MUGA /Net/mus/data/www/preCC/MUGA/GENOTYPES//chr1.muga.map 394
MEGA+MDA /Net/mus/data/www/preCC/MEGA_MUGA/Feb2014.MEGA+MDA//chr1.MEGA+MDA.map 18064
intersect 1 386 0
1 consistent 328 inconsistent 0
1 excluded 328 included 68
1 combined 18089
MUGA /Net/mus/data/www/preCC/MUGA/GENOTYPES//chr2.muga.map 406
MEGA+MDA /Net/mus/data/www/preCC/MEGA_MUGA/Feb2014.MEGA+MDA//chr2.MEGA+MDA.map 15807
intersect 2 402 0
2 consistent 339 inconsistent 0
2 excluded 339 included 69
2 combined 15860
MUGA /Net/mus/data/www/preCC/MUGA/GENOTYPES//chr3.muga.map 367
MEGA+MDA /Net/mus/data/www/preCC/MEGA_MUGA/Feb2014.MEGA+MDA//chr3.MEGA+MDA.map 13830
intersect 3 361 0
3 consistent 308 inconsistent 0
3 excluded 308 included 61
3 combined 13851
MUGA /Net/mus/data/www/preCC/MUGA/GENOTYPES//chr4.muga.map 334
MEGA+MDA /Net/mus/data/www/preCC/MEGA_MUGA/Feb2014.MEGA+MDA//chr4.MEGA+MDA.map 12901
intersect 4 329 0
4 consistent 279 inconsistent 1
4 excluded 280 included 56
4 combined 12950
MUGA /Net/mus/data/www/preCC/MUGA/GENOTYPES//chr5.muga.map 319
MEGA+MDA /Net/mus/data/www/preCC/MEGA_MUGA/Feb2014.MEGA+MDA//chr5.MEGA+MDA.map 13024
intersect 5 311 0
5 consistent 262 inconsistent 0
5 excluded 262 included 59
5 combined 13067
MUGA /Net/mus/data/www/preCC/MUGA/GENOTYPES//chr6.muga.map 341
MEGA+MDA /Net/mus/data/www/preCC/MEGA_MUGA/Feb2014.MEGA+MDA//chr6.MEGA+MDA.map 13194
intersect 6 328 0
6 consistent 277 inconsistent 0
6 excluded 277 included 66
6 combined 13248
MUGA /Net/mus/data/www/preCC/MUGA/GENOTYPES//chr7.muga.map 303
MEGA+MDA /Net/mus/data/www/preCC/MEGA_MUGA/Feb2014.MEGA+MDA//chr7.MEGA+MDA.map 12329
intersect 7 298 0
7 consistent 245 inconsistent 0
7 excluded 245 included 60
7 combined 12385
MUGA /Net/mus/data/www/preCC/MUGA/GENOTYPES//chr8.muga.map 280
MEGA+MDA /Net/mus/data/www/preCC/MEGA_MUGA/Feb2014.MEGA+MDA//chr8.MEGA+MDA.map 11704
intersect 8 274 0
8 consistent 234 inconsistent 0
8 excluded 234 included 48
8 combined 11707
MUGA /Net/mus/data/www/preCC/MUGA/GENOTYPES//chr9.muga.map 288
MEGA+MDA /Net/mus/data/www/preCC/MEGA_MUGA/Feb2014.MEGA+MDA//chr9.MEGA+MDA.map 11494
intersect 9 285 0
9 consistent 244 inconsistent 0
9 excluded 244 included 46
9 combined 11501
MUGA /Net/mus/data/www/preCC/MUGA/GENOTYPES//chr10.muga.map 327
MEGA+MDA /Net/mus/data/www/preCC/MEGA_MUGA/Feb2014.MEGA+MDA//chr10.MEGA+MDA.map 10749
intersect 10 318 0
10 consistent 282 inconsistent 0
10 excluded 282 included 46
10 combined 10771
