Papers & publications
Click on the links below to see abstracts.
- Shobhit Gupta, John A. Stamatoyannopoulos, Timothy L. Bailey and William Stafford Noble. "Quantifying similarity between motifs" Genome Biology 8:R24, 2007.
- Grundy, William Noble. A Bayesian Approach to Motif-based Protein Modeling. Ph.D. dissertation. University of California, San Diego. June, 1998.
- Grundy, William N., Timothy L. Bailey, Charles P. Elkan and Michael E. Baker. "Meta-MEME: Motif-based Hidden Markov Models of Biological Sequences". Computer Applications in the Biosciences, 13(4):397-406, 1997.
- Grundy, William N., Timothy L. Bailey, Charles P. Elkan and Michael E. Baker. "Hidden Markov Model Analysis of Motifs in Steroid Dehydrogenases and their Homologs." Biochemical and Biophysical Research Communications, 231(3):760-766, 1997.
- Grundy, William N. and Charles P. Elkan. "Motif-based Hidden Markov Models for Multiple Sequence Alignment" (poster). Fifth International Conference on Intelligent Systems for Molecular Biology (ISMB-97). Halkidiki, Greece. June 21-25, 1997.
- Bailey, Timothy L., Michael E. Baker, Charles P. Elkan and William N. Grundy. "MEME, MAST, and Meta-MEME: New Tools for Motif Discovery in Protein Sequences" in Pattern Discovery in Molecular Biology. J. Wang, B. Shapiro and D. Shasha, editors. Oxford UP, 1998. In press.
- Grundy, William N., Timothy L. Bailey and Charles P. Elkan. "ParaMEME: A Parallel Implementation and a Web Interface for a DNA and Protein Motif Discovery Tool" (with corrections). Computer Applications in the Biosciences 12(4):303-310, 1996.
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