:14,213 - INFO - Processed 69000000 reads so far
2011-05-20 16:42:21,354 - INFO - Processed 69100000 reads so far
2011-05-20 16:42:28,935 - INFO - Processed 69200000 reads so far
2011-05-20 16:42:35,885 - INFO - Processed 69300000 reads so far
2011-05-20 16:42:42,983 - INFO - Processed 69400000 reads so far
2011-05-20 16:42:50,099 - INFO - Processed 69500000 reads so far
2011-05-20 16:42:57,386 - INFO - Processed 69600000 reads so far
2011-05-20 16:43:02,750 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:22990010-43010010
2011-05-20 16:43:04,283 - INFO - Processed 69700000 reads so far
2011-05-20 16:43:10,928 - INFO - Processed 69800000 reads so far
2011-05-20 16:43:17,958 - INFO - Processed 69900000 reads so far
2011-05-20 16:43:25,028 - INFO - Processed 70000000 reads so far
2011-05-20 16:43:31,958 - INFO - Processed 70100000 reads so far
2011-05-20 16:43:39,421 - INFO - Processed 70200000 reads so far
2011-05-20 16:43:46,365 - INFO - Processed 70300000 reads so far
2011-05-20 16:43:55,200 - INFO - Processed 70400000 reads so far
2011-05-20 16:44:02,423 - INFO - Processed 70500000 reads so far
2011-05-20 16:44:10,048 - INFO - Processed 70600000 reads so far
2011-05-20 16:44:17,548 - INFO - Processed 70700000 reads so far
2011-05-20 16:44:24,560 - INFO - Processed 70800000 reads so far
2011-05-20 16:44:31,796 - INFO - Processed 70900000 reads so far
2011-05-20 16:44:38,089 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:42990032-63010032
2011-05-20 16:44:39,064 - INFO - Processed 71000000 reads so far
2011-05-20 16:44:45,994 - INFO - Processed 71100000 reads so far
2011-05-20 16:44:53,524 - INFO - Processed 71200000 reads so far
2011-05-20 16:45:00,399 - INFO - Processed 71300000 reads so far
2011-05-20 16:45:07,379 - INFO - Processed 71400000 reads so far
2011-05-20 16:45:14,343 - INFO - Processed 71500000 reads so far
2011-05-20 16:45:21,503 - INFO - Processed 71600000 reads so far
2011-05-20 16:45:28,568 - INFO - Processed 71700000 reads so far
2011-05-20 16:45:35,976 - INFO - Processed 71800000 reads so far
2011-05-20 16:45:43,290 - INFO - Processed 71900000 reads so far
2011-05-20 16:45:50,838 - INFO - Processed 72000000 reads so far
2011-05-20 16:45:58,603 - INFO - Processed 72100000 reads so far
2011-05-20 16:46:06,099 - INFO - Processed 72200000 reads so far
2011-05-20 16:46:12,169 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:62990051-83010051
2011-05-20 16:46:13,421 - INFO - Processed 72300000 reads so far
2011-05-20 16:46:20,839 - INFO - Processed 72400000 reads so far
2011-05-20 16:46:28,250 - INFO - Processed 72500000 reads so far
2011-05-20 16:46:35,179 - INFO - Processed 72600000 reads so far
2011-05-20 16:46:42,995 - INFO - Processed 72700000 reads so far
2011-05-20 16:46:50,181 - INFO - Processed 72800000 reads so far
2011-05-20 16:46:57,338 - INFO - Processed 72900000 reads so far
2011-05-20 16:47:04,639 - INFO - Processed 73000000 reads so far
2011-05-20 16:47:11,911 - INFO - Processed 73100000 reads so far
2011-05-20 16:47:19,195 - INFO - Processed 73200000 reads so far
2011-05-20 16:47:26,142 - INFO - Processed 73300000 reads so far
2011-05-20 16:47:33,486 - INFO - Processed 73400000 reads so far
2011-05-20 16:47:40,671 - INFO - Processed 73500000 reads so far
2011-05-20 16:47:47,468 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:82990057-103010057
2011-05-20 16:47:47,784 - INFO - Processed 73600000 reads so far
2011-05-20 16:47:54,954 - INFO - Processed 73700000 reads so far
2011-05-20 16:48:01,572 - INFO - Processed 73800000 reads so far
2011-05-20 16:48:07,883 - INFO - Processed 73900000 reads so far
2011-05-20 16:48:15,144 - INFO - Processed 74000000 reads so far
2011-05-20 16:48:22,135 - INFO - Processed 74100000 reads so far
2011-05-20 16:48:29,543 - INFO - Processed 74200000 reads so far
2011-05-20 16:48:36,517 - INFO - Processed 74300000 reads so far
2011-05-20 16:48:43,499 - INFO - Processed 74400000 reads so far
2011-05-20 16:48:50,788 - INFO - Processed 74500000 reads so far
2011-05-20 16:48:58,979 - INFO - Processed 74600000 reads so far
2011-05-20 16:49:06,027 - INFO - Processed 74700000 reads so far
2011-05-20 16:49:13,167 - INFO - Processed 74800000 reads so far
2011-05-20 16:49:20,483 - INFO - Processed 74900000 reads so far
2011-05-20 16:49:26,949 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:102990091-123010091
2011-05-20 16:49:28,367 - INFO - Processed 75000000 reads so far
2011-05-20 16:49:35,427 - INFO - Processed 75100000 reads so far
2011-05-20 16:49:42,488 - INFO - Processed 75200000 reads so far
2011-05-20 16:49:49,490 - INFO - Processed 75300000 reads so far
2011-05-20 16:49:56,621 - INFO - Processed 75400000 reads so far
2011-05-20 16:50:03,819 - INFO - Processed 75500000 reads so far
2011-05-20 16:50:10,743 - INFO - Processed 75600000 reads so far
2011-05-20 16:50:17,842 - INFO - Processed 75700000 reads so far
2011-05-20 16:50:25,309 - INFO - Processed 75800000 reads so far
2011-05-20 16:50:32,534 - INFO - Processed 75900000 reads so far
2011-05-20 16:50:39,714 - INFO - Processed 76000000 reads so far
2011-05-20 16:50:46,716 - INFO - Processed 76100000 reads so far
2011-05-20 16:50:54,118 - INFO - Processed 76200000 reads so far
2011-05-20 16:50:57,979 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:122990093-143010093
2011-05-20 16:51:01,245 - INFO - Processed 76300000 reads so far
2011-05-20 16:51:08,415 - INFO - Processed 76400000 reads so far
2011-05-20 16:51:15,956 - INFO - Processed 76500000 reads so far
2011-05-20 16:51:23,691 - INFO - Processed 76600000 reads so far
2011-05-20 16:51:30,922 - INFO - Processed 76700000 reads so far
2011-05-20 16:51:38,015 - INFO - Processed 76800000 reads so far
2011-05-20 16:51:45,091 - INFO - Processed 76900000 reads so far
2011-05-20 16:51:52,627 - INFO - Processed 77000000 reads so far
2011-05-20 16:52:00,397 - INFO - Processed 77100000 reads so far
2011-05-20 16:52:07,796 - INFO - Processed 77200000 reads so far
2011-05-20 16:52:15,038 - INFO - Processed 77300000 reads so far
2011-05-20 16:52:22,464 - INFO - Processed 77400000 reads so far
2011-05-20 16:52:29,694 - INFO - Processed 77500000 reads so far
2011-05-20 16:52:35,259 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:142990096-163010096
2011-05-20 16:52:36,836 - INFO - Processed 77600000 reads so far
2011-05-20 16:52:43,738 - INFO - Processed 77700000 reads so far
2011-05-20 16:52:51,079 - INFO - Processed 77800000 reads so far
2011-05-20 16:52:58,279 - INFO - Processed 77900000 reads so far
2011-05-20 16:53:05,539 - INFO - Processed 78000000 reads so far
2011-05-20 16:53:12,570 - INFO - Processed 78100000 reads so far
2011-05-20 16:53:20,617 - INFO - Processed 78200000 reads so far
2011-05-20 16:53:27,736 - INFO - Processed 78300000 reads so far
2011-05-20 16:53:34,881 - INFO - Processed 78400000 reads so far
2011-05-20 16:53:43,746 - INFO - Processed 78500000 reads so far
2011-05-20 16:53:50,703 - INFO - Processed 78600000 reads so far
2011-05-20 16:53:58,009 - INFO - Processed 78700000 reads so far
2011-05-20 16:54:05,116 - INFO - Processed 78800000 reads so far
2011-05-20 16:54:08,858 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:162990136-183010136
2011-05-20 16:54:12,289 - INFO - Processed 78900000 reads so far
2011-05-20 16:54:19,408 - INFO - Processed 79000000 reads so far
2011-05-20 16:54:26,687 - INFO - Processed 79100000 reads so far
2011-05-20 16:54:33,998 - INFO - Processed 79200000 reads so far
2011-05-20 16:54:41,072 - INFO - Processed 79300000 reads so far
2011-05-20 16:54:49,015 - INFO - Processed 79400000 reads so far
2011-05-20 16:54:56,545 - INFO - Processed 79500000 reads so far
2011-05-20 16:55:03,608 - INFO - Processed 79600000 reads so far
2011-05-20 16:55:10,960 - INFO - Processed 79700000 reads so far
2011-05-20 16:55:18,406 - INFO - Processed 79800000 reads so far
2011-05-20 16:55:26,372 - INFO - Processed 79900000 reads so far
2011-05-20 16:55:33,353 - INFO - Processed 80000000 reads so far
2011-05-20 16:55:40,281 - INFO - Processed 80100000 reads so far
2011-05-20 16:55:47,446 - INFO - Processed 80200000 reads so far
2011-05-20 16:55:48,173 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1:182990137-203010137
2011-05-20 16:55:54,618 - INFO - Processed 80300000 reads so far
2011-05-20 16:56:02,855 - INFO - Processed 80400000 reads so far
2011-05-20 16:56:10,185 - INFO - Processed 80500000 reads so far
2011-05-20 16:56:17,614 - INFO - Processed 80600000 reads so far
2011-05-20 16:56:25,448 - INFO - Processed 80700000 reads so far
2011-05-20 16:56:32,602 - INFO - Processed 80800000 reads so far
2011-05-20 16:56:39,915 - INFO - Processed 80900000 reads so far
2011-05-20 16:56:46,934 - INFO - Processed 81000000 reads so far
2011-05-20 16:56:54,130 - INFO - Processed 81100000 reads so far
2011-05-20 16:56:57,815 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr1_random:0-20010000
2011-05-20 16:57:01,177 - INFO - Processed 81200000 reads so far
2011-05-20 16:57:07,352 - INFO - Processed 81300000 reads so far
2011-05-20 16:57:08,901 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:2990033-23010033
2011-05-20 16:57:14,618 - INFO - Processed 81400000 reads so far
2011-05-20 16:57:22,246 - INFO - Processed 81500000 reads so far
2011-05-20 16:57:29,498 - INFO - Processed 81600000 reads so far
2011-05-20 16:57:36,882 - INFO - Processed 81700000 reads so far
2011-05-20 16:57:44,105 - INFO - Processed 81800000 reads so far
2011-05-20 16:57:51,268 - INFO - Processed 81900000 reads so far
2011-05-20 16:57:58,179 - INFO - Processed 82000000 reads so far
2011-05-20 16:58:05,396 - INFO - Processed 82100000 reads so far
2011-05-20 16:58:12,363 - INFO - Processed 82200000 reads so far
2011-05-20 16:58:19,462 - INFO - Processed 82300000 reads so far
2011-05-20 16:58:26,546 - INFO - Processed 82400000 reads so far
2011-05-20 16:58:33,788 - INFO - Processed 82500000 reads so far
2011-05-20 16:58:41,264 - INFO - Processed 82600000 reads so far
2011-05-20 16:58:45,177 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:22990042-43010042
2011-05-20 16:58:48,369 - INFO - Processed 82700000 reads so far
2011-05-20 16:58:55,420 - INFO - Processed 82800000 reads so far
2011-05-20 16:59:02,943 - INFO - Processed 82900000 reads so far
2011-05-20 16:59:10,297 - INFO - Processed 83000000 reads so far
2011-05-20 16:59:17,490 - INFO - Processed 83100000 reads so far
2011-05-20 16:59:25,266 - INFO - Processed 83200000 reads so far
2011-05-20 16:59:32,820 - INFO - Processed 83300000 reads so far
2011-05-20 16:59:39,954 - INFO - Processed 83400000 reads so far
2011-05-20 16:59:47,103 - INFO - Processed 83500000 reads so far
2011-05-20 16:59:56,035 - INFO - Processed 83600000 reads so far
2011-05-20 17:00:03,424 - INFO - Processed 83700000 reads so far
2011-05-20 17:00:10,565 - INFO - Processed 83800000 reads so far
2011-05-20 17:00:17,865 - INFO - Processed 83900000 reads so far
