emmadat A sample input datasets for EMMA emma.REML.t Performs an efficient association mapping via F-test after estimating variance component using REML (Restricted Maximum Likleihood). emma.ML.LRT Performs an efficient association mapping via Likelihood Ratio Test after estimating variance component using ML (Maximum Likelihood). emma.MLE Estimate the maximum likelihood and its parameters in linear mixed models. emma.MLE.noX Estimate the maximum likelihood and its parameters in linear mixed models without fixed effects. emma.REMLE Estimate the restricted maximum likelihood and its parameters in linex mixed model. emma.kinship Generates a kinship matrix from a large number of SNPs