Mouse Recombinant Inbred Line SWXJ Genotype Data

(11th May 2005)

This page contains images of the haplotype block structure of the SWXJ RIL panel. All results are computed relative to Build 33 and Build 34 of the mouse genome.

In each image, the SNP markers run horizontally and the RI strains vertically. The founders of the panel are at the bottom of the image. Alleles are colour-coded orange (founder A), yellow (founder B). Where the founders do not differ the colour is intermediate. Heterozygote genotypes are black, and missing genoypes white. Thus, in a given RI, haplotype blocks descended from founder A are orange rectangles and haplotype blocks descended from founder B are yellow rectangles. Black rectangles may indicate regions of the genome which have retained heterozygosity despite inbreeding, and white rectangles may represent deletions.

SWXJ haplotype blocks, relative to SWR/J and SJL/J

(a) Build 34

SWXJ chromosome 1

SWXJ chromosome 2

SWXJ chromosome 3

SWXJ chromosome 4

SWXJ chromosome 5

SWXJ chromosome 6

SWXJ chromosome 7

SWXJ chromosome 8

SWXJ chromosome 9

SWXJ chromosome 10

SWXJ chromosome 11

SWXJ chromosome 12

SWXJ chromosome 13

SWXJ chromosome 14

SWXJ chromosome 15

SWXJ chromosome 16

SWXJ chromosome 17

SWXJ chromosome 18

SWXJ chromosome 19

SWXJ chromosome X

(a) Build 34

SWXJ chromosome 1

SWXJ chromosome 2

SWXJ chromosome 3

SWXJ chromosome 4

SWXJ chromosome 5

SWXJ chromosome 6

SWXJ chromosome 7

SWXJ chromosome 8

SWXJ chromosome 9

SWXJ chromosome 10

SWXJ chromosome 11

SWXJ chromosome 12

SWXJ chromosome 13

SWXJ chromosome 14

SWXJ chromosome 15

SWXJ chromosome 16

SWXJ chromosome 17

SWXJ chromosome 18

SWXJ chromosome 19

SWXJ chromosome X

Contact Richard Mott or Jonathan Flint