2011-05-20 17:00:22,523 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:42990067-63010067
2011-05-20 17:00:25,558 - INFO - Processed 84000000 reads so far
2011-05-20 17:00:32,664 - INFO - Processed 84100000 reads so far
2011-05-20 17:00:39,785 - INFO - Processed 84200000 reads so far
2011-05-20 17:00:46,768 - INFO - Processed 84300000 reads so far
2011-05-20 17:00:53,957 - INFO - Processed 84400000 reads so far
2011-05-20 17:01:01,237 - INFO - Processed 84500000 reads so far
2011-05-20 17:01:08,325 - INFO - Processed 84600000 reads so far
2011-05-20 17:01:15,733 - INFO - Processed 84700000 reads so far
2011-05-20 17:01:23,056 - INFO - Processed 84800000 reads so far
2011-05-20 17:01:30,334 - INFO - Processed 84900000 reads so far
2011-05-20 17:01:37,795 - INFO - Processed 85000000 reads so far
2011-05-20 17:01:45,528 - INFO - Processed 85100000 reads so far
2011-05-20 17:01:52,455 - INFO - Processed 85200000 reads so far
2011-05-20 17:01:55,596 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:62990070-83010070
2011-05-20 17:01:59,506 - INFO - Processed 85300000 reads so far
2011-05-20 17:02:06,813 - INFO - Processed 85400000 reads so far
2011-05-20 17:02:13,944 - INFO - Processed 85500000 reads so far
2011-05-20 17:02:21,148 - INFO - Processed 85600000 reads so far
2011-05-20 17:02:28,353 - INFO - Processed 85700000 reads so far
2011-05-20 17:02:36,303 - INFO - Processed 85800000 reads so far
2011-05-20 17:02:43,943 - INFO - Processed 85900000 reads so far
2011-05-20 17:02:51,404 - INFO - Processed 86000000 reads so far
2011-05-20 17:02:58,378 - INFO - Processed 86100000 reads so far
2011-05-20 17:03:06,010 - INFO - Processed 86200000 reads so far
2011-05-20 17:03:13,552 - INFO - Processed 86300000 reads so far
2011-05-20 17:03:22,183 - INFO - Processed 86400000 reads so far
2011-05-20 17:03:29,306 - INFO - Processed 86500000 reads so far
2011-05-20 17:03:32,114 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:82990155-103010155
2011-05-20 17:03:36,235 - INFO - Processed 86600000 reads so far
2011-05-20 17:03:43,597 - INFO - Processed 86700000 reads so far
2011-05-20 17:03:50,643 - INFO - Processed 86800000 reads so far
2011-05-20 17:03:57,654 - INFO - Processed 86900000 reads so far
2011-05-20 17:04:05,004 - INFO - Processed 87000000 reads so far
2011-05-20 17:04:12,165 - INFO - Processed 87100000 reads so far
2011-05-20 17:04:19,544 - INFO - Processed 87200000 reads so far
2011-05-20 17:04:26,850 - INFO - Processed 87300000 reads so far
2011-05-20 17:04:34,206 - INFO - Processed 87400000 reads so far
2011-05-20 17:04:41,416 - INFO - Processed 87500000 reads so far
2011-05-20 17:04:47,804 - INFO - Processed 87600000 reads so far
2011-05-20 17:04:53,560 - INFO - Processed 87700000 reads so far
2011-05-20 17:05:00,270 - INFO - Processed 87800000 reads so far
2011-05-20 17:05:06,315 - INFO - Processed 87900000 reads so far
2011-05-20 17:05:12,457 - INFO - Processed 88000000 reads so far
2011-05-20 17:05:18,968 - INFO - Processed 88100000 reads so far
2011-05-20 17:05:24,750 - INFO - Processed 88200000 reads so far
2011-05-20 17:05:30,592 - INFO - Processed 88300000 reads so far
2011-05-20 17:05:36,639 - INFO - Processed 88400000 reads so far
2011-05-20 17:05:43,094 - INFO - Processed 88500000 reads so far
2011-05-20 17:05:48,936 - INFO - Processed 88600000 reads so far
2011-05-20 17:05:54,612 - INFO - Processed 88700000 reads so far
2011-05-20 17:06:00,398 - INFO - Processed 88800000 reads so far
2011-05-20 17:06:06,251 - INFO - Processed 88900000 reads so far
2011-05-20 17:06:12,260 - INFO - Processed 89000000 reads so far
2011-05-20 17:06:17,944 - INFO - Processed 89100000 reads so far
2011-05-20 17:06:23,929 - INFO - Processed 89200000 reads so far
2011-05-20 17:06:30,512 - INFO - Processed 89300000 reads so far
2011-05-20 17:06:36,407 - INFO - Processed 89400000 reads so far
2011-05-20 17:06:42,555 - INFO - Processed 89500000 reads so far
2011-05-20 17:06:48,498 - INFO - Processed 89600000 reads so far
2011-05-20 17:06:54,618 - INFO - Processed 89700000 reads so far
2011-05-20 17:07:00,823 - INFO - Processed 89800000 reads so far
2011-05-20 17:07:06,465 - INFO - Processed 89900000 reads so far
2011-05-20 17:07:12,592 - INFO - Processed 90000000 reads so far
2011-05-20 17:07:18,484 - INFO - Processed 90100000 reads so far
2011-05-20 17:07:24,678 - INFO - Processed 90200000 reads so far
2011-05-20 17:07:31,101 - INFO - Processed 90300000 reads so far
2011-05-20 17:07:37,202 - INFO - Processed 90400000 reads so far
2011-05-20 17:07:43,029 - INFO - Processed 90500000 reads so far
2011-05-20 17:07:48,878 - INFO - Processed 90600000 reads so far
2011-05-20 17:07:54,740 - INFO - Processed 90700000 reads so far
2011-05-20 17:08:00,427 - INFO - Processed 90800000 reads so far
2011-05-20 17:08:06,568 - INFO - Processed 90900000 reads so far
2011-05-20 17:08:12,872 - INFO - Processed 91000000 reads so far
2011-05-20 17:08:19,278 - INFO - Processed 91100000 reads so far
2011-05-20 17:08:25,072 - INFO - Processed 91200000 reads so far
2011-05-20 17:08:31,224 - INFO - Processed 91300000 reads so far
2011-05-20 17:08:37,762 - INFO - Processed 91400000 reads so far
2011-05-20 17:08:43,515 - INFO - Processed 91500000 reads so far
2011-05-20 17:08:49,205 - INFO - Processed 91600000 reads so far
2011-05-20 17:08:56,717 - INFO - Processed 91700000 reads so far
2011-05-20 17:09:02,587 - INFO - Processed 91800000 reads so far
2011-05-20 17:09:08,638 - INFO - Processed 91900000 reads so far
2011-05-20 17:09:14,628 - INFO - Processed 92000000 reads so far
2011-05-20 17:09:20,287 - INFO - Processed 92100000 reads so far
2011-05-20 17:09:26,087 - INFO - Processed 92200000 reads so far
2011-05-20 17:09:32,086 - INFO - Processed 92300000 reads so far
2011-05-20 17:09:38,421 - INFO - Processed 92400000 reads so far
2011-05-20 17:09:45,228 - INFO - Processed 92500000 reads so far
2011-05-20 17:09:51,237 - INFO - Processed 92600000 reads so far
2011-05-20 17:09:56,900 - INFO - Processed 92700000 reads so far
2011-05-20 17:10:02,751 - INFO - Processed 92800000 reads so far
2011-05-20 17:10:08,908 - INFO - Processed 92900000 reads so far
2011-05-20 17:10:14,830 - INFO - Processed 93000000 reads so far
2011-05-20 17:10:20,950 - INFO - Processed 93100000 reads so far
2011-05-20 17:10:27,274 - INFO - Processed 93200000 reads so far
2011-05-20 17:10:33,233 - INFO - Processed 93300000 reads so far
2011-05-20 17:10:39,255 - INFO - Processed 93400000 reads so far
2011-05-20 17:10:45,254 - INFO - Processed 93500000 reads so far
2011-05-20 17:10:51,314 - INFO - Processed 93600000 reads so far
2011-05-20 17:10:57,654 - INFO - Processed 93700000 reads so far
2011-05-20 17:11:03,888 - INFO - Processed 93800000 reads so far
2011-05-20 17:11:09,818 - INFO - Processed 93900000 reads so far
2011-05-20 17:11:15,900 - INFO - Processed 94000000 reads so far
2011-05-20 17:11:21,884 - INFO - Processed 94100000 reads so far
2011-05-20 17:11:27,900 - INFO - Processed 94200000 reads so far
2011-05-20 17:11:33,820 - INFO - Processed 94300000 reads so far
2011-05-20 17:11:39,771 - INFO - Processed 94400000 reads so far
2011-05-20 17:11:45,580 - INFO - Processed 94500000 reads so far
2011-05-20 17:11:51,863 - INFO - Processed 94600000 reads so far
2011-05-20 17:11:58,657 - INFO - Processed 94700000 reads so far
2011-05-20 17:12:04,879 - INFO - Processed 94800000 reads so far
2011-05-20 17:12:10,870 - INFO - Processed 94900000 reads so far
2011-05-20 17:12:16,915 - INFO - Processed 95000000 reads so far
2011-05-20 17:12:22,577 - INFO - Processed 95100000 reads so far
2011-05-20 17:12:28,735 - INFO - Processed 95200000 reads so far
2011-05-20 17:12:34,599 - INFO - Processed 95300000 reads so far
2011-05-20 17:12:40,599 - INFO - Processed 95400000 reads so far
2011-05-20 17:12:46,725 - INFO - Processed 95500000 reads so far
2011-05-20 17:12:52,628 - INFO - Processed 95600000 reads so far
2011-05-20 17:12:58,837 - INFO - Processed 95700000 reads so far
2011-05-20 17:13:04,958 - INFO - Processed 95800000 reads so far
2011-05-20 17:13:10,869 - INFO - Processed 95900000 reads so far
2011-05-20 17:13:16,814 - INFO - Processed 96000000 reads so far
2011-05-20 17:13:22,923 - INFO - Processed 96100000 reads so far
2011-05-20 17:13:28,971 - INFO - Processed 96200000 reads so far
2011-05-20 17:13:35,134 - INFO - Processed 96300000 reads so far
2011-05-20 17:13:41,154 - INFO - Processed 96400000 reads so far
2011-05-20 17:13:47,377 - INFO - Processed 96500000 reads so far
2011-05-20 17:13:53,643 - INFO - Processed 96600000 reads so far
2011-05-20 17:13:59,576 - INFO - Processed 96700000 reads so far
2011-05-20 17:14:05,393 - INFO - Processed 96800000 reads so far
2011-05-20 17:14:11,176 - INFO - Processed 96900000 reads so far
2011-05-20 17:14:17,258 - INFO - Processed 97000000 reads so far
2011-05-20 17:14:23,363 - INFO - Processed 97100000 reads so far
2011-05-20 17:14:29,323 - INFO - Processed 97200000 reads so far
2011-05-20 17:14:35,714 - INFO - Processed 97300000 reads so far
2011-05-20 17:14:42,053 - INFO - Processed 97400000 reads so far
2011-05-20 17:14:48,174 - INFO - Processed 97500000 reads so far
2011-05-20 17:14:54,561 - INFO - Processed 97600000 reads so far
2011-05-20 17:15:00,953 - INFO - Processed 97700000 reads so far
2011-05-20 17:15:07,125 - INFO - Processed 97800000 reads so far
2011-05-20 17:15:13,975 - INFO - Processed 97900000 reads so far
2011-05-20 17:15:21,527 - INFO - Processed 98000000 reads so far
2011-05-20 17:15:28,547 - INFO - Processed 98100000 reads so far
2011-05-20 17:15:30,301 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:102990163-123010163
2011-05-20 17:15:35,782 - INFO - Processed 98200000 reads so far
2011-05-20 17:15:43,817 - INFO - Processed 98300000 reads so far
2011-05-20 17:15:51,275 - INFO - Processed 98400000 reads so far
2011-05-20 17:15:58,770 - INFO - Processed 98500000 reads so far
2011-05-20 17:16:05,804 - INFO - Processed 98600000 reads so far
2011-05-20 17:16:13,283 - INFO - Processed 98700000 reads so far
2011-05-20 17:16:20,701 - INFO - Processed 98800000 reads so far
2011-05-20 17:16:27,712 - INFO - Processed 98900000 reads so far
2011-05-20 17:16:34,754 - INFO - Processed 99000000 reads so far
2011-05-20 17:16:42,160 - INFO - Processed 99100000 reads so far
2011-05-20 17:16:49,815 - INFO - Processed 99200000 reads so far
2011-05-20 17:16:57,364 - INFO - Processed 99300000 reads so far
2011-05-20 17:17:04,569 - INFO - Processed 99400000 reads so far
2011-05-20 17:17:07,098 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:122990191-143010191
2011-05-20 17:17:11,867 - INFO - Processed 99500000 reads so far
2011-05-20 17:17:19,443 - INFO - Processed 99600000 reads so far
2011-05-20 17:17:26,961 - INFO - Processed 99700000 reads so far
2011-05-20 17:17:34,060 - INFO - Processed 99800000 reads so far
2011-05-20 17:17:41,682 - INFO - Processed 99900000 reads so far
2011-05-20 17:17:49,440 - INFO - Processed 100000000 reads so far
