2013-11-30 realign_pe_bams
 21:18:16 - FastQ files retrieved WTCHG_54189_12.bam -> ./WTCHG_54189_12.1.fastq -> ./WTCHG_54189_12.2.fastq


2013-11-30 realign_pe_bams
 21:48:08 - FastQ files retrieved WTCHG_54189_12.bam -> ./WTCHG_54189_12.1.fastq -> ./WTCHG_54189_12.2.fastq


2013-12-01 realign_pe_bams
 08:36:07 - bwa aligned /Net/sparse/data/scratch/celegans/temp/caenorhabditis_elegans ./WTCHG_54189_12.1.fastq -> ./WTCHG_54189_12.1.sai

 08:38:40 - bwa aligned /Net/sparse/data/scratch/celegans/temp/caenorhabditis_elegans ./WTCHG_54189_12.2.fastq -> ./WTCHG_54189_12.2.sai

 08:51:35 - bwa_to_bam_format /Net/sparse/data/scratch/celegans/temp/caenorhabditis_elegans ('./WTCHG_54189_12.1.sai', './WTCHG_54189_12.2.sai') -> /data/maqgene/reads/CB7109-2/WTCHG_54189_12.bwa_realigned_bam

 08:56:05 - sort_bam_file %(input_file)s -> %(output_file)s