Linear mixed-effects models using S4 classes

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Documentation for package ‘lme4’ version 0.999999-0

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anova-method Mixed Model Representations and *mer Methods
as.data.frame-method Mixed-model Markov chain Monte Carlo results
as.matrix-method Mixed-model Markov chain Monte Carlo results
cake Breakage angle of chocolate cakes
cbpp Contagious bovine pleuropneumonia
cbpp_PB Stored parametric bootstrap samples for 'cbpp' data
coef-method Class "lmList"
coef-method Mixed Model Representations and *mer Methods
coerce-method Mixed Model Representations and *mer Methods
coerce-method Mixed-model Markov chain Monte Carlo results
confint-method Class "lmList"
densityplot-method Mixed-model Markov chain Monte Carlo results
deviance-method Mixed Model Representations and *mer Methods
Dyestuff Yield of dyestuff by batch
Dyestuff2 Yield of dyestuff by batch
expand-method Mixed Model Representations and *mer Methods
fitted-method Mixed Model Representations and *mer Methods
fixed.effects Extract the fixed-effects estimates
fixef Extract the fixed-effects estimates
fixef-method Extract the fixed-effects estimates
formula-method Class "lmList"
formula-method Mixed Model Representations and *mer Methods
getME Extract or Get Generalize Components from a Fitted Mixed Effects Model
glmer Fit Mixed-Effects Models
HPDinterval Highest Posterior Density intervals
HPDinterval-method Highest Posterior Density intervals
isGLMM Extract or Get Generalize Components from a Fitted Mixed Effects Model
isLMM Extract or Get Generalize Components from a Fitted Mixed Effects Model
isNLMM Extract or Get Generalize Components from a Fitted Mixed Effects Model
isREML Extract or Get Generalize Components from a Fitted Mixed Effects Model
lmer Fit Mixed-Effects Models
lmer2 Fit Mixed-Effects Models
lmList List of lm Objects with a Common Model
lmList-class Class "lmList"
lmList-method List of lm Objects with a Common Model
logLik-method Mixed Model Representations and *mer Methods
mcmcsamp Generate an MCMC sample
mcmcsamp-method Generate an MCMC sample
mer-class Mixed Model Representations and *mer Methods
merMCMC-class Mixed-model Markov chain Monte Carlo results
model.frame-method Mixed Model Representations and *mer Methods
model.matrix-method Mixed Model Representations and *mer Methods
nlmer Fit Mixed-Effects Models
Pastes Paste strength by batch and cask
Penicillin Variation in penicillin testing
plot-method Class "lmList"
print-method Mixed Model Representations and *mer Methods
qqmath-method Mixed-model Markov chain Monte Carlo results
ranef Extract the modes of the random effects
ranef-method Extract the modes of the random effects
ranef-methods Extract the modes of the random effects
refit Re-fit a model to a new response vector
refit-method Re-fit a model to a new response vector
refit-method Simulate based on mer fits
resid-method Mixed Model Representations and *mer Methods
residuals-method Mixed Model Representations and *mer Methods
show-method Class "VarCorr"
show-method Class "lmList"
show-method Mixed Model Representations and *mer Methods
sigma Extract residual standard error
sigma-method Extract residual standard error
simulate-mer Simulate based on mer fits
simulate-method Simulate based on mer fits
sleepstudy Reaction times in a sleep deprivation study
sleepstudy_PB Stored parametric bootstrap samples for the 'sleepstudy' data
summary-method Mixed Model Representations and *mer Methods
summary.mer-class Mixed Model Representations and *mer Methods
terms-method Mixed Model Representations and *mer Methods
update-method Class "lmList"
update-method Mixed Model Representations and *mer Methods
VarCorr Extract variance and correlation components
VarCorr-class Class "VarCorr"
VarCorr-method Extract variance and correlation components
vcov-method Mixed Model Representations and *mer Methods
VerbAgg Verbal Aggression item responses
with-method Mixed Model Representations and *mer Methods
xyplot-method Mixed-model Markov chain Monte Carlo results