2011-05-20 17:17:56,547 - INFO - Processed 100100000 reads so far
2011-05-20 17:18:04,065 - INFO - Processed 100200000 reads so far
2011-05-20 17:18:11,193 - INFO - Processed 100300000 reads so far
2011-05-20 17:18:18,192 - INFO - Processed 100400000 reads so far
2011-05-20 17:18:25,317 - INFO - Processed 100500000 reads so far
2011-05-20 17:18:32,521 - INFO - Processed 100600000 reads so far
2011-05-20 17:18:40,599 - INFO - Processed 100700000 reads so far
2011-05-20 17:18:46,177 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:142990205-163010205
2011-05-20 17:18:47,822 - INFO - Processed 100800000 reads so far
2011-05-20 17:18:54,858 - INFO - Processed 100900000 reads so far
2011-05-20 17:19:02,133 - INFO - Processed 101000000 reads so far
2011-05-20 17:19:09,219 - INFO - Processed 101100000 reads so far
2011-05-20 17:19:16,673 - INFO - Processed 101200000 reads so far
2011-05-20 17:19:23,708 - INFO - Processed 101300000 reads so far
2011-05-20 17:19:30,758 - INFO - Processed 101400000 reads so far
2011-05-20 17:19:37,942 - INFO - Processed 101500000 reads so far
2011-05-20 17:19:45,399 - INFO - Processed 101600000 reads so far
2011-05-20 17:19:53,105 - INFO - Processed 101700000 reads so far
2011-05-20 17:20:00,269 - INFO - Processed 101800000 reads so far
2011-05-20 17:20:07,508 - INFO - Processed 101900000 reads so far
2011-05-20 17:20:15,048 - INFO - Processed 102000000 reads so far
2011-05-20 17:20:22,584 - INFO - Processed 102100000 reads so far
2011-05-20 17:20:23,566 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr2:162990212-183010212
2011-05-20 17:20:30,134 - INFO - Processed 102200000 reads so far
2011-05-20 17:20:37,602 - INFO - Processed 102300000 reads so far
2011-05-20 17:20:44,833 - INFO - Processed 102400000 reads so far
2011-05-20 17:20:52,629 - INFO - Processed 102500000 reads so far
2011-05-20 17:20:59,800 - INFO - Processed 102600000 reads so far
2011-05-20 17:21:07,280 - INFO - Processed 102700000 reads so far
2011-05-20 17:21:14,239 - INFO - Processed 102800000 reads so far
2011-05-20 17:21:21,403 - INFO - Processed 102900000 reads so far
2011-05-20 17:21:28,537 - INFO - Processed 103000000 reads so far
2011-05-20 17:21:35,629 - INFO - Processed 103100000 reads so far
2011-05-20 17:21:42,834 - INFO - Processed 103200000 reads so far
2011-05-20 17:21:50,242 - INFO - Processed 103300000 reads so far
2011-05-20 17:21:57,007 - INFO - Processed 103400000 reads so far
2011-05-20 17:21:58,227 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:2989998-23009998
2011-05-20 17:22:03,685 - INFO - Processed 103500000 reads so far
2011-05-20 17:22:11,075 - INFO - Processed 103600000 reads so far
2011-05-20 17:22:18,069 - INFO - Processed 103700000 reads so far
2011-05-20 17:22:25,216 - INFO - Processed 103800000 reads so far
2011-05-20 17:22:32,377 - INFO - Processed 103900000 reads so far
2011-05-20 17:22:39,579 - INFO - Processed 104000000 reads so far
2011-05-20 17:22:46,432 - INFO - Processed 104100000 reads so far
2011-05-20 17:22:55,253 - INFO - Processed 104200000 reads so far
2011-05-20 17:23:02,468 - INFO - Processed 104300000 reads so far
2011-05-20 17:23:09,636 - INFO - Processed 104400000 reads so far
2011-05-20 17:23:16,679 - INFO - Processed 104500000 reads so far
2011-05-20 17:23:23,705 - INFO - Processed 104600000 reads so far
2011-05-20 17:23:31,138 - INFO - Processed 104700000 reads so far
2011-05-20 17:23:31,493 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:22990011-43010011
2011-05-20 17:23:38,453 - INFO - Processed 104800000 reads so far
2011-05-20 17:23:48,036 - INFO - Processed 104900000 reads so far
2011-05-20 17:23:55,257 - INFO - Processed 105000000 reads so far
2011-05-20 17:24:03,192 - INFO - Processed 105100000 reads so far
2011-05-20 17:24:11,474 - INFO - Processed 105200000 reads so far
2011-05-20 17:24:18,519 - INFO - Processed 105300000 reads so far
2011-05-20 17:24:25,676 - INFO - Processed 105400000 reads so far
2011-05-20 17:24:34,354 - INFO - Processed 105500000 reads so far
2011-05-20 17:24:41,473 - INFO - Processed 105600000 reads so far
2011-05-20 17:24:48,814 - INFO - Processed 105700000 reads so far
2011-05-20 17:24:56,518 - INFO - Processed 105800000 reads so far
2011-05-20 17:25:03,553 - INFO - Processed 105900000 reads so far
2011-05-20 17:25:10,980 - INFO - Processed 106000000 reads so far
2011-05-20 17:25:12,463 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:42990019-63010019
2011-05-20 17:25:18,502 - INFO - Processed 106100000 reads so far
2011-05-20 17:25:25,545 - INFO - Processed 106200000 reads so far
2011-05-20 17:25:32,699 - INFO - Processed 106300000 reads so far
2011-05-20 17:25:41,076 - INFO - Processed 106400000 reads so far
2011-05-20 17:25:48,640 - INFO - Processed 106500000 reads so far
2011-05-20 17:25:55,924 - INFO - Processed 106600000 reads so far
2011-05-20 17:26:02,982 - INFO - Processed 106700000 reads so far
2011-05-20 17:26:10,054 - INFO - Processed 106800000 reads so far
2011-05-20 17:26:17,087 - INFO - Processed 106900000 reads so far
2011-05-20 17:26:24,234 - INFO - Processed 107000000 reads so far
2011-05-20 17:26:31,261 - INFO - Processed 107100000 reads so far
2011-05-20 17:26:38,695 - INFO - Processed 107200000 reads so far
2011-05-20 17:26:45,385 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:62990024-83010024
2011-05-20 17:26:46,325 - INFO - Processed 107300000 reads so far
2011-05-20 17:26:53,957 - INFO - Processed 107400000 reads so far
2011-05-20 17:27:00,993 - INFO - Processed 107500000 reads so far
2011-05-20 17:27:08,052 - INFO - Processed 107600000 reads so far
2011-05-20 17:27:15,622 - INFO - Processed 107700000 reads so far
2011-05-20 17:27:22,497 - INFO - Processed 107800000 reads so far
2011-05-20 17:27:29,733 - INFO - Processed 107900000 reads so far
2011-05-20 17:27:37,175 - INFO - Processed 108000000 reads so far
2011-05-20 17:27:44,579 - INFO - Processed 108100000 reads so far
2011-05-20 17:27:51,922 - INFO - Processed 108200000 reads so far
2011-05-20 17:27:59,191 - INFO - Processed 108300000 reads so far
2011-05-20 17:28:06,377 - INFO - Processed 108400000 reads so far
2011-05-20 17:28:14,160 - INFO - Processed 108500000 reads so far
2011-05-20 17:28:18,590 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:82990028-103010028
2011-05-20 17:28:21,251 - INFO - Processed 108600000 reads so far
2011-05-20 17:28:28,442 - INFO - Processed 108700000 reads so far
2011-05-20 17:28:35,605 - INFO - Processed 108800000 reads so far
2011-05-20 17:28:42,977 - INFO - Processed 108900000 reads so far
2011-05-20 17:28:50,756 - INFO - Processed 109000000 reads so far
2011-05-20 17:28:57,902 - INFO - Processed 109100000 reads so far
2011-05-20 17:29:05,358 - INFO - Processed 109200000 reads so far
2011-05-20 17:29:12,525 - INFO - Processed 109300000 reads so far
2011-05-20 17:29:19,854 - INFO - Processed 109400000 reads so far
2011-05-20 17:29:27,123 - INFO - Processed 109500000 reads so far
2011-05-20 17:29:34,449 - INFO - Processed 109600000 reads so far
2011-05-20 17:29:41,931 - INFO - Processed 109700000 reads so far
2011-05-20 17:29:49,302 - INFO - Processed 109800000 reads so far
2011-05-20 17:29:55,009 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:102990030-123010030
2011-05-20 17:29:56,700 - INFO - Processed 109900000 reads so far
2011-05-20 17:30:03,693 - INFO - Processed 110000000 reads so far
2011-05-20 17:30:10,639 - INFO - Processed 110100000 reads so far
2011-05-20 17:30:17,777 - INFO - Processed 110200000 reads so far
2011-05-20 17:30:25,565 - INFO - Processed 110300000 reads so far
2011-05-20 17:30:32,546 - INFO - Processed 110400000 reads so far
2011-05-20 17:30:39,753 - INFO - Processed 110500000 reads so far
2011-05-20 17:30:46,857 - INFO - Processed 110600000 reads so far
2011-05-20 17:30:54,631 - INFO - Processed 110700000 reads so far
2011-05-20 17:31:01,782 - INFO - Processed 110800000 reads so far
2011-05-20 17:31:08,816 - INFO - Processed 110900000 reads so far
2011-05-20 17:31:17,645 - INFO - Processed 111000000 reads so far
2011-05-20 17:31:24,696 - INFO - Processed 111100000 reads so far
2011-05-20 17:31:31,189 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:122990039-143010039
2011-05-20 17:31:32,099 - INFO - Processed 111200000 reads so far
2011-05-20 17:31:39,139 - INFO - Processed 111300000 reads so far
2011-05-20 17:31:47,134 - INFO - Processed 111400000 reads so far
2011-05-20 17:31:54,132 - INFO - Processed 111500000 reads so far
2011-05-20 17:32:01,479 - INFO - Processed 111600000 reads so far
2011-05-20 17:32:08,665 - INFO - Processed 111700000 reads so far
2011-05-20 17:32:17,474 - INFO - Processed 111800000 reads so far
2011-05-20 17:32:25,614 - INFO - Processed 111900000 reads so far
2011-05-20 17:32:32,568 - INFO - Processed 112000000 reads so far
2011-05-20 17:32:39,526 - INFO - Processed 112100000 reads so far
2011-05-20 17:32:46,663 - INFO - Processed 112200000 reads so far
2011-05-20 17:32:53,807 - INFO - Processed 112300000 reads so far
2011-05-20 17:33:01,943 - INFO - Processed 112400000 reads so far
2011-05-20 17:33:08,748 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3:142990042-163010042
2011-05-20 17:33:09,124 - INFO - Processed 112500000 reads so far
2011-05-20 17:33:16,093 - INFO - Processed 112600000 reads so far
2011-05-20 17:33:23,364 - INFO - Processed 112700000 reads so far
2011-05-20 17:33:30,381 - INFO - Processed 112800000 reads so far
2011-05-20 17:33:37,590 - INFO - Processed 112900000 reads so far
2011-05-20 17:33:44,661 - INFO - Processed 113000000 reads so far
2011-05-20 17:33:51,808 - INFO - Processed 113100000 reads so far
2011-05-20 17:33:58,968 - INFO - Processed 113200000 reads so far
2011-05-20 17:34:06,058 - INFO - Processed 113300000 reads so far
2011-05-20 17:34:12,937 - INFO - Processed 113400000 reads so far
2011-05-20 17:34:20,233 - INFO - Processed 113500000 reads so far
2011-05-20 17:34:27,895 - INFO - Processed 113600000 reads so far
2011-05-20 17:34:28,065 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr3_random:0-20010068
2011-05-20 17:34:28,165 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:2989988-23009988
2011-05-20 17:34:35,007 - INFO - Processed 113700000 reads so far
2011-05-20 17:34:42,151 - INFO - Processed 113800000 reads so far
2011-05-20 17:34:49,144 - INFO - Processed 113900000 reads so far
2011-05-20 17:34:56,180 - INFO - Processed 114000000 reads so far
2011-05-20 17:35:03,511 - INFO - Processed 114100000 reads so far
2011-05-20 17:35:10,777 - INFO - Processed 114200000 reads so far
2011-05-20 17:35:17,776 - INFO - Processed 114300000 reads so far
2011-05-20 17:35:24,898 - INFO - Processed 114400000 reads so far
2011-05-20 17:35:32,620 - INFO - Processed 114500000 reads so far
2011-05-20 17:35:39,679 - INFO - Processed 114600000 reads so far
2011-05-20 17:35:46,700 - INFO - Processed 114700000 reads so far
2011-05-20 17:35:53,897 - INFO - Processed 114800000 reads so far