MUGA /Net/mus/data/www/preCC/MUGA/GENOTYPES//chr11.muga.map 287
MEGA+MDA /Net/mus/data/www/preCC/MEGA_MUGA/Feb2014.MEGA+MDA//chr11.MEGA+MDA.map 11107
intersect 11 281 0
11 consistent 240 inconsistent 0
11 excluded 240 included 49
11 combined 11155
MUGA /Net/mus/data/www/preCC/MUGA/GENOTYPES//chr12.muga.map 271
MEGA+MDA /Net/mus/data/www/preCC/MEGA_MUGA/Feb2014.MEGA+MDA//chr12.MEGA+MDA.map 10986
intersect 12 267 0
12 consistent 227 inconsistent 0
12 excluded 227 included 46
12 combined 10981
MUGA /Net/mus/data/www/preCC/MUGA/GENOTYPES//chr13.muga.map 267
MEGA+MDA /Net/mus/data/www/preCC/MEGA_MUGA/Feb2014.MEGA+MDA//chr13.MEGA+MDA.map 10841
intersect 13 261 0
13 consistent 218 inconsistent 0
13 excluded 218 included 50
13 combined 10878
MUGA /Net/mus/data/www/preCC/MUGA/GENOTYPES//chr14.muga.map 277
MEGA+MDA /Net/mus/data/www/preCC/MEGA_MUGA/Feb2014.MEGA+MDA//chr14.MEGA+MDA.map 9808
intersect 14 270 0
14 consistent 225 inconsistent 0
14 excluded 225 included 54
14 combined 9861
MUGA /Net/mus/data/www/preCC/MUGA/GENOTYPES//chr15.muga.map 223
MEGA+MDA /Net/mus/data/www/preCC/MEGA_MUGA/Feb2014.MEGA+MDA//chr15.MEGA+MDA.map 9350
intersect 15 221 0
15 consistent 193 inconsistent 0
15 excluded 193 included 32
15 combined 9341
MUGA /Net/mus/data/www/preCC/MUGA/GENOTYPES//chr16.muga.map 220
MEGA+MDA /Net/mus/data/www/preCC/MEGA_MUGA/Feb2014.MEGA+MDA//chr16.MEGA+MDA.map 8493
intersect 16 212 0
16 consistent 187 inconsistent 0
16 excluded 187 included 35
16 combined 8514
MUGA /Net/mus/data/www/preCC/MUGA/GENOTYPES//chr17.muga.map 195
MEGA+MDA /Net/mus/data/www/preCC/MEGA_MUGA/Feb2014.MEGA+MDA//chr17.MEGA+MDA.map 9034
intersect 17 188 0
17 consistent 155 inconsistent 1
17 excluded 156 included 41
17 combined 9073
MUGA /Net/mus/data/www/preCC/MUGA/GENOTYPES//chr18.muga.map 185
MEGA+MDA /Net/mus/data/www/preCC/MEGA_MUGA/Feb2014.MEGA+MDA//chr18.MEGA+MDA.map 8636
intersect 18 182 0
18 consistent 151 inconsistent 0
18 excluded 151 included 36
18 combined 8667
MUGA /Net/mus/data/www/preCC/MUGA/GENOTYPES//chr19.muga.map 129
MEGA+MDA /Net/mus/data/www/preCC/MEGA_MUGA/Feb2014.MEGA+MDA//chr19.MEGA+MDA.map 6135
intersect 19 127 0
19 consistent 108 inconsistent 0
19 excluded 108 included 23
19 combined 6157
MUGA /Net/mus/data/www/preCC/MUGA/GENOTYPES//chrX.muga.map 331
MEGA+MDA /Net/mus/data/www/preCC/MEGA_MUGA/Feb2014.MEGA+MDA//chrX.MEGA+MDA.map 8883
intersect X 324 0
X consistent 266 inconsistent 0
X excluded 266 included 67
X combined 8916