Mouse Recombinant Inbred Line AXB Genotype Data

(11th May 2005)

This page contains images of the haplotype block structure of the AXB RIL panel. All results are computed relative to Build 33 and Build 34of the mouse genome.

In each image, the SNP markers run horizontally and the RI strains vertically. The founders of the panel are at the bottom of the image. Alleles are colour-coded orange (founder A), yellow (founder B). Where the founders do not differ the colour is intermediate. Heterozygote genotypes are black, and missing genoypes white. Thus, in a given RI, haplotype blocks descended from founder A are orange rectangles and haplotype blocks descended from founder B are yellow rectangles. Black rectangles may indicate regions of the genome which have retained heterozygosity despite inbreeding, and white rectangles may represent deletions.


AXB haplotype blocks, relative to C57BL/6J and A/J/2J

(a) Build34

AXB chromosome 1

AXB chromosome 2

AXB chromosome 3

AXB chromosome 4

AXB chromosome 5

AXB chromosome 6

AXB chromosome 7

AXB chromosome 8

AXB chromosome 9

AXB chromosome 10

AXB chromosome 11

AXB chromosome 12

AXB chromosome 13

AXB chromosome 14

AXB chromosome 15

AXB chromosome 16

AXB chromosome 17

AXB chromosome 18

AXB chromosome 19

AXB chromosome X


Build33

AXB chromosome 1

AXB chromosome 2

AXB chromosome 3

AXB chromosome 4

AXB chromosome 5

AXB chromosome 6

AXB chromosome 7

AXB chromosome 8

AXB chromosome 9

AXB chromosome 10

AXB chromosome 11

AXB chromosome 12

AXB chromosome 13

AXB chromosome 14

AXB chromosome 15

AXB chromosome 16

AXB chromosome 17

AXB chromosome 18

AXB chromosome 19

AXB chromosome X


Contact Richard Mott or Jonathan Flint

 
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