2011-05-20 17:36:01,421 - INFO - Processed 114900000 reads so far
2011-05-20 17:36:04,284 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:22990002-43010002
2011-05-20 17:36:08,961 - INFO - Processed 115000000 reads so far
2011-05-20 17:36:16,486 - INFO - Processed 115100000 reads so far
2011-05-20 17:36:24,169 - INFO - Processed 115200000 reads so far
2011-05-20 17:36:32,219 - INFO - Processed 115300000 reads so far
2011-05-20 17:36:39,425 - INFO - Processed 115400000 reads so far
2011-05-20 17:36:46,768 - INFO - Processed 115500000 reads so far
2011-05-20 17:36:53,964 - INFO - Processed 115600000 reads so far
2011-05-20 17:37:02,787 - INFO - Processed 115700000 reads so far
2011-05-20 17:37:10,156 - INFO - Processed 115800000 reads so far
2011-05-20 17:37:17,376 - INFO - Processed 115900000 reads so far
2011-05-20 17:37:24,472 - INFO - Processed 116000000 reads so far
2011-05-20 17:37:31,997 - INFO - Processed 116100000 reads so far
2011-05-20 17:37:37,056 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:42990035-63010035
2011-05-20 17:37:39,544 - INFO - Processed 116200000 reads so far
2011-05-20 17:37:47,181 - INFO - Processed 116300000 reads so far
2011-05-20 17:37:54,515 - INFO - Processed 116400000 reads so far
2011-05-20 17:38:02,109 - INFO - Processed 116500000 reads so far
2011-05-20 17:38:09,324 - INFO - Processed 116600000 reads so far
2011-05-20 17:38:16,497 - INFO - Processed 116700000 reads so far
2011-05-20 17:38:24,610 - INFO - Processed 116800000 reads so far
2011-05-20 17:38:31,926 - INFO - Processed 116900000 reads so far
2011-05-20 17:38:39,073 - INFO - Processed 117000000 reads so far
2011-05-20 17:38:46,166 - INFO - Processed 117100000 reads so far
2011-05-20 17:38:53,610 - INFO - Processed 117200000 reads so far
2011-05-20 17:39:01,052 - INFO - Processed 117300000 reads so far
2011-05-20 17:39:08,289 - INFO - Processed 117400000 reads so far
2011-05-20 17:39:13,954 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:62990050-83010050
2011-05-20 17:39:16,211 - INFO - Processed 117500000 reads so far
2011-05-20 17:39:23,293 - INFO - Processed 117600000 reads so far
2011-05-20 17:39:30,998 - INFO - Processed 117700000 reads so far
2011-05-20 17:39:38,424 - INFO - Processed 117800000 reads so far
2011-05-20 17:39:45,322 - INFO - Processed 117900000 reads so far
2011-05-20 17:39:52,041 - INFO - Processed 118000000 reads so far
2011-05-20 17:39:59,247 - INFO - Processed 118100000 reads so far
2011-05-20 17:40:06,545 - INFO - Processed 118200000 reads so far
2011-05-20 17:40:13,925 - INFO - Processed 118300000 reads so far
2011-05-20 17:40:20,863 - INFO - Processed 118400000 reads so far
2011-05-20 17:40:27,991 - INFO - Processed 118500000 reads so far
2011-05-20 17:40:35,127 - INFO - Processed 118600000 reads so far
2011-05-20 17:40:42,134 - INFO - Processed 118700000 reads so far
2011-05-20 17:40:47,535 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:82990059-103010059
2011-05-20 17:40:49,771 - INFO - Processed 118800000 reads so far
2011-05-20 17:40:56,907 - INFO - Processed 118900000 reads so far
2011-05-20 17:41:04,104 - INFO - Processed 119000000 reads so far
2011-05-20 17:41:11,189 - INFO - Processed 119100000 reads so far
2011-05-20 17:41:18,149 - INFO - Processed 119200000 reads so far
2011-05-20 17:41:25,460 - INFO - Processed 119300000 reads so far
2011-05-20 17:41:32,656 - INFO - Processed 119400000 reads so far
2011-05-20 17:41:39,858 - INFO - Processed 119500000 reads so far
2011-05-20 17:41:48,409 - INFO - Processed 119600000 reads so far
2011-05-20 17:41:55,637 - INFO - Processed 119700000 reads so far
2011-05-20 17:42:03,600 - INFO - Processed 119800000 reads so far
2011-05-20 17:42:10,999 - INFO - Processed 119900000 reads so far
2011-05-20 17:42:18,206 - INFO - Processed 120000000 reads so far
2011-05-20 17:42:25,342 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:102990086-123010086
2011-05-20 17:42:25,611 - INFO - Processed 120100000 reads so far
2011-05-20 17:42:32,704 - INFO - Processed 120200000 reads so far
2011-05-20 17:42:39,773 - INFO - Processed 120300000 reads so far
2011-05-20 17:42:47,017 - INFO - Processed 120400000 reads so far
2011-05-20 17:42:54,308 - INFO - Processed 120500000 reads so far
2011-05-20 17:43:01,501 - INFO - Processed 120600000 reads so far
2011-05-20 17:43:09,266 - INFO - Processed 120700000 reads so far
2011-05-20 17:43:16,501 - INFO - Processed 120800000 reads so far
2011-05-20 17:43:23,783 - INFO - Processed 120900000 reads so far
2011-05-20 17:43:31,214 - INFO - Processed 121000000 reads so far
2011-05-20 17:43:38,690 - INFO - Processed 121100000 reads so far
2011-05-20 17:43:46,441 - INFO - Processed 121200000 reads so far
2011-05-20 17:43:54,054 - INFO - Processed 121300000 reads so far
2011-05-20 17:43:55,044 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:122990117-143010117
2011-05-20 17:44:01,870 - INFO - Processed 121400000 reads so far
2011-05-20 17:44:09,255 - INFO - Processed 121500000 reads so far
2011-05-20 17:44:16,608 - INFO - Processed 121600000 reads so far
2011-05-20 17:44:23,915 - INFO - Processed 121700000 reads so far
2011-05-20 17:44:31,082 - INFO - Processed 121800000 reads so far
2011-05-20 17:44:38,110 - INFO - Processed 121900000 reads so far
2011-05-20 17:44:45,363 - INFO - Processed 122000000 reads so far
2011-05-20 17:44:52,741 - INFO - Processed 122100000 reads so far
2011-05-20 17:45:00,196 - INFO - Processed 122200000 reads so far
2011-05-20 17:45:07,767 - INFO - Processed 122300000 reads so far
2011-05-20 17:45:15,338 - INFO - Processed 122400000 reads so far
2011-05-20 17:45:22,857 - INFO - Processed 122500000 reads so far
2011-05-20 17:45:29,810 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4:142990118-163010118
2011-05-20 17:45:30,120 - INFO - Processed 122600000 reads so far
2011-05-20 17:45:37,127 - INFO - Processed 122700000 reads so far
2011-05-20 17:45:43,732 - INFO - Processed 122800000 reads so far
2011-05-20 17:45:50,866 - INFO - Processed 122900000 reads so far
2011-05-20 17:45:57,341 - INFO - Processed 123000000 reads so far
2011-05-20 17:46:04,456 - INFO - Processed 123100000 reads so far
2011-05-20 17:46:12,070 - INFO - Processed 123200000 reads so far
2011-05-20 17:46:20,543 - INFO - Processed 123300000 reads so far
2011-05-20 17:46:28,540 - INFO - Processed 123400000 reads so far
2011-05-20 17:46:35,968 - INFO - Processed 123500000 reads so far
2011-05-20 17:46:40,077 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr4_random:0-20010009
2011-05-20 17:46:40,858 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:2990046-23010046
2011-05-20 17:46:43,205 - INFO - Processed 123600000 reads so far
2011-05-20 17:46:51,305 - INFO - Processed 123700000 reads so far
2011-05-20 17:46:58,245 - INFO - Processed 123800000 reads so far
2011-05-20 17:47:06,142 - INFO - Processed 123900000 reads so far
2011-05-20 17:47:13,542 - INFO - Processed 124000000 reads so far
2011-05-20 17:47:20,612 - INFO - Processed 124100000 reads so far
2011-05-20 17:47:27,617 - INFO - Processed 124200000 reads so far
2011-05-20 17:47:34,720 - INFO - Processed 124300000 reads so far
2011-05-20 17:47:41,458 - INFO - Processed 124400000 reads so far
2011-05-20 17:47:48,477 - INFO - Processed 124500000 reads so far
2011-05-20 17:47:55,540 - INFO - Processed 124600000 reads so far
2011-05-20 17:48:02,784 - INFO - Processed 124700000 reads so far
2011-05-20 17:48:10,443 - INFO - Processed 124800000 reads so far
2011-05-20 17:48:17,557 - INFO - Processed 124900000 reads so far
2011-05-20 17:48:18,023 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:22990543-43010543
2011-05-20 17:48:24,803 - INFO - Processed 125000000 reads so far
2011-05-20 17:48:31,781 - INFO - Processed 125100000 reads so far
2011-05-20 17:48:39,084 - INFO - Processed 125200000 reads so far
2011-05-20 17:48:46,238 - INFO - Processed 125300000 reads so far
2011-05-20 17:48:53,264 - INFO - Processed 125400000 reads so far
2011-05-20 17:49:00,700 - INFO - Processed 125500000 reads so far
2011-05-20 17:49:07,839 - INFO - Processed 125600000 reads so far
2011-05-20 17:49:15,257 - INFO - Processed 125700000 reads so far
2011-05-20 17:49:22,476 - INFO - Processed 125800000 reads so far
2011-05-20 17:49:29,839 - INFO - Processed 125900000 reads so far
2011-05-20 17:49:37,382 - INFO - Processed 126000000 reads so far
2011-05-20 17:49:44,343 - INFO - Processed 126100000 reads so far
2011-05-20 17:49:51,391 - INFO - Processed 126200000 reads so far
2011-05-20 17:49:52,233 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:42990567-63010567
2011-05-20 17:49:58,774 - INFO - Processed 126300000 reads so far
2011-05-20 17:50:05,743 - INFO - Processed 126400000 reads so far
2011-05-20 17:50:12,865 - INFO - Processed 126500000 reads so far
2011-05-20 17:50:19,913 - INFO - Processed 126600000 reads so far
2011-05-20 17:50:27,083 - INFO - Processed 126700000 reads so far
2011-05-20 17:50:34,436 - INFO - Processed 126800000 reads so far
2011-05-20 17:50:41,559 - INFO - Processed 126900000 reads so far
2011-05-20 17:50:49,127 - INFO - Processed 127000000 reads so far
2011-05-20 17:50:56,203 - INFO - Processed 127100000 reads so far
2011-05-20 17:51:03,492 - INFO - Processed 127200000 reads so far
2011-05-20 17:51:11,474 - INFO - Processed 127300000 reads so far
2011-05-20 17:51:18,480 - INFO - Processed 127400000 reads so far
2011-05-20 17:51:23,988 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:62990608-83010608
2011-05-20 17:51:25,504 - INFO - Processed 127500000 reads so far
2011-05-20 17:51:32,997 - INFO - Processed 127600000 reads so far
2011-05-20 17:51:40,380 - INFO - Processed 127700000 reads so far
2011-05-20 17:51:47,400 - INFO - Processed 127800000 reads so far
2011-05-20 17:51:54,434 - INFO - Processed 127900000 reads so far
2011-05-20 17:52:01,268 - INFO - Processed 128000000 reads so far
2011-05-20 17:52:08,321 - INFO - Processed 128100000 reads so far
2011-05-20 17:52:15,899 - INFO - Processed 128200000 reads so far
2011-05-20 17:52:23,076 - INFO - Processed 128300000 reads so far
2011-05-20 17:52:30,266 - INFO - Processed 128400000 reads so far
2011-05-20 17:52:37,684 - INFO - Processed 128500000 reads so far
2011-05-20 17:52:44,984 - INFO - Processed 128600000 reads so far
2011-05-20 17:52:51,922 - INFO - Processed 128700000 reads so far
2011-05-20 17:52:56,565 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:82990635-103010635
2011-05-20 17:52:59,101 - INFO - Processed 128800000 reads so far
2011-05-20 17:53:06,139 - INFO - Processed 128900000 reads so far
2011-05-20 17:53:13,326 - INFO - Processed 129000000 reads so far
2011-05-20 17:53:20,819 - INFO - Processed 129100000 reads so far
2011-05-20 17:53:27,835 - INFO - Processed 129200000 reads so far
2011-05-20 17:53:35,247 - INFO - Processed 129300000 reads so far
2011-05-20 17:53:42,607 - INFO - Processed 129400000 reads so far
2011-05-20 17:53:49,675 - INFO - Processed 129500000 reads so far
2011-05-20 17:53:57,465 - INFO - Processed 129600000 reads so far
2011-05-20 17:54:04,645 - INFO - Processed 129700000 reads so far
2011-05-20 17:54:11,844 - INFO - Processed 129800000 reads so far
2011-05-20 17:54:18,996 - INFO - Processed 129900000 reads so far
2011-05-20 17:54:23,295 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:102990642-123010642
2011-05-20 17:54:26,072 - INFO - Processed 130000000 reads so far
2011-05-20 17:54:32,940 - INFO - Processed 130100000 reads so far
2011-05-20 17:54:39,979 - INFO - Processed 130200000 reads so far
2011-05-20 17:54:46,978 - INFO - Processed 130300000 reads so far
2011-05-20 17:54:54,556 - INFO - Processed 130400000 reads so far
2011-05-20 17:55:02,099 - INFO - Processed 130500000 reads so far
2011-05-20 17:55:09,753 - INFO - Processed 130600000 reads so far
2011-05-20 17:55:17,633 - INFO - Processed 130700000 reads so far
2011-05-20 17:55:25,204 - INFO - Processed 130800000 reads so far
2011-05-20 17:55:32,490 - INFO - Processed 130900000 reads so far
2011-05-20 17:55:39,486 - INFO - Processed 131000000 reads so far
2011-05-20 17:55:46,700 - INFO - Processed 131100000 reads so far
2011-05-20 17:55:54,340 - INFO - Processed 131200000 reads so far
2011-05-20 17:55:59,909 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:122990672-143010672
2011-05-20 17:56:01,961 - INFO - Processed 131300000 reads so far
2011-05-20 17:56:10,083 - INFO - Processed 131400000 reads so far
2011-05-20 17:56:17,307 - INFO - Processed 131500000 reads so far
2011-05-20 17:56:24,559 - INFO - Processed 131600000 reads so far
2011-05-20 17:56:31,612 - INFO - Processed 131700000 reads so far
2011-05-20 17:56:38,913 - INFO - Processed 131800000 reads so far
2011-05-20 17:56:45,880 - INFO - Processed 131900000 reads so far
2011-05-20 17:56:52,729 - INFO - Processed 132000000 reads so far
2011-05-20 17:57:00,091 - INFO - Processed 132100000 reads so far
2011-05-20 17:57:07,195 - INFO - Processed 132200000 reads so far
2011-05-20 17:57:14,533 - INFO - Processed 132300000 reads so far
2011-05-20 17:57:22,322 - INFO - Processed 132400000 reads so far
2011-05-20 17:57:29,768 - INFO - Processed 132500000 reads so far
2011-05-20 17:57:35,755 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5:142990674-163010674
2011-05-20 17:57:37,163 - INFO - Processed 132600000 reads so far
2011-05-20 17:57:44,588 - INFO - Processed 132700000 reads so far
2011-05-20 17:57:51,957 - INFO - Processed 132800000 reads so far
2011-05-20 17:57:59,798 - INFO - Processed 132900000 reads so far
2011-05-20 17:58:08,216 - INFO - Processed 133000000 reads so far
2011-05-20 17:58:16,630 - INFO - Processed 133100000 reads so far
2011-05-20 17:58:25,136 - INFO - Processed 133200000 reads so far
2011-05-20 17:58:25,443 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr5_random:0-20010074
2011-05-20 17:58:25,769 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:2989996-23009996
2011-05-20 17:58:34,074 - INFO - Processed 133300000 reads so far
2011-05-20 17:58:42,555 - INFO - Processed 133400000 reads so far
2011-05-20 17:58:50,405 - INFO - Processed 133500000 reads so far
2011-05-20 17:58:58,294 - INFO - Processed 133600000 reads so far
2011-05-20 17:59:05,337 - INFO - Processed 133700000 reads so far
2011-05-20 17:59:12,841 - INFO - Processed 133800000 reads so far
2011-05-20 17:59:19,848 - INFO - Processed 133900000 reads so far
2011-05-20 17:59:26,755 - INFO - Processed 134000000 reads so far
2011-05-20 17:59:33,535 - INFO - Processed 134100000 reads so far
2011-05-20 17:59:40,532 - INFO - Processed 134200000 reads so far
2011-05-20 17:59:47,640 - INFO - Processed 134300000 reads so far
2011-05-20 17:59:55,303 - INFO - Processed 134400000 reads so far
2011-05-20 18:00:02,504 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:22990018-43010018
2011-05-20 18:00:03,753 - INFO - Processed 134500000 reads so far
2011-05-20 18:00:11,573 - INFO - Processed 134600000 reads so far
2011-05-20 18:00:19,280 - INFO - Processed 134700000 reads so far
2011-05-20 18:00:26,594 - INFO - Processed 134800000 reads so far
2011-05-20 18:00:33,791 - INFO - Processed 134900000 reads so far
2011-05-20 18:00:41,011 - INFO - Processed 135000000 reads so far
2011-05-20 18:00:48,642 - INFO - Processed 135100000 reads so far
2011-05-20 18:00:56,010 - INFO - Processed 135200000 reads so far
2011-05-20 18:01:03,477 - INFO - Processed 135300000 reads so far
2011-05-20 18:01:10,980 - INFO - Processed 135400000 reads so far
2011-05-20 18:01:18,576 - INFO - Processed 135500000 reads so far
2011-05-20 18:01:26,136 - INFO - Processed 135600000 reads so far
2011-05-20 18:01:33,537 - INFO - Processed 135700000 reads so far
2011-05-20 18:01:41,246 - INFO - Processed 135800000 reads so far
2011-05-20 18:01:41,537 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:42990044-63010044
2011-05-20 18:01:48,420 - INFO - Processed 135900000 reads so far
2011-05-20 18:01:55,551 - INFO - Processed 136000000 reads so far
2011-05-20 18:02:02,745 - INFO - Processed 136100000 reads so far
2011-05-20 18:02:09,714 - INFO - Processed 136200000 reads so far
2011-05-20 18:02:16,785 - INFO - Processed 136300000 reads so far
2011-05-20 18:02:24,032 - INFO - Processed 136400000 reads so far
2011-05-20 18:02:32,211 - INFO - Processed 136500000 reads so far
2011-05-20 18:02:39,663 - INFO - Processed 136600000 reads so far
2011-05-20 18:02:47,232 - INFO - Processed 136700000 reads so far
2011-05-20 18:02:54,766 - INFO - Processed 136800000 reads so far
2011-05-20 18:03:01,932 - INFO - Processed 136900000 reads so far
2011-05-20 18:03:08,760 - INFO - Processed 137000000 reads so far
2011-05-20 18:03:15,980 - INFO - Processed 137100000 reads so far
2011-05-20 18:03:19,251 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:62990050-83010050
2011-05-20 18:03:23,048 - INFO - Processed 137200000 reads so far
2011-05-20 18:03:30,111 - INFO - Processed 137300000 reads so far
2011-05-20 18:03:37,191 - INFO - Processed 137400000 reads so far
2011-05-20 18:03:44,704 - INFO - Processed 137500000 reads so far
2011-05-20 18:03:52,367 - INFO - Processed 137600000 reads so far
2011-05-20 18:03:59,753 - INFO - Processed 137700000 reads so far
2011-05-20 18:04:07,568 - INFO - Processed 137800000 reads so far
2011-05-20 18:04:15,029 - INFO - Processed 137900000 reads so far
2011-05-20 18:04:22,468 - INFO - Processed 138000000 reads so far
2011-05-20 18:04:29,426 - INFO - Processed 138100000 reads so far
2011-05-20 18:04:36,494 - INFO - Processed 138200000 reads so far
2011-05-20 18:04:43,524 - INFO - Processed 138300000 reads so far
2011-05-20 18:04:50,876 - INFO - Processed 138400000 reads so far
2011-05-20 18:04:50,975 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:82990053-103010053
2011-05-20 18:04:58,183 - INFO - Processed 138500000 reads so far
2011-05-20 18:05:05,285 - INFO - Processed 138600000 reads so far
2011-05-20 18:05:14,132 - INFO - Processed 138700000 reads so far
2011-05-20 18:05:21,565 - INFO - Processed 138800000 reads so far
2011-05-20 18:05:28,605 - INFO - Processed 138900000 reads so far
2011-05-20 18:05:35,631 - INFO - Processed 139000000 reads so far
2011-05-20 18:05:42,550 - INFO - Processed 139100000 reads so far
2011-05-20 18:05:49,354 - INFO - Processed 139200000 reads so far
2011-05-20 18:05:56,485 - INFO - Processed 139300000 reads so far
2011-05-20 18:06:03,641 - INFO - Processed 139400000 reads so far
2011-05-20 18:06:10,781 - INFO - Processed 139500000 reads so far
2011-05-20 18:06:18,681 - INFO - Processed 139600000 reads so far
2011-05-20 18:06:25,798 - INFO - Processed 139700000 reads so far
2011-05-20 18:06:28,702 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:102990071-123010071
2011-05-20 18:06:32,670 - INFO - Processed 139800000 reads so far
2011-05-20 18:06:38,702 - INFO - Processed 139900000 reads so far
2011-05-20 18:06:44,843 - INFO - Processed 140000000 reads so far
2011-05-20 18:06:51,081 - INFO - Processed 140100000 reads so far
2011-05-20 18:06:57,397 - INFO - Processed 140200000 reads so far
2011-05-20 18:07:04,189 - INFO - Processed 140300000 reads so far
2011-05-20 18:07:10,559 - INFO - Processed 140400000 reads so far
2011-05-20 18:07:16,817 - INFO - Processed 140500000 reads so far
2011-05-20 18:07:23,153 - INFO - Processed 140600000 reads so far
2011-05-20 18:07:29,633 - INFO - Processed 140700000 reads so far
2011-05-20 18:07:35,994 - INFO - Processed 140800000 reads so far
2011-05-20 18:07:43,399 - INFO - Processed 140900000 reads so far
2011-05-20 18:07:50,744 - INFO - Processed 141000000 reads so far
2011-05-20 18:07:57,818 - INFO - Processed 141100000 reads so far
2011-05-20 18:08:04,934 - INFO - Processed 141200000 reads so far
2011-05-20 18:08:12,382 - INFO - Processed 141300000 reads so far
2011-05-20 18:08:19,762 - INFO - Processed 141400000 reads so far
2011-05-20 18:08:27,338 - INFO - Processed 141500000 reads so far
2011-05-20 18:08:34,884 - INFO - Processed 141600000 reads so far
2011-05-20 18:08:42,164 - INFO - Processed 141700000 reads so far
2011-05-20 18:08:49,705 - INFO - Processed 141800000 reads so far
2011-05-20 18:08:56,926 - INFO - Processed 141900000 reads so far
2011-05-20 18:09:04,339 - INFO - Processed 142000000 reads so far
2011-05-20 18:09:10,022 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:122990136-143010136
2011-05-20 18:09:11,848 - INFO - Processed 142100000 reads so far
2011-05-20 18:09:20,897 - INFO - Processed 142200000 reads so far
2011-05-20 18:09:28,289 - INFO - Processed 142300000 reads so far
2011-05-20 18:09:35,714 - INFO - Processed 142400000 reads so far
2011-05-20 18:09:42,919 - INFO - Processed 142500000 reads so far
2011-05-20 18:09:50,312 - INFO - Processed 142600000 reads so far
2011-05-20 18:09:57,790 - INFO - Processed 142700000 reads so far
2011-05-20 18:10:04,753 - INFO - Processed 142800000 reads so far
2011-05-20 18:10:12,121 - INFO - Processed 142900000 reads so far
2011-05-20 18:10:19,245 - INFO - Processed 143000000 reads so far
2011-05-20 18:10:26,324 - INFO - Processed 143100000 reads so far
2011-05-20 18:10:34,594 - INFO - Processed 143200000 reads so far
2011-05-20 18:10:41,995 - INFO - Processed 143300000 reads so far
2011-05-20 18:10:47,577 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr6:142990150-163010150
2011-05-20 18:10:49,475 - INFO - Processed 143400000 reads so far
2011-05-20 18:10:57,256 - INFO - Processed 143500000 reads so far
2011-05-20 18:11:04,774 - INFO - Processed 143600000 reads so far
2011-05-20 18:11:12,031 - INFO - Processed 143700000 reads so far
2011-05-20 18:11:19,576 - INFO - Processed 143800000 reads so far
2011-05-20 18:11:20,328 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:2990025-23010025
2011-05-20 18:11:26,924 - INFO - Processed 143900000 reads so far
2011-05-20 18:11:34,119 - INFO - Processed 144000000 reads so far
2011-05-20 18:11:41,383 - INFO - Processed 144100000 reads so far
2011-05-20 18:11:48,874 - INFO - Processed 144200000 reads so far
2011-05-20 18:11:57,747 - INFO - Processed 144300000 reads so far
2011-05-20 18:12:05,159 - INFO - Processed 144400000 reads so far
2011-05-20 18:12:12,367 - INFO - Processed 144500000 reads so far
2011-05-20 18:12:19,491 - INFO - Processed 144600000 reads so far
2011-05-20 18:12:26,691 - INFO - Processed 144700000 reads so far
2011-05-20 18:12:33,730 - INFO - Processed 144800000 reads so far
2011-05-20 18:12:40,094 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:22990209-43010209
2011-05-20 18:12:41,504 - INFO - Processed 144900000 reads so far
2011-05-20 18:12:48,897 - INFO - Processed 145000000 reads so far
2011-05-20 18:12:56,504 - INFO - Processed 145100000 reads so far
2011-05-20 18:13:03,830 - INFO - Processed 145200000 reads so far
2011-05-20 18:13:11,318 - INFO - Processed 145300000 reads so far
2011-05-20 18:13:18,660 - INFO - Processed 145400000 reads so far
2011-05-20 18:13:25,791 - INFO - Processed 145500000 reads so far
2011-05-20 18:13:32,783 - INFO - Processed 145600000 reads so far
2011-05-20 18:13:40,025 - INFO - Processed 145700000 reads so far
2011-05-20 18:13:47,619 - INFO - Processed 145800000 reads so far
2011-05-20 18:13:54,603 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:46352873-66372873
2011-05-20 18:13:54,888 - INFO - Processed 145900000 reads so far
2011-05-20 18:14:01,957 - INFO - Processed 146000000 reads so far
2011-05-20 18:14:09,443 - INFO - Processed 146100000 reads so far
2011-05-20 18:14:16,606 - INFO - Processed 146200000 reads so far
2011-05-20 18:14:24,043 - INFO - Processed 146300000 reads so far
2011-05-20 18:14:31,855 - INFO - Processed 146400000 reads so far
2011-05-20 18:14:38,802 - INFO - Processed 146500000 reads so far
2011-05-20 18:14:45,916 - INFO - Processed 146600000 reads so far
2011-05-20 18:14:54,150 - INFO - Processed 146700000 reads so far
2011-05-20 18:15:01,175 - INFO - Processed 146800000 reads so far
2011-05-20 18:15:10,136 - INFO - Processed 146900000 reads so far
2011-05-20 18:15:17,172 - INFO - Processed 147000000 reads so far
2011-05-20 18:15:24,908 - INFO - Processed 147100000 reads so far
2011-05-20 18:15:32,247 - INFO - Processed 147200000 reads so far
2011-05-20 18:15:32,572 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:66352878-86372878
2011-05-20 18:15:39,269 - INFO - Processed 147300000 reads so far
2011-05-20 18:15:47,012 - INFO - Processed 147400000 reads so far
2011-05-20 18:15:54,403 - INFO - Processed 147500000 reads so far
2011-05-20 18:16:01,433 - INFO - Processed 147600000 reads so far
2011-05-20 18:16:08,572 - INFO - Processed 147700000 reads so far
2011-05-20 18:16:16,233 - INFO - Processed 147800000 reads so far
2011-05-20 18:16:23,413 - INFO - Processed 147900000 reads so far
2011-05-20 18:16:30,597 - INFO - Processed 148000000 reads so far
2011-05-20 18:16:38,076 - INFO - Processed 148100000 reads so far
2011-05-20 18:16:45,090 - INFO - Processed 148200000 reads so far
2011-05-20 18:16:52,257 - INFO - Processed 148300000 reads so far
2011-05-20 18:16:59,411 - INFO - Processed 148400000 reads so far
2011-05-20 18:17:06,616 - INFO - Processed 148500000 reads so far
2011-05-20 18:17:10,769 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:86352897-106372897
2011-05-20 18:17:14,282 - INFO - Processed 148600000 reads so far
2011-05-20 18:17:21,598 - INFO - Processed 148700000 reads so far
2011-05-20 18:17:28,870 - INFO - Processed 148800000 reads so far
2011-05-20 18:17:36,024 - INFO - Processed 148900000 reads so far
2011-05-20 18:17:44,136 - INFO - Processed 149000000 reads so far
2011-05-20 18:17:51,485 - INFO - Processed 149100000 reads so far
2011-05-20 18:17:58,523 - INFO - Processed 149200000 reads so far
2011-05-20 18:18:05,798 - INFO - Processed 149300000 reads so far
2011-05-20 18:18:12,628 - INFO - Processed 149400000 reads so far
2011-05-20 18:18:19,964 - INFO - Processed 149500000 reads so far
2011-05-20 18:18:27,099 - INFO - Processed 149600000 reads so far
2011-05-20 18:18:34,332 - INFO - Processed 149700000 reads so far
2011-05-20 18:18:41,257 - INFO - Processed 149800000 reads so far
2011-05-20 18:18:45,536 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:106352952-126372952
2011-05-20 18:18:48,892 - INFO - Processed 149900000 reads so far
2011-05-20 18:18:56,247 - INFO - Processed 150000000 reads so far
2011-05-20 18:19:03,562 - INFO - Processed 150100000 reads so far
2011-05-20 18:19:10,742 - INFO - Processed 150200000 reads so far
2011-05-20 18:19:18,084 - INFO - Processed 150300000 reads so far
2011-05-20 18:19:25,740 - INFO - Processed 150400000 reads so far
2011-05-20 18:19:32,956 - INFO - Processed 150500000 reads so far
2011-05-20 18:19:40,224 - INFO - Processed 150600000 reads so far
2011-05-20 18:19:47,505 - INFO - Processed 150700000 reads so far
2011-05-20 18:19:54,587 - INFO - Processed 150800000 reads so far
2011-05-20 18:20:02,005 - INFO - Processed 150900000 reads so far
2011-05-20 18:20:09,074 - INFO - Processed 151000000 reads so far
2011-05-20 18:20:16,020 - INFO - Processed 151100000 reads so far
2011-05-20 18:20:21,894 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:126352983-146372983
2011-05-20 18:20:23,206 - INFO - Processed 151200000 reads so far
2011-05-20 18:20:30,419 - INFO - Processed 151300000 reads so far
2011-05-20 18:20:37,594 - INFO - Processed 151400000 reads so far
2011-05-20 18:20:44,937 - INFO - Processed 151500000 reads so far
2011-05-20 18:20:52,119 - INFO - Processed 151600000 reads so far
2011-05-20 18:20:59,591 - INFO - Processed 151700000 reads so far
2011-05-20 18:21:07,127 - INFO - Processed 151800000 reads so far
2011-05-20 18:21:14,292 - INFO - Processed 151900000 reads so far
2011-05-20 18:21:21,152 - INFO - Processed 152000000 reads so far
2011-05-20 18:21:28,089 - INFO - Processed 152100000 reads so far
2011-05-20 18:21:35,312 - INFO - Processed 152200000 reads so far
2011-05-20 18:21:42,263 - INFO - Processed 152300000 reads so far
2011-05-20 18:21:49,565 - INFO - Processed 152400000 reads so far
2011-05-20 18:21:57,233 - INFO - Processed 152500000 reads so far
2011-05-20 18:22:00,571 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7:146352993-166372993
2011-05-20 18:22:04,730 - INFO - Processed 152600000 reads so far
2011-05-20 18:22:11,969 - INFO - Processed 152700000 reads so far
2011-05-20 18:22:19,326 - INFO - Processed 152800000 reads so far
2011-05-20 18:22:27,561 - INFO - Processed 152900000 reads so far
2011-05-20 18:22:32,369 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr7_random:0-20010095
2011-05-20 18:22:33,415 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:2990018-23010018
2011-05-20 18:22:34,930 - INFO - Processed 153000000 reads so far
2011-05-20 18:22:42,083 - INFO - Processed 153100000 reads so far
2011-05-20 18:22:48,955 - INFO - Processed 153200000 reads so far
2011-05-20 18:22:56,173 - INFO - Processed 153300000 reads so far
2011-05-20 18:23:03,557 - INFO - Processed 153400000 reads so far
2011-05-20 18:23:10,658 - INFO - Processed 153500000 reads so far
2011-05-20 18:23:17,969 - INFO - Processed 153600000 reads so far
2011-05-20 18:23:25,148 - INFO - Processed 153700000 reads so far
2011-05-20 18:23:32,128 - INFO - Processed 153800000 reads so far
2011-05-20 18:23:39,210 - INFO - Processed 153900000 reads so far
2011-05-20 18:23:46,313 - INFO - Processed 154000000 reads so far
2011-05-20 18:23:53,293 - INFO - Processed 154100000 reads so far
2011-05-20 18:24:00,129 - INFO - Processed 154200000 reads so far
2011-05-20 18:24:06,517 - INFO - Processed 154300000 reads so far
2011-05-20 18:24:09,754 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:22990023-43010023
2011-05-20 18:24:13,705 - INFO - Processed 154400000 reads so far
2011-05-20 18:24:22,407 - INFO - Processed 154500000 reads so far
2011-05-20 18:24:29,778 - INFO - Processed 154600000 reads so far
2011-05-20 18:24:36,994 - INFO - Processed 154700000 reads so far
2011-05-20 18:24:45,121 - INFO - Processed 154800000 reads so far
2011-05-20 18:24:52,652 - INFO - Processed 154900000 reads so far
2011-05-20 18:25:00,026 - INFO - Processed 155000000 reads so far
2011-05-20 18:25:07,518 - INFO - Processed 155100000 reads so far
2011-05-20 18:25:14,624 - INFO - Processed 155200000 reads so far
2011-05-20 18:25:21,756 - INFO - Processed 155300000 reads so far
2011-05-20 18:25:29,215 - INFO - Processed 155400000 reads so far
2011-05-20 18:25:36,738 - INFO - Processed 155500000 reads so far
2011-05-20 18:25:43,815 - INFO - Processed 155600000 reads so far
2011-05-20 18:25:46,630 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:42990043-63010043
2011-05-20 18:25:50,988 - INFO - Processed 155700000 reads so far
2011-05-20 18:25:58,245 - INFO - Processed 155800000 reads so far
2011-05-20 18:26:05,790 - INFO - Processed 155900000 reads so far
2011-05-20 18:26:12,917 - INFO - Processed 156000000 reads so far
2011-05-20 18:26:19,937 - INFO - Processed 156100000 reads so far
2011-05-20 18:26:26,870 - INFO - Processed 156200000 reads so far
2011-05-20 18:26:33,962 - INFO - Processed 156300000 reads so far
2011-05-20 18:26:41,288 - INFO - Processed 156400000 reads so far
2011-05-20 18:26:48,308 - INFO - Processed 156500000 reads so far
2011-05-20 18:26:55,608 - INFO - Processed 156600000 reads so far
2011-05-20 18:27:02,839 - INFO - Processed 156700000 reads so far
2011-05-20 18:27:09,244 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:62990058-83010058
2011-05-20 18:27:10,054 - INFO - Processed 156800000 reads so far
2011-05-20 18:27:17,103 - INFO - Processed 156900000 reads so far
2011-05-20 18:27:24,339 - INFO - Processed 157000000 reads so far
2011-05-20 18:27:32,186 - INFO - Processed 157100000 reads so far
2011-05-20 18:27:39,523 - INFO - Processed 157200000 reads so far
2011-05-20 18:27:46,881 - INFO - Processed 157300000 reads so far
2011-05-20 18:27:54,718 - INFO - Processed 157400000 reads so far
2011-05-20 18:28:02,257 - INFO - Processed 157500000 reads so far
2011-05-20 18:28:09,526 - INFO - Processed 157600000 reads so far
2011-05-20 18:28:17,328 - INFO - Processed 157700000 reads so far
2011-05-20 18:28:24,580 - INFO - Processed 157800000 reads so far
2011-05-20 18:28:31,799 - INFO - Processed 157900000 reads so far
2011-05-20 18:28:38,988 - INFO - Processed 158000000 reads so far
2011-05-20 18:28:46,184 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:82990079-103010079
2011-05-20 18:28:46,322 - INFO - Processed 158100000 reads so far
2011-05-20 18:28:53,420 - INFO - Processed 158200000 reads so far
2011-05-20 18:29:00,826 - INFO - Processed 158300000 reads so far
2011-05-20 18:29:08,333 - INFO - Processed 158400000 reads so far
2011-05-20 18:29:15,442 - INFO - Processed 158500000 reads so far
2011-05-20 18:29:22,465 - INFO - Processed 158600000 reads so far
2011-05-20 18:29:29,770 - INFO - Processed 158700000 reads so far
2011-05-20 18:29:37,209 - INFO - Processed 158800000 reads so far
2011-05-20 18:29:44,734 - INFO - Processed 158900000 reads so far
2011-05-20 18:29:52,453 - INFO - Processed 159000000 reads so far
2011-05-20 18:30:00,394 - INFO - Processed 159100000 reads so far
2011-05-20 18:30:07,261 - INFO - Processed 159200000 reads so far
2011-05-20 18:30:14,317 - INFO - Processed 159300000 reads so far
2011-05-20 18:30:21,359 - INFO - Processed 159400000 reads so far
2011-05-20 18:30:22,028 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:102990116-123010116
2011-05-20 18:30:28,746 - INFO - Processed 159500000 reads so far
2011-05-20 18:30:35,975 - INFO - Processed 159600000 reads so far
2011-05-20 18:30:43,134 - INFO - Processed 159700000 reads so far
2011-05-20 18:30:50,978 - INFO - Processed 159800000 reads so far
2011-05-20 18:30:58,377 - INFO - Processed 159900000 reads so far
2011-05-20 18:31:05,322 - INFO - Processed 160000000 reads so far
2011-05-20 18:31:12,645 - INFO - Processed 160100000 reads so far
2011-05-20 18:31:19,964 - INFO - Processed 160200000 reads so far
2011-05-20 18:31:27,180 - INFO - Processed 160300000 reads so far
2011-05-20 18:31:34,285 - INFO - Processed 160400000 reads so far
2011-05-20 18:31:41,472 - INFO - Processed 160500000 reads so far
2011-05-20 18:31:48,578 - INFO - Processed 160600000 reads so far
2011-05-20 18:31:56,240 - INFO - Processed 160700000 reads so far
2011-05-20 18:31:58,154 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8:122990124-143010124
2011-05-20 18:32:03,546 - INFO - Processed 160800000 reads so far
2011-05-20 18:32:11,562 - INFO - Processed 160900000 reads so far
2011-05-20 18:32:20,326 - INFO - Processed 161000000 reads so far
2011-05-20 18:32:27,722 - INFO - Processed 161100000 reads so far
2011-05-20 18:32:34,830 - INFO - Processed 161200000 reads so far
2011-05-20 18:32:42,056 - INFO - Processed 161300000 reads so far
2011-05-20 18:32:42,619 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr8_random:0-20010018
2011-05-20 18:32:48,455 - INFO - Processed 161400000 reads so far
2011-05-20 18:32:51,645 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:2989969-23009969
2011-05-20 18:32:54,427 - INFO - Processed 161500000 reads so far
2011-05-20 18:33:01,089 - INFO - Processed 161600000 reads so far
2011-05-20 18:33:07,178 - INFO - Processed 161700000 reads so far
2011-05-20 18:33:13,153 - INFO - Processed 161800000 reads so far
2011-05-20 18:33:19,045 - INFO - Processed 161900000 reads so far
2011-05-20 18:33:24,957 - INFO - Processed 162000000 reads so far
2011-05-20 18:33:31,181 - INFO - Processed 162100000 reads so far
2011-05-20 18:33:37,592 - INFO - Processed 162200000 reads so far
2011-05-20 18:33:43,649 - INFO - Processed 162300000 reads so far
2011-05-20 18:33:49,891 - INFO - Processed 162400000 reads so far
2011-05-20 18:33:56,179 - INFO - Processed 162500000 reads so far
2011-05-20 18:34:02,327 - INFO - Processed 162600000 reads so far
2011-05-20 18:34:08,165 - INFO - Processed 162700000 reads so far
2011-05-20 18:34:13,912 - INFO - Processed 162800000 reads so far
2011-05-20 18:34:19,763 - INFO - Processed 162900000 reads so far
2011-05-20 18:34:25,954 - INFO - Processed 163000000 reads so far
2011-05-20 18:34:31,987 - INFO - Processed 163100000 reads so far
2011-05-20 18:34:38,161 - INFO - Processed 163200000 reads so far
2011-05-20 18:34:44,159 - INFO - Processed 163300000 reads so far
2011-05-20 18:34:50,777 - INFO - Processed 163400000 reads so far
2011-05-20 18:34:56,644 - INFO - Processed 163500000 reads so far
2011-05-20 18:35:02,816 - INFO - Processed 163600000 reads so far
2011-05-20 18:35:09,114 - INFO - Processed 163700000 reads so far
2011-05-20 18:35:15,534 - INFO - Processed 163800000 reads so far
2011-05-20 18:35:21,918 - INFO - Processed 163900000 reads so far
2011-05-20 18:35:27,997 - INFO - Processed 164000000 reads so far
2011-05-20 18:35:34,247 - INFO - Processed 164100000 reads so far
2011-05-20 18:35:40,665 - INFO - Processed 164200000 reads so far
2011-05-20 18:35:46,823 - INFO - Processed 164300000 reads so far
2011-05-20 18:35:52,745 - INFO - Processed 164400000 reads so far
2011-05-20 18:35:58,681 - INFO - Processed 164500000 reads so far
2011-05-20 18:36:04,958 - INFO - Processed 164600000 reads so far
2011-05-20 18:36:11,156 - INFO - Processed 164700000 reads so far
2011-05-20 18:36:17,087 - INFO - Processed 164800000 reads so far
2011-05-20 18:36:23,252 - INFO - Processed 164900000 reads so far
2011-05-20 18:36:29,363 - INFO - Processed 165000000 reads so far
2011-05-20 18:36:35,643 - INFO - Processed 165100000 reads so far
2011-05-20 18:36:41,923 - INFO - Processed 165200000 reads so far
2011-05-20 18:36:48,362 - INFO - Processed 165300000 reads so far
2011-05-20 18:36:54,236 - INFO - Processed 165400000 reads so far
2011-05-20 18:36:59,957 - INFO - Processed 165500000 reads so far
2011-05-20 18:37:06,035 - INFO - Processed 165600000 reads so far
2011-05-20 18:37:11,953 - INFO - Processed 165700000 reads so far
2011-05-20 18:37:17,707 - INFO - Processed 165800000 reads so far
2011-05-20 18:37:23,304 - INFO - Processed 165900000 reads so far
2011-05-20 18:37:29,226 - INFO - Processed 166000000 reads so far
2011-05-20 18:37:35,286 - INFO - Processed 166100000 reads so far
2011-05-20 18:37:41,221 - INFO - Processed 166200000 reads so far
2011-05-20 18:37:47,672 - INFO - Processed 166300000 reads so far
2011-05-20 18:37:53,787 - INFO - Processed 166400000 reads so far
2011-05-20 18:38:00,873 - INFO - Processed 166500000 reads so far
2011-05-20 18:38:07,556 - INFO - Processed 166600000 reads so far
2011-05-20 18:38:13,513 - INFO - Processed 166700000 reads so far
2011-05-20 18:38:19,632 - INFO - Processed 166800000 reads so far
2011-05-20 18:38:25,699 - INFO - Processed 166900000 reads so far
2011-05-20 18:38:31,550 - INFO - Processed 167000000 reads so far
2011-05-20 18:38:37,475 - INFO - Processed 167100000 reads so far
2011-05-20 18:38:43,759 - INFO - Processed 167200000 reads so far
2011-05-20 18:38:49,944 - INFO - Processed 167300000 reads so far
2011-05-20 18:38:56,426 - INFO - Processed 167400000 reads so far
2011-05-20 18:39:02,254 - INFO - Processed 167500000 reads so far
2011-05-20 18:39:08,558 - INFO - Processed 167600000 reads so far
2011-05-20 18:39:15,214 - INFO - Processed 167700000 reads so far
2011-05-20 18:39:21,741 - INFO - Processed 167800000 reads so far
2011-05-20 18:39:27,910 - INFO - Processed 167900000 reads so far
2011-05-20 18:39:33,951 - INFO - Processed 168000000 reads so far
2011-05-20 18:39:40,044 - INFO - Processed 168100000 reads so far
2011-05-20 18:39:46,261 - INFO - Processed 168200000 reads so far
2011-05-20 18:39:52,381 - INFO - Processed 168300000 reads so far
2011-05-20 18:39:58,544 - INFO - Processed 168400000 reads so far
2011-05-20 18:40:05,991 - INFO - Processed 168500000 reads so far
2011-05-20 18:40:13,251 - INFO - Processed 168600000 reads so far
2011-05-20 18:40:20,595 - INFO - Processed 168700000 reads so far
2011-05-20 18:40:27,600 - INFO - Processed 168800000 reads so far
2011-05-20 18:40:34,640 - INFO - Processed 168900000 reads so far
2011-05-20 18:40:42,666 - INFO - Processed 169000000 reads so far
2011-05-20 18:40:49,697 - INFO - Processed 169100000 reads so far
2011-05-20 18:40:57,001 - INFO - Processed 169200000 reads so far
2011-05-20 18:41:04,075 - INFO - Processed 169300000 reads so far
2011-05-20 18:41:11,325 - INFO - Processed 169400000 reads so far
2011-05-20 18:41:18,448 - INFO - Processed 169500000 reads so far
2011-05-20 18:41:26,029 - INFO - Processed 169600000 reads so far
2011-05-20 18:41:31,967 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:22989992-43009992
2011-05-20 18:41:33,494 - INFO - Processed 169700000 reads so far
2011-05-20 18:41:40,615 - INFO - Processed 169800000 reads so far
2011-05-20 18:41:47,924 - INFO - Processed 169900000 reads so far
2011-05-20 18:41:55,403 - INFO - Processed 170000000 reads so far
2011-05-20 18:42:02,517 - INFO - Processed 170100000 reads so far
2011-05-20 18:42:09,439 - INFO - Processed 170200000 reads so far
2011-05-20 18:42:16,607 - INFO - Processed 170300000 reads so far
2011-05-20 18:42:23,586 - INFO - Processed 170400000 reads so far
2011-05-20 18:42:30,754 - INFO - Processed 170500000 reads so far
2011-05-20 18:42:37,131 - INFO - Processed 170600000 reads so far
2011-05-20 18:42:43,759 - INFO - Processed 170700000 reads so far
2011-05-20 18:42:50,905 - INFO - Processed 170800000 reads so far
2011-05-20 18:42:58,435 - INFO - Processed 170900000 reads so far
2011-05-20 18:43:06,020 - INFO - Processed 171000000 reads so far
2011-05-20 18:43:13,660 - INFO - Processed 171100000 reads so far
2011-05-20 18:43:18,681 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:42990031-63010031
2011-05-20 18:43:21,067 - INFO - Processed 171200000 reads so far
2011-05-20 18:43:28,320 - INFO - Processed 171300000 reads so far
2011-05-20 18:43:35,414 - INFO - Processed 171400000 reads so far
2011-05-20 18:43:42,565 - INFO - Processed 171500000 reads so far
2011-05-20 18:43:49,793 - INFO - Processed 171600000 reads so far
2011-05-20 18:43:56,856 - INFO - Processed 171700000 reads so far
2011-05-20 18:44:03,988 - INFO - Processed 171800000 reads so far
2011-05-20 18:44:11,084 - INFO - Processed 171900000 reads so far
2011-05-20 18:44:18,147 - INFO - Processed 172000000 reads so far
2011-05-20 18:44:25,318 - INFO - Processed 172100000 reads so far
2011-05-20 18:44:32,849 - INFO - Processed 172200000 reads so far
2011-05-20 18:44:40,421 - INFO - Processed 172300000 reads so far
2011-05-20 18:44:47,719 - INFO - Processed 172400000 reads so far
2011-05-20 18:44:55,019 - INFO - Processed 172500000 reads so far
2011-05-20 18:44:55,895 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:62990089-83010089
2011-05-20 18:45:02,454 - INFO - Processed 172600000 reads so far
2011-05-20 18:45:10,013 - INFO - Processed 172700000 reads so far
2011-05-20 18:45:17,577 - INFO - Processed 172800000 reads so far
2011-05-20 18:45:24,870 - INFO - Processed 172900000 reads so far
2011-05-20 18:45:31,894 - INFO - Processed 173000000 reads so far
2011-05-20 18:45:39,133 - INFO - Processed 173100000 reads so far
2011-05-20 18:45:47,206 - INFO - Processed 173200000 reads so far
2011-05-20 18:45:54,443 - INFO - Processed 173300000 reads so far
2011-05-20 18:46:01,491 - INFO - Processed 173400000 reads so far
2011-05-20 18:46:08,637 - INFO - Processed 173500000 reads so far
2011-05-20 18:46:15,821 - INFO - Processed 173600000 reads so far
2011-05-20 18:46:23,307 - INFO - Processed 173700000 reads so far
2011-05-20 18:46:30,268 - INFO - Processed 173800000 reads so far
2011-05-20 18:46:31,894 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:82990105-103010105
2011-05-20 18:46:37,785 - INFO - Processed 173900000 reads so far
2011-05-20 18:46:44,994 - INFO - Processed 174000000 reads so far
2011-05-20 18:46:52,132 - INFO - Processed 174100000 reads so far
2011-05-20 18:46:59,200 - INFO - Processed 174200000 reads so far
2011-05-20 18:47:06,823 - INFO - Processed 174300000 reads so far
2011-05-20 18:47:14,462 - INFO - Processed 174400000 reads so far
2011-05-20 18:47:21,550 - INFO - Processed 174500000 reads so far
2011-05-20 18:47:28,450 - INFO - Processed 174600000 reads so far
2011-05-20 18:47:35,768 - INFO - Processed 174700000 reads so far
2011-05-20 18:47:43,134 - INFO - Processed 174800000 reads so far
2011-05-20 18:47:50,429 - INFO - Processed 174900000 reads so far
2011-05-20 18:47:57,324 - INFO - Processed 175000000 reads so far
2011-05-20 18:48:04,586 - INFO - Processed 175100000 reads so far
2011-05-20 18:48:07,071 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:102990164-123010164
2011-05-20 18:48:12,269 - INFO - Processed 175200000 reads so far
2011-05-20 18:48:19,592 - INFO - Processed 175300000 reads so far
2011-05-20 18:48:26,834 - INFO - Processed 175400000 reads so far
2011-05-20 18:48:34,563 - INFO - Processed 175500000 reads so far
2011-05-20 18:48:41,882 - INFO - Processed 175600000 reads so far
2011-05-20 18:48:49,128 - INFO - Processed 175700000 reads so far
2011-05-20 18:48:56,086 - INFO - Processed 175800000 reads so far
2011-05-20 18:49:03,434 - INFO - Processed 175900000 reads so far
2011-05-20 18:49:10,505 - INFO - Processed 176000000 reads so far
2011-05-20 18:49:17,762 - INFO - Processed 176100000 reads so far
2011-05-20 18:49:24,833 - INFO - Processed 176200000 reads so far
2011-05-20 18:49:32,742 - INFO - Processed 176300000 reads so far
2011-05-20 18:49:39,688 - INFO - Processed 176400000 reads so far
2011-05-20 18:49:44,788 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9:122990197-143010197
2011-05-20 18:49:46,934 - INFO - Processed 176500000 reads so far
2011-05-20 18:49:49,948 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chr9_random:0-20010005
2011-05-20 18:49:52,437 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrM:0-20010000
2011-05-20 18:49:53,547 - INFO - Processed 176600000 reads so far
2011-05-20 18:49:58,726 - INFO - Processed 176700000 reads so far
2011-05-20 18:49:59,205 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrUn_random:0-20010000
2011-05-20 18:50:05,693 - INFO - Processed 176800000 reads so far
2011-05-20 18:50:12,069 - INFO - Processed 176900000 reads so far
2011-05-20 18:50:19,932 - INFO - Processed 177000000 reads so far
2011-05-20 18:50:26,582 - INFO - Processed 177100000 reads so far
2011-05-20 18:50:30,378 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:2990054-23010054
2011-05-20 18:50:34,266 - INFO - Processed 177200000 reads so far
2011-05-20 18:50:41,651 - INFO - Processed 177300000 reads so far
2011-05-20 18:50:49,205 - INFO - Processed 177400000 reads so far
2011-05-20 18:50:57,347 - INFO - Processed 177500000 reads so far
2011-05-20 18:51:05,176 - INFO - Processed 177600000 reads so far
2011-05-20 18:51:12,627 - INFO - Processed 177700000 reads so far
2011-05-20 18:51:20,204 - INFO - Processed 177800000 reads so far
2011-05-20 18:51:24,706 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:22990094-43010094
2011-05-20 18:51:28,505 - INFO - Processed 177900000 reads so far
2011-05-20 18:51:36,024 - INFO - Processed 178000000 reads so far
2011-05-20 18:51:43,502 - INFO - Processed 178100000 reads so far
2011-05-20 18:51:50,827 - INFO - Processed 178200000 reads so far
2011-05-20 18:51:58,633 - INFO - Processed 178300000 reads so far
2011-05-20 18:52:06,443 - INFO - Processed 178400000 reads so far
2011-05-20 18:52:14,073 - INFO - Processed 178500000 reads so far
2011-05-20 18:52:17,315 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:42990112-63010112
2011-05-20 18:52:21,723 - INFO - Processed 178600000 reads so far
2011-05-20 18:52:29,458 - INFO - Processed 178700000 reads so far
2011-05-20 18:52:37,241 - INFO - Processed 178800000 reads so far
2011-05-20 18:52:44,914 - INFO - Processed 178900000 reads so far
2011-05-20 18:52:52,835 - INFO - Processed 179000000 reads so far
2011-05-20 18:53:00,208 - INFO - Processed 179100000 reads so far
2011-05-20 18:53:07,801 - INFO - Processed 179200000 reads so far
2011-05-20 18:53:10,737 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:62990126-83010126
2011-05-20 18:53:15,648 - INFO - Processed 179300000 reads so far
2011-05-20 18:53:23,307 - INFO - Processed 179400000 reads so far
2011-05-20 18:53:31,015 - INFO - Processed 179500000 reads so far
2011-05-20 18:53:38,926 - INFO - Processed 179600000 reads so far
2011-05-20 18:53:46,754 - INFO - Processed 179700000 reads so far
2011-05-20 18:53:54,758 - INFO - Processed 179800000 reads so far
2011-05-20 18:54:04,564 - INFO - Processed 179900000 reads so far
2011-05-20 18:54:06,110 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:82990153-103010153
2011-05-20 18:54:12,245 - INFO - Processed 180000000 reads so far
2011-05-20 18:54:20,547 - INFO - Processed 180100000 reads so far
2011-05-20 18:54:28,560 - INFO - Processed 180200000 reads so far
2011-05-20 18:54:36,160 - INFO - Processed 180300000 reads so far
2011-05-20 18:54:43,964 - INFO - Processed 180400000 reads so far
2011-05-20 18:54:52,222 - INFO - Processed 180500000 reads so far
2011-05-20 18:54:59,444 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:102990220-123010220
2011-05-20 18:54:59,839 - INFO - Processed 180600000 reads so far
2011-05-20 18:55:07,175 - INFO - Processed 180700000 reads so far
2011-05-20 18:55:14,611 - INFO - Processed 180800000 reads so far
2011-05-20 18:55:22,364 - INFO - Processed 180900000 reads so far
2011-05-20 18:55:30,174 - INFO - Processed 181000000 reads so far
2011-05-20 18:55:37,591 - INFO - Processed 181100000 reads so far
2011-05-20 18:55:44,921 - INFO - Processed 181200000 reads so far
2011-05-20 18:55:51,708 - INFO - Processed 181300000 reads so far
2011-05-20 18:55:57,705 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:122990244-143010244
2011-05-20 18:55:58,446 - INFO - Processed 181400000 reads so far
2011-05-20 18:56:06,339 - INFO - Processed 181500000 reads so far
2011-05-20 18:56:13,798 - INFO - Processed 181600000 reads so far
2011-05-20 18:56:21,629 - INFO - Processed 181700000 reads so far
2011-05-20 18:56:29,330 - INFO - Processed 181800000 reads so far
2011-05-20 18:56:36,946 - INFO - Processed 181900000 reads so far
2011-05-20 18:56:43,887 - INFO - Processed 182000000 reads so far
2011-05-20 18:56:51,238 - INFO - Processed 182100000 reads so far
2011-05-20 18:56:53,376 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:142990295-163010295
2011-05-20 18:56:59,072 - INFO - Processed 182200000 reads so far
2011-05-20 18:57:06,752 - INFO - Processed 182300000 reads so far
2011-05-20 18:57:15,069 - INFO - Processed 182400000 reads so far
2011-05-20 18:57:23,174 - INFO - Processed 182500000 reads so far
2011-05-20 18:57:31,052 - INFO - Processed 182600000 reads so far
2011-05-20 18:57:38,703 - INFO - Processed 182700000 reads so far
2011-05-20 18:57:45,268 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX:162990300-183010300
2011-05-20 18:57:46,199 - INFO - Processed 182800000 reads so far
2011-05-20 18:57:53,868 - INFO - Processed 182900000 reads so far
2011-05-20 18:57:58,498 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrX_random:0-20010049
2011-05-20 18:58:00,366 - INFO - Processed 183000000 reads so far
2011-05-20 18:58:01,984 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY:0-20010008
2011-05-20 18:58:07,701 - INFO - Processed 183100000 reads so far
2011-05-20 18:58:09,173 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:0-20010209
2011-05-20 18:58:15,073 - INFO - Processed 183200000 reads so far
2011-05-20 18:58:23,005 - INFO - Processed 183300000 reads so far
2011-05-20 18:58:29,554 - INFO - Processed 183400000 reads so far
2011-05-20 18:58:36,814 - INFO - Processed 183500000 reads so far
2011-05-20 18:58:44,025 - INFO - Processed 183600000 reads so far
2011-05-20 18:58:51,353 - INFO - Processed 183700000 reads so far
2011-05-20 18:58:57,740 - INFO - Processed 183800000 reads so far
2011-05-20 18:59:03,998 - INFO - Processed 183900000 reads so far
2011-05-20 18:59:10,472 - INFO - Processed 184000000 reads so far
2011-05-20 18:59:17,661 - INFO - Processed 184100000 reads so far
2011-05-20 18:59:19,173 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:19990559-40010559
2011-05-20 18:59:24,851 - INFO - Processed 184200000 reads so far
2011-05-20 18:59:32,016 - INFO - Processed 184300000 reads so far
2011-05-20 18:59:39,834 - INFO - Processed 184400000 reads so far
2011-05-20 18:59:47,139 - INFO - Processed 184500000 reads so far
2011-05-20 18:59:54,562 - INFO - Processed 184600000 reads so far
2011-05-20 18:59:58,477 - INFO - Constructing variant generator with minMapQ=0, minFlank=0, minBaseQual=5. Region = chrY_random:39990570-60010570
2011-05-20 19:00:01,634 - INFO - Processed 184700000 reads so far
2011-05-20 19:00:08,474 - INFO - Processed 184800000 reads so far
2011-05-20 19:00:15,866 - INFO - Processed 184900000 reads so far
2011-05-20 19:00:22,750 - INFO - Processed 185000000 reads so far
2011-05-20 19:00:29,883 - INFO - Processed 185100000 reads so far
2011-05-20 19:00:36,736 - INFO - Processed 185200000 reads so far
2011-05-20 19:00:43,409 - INFO - Processed 185300000 reads so far
2011-05-20 19:00:50,467 - INFO - Processed 185400000 reads so far
2011-05-20 19:00:54,394 - INFO - Processed 185500000 reads so far
2011-05-20 19:00:57,496 - INFO - Processed 185600000 reads so far
2011-05-20 19:01:01,012 - INFO - Processed 185700000 reads so far
2011-05-20 19:01:03,911 - INFO - Processed 185800000 reads so far
2011-05-20 19:01:06,830 - INFO - Processed 185900000 reads so far
2011-05-20 19:01:10,314 - INFO - Processed 186000000 reads so far
2011-05-20 19:01:13,786 - INFO - Processed 186100000 reads so far
2011-05-20 19:01:18,411 - INFO - Processed 186200000 reads so far
2011-05-20 19:01:22,718 - INFO - Processed 186300000 reads so far
2011-05-20 19:01:26,736 - INFO - Processed 186400000 reads so far
2011-05-20 19:01:29,490 - INFO - Processed 186500000 reads so far
2011-05-20 19:01:32,428 - INFO - Processed 186600000 reads so far
2011-05-20 19:01:35,539 - INFO - Processed 186700000 reads so far
2011-05-20 19:01:38,885 - INFO - Processed 186800000 reads so far
2011-05-20 19:01:41,791 - INFO - Processed 186900000 reads so far
2011-05-20 19:01:44,714 - INFO - Processed 187000000 reads so far
2011-05-20 19:01:48,768 - INFO - Processed 187100000 reads so far
2011-05-20 19:01:52,263 - INFO - Processed 187200000 reads so far
2011-05-20 19:01:55,240 - INFO - Processed 187300000 reads so far
2011-05-20 19:01:58,477 - INFO - Processed 187400000 reads so far
2011-05-20 19:02:01,230 - INFO - Processed 187500000 reads so far
2011-05-20 19:02:04,320 - INFO - Processed 187600000 reads so far
2011-05-20 19:02:07,253 - INFO - Finished loading data. Outputting QC metrics
2011-05-20 19:02:23,803 - INFO - Finished outputting QC metrics
2011-05-20 19:02:23,899 - INFO - Finished generating QC